BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN124667.1|CN124667 RHOH1_6_E05.b1_A002 Acid- and alkali... 904 0.0
gb|CL175876.1|CL175876 104_381_10892754_148_31764_354 Sorgh... 856 0.0
gb|BG048182.1|BG048182 OV1_28_F10.g1_A002 Ovary 1 (OV1) Sor... 852 0.0
gb|CF071090.1|CF071090 FE1_15_F06.b1_A002 Iron-deficient se... 827 0.0
gb|BG948189.1|BG948189 IP1_10_D12.g1_A002 Immature pannicle... 811 0.0
gb|BG101880.1|BG101880 RHIZ2_23_E10.g1_A003 Rhizome2 (RHIZ2... 785 0.0
gb|BF481319.1|BF481319 FM1_18_E02.g1_A003 Floral-Induced Me... 781 0.0
gb|AW745132.1|AW745132 LG1_386_A11.g1_A002 Light Grown 1 (L... 779 0.0
gb|BG947358.1|BG947358 IP1_4_E06.g1_A002 Immature pannicle ... 696 0.0
gb|BG241569.1|BG241569 RHIZ2_17_B11.g1_A003 Rhizome2 (RHIZ2... 694 0.0
gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stres... 686 0.0
gb|AW922521.1|AW922521 DG1_20_G09.g1_A002 Dark Grown 1 (DG1... 682 0.0
gb|BI139719.1|BI139719 IP1_48_C06.g1_A002 Immature pannicle... 666 0.0
gb|AW746346.1|AW746346 WS1_40_A04.g1_A002 Water-stressed 1 ... 664 0.0
gb|BI098162.1|BI098162 IP1_32_H05.g1_A002 Immature pannicle... 656 0.0
gb|BF587892.1|BF587892 FM1_34_B12.g1_A003 Floral-Induced Me... 648 0.0
gb|BG048495.1|BG048495 OV1_14_C05.g2_A002 Ovary 1 (OV1) Sor... 644 0.0
gb|CL175875.1|CL175875 104_381_10892754_116_31765_354 Sorgh... 632 e-179
gb|AW746192.1|AW746192 WS1_40_A04.b1_A002 Water-stressed 1 ... 567 e-160
gb|BI075695.1|BI075695 IP1_24_A08.g1_A002 Immature pannicle... 533 e-150
gb|BI099533.1|BI099533 IP1_43_D11.g1_A002 Immature pannicle... 533 e-150
gb|BG054019.1|BG054019 OV2_1_C08.g1_A002 Ovary 2 (OV2) Sorg... 517 e-145
gb|BG054010.1|BG054010 OV2_1_B06.g1_A002 Ovary 2 (OV2) Sorg... 502 e-140
gb|CF072581.1|CF072581 FE1_3_H04.g1_A002 Iron-deficient see... 474 e-132
gb|CN134402.1|CN134402 OX1_26_D08.b1_A002 Oxidatively-stres... 468 e-130
gb|BE918655.1|BE918655 FM1_2_H09.g1_A003 Floral-Induced Mer... 458 e-127
gb|BF481348.1|BF481348 FM1_18_H06.g1_A003 Floral-Induced Me... 438 e-121
gb|CX613230.1|CX613230 GABR1_7_B06.b1_A002 GA- or brassinol... 424 e-117
gb|DR831463.2|DR831463 MM79 Sorghum bicolor greenbug-respon... 420 e-116
gb|CX621252.1|CX621252 GABR1_57_B05.b1_A002 GA- or brassino... 406 e-111
gb|BG739401.1|BG739401 EM1_82_E02.g1_A002 Embryo 1 (EM1) So... 389 e-106
gb|AW284400.1|AW284400 LG1_289_B06.g1_A002 Light Grown 1 (L... 345 4e-093
gb|BF481389.1|BF481389 FM1_18_E02.b1_A003 Floral-Induced Me... 260 2e-067
gb|BF421490.1|BF421490 FM1_8_D07.g1_A003 Floral-Induced Mer... 119 4e-025
gb|CW159691.1|CW159691 104_566_11149490_148_36423_015 Sorgh... 62 9e-008
gb|CW163891.1|CW163891 104_571_11151698_116_36456_003 Sorgh... 62 9e-008
gb|CW212992.1|CW212992 104_644_11191313_116_37026_073 Sorgh... 62 9e-008
gb|CW407797.1|CW407797 fsbb001f101g18f0 Sorghum methylation... 62 9e-008
gb|CW407798.1|CW407798 fsbb001f101g18k0 Sorghum methylation... 62 9e-008
gb|CL177806.1|CL177806 104_385_10894093_116_31914_157 Sorgh... 44 0.021
gb|CW216644.1|CW216644 104_649_11195227_116_37125_072 Sorgh... 44 0.021
gb|CW269890.1|CW269890 104_741_11402081_116_35322_075 Sorgh... 44 0.021
gb|CW336799.1|CW336799 104_836_11483793_148_36108_043 Sorgh... 44 0.021
gb|CW451021.1|CW451021 fsbb001f189o18k0 Sorghum methylation... 44 0.021
gb|BE597670.1|BE597670 PI1_72_F08.b1_A002 Pathogen induced ... 44 0.021
gb|BE599927.1|BE599927 PI1_77_A04.b1_A002 Pathogen induced ... 44 0.021
gb|CW032228.1|CW032228 104_261_10501259_114_30363 Sorghum m... 42 0.082
gb|CW196051.1|CW196051 104_619_11180963_148_36803_034 Sorgh... 42 0.082
gb|CW227802.1|CW227802 104_667_11206011_116_37243_010 Sorgh... 42 0.082
gb|CW268075.1|CW268075 104_738_11401085_116_35303_021 Sorgh... 42 0.082
gb|BE361198.1|BE361198 DG1_70_A01.g1_A002 Dark Grown 1 (DG1... 42 0.082
gb|CW238583.1|CW238583 104_695_11216809_148_37525_007 Sorgh... 40 0.32
gb|CW390482.1|CW390482 fsbb001f076c13k0 Sorghum methylation... 40 0.32
gb|CD223569.1|CD223569 CCC1_28_E11.g1_A007 Callus culture/c... 40 0.32
>gb|CN124667.1|CN124667 RHOH1_6_E05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_E05_A002 3', mRNA sequence
Length = 826
Score = 904 bits (456), Expect = 0.0
Identities = 661/724 (91%), Gaps = 12/724 (1%)
Strand = Plus / Minus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 730 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 671
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-a 144
||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 670 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacaccccca 612
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 611 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 553
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 552 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 493
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 492 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 434
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 433 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 380
Query: 385 gcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccga 444
| || ||||| || ||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 379 gtgggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccga 320
Query: 445 accgtccggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccg 504
||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 319 accgtccagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgctg 260
Query: 505 caagggtaggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgt 564
|||| |||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 259 caagagtaggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctgt 200
Query: 565 cagggccagccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctcc 624
||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||
Sbjct: 199 cagggccagccaccattgctccaacaaggatattagggtttgccttttttgtatccctcc 140
Query: 625 atttgtaacctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctctgt 684
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 139 atttgtaacctcctttgcatccatacttgacgccattatgaggtattgatgcacctctgt 80
Query: 685 ggtgagggcgcttcgggtacttgtttncgaaacccacancgtagctcatcttcaatgggt 744
| |||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||
Sbjct: 79 gatgagggcgcttcgggtacttgtttccaaaacccacaacgtagctcatctttaatgggt 20
Query: 745 tctt 748
||||
Sbjct: 19 tctt 16
>gb|CL175876.1|CL175876 104_381_10892754_148_31764_354 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892754, DNA
sequence
Length = 732
Score = 856 bits (432), Expect = 0.0
Identities = 627/686 (91%), Gaps = 12/686 (1%)
Strand = Plus / Plus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 55 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 114
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-a 144
||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 115 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacaccccca 173
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 174 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 232
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 233 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 292
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 293 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 351
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 352 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 405
Query: 385 gcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccga 444
| || ||||| || ||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 406 gtgggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccga 465
Query: 445 accgtccggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccg 504
||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 466 accgtccagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgctg 525
Query: 505 caagggtaggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgt 564
|||| |||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 526 caagagtaggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctgt 585
Query: 565 cagggccagccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctcc 624
||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||
Sbjct: 586 cagggccagccaccattgctccaacaaggatattagggtttgccttttttgtatccctcc 645
Query: 625 atttgtaacctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctctgt 684
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 646 atttgtaacctcctttgcatccatacttgacgccattatgaggtattgatgcacctctgt 705
Query: 685 ggtgagggcgcttcgggtacttgttt 710
| ||||||||||||||||||||||||
Sbjct: 706 gatgagggcgcttcgggtacttgttt 731
>gb|BG048182.1|BG048182 OV1_28_F10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 683
Score = 852 bits (430), Expect = 0.0
Identities = 621/679 (91%), Gaps = 11/679 (1%)
Strand = Plus / Minus
Query: 71 aatttgtaaaggtacaatttctacaaaaaataacttcacacatgagcaggaatgccaaca 130
||||||||||||| | ||||||||||||| ||||| |||||||||| |||||||||| |
Sbjct: 680 aatttgtaaaggtgccatttctacaaaaag-aactt-acacatgagctggaatgccaata 623
Query: 131 gcaacaagacccc-aaaaattagctttcacgcgatgcacacaacttctggtctatgtatg 189
||||||| ||||| |||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct: 622 gcaacaacacccccaaaaattagctt-cacgcgatgcacacaacttccgatctatgtttg 564
Query: 190 acagaggattttatactgatctgtcataatggtacagaaatagaagctctataagcttat 249
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 563 acagaggattttatactgatctgtcatacgggtacagaaatacaagctctataagcttat 504
Query: 250 gctgtccgctttcctgttcctggcctttgctgtaccaactgatcatatgtttgctccact 309
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 gctgtccgctttcctgttcctggcctttgctgtaccaaatgatcatatgtttgctccact 444
Query: 310 tccctgtgttgatgctttgggggaaaaatatattcagaggtctgtctctctatggtttcc 369
||||| | |||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 443 tccctat-ttgatgctttgg------aaaatattcagaggtctgtctctttatggtttcc 391
Query: 370 atgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaagatggtgt 429
||||||||||||| || || ||||| || ||||||||||| || ||||||||||||||||
Sbjct: 390 atgctgatggcggtggtgggggtgttgggaacattggaggaattgcagagaagatggtgt 331
Query: 430 tcttgtcgatgccgaaccgtccggttttgatatcagatatagaaatcagtgctgcaacca 489
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcttatcaatgccgaaccgtccagttttgatatcagatatagaaatcagtgctgcaacca 271
Query: 490 gaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtgcggacatctttgt 549
|||||| ||||| ||||| |||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 270 aaccagcatttgctgcaagagtaggctctgagtaattgtagtttgtgcggacatctttgt 211
Query: 550 agccgtcacgcctgtcagggccagccaccattgctccaacaaggatgttagggtttgcct 609
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 210 agccatcatgcctgtcagggccagccaccattgctccaacaaggatattagggtttgcct 151
Query: 610 tcttcgtgtccctccatttgtaacctcctttgcatccatacttgacgccgttatgaggta 669
| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 150 tttttgtatccctccatttgtaacctcctttgcatccatacttgacgccattatgaggta 91
Query: 670 tcgaggcacctctgtggtgagggcgcttcgggtacttgtttncgaaacccacancgtagc 729
| || ||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 90 ttgatgcacctctgtgatgagggcgcttcgggtacttgtttccaaaacccacaacgtagc 31
Query: 730 tcatcttcaatgggttctt 748
||||||| |||||||||||
Sbjct: 30 tcatctttaatgggttctt 12
>gb|CF071090.1|CF071090 FE1_15_F06.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_F06_A002 3', mRNA sequence
Length = 674
Score = 827 bits (417), Expect = 0.0
Identities = 616/675 (91%), Gaps = 13/675 (1%)
Strand = Plus / Minus
Query: 40 ctttactactatgaaaagtcactcctataaca--atttgtaaaggtacaatttctacaaa 97
|||||||| |||||||||||||||||||| | |||||||||||| | |||||||||||
Sbjct: 671 ctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgccatttctacaaa 612
Query: 98 aaataacttcacacatgagcaggaatgccaacagcaacaagacccc-aaaaattagcttt 156
|| |||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||
Sbjct: 611 aag-aacttcacacatgagctggaatgccaatagcaacaacacccccaaaaattagctt- 554
Query: 157 cacgcgatgcacacaacttctggtctatgtatgacagaggattttatactgatctgtcat 216
|||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct: 553 cacgcgatgcacacaacttccgatctatgtttgacagaggattttatactgatctgtcat 494
Query: 217 aatggtacagaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctt 276
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acgggtacagaaatacaagctctataagcttatgctgtccgctttcctgttcctggcctt 434
Query: 277 tgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaa 336
||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 433 tgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgctttgg------a 381
Query: 337 atatattcagaggtctgtctctctatggtttccatgctg-atggcggcggcggcggtgtc 395
| |||||||||||||||||||| |||||||||||||||| ||||||| || || |||||
Sbjct: 380 aaatattcagaggtctgtctctttatggtttccatgctgnatggcggtggtgggggtgtt 321
Query: 396 ggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggtt 455
|| ||||||||||| || |||||||||||||||||||| || |||||||||||||| |||
Sbjct: 320 gggaacattggaggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagtt 261
Query: 456 ttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggc 515
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||
Sbjct: 260 ttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggc 201
Query: 516 tctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagcc 575
|||| ||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 200 tctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctgtcagggccagcc 141
Query: 576 accattgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacct 635
|||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 140 accattgctccaacaaggatattagggtttgccttttttgtatccctccatttgtaacct 81
Query: 636 cctttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgc 695
||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 80 cctttgcatccatacttgacgccattatgaggtattgaagcacctctgtgatgagggcgc 21
Query: 696 ttcgggtacttgttt 710
|||||||||||||||
Sbjct: 20 ttcgggtacttgttt 6
>gb|BG948189.1|BG948189 IP1_10_D12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 654
Score = 811 bits (409), Expect = 0.0
Identities = 601/659 (91%), Gaps = 12/659 (1%)
Strand = Plus / Minus
Query: 30 cacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtacaa 87
||||||||| |||||||| |||||||||||||||||||| | |||||||||||| | |
Sbjct: 654 cacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgcca 595
Query: 88 tttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-aaa 146
|||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |||
Sbjct: 594 tttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacacccccaaa 536
Query: 147 aattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttatact 206
||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 535 aattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttatact 477
Query: 207 gatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcctgt 266
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 476 gatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcctgt 417
Query: 267 tcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgctt 326
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct: 416 tcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgctt 358
Query: 327 tgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcggc 386
||| || |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 357 tgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtggt 304
Query: 387 ggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccgaac 446
|| ||||| || ||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 303 gggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccgaac 244
Query: 447 cgtccggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgca 506
||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 243 cgtccagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgctgca 184
Query: 507 agggtaggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtca 566
|| |||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 183 agagtaggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctgtca 124
Query: 567 gggccagccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccat 626
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 123 gggccagccaccattgctccaacaaggatattagggtttgccttttttgtatccctccat 64
Query: 627 ttgtaacctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtg 685
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 63 ttgtaacctcctttgcatccatacttgacgccattatgaggtattgatgcacctctgtg 5
>gb|BG101880.1|BG101880 RHIZ2_23_E10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 637
Score = 785 bits (396), Expect = 0.0
Identities = 583/639 (91%), Gaps = 11/639 (1%)
Strand = Plus / Minus
Query: 71 aatttgtaaaggtacaatttctacaaaaaataacttcacacatgagcaggaatgccaaca 130
||||||||||||| | ||||||||||||| ||||| |||||||||| |||||||||| |
Sbjct: 629 aatttgtaaaggtgccatttctacaaaaag-aactt-acacatgagctggaatgccaata 572
Query: 131 gcaacaagacccca-aaaattagctttcacgcgatgcacacaacttctggtctatgtatg 189
||| ||| ||||| ||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct: 571 gcagcaacaccccccaaaattagctt-cacgcgatgcacacaacttccgatctatgtttg 513
Query: 190 acagaggattttatactgatctgtcataatggtacagaaatagaagctctataagcttat 249
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 512 acagaggattttatactgatctgtcatacgggtacagaaatacaagctctataagcttat 453
Query: 250 gctgtccgctttcctgttcctggcctttgctgtaccaactgatcatatgtttgctccact 309
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 452 gctgtccgctttcctgttcctggcctttgctgtaccaaatgatcatatgtttgctccact 393
Query: 310 tccctgtgttgatgctttgggggaaaaatatattcagaggtctgtctctctatggtttcc 369
||||| | |||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 392 tccctat-ttgatgctttgg------aaaatattcagaggtctgtctctttatggtttcc 340
Query: 370 atgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaagatggtgt 429
||||||||||||| || || ||||| || ||||||||||| || ||||||||||||||||
Sbjct: 339 atgctgatggcggtggtgggggtgttgggaacattggaggaattgcagagaagatggtgt 280
Query: 430 tcttgtcgatgccgaaccgtccggttttgatatcagatatagaaatcagtgctgcaacca 489
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcttatcaatgccgaaccgtccagttttgatatcagatatagaaatcagtgctgcaacca 220
Query: 490 gaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtgcggacatctttgt 549
|||||| ||||| ||||| |||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 219 aaccagcatttgctgcaagagtaggctctgagtaattgtagtttgtgcggacatctttgt 160
Query: 550 agccgtcacgcctgtcagggccagccaccattgctccaacaaggatgttagggtttgcct 609
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 159 agccatcatgcctgtcagggccagccaccattgctccaacaaggatattagggtttgcct 100
Query: 610 tcttcgtgtccctccatttgtaacctcctttgcatccatacttgacgccgttatgaggta 669
| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 99 tttttgtatccctccatttgtaacctcctttgcatccatacttgacgccattatgaggta 40
Query: 670 tcgaggcacctctgtggtgagggcgcttcgggtacttgt 708
| || ||||||||||| ||||||||||||||||||||||
Sbjct: 39 ttgatgcacctctgtgatgagggcgcttcgggtacttgt 1
>gb|BF481319.1|BF481319 FM1_18_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 636
Score = 781 bits (394), Expect = 0.0
Identities = 581/637 (91%), Gaps = 11/637 (1%)
Strand = Plus / Minus
Query: 71 aatttgtaaaggtacaatttctacaaaaaataacttcacacatgagcaggaatgccaaca 130
||||||||||||| | ||||||||||||| ||||| |||||||||| |||||||||| |
Sbjct: 627 aatttgtaaaggtgccatttctacaaaaag-aactt-acacatgagctggaatgccaata 570
Query: 131 gcaacaagacccca-aaaattagctttcacgcgatgcacacaacttctggtctatgtatg 189
||| ||| ||||| ||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct: 569 gcagcaacaccccccaaaattagctt-cacgcgatgcacacaacttccgatctatgtttg 511
Query: 190 acagaggattttatactgatctgtcataatggtacagaaatagaagctctataagcttat 249
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 510 acagaggattttatactgatctgtcatacgggtacagaaatacaagctctataagcttat 451
Query: 250 gctgtccgctttcctgttcctggcctttgctgtaccaactgatcatatgtttgctccact 309
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 450 gctgtccgctttcctgttcctggcctttgctgtaccaaatgatcatatgtttgctccact 391
Query: 310 tccctgtgttgatgctttgggggaaaaatatattcagaggtctgtctctctatggtttcc 369
||||| | |||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 390 tccctat-ttgatgctttgg------aaaatattcagaggtctgtctctttatggtttcc 338
Query: 370 atgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaagatggtgt 429
||||||||||||| || || ||||| || ||||||||||| || ||||||||||||||||
Sbjct: 337 atgctgatggcggtggtgggggtgttgggaacattggaggaattgcagagaagatggtgt 278
Query: 430 tcttgtcgatgccgaaccgtccggttttgatatcagatatagaaatcagtgctgcaacca 489
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcttatcaatgccgaaccgtccagttttgatatcagatatagaaatcagtgctgcaacca 218
Query: 490 gaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtgcggacatctttgt 549
|||||| ||||| ||||| |||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 217 aaccagcatttgctgcaagagtaggctctgagtaattgtagtttgtgcggacatctttgt 158
Query: 550 agccgtcacgcctgtcagggccagccaccattgctccaacaaggatgttagggtttgcct 609
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 157 agccatcatgcctgtcagggccagccaccattgctccaacaaggatattagggtttgcct 98
Query: 610 tcttcgtgtccctccatttgtaacctcctttgcatccatacttgacgccgttatgaggta 669
| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 97 tttttgtatccctccatttgtaacctcctttgcatccatacttgacgccattatgaggta 38
Query: 670 tcgaggcacctctgtggtgagggcgcttcgggtactt 706
| || ||||||||||| ||||||||||||||||||||
Sbjct: 37 ttgatgcacctctgtgatgagggcgcttcgggtactt 1
>gb|AW745132.1|AW745132 LG1_386_A11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 617
Score = 779 bits (393), Expect = 0.0
Identities = 551/605 (91%), Gaps = 7/605 (1%)
Strand = Plus / Minus
Query: 165 gcacacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtac 224
|||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 617 gcacacaacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtac 558
Query: 225 agaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtac 284
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaaatacaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtac 498
Query: 285 caactgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattc 344
||| |||||||||||||||||||||||||| | |||||||||||| || ||||||
Sbjct: 497 caaatgatcatatgtttgctccacttccctat-ttgatgctttgg------aaaatattc 445
Query: 345 agaggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacatt 404
|||||||||||||| ||||||||||||||||||||||| || || ||||| || ||||||
Sbjct: 444 agaggtctgtctctttatggtttccatgctgatggcggtggtgggggtgttgggaacatt 385
Query: 405 ggagggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatca 464
||||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 384 ggaggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatca 325
Query: 465 gatatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtag 524
||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| |||
Sbjct: 324 gatatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggctctgagtaa 265
Query: 525 ttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgct 584
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 264 ttgtagtttgtgcggacatctttgtagccatcatgcctgtcagggccagccaccattgct 205
Query: 585 ccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcat 644
||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 204 ccaacaaggatattagggtttgccttttttgtatccctccatttgtaacctcctttgcat 145
Query: 645 ccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtac 704
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 144 ccatacttgacgccattatgaggtattgatgcacctctgtgatgagggcgcttcgggtac 85
Query: 705 ttgtttncgaaacccacancgtagctcatcttcaatgggttcttnnnnnggatgtagtca 764
|||||| | ||||||||| ||||||||||||| ||||||||||| ||||||| |||
Sbjct: 84 ttgtttccaaaacccacaacgtagctcatctttaatgggttctttccaaggatgtaatca 25
Query: 765 agctg 769
|||||
Sbjct: 24 agctg 20
>gb|BG947358.1|BG947358 IP1_4_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 583
Score = 696 bits (351), Expect = 0.0
Identities = 527/580 (90%), Gaps = 12/580 (2%)
Strand = Plus / Minus
Query: 34 caaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtacaatttc 91
||||| |||||||| |||||||||||||||||||| | |||||||||||| | |||||
Sbjct: 580 caaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgccatttc 521
Query: 92 tacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-aaaaatt 150
|||||||| |||||||||||||||| |||||||||| |||||||| ||||| |||||||
Sbjct: 520 tacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacacccccaaaaatt 462
Query: 151 agctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttatactgatc 210
||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 461 agctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttatactgatc 403
Query: 211 tgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcctgttcct 270
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcctgttcct 343
Query: 271 ggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgctttggg 330
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct: 342 ggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgctttgg- 285
Query: 331 ggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcggcggcg 390
|| |||||||||||||||||||| ||||||||||||||||||||||| || || |
Sbjct: 284 -----aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtggtgggg 230
Query: 391 gtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccgaaccgtc 450
|||| || ||||||||||| || |||||||||||||||||||| || |||||||||||||
Sbjct: 229 gtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccgaaccgtc 170
Query: 451 cggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgcaaggg 510
| ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
Sbjct: 169 cagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgctgcaagag 110
Query: 511 taggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggc 570
||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct: 109 taggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctgtcagggc 50
Query: 571 cagccaccattgctccaacaaggatgttagggtttgcctt 610
||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 49 cagccaccattgctccaacaaggatattanggtttgcctt 10
>gb|BG241569.1|BG241569 RHIZ2_17_B11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 568
Score = 694 bits (350), Expect = 0.0
Identities = 504/552 (91%), Gaps = 9/552 (1%)
Strand = Plus / Minus
Query: 108 acacatgagcaggaatgccaacagcaacaagacccca-aaaattagctttcacgcgatgc 166
|||||||||| |||||||||| |||| ||| ||||| ||||||||||| ||||||||||
Sbjct: 544 acacatgagctggaatgccaatagcagcaacaccccccaaaattagctt-cacgcgatgc 486
Query: 167 acacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtacag 226
|||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 485 acacaacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacag 426
Query: 227 aaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 286
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaatacaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 366
Query: 287 actgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcag 346
| |||||||||||||||||||||||||| | |||||||||||| || ||||||||
Sbjct: 365 aatgatcatatgtttgctccacttccctat-ttgatgctttgg------aaaatattcag 313
Query: 347 aggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattgg 406
|||||||||||| ||||||||||||||||||||||| || || ||||| || ||||||||
Sbjct: 312 aggtctgtctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattgg 253
Query: 407 agggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatcaga 466
||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 252 aggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatcaga 193
Query: 467 tatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagtt 526
||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| ||| ||
Sbjct: 192 tatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggctctgagtaatt 133
Query: 527 gtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctcc 586
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 132 gtagtttgtgcggacatctttgtagccatcatgcctgtcagggccagccaccattgctcc 73
Query: 587 aacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatcc 646
||||||||| ||| |||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 72 aacaaggatattanggtttgccttttttgtatccctccatttgtaacctcctttgcatcc 13
Query: 647 atacttgacgcc 658
||||||||||||
Sbjct: 12 atacttgacgcc 1
>gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_D08_A002 5', mRNA sequence
Length = 814
Score = 686 bits (346), Expect = 0.0
Identities = 498/550 (90%), Gaps = 7/550 (1%)
Strand = Plus / Minus
Query: 220 ggtacagaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgc 279
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 806 ggtacagaaatacaagctctataagcttatgctgtccgctttcctgttcctggcctctgc 747
Query: 280 tgtaccaactgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaaata 339
|||||||| |||||||||||||||||||||||||| | |||||||||||| || |
Sbjct: 746 tgtaccaaatgatcatatgtttgctccacttccctat-ttgatgctttgg------aaaa 694
Query: 340 tattcagaggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaa 399
||||||||||||||||||| ||||||||||||||||| ||||| || || ||||| || |
Sbjct: 693 tattcagaggtctgtctctttatggtttccatgctgaaggcggtggtgggggtgttggga 634
Query: 400 acattggagggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttga 459
|||||||||| || |||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 633 acattggaggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttga 574
Query: 460 tatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctg 519
|||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||
Sbjct: 573 tatcagatatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggctctg 514
Query: 520 tgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacca 579
||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 513 agtaattgtagtttgtgcggacatctttgtagccatcatgcctgtcagggccagccacca 454
Query: 580 ttgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctt 639
|||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 453 ttgctccaacaaggatattagggtttgccttttttgtatccctccatttataacctcctt 394
Query: 640 tgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcg 699
||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 393 tgcatccatacttgacgccattatgaggtattgatgcacctctgtgatgagggcgcttcg 334
Query: 700 ggtacttgtttncgaaacccacancgtagctcatcttcaatgggttcttnnnnnggatgt 759
||||||||||| | ||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 333 ggtacttgtttccaaaacccacaacgtagctcatctttaatgggttctttccaaggatgt 274
Query: 760 agtcaagctg 769
| ||||||||
Sbjct: 273 aatcaagctg 264
>gb|AW922521.1|AW922521 DG1_20_G09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 679
Score = 682 bits (344), Expect = 0.0
Identities = 515/566 (90%), Gaps = 12/566 (2%)
Strand = Plus / Minus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 557 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 498
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-a 144
||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 497 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacaccccca 439
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 438 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 380
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 320
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 319 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 261
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 260 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 207
Query: 385 gcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccga 444
| || ||||| || ||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 206 gtgggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccga 147
Query: 445 accgtccggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccg 504
||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 146 accgtccagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgctg 87
Query: 505 caagggtaggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgt 564
|||| |||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 86 caagagtaggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctgt 27
Query: 565 cagggccagccaccattgctccaaca 590
||||||||||||||||||||||||||
Sbjct: 26 cagggccagccaccattgctccaaca 1
>gb|BI139719.1|BI139719 IP1_48_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 666 bits (336), Expect = 0.0
Identities = 507/558 (90%), Gaps = 12/558 (2%)
Strand = Plus / Minus
Query: 30 cacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtacaa 87
||||||||| |||||||| |||||||||||||||||||| | |||||||||||| | |
Sbjct: 549 cacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgcca 490
Query: 88 tttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-aaa 146
|||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |||
Sbjct: 489 tttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacacccccaaa 431
Query: 147 aattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttatact 206
||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 430 aattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttatact 372
Query: 207 gatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcctgt 266
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 371 gatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcctgt 312
Query: 267 tcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgctt 326
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct: 311 tcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgctt 253
Query: 327 tgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcggc 386
||| || |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 252 tgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtggt 199
Query: 387 ggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccgaac 446
|| ||||| || ||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 198 gggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccgaac 139
Query: 447 cgtccggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgca 506
||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 138 cgtccagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgctgca 79
Query: 507 agggtaggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtca 566
|| |||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 78 agagtaggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctgtca 19
Query: 567 gggccagccaccattgct 584
||||||||||||||||||
Sbjct: 18 gggccagccaccattgct 1
>gb|AW746346.1|AW746346 WS1_40_A04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 537
Score = 664 bits (335), Expect = 0.0
Identities = 497/545 (91%), Gaps = 12/545 (2%)
Strand = Plus / Minus
Query: 54 aaagtcactcctataaca--atttgtaaaggtacaatttctacaaaaaataacttcacac 111
|||||||||||||||| | |||||||||||| | ||||||||||||| ||||||||||
Sbjct: 536 aaagtcactcctataaaataatttgtaaaggtgccatttctacaaaaag-aacttcacac 478
Query: 112 atgagcaggaatgccaacagcaacaagacccc-aaaaattagctttcacgcgatgcacac 170
|||||| |||||||||| |||||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 477 atgagctggaatgccaatagcaacaacacccccaaaaattagctt-cacgcgatgcacac 419
Query: 171 aacttctggtctatgtatgacagaggattttatactgatctgtcataatggtacagaaat 230
|||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 418 aacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacagaaat 359
Query: 231 agaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaactg 290
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 358 acaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaaatg 299
Query: 291 atcatatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcagaggt 350
|||||||||||||||||||||||| | |||||||||||| || ||||||||||||
Sbjct: 298 atcatatgtttgctccacttccctat-ttgatgctttgg------aaaatattcagaggt 246
Query: 351 ctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattggaggg 410
|||||||| ||||||||||||||||||||||| || || ||||| || |||||||||||
Sbjct: 245 ctgtctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattggagga 186
Query: 411 atcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatcagatata 470
|| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 185 attgcagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatcagatata 126
Query: 471 gaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgtag 530
||||||||||||||||||| |||||| ||||| ||||| |||||||||| ||| ||||||
Sbjct: 125 gaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggctctgagtaattgtag 66
Query: 531 ttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaaca 590
|| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 65 tttgtgcggacatctttgtagccatcatgcctgtcagggccagccaccattgctccaaca 6
Query: 591 aggat 595
|||||
Sbjct: 5 aggat 1
>gb|BI098162.1|BI098162 IP1_32_H05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 535
Score = 656 bits (331), Expect = 0.0
Identities = 493/541 (91%), Gaps = 12/541 (2%)
Strand = Plus / Minus
Query: 50 atgaaaagtcactcctataaca--atttgtaaaggtacaatttctacaaaaaataacttc 107
|||||||||||||||||||| | |||||||||||| | ||||||||||||| ||||||
Sbjct: 532 atgaaaagtcactcctataaaataatttgtaaaggtgccatttctacaaaaag-aacttc 474
Query: 108 acacatgagcaggaatgccaacagcaacaagacccc-aaaaattagctttcacgcgatgc 166
|||||||||| |||||||||| |||||||| ||||| |||||||||||| ||||||||||
Sbjct: 473 acacatgagctggaatgccaatagcaacaacacccccaaaaattagctt-cacgcgatgc 415
Query: 167 acacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtacag 226
|||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 414 acacaacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacag 355
Query: 227 aaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 286
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaatacaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 295
Query: 287 actgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcag 346
| |||||||||||||||||||||||||| | |||||||||||| || ||||||||
Sbjct: 294 aatgatcatatgtttgctccacttccctat-ttgatgctttgg------aaaatattcag 242
Query: 347 aggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattgg 406
|||||||||||| ||||||||||||||||||||||| || || ||||| || ||||||||
Sbjct: 241 aggtctgtctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattgg 182
Query: 407 agggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatcaga 466
||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 181 aggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatcaga 122
Query: 467 tatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagtt 526
||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| ||| ||
Sbjct: 121 tatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggctctgagtaatt 62
Query: 527 gtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctcc 586
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 61 gtagtttgtgcggacatctttgtagccatcatgcctgtcagggccagccaccattgctcc 2
Query: 587 a 587
|
Sbjct: 1 a 1
>gb|BF587892.1|BF587892 FM1_34_B12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 645
Score = 648 bits (327), Expect = 0.0
Identities = 511/565 (90%), Gaps = 13/565 (2%)
Strand = Plus / Minus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 556 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 497
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccca- 144
||||||||||||| |||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 496 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcagcaacacccccc 438
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 437 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 379
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 378 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 319
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 318 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 260
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 259 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 206
Query: 385 g-cggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccg 443
| || ||||| || ||||||||||| || |||||||||||||||||||| || ||||||
Sbjct: 205 gtggggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccg 146
Query: 444 aaccgtccggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgcc 503
|||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 145 aaccgtccagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgct 86
Query: 504 gcaagggtaggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctg 563
||||| |||||||||| ||| |||||||| |||||||||||||||||||| ||| |||||
Sbjct: 85 gcaagagtaggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcctg 26
Query: 564 tcagggccagccaccattgctccaa 588
|||||||||||||||||||||||||
Sbjct: 25 tcagggccagccaccattgctccaa 1
>gb|BG048495.1|BG048495 OV1_14_C05.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 542
Score = 644 bits (325), Expect = 0.0
Identities = 485/532 (91%), Gaps = 11/532 (2%)
Strand = Plus / Minus
Query: 71 aatttgtaaaggtacaatttctacaaaaaataacttcacacatgagcaggaatgccaaca 130
||||||||||||| | ||||||||||||| ||||| |||||||||| |||||||||| |
Sbjct: 522 aatttgtaaaggtgccatttctacaaaaag-aactt-acacatgagctggaatgccaata 465
Query: 131 gcaacaagacccc-aaaaattagctttcacgcgatgcacacaacttctggtctatgtatg 189
||||||| ||||| |||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct: 464 gcaacaacacccccaaaaattagctt-cacgcgatgcacacaacttccgatctatgtttg 406
Query: 190 acagaggattttatactgatctgtcataatggtacagaaatagaagctctataagcttat 249
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 405 acagaggattttatactgatctgtcatacgggtacagaaatacaagctctataagcttat 346
Query: 250 gctgtccgctttcctgttcctggcctttgctgtaccaactgatcatatgtttgctccact 309
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 345 gctgtccgctttcctgttcctggcctttgctgtaccaaatgatcatatgtttgctccact 286
Query: 310 tccctgtgttgatgctttgggggaaaaatatattcagaggtctgtctctctatggtttcc 369
||||| | |||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 285 tccctat-ttgatgctttgg------aaaatattcagaggtctgtctctttatggtttcc 233
Query: 370 atgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaagatggtgt 429
||||||||||||| || || ||||| || ||||||||||| || ||||||||||||||||
Sbjct: 232 atgctgatggcggtggtgggggtgttgggaacattggaggaattgcagagaagatggtgt 173
Query: 430 tcttgtcgatgccgaaccgtccggttttgatatcagatatagaaatcagtgctgcaacca 489
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 172 tcttatcaatgccgaaccgtccagttttgatatcagatatagaaatcagtgctgcaacca 113
Query: 490 gaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcgtgcggacatctttgt 549
|||||| ||||| ||||| |||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 112 aaccagcatttgctgcaagagtaggctctgagtaattgtagtttgtgcggacatctttgt 53
Query: 550 agccgtcacgcctgtcagggccagccaccattgctccaacaaggatgttagg 601
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 52 agccatcatgcctgtcagggccagccaccattgctccaacaaggatattagg 1
>gb|CL175875.1|CL175875 104_381_10892754_116_31765_354 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892754, DNA
sequence
Length = 733
Score = 632 bits (319), Expect = e-179
Identities = 459/507 (90%), Gaps = 7/507 (1%)
Strand = Plus / Minus
Query: 263 ctgttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgat 322
||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct: 733 ctgttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgat 675
Query: 323 gctttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcgg 382
||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 674 gctttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcgg 621
Query: 383 cggcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgcc 442
|| || ||||| || ||||||||||| || |||||||||||||||||||| || |||||
Sbjct: 620 tggtgggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgcc 561
Query: 443 gaaccgtccggttttgatatcagatatagaaatcagtgctgcaaccagaccagcgtttgc 502
||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 560 gaaccgtccagttttgatatcagatatagaaatcagtgctgcaaccaaaccagcatttgc 501
Query: 503 cgcaagggtaggctctgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcct 562
||||| |||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||
Sbjct: 500 tgcaagagtaggctctgagtaattgtagtttgtgcggacatctttgtagccatcatgcct 441
Query: 563 gtcagggccagccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccct 622
||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||
Sbjct: 440 gtcagggccagccaccattgctccaacaaggatattagggtttgccttttttgtatccct 381
Query: 623 ccatttgtaacctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctct 682
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct: 380 ccatttgtaacctcctttgcatccatacttgacgccattatgaggtattgatgcacctct 321
Query: 683 gtggtgagggcgcttcgggtacttgtttncgaaacccacancgtagctcatcttcaatgg 742
||| |||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||
Sbjct: 320 gtgatgagggcgcttcgggtacttgtttccaaaacccacaacgtagctcatctttaatgg 261
Query: 743 gttcttnnnnnggatgtagtcaagctg 769
|||||| ||||||| ||||||||
Sbjct: 260 gttctttccaaggatgtaatcaagctg 234
>gb|AW746192.1|AW746192 WS1_40_A04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 581
Score = 567 bits (286), Expect = e-160
Identities = 393/431 (91%)
Strand = Plus / Minus
Query: 339 atattcagaggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcgga 398
|||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct: 563 atattcagaggtctgtctctttatggtttccatgctgatggcggtggtgggggtgttggg 504
Query: 399 aacattggagggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttg 458
||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 503 aacattggaggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttg 444
Query: 459 atatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctct 518
||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||
Sbjct: 443 atatcagatatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggctct 384
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
| ||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 383 gagtaattgtagtttgtgcggacatctttgtagccatcatgcctgtcagggccagccacc 324
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||
Sbjct: 323 attgctccaacaaggatattagggtttgccttttttgtatccctccatttgtaacctcct 264
Query: 639 ttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttc 698
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 263 ttgcatccatacttgacgccattatgaggtattgatgcacctctgtgatgagggcgcttc 204
Query: 699 gggtacttgtttncgaaacccacancgtagctcatcttcaatgggttcttnnnnnggatg 758
|||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||||
Sbjct: 203 gggtacttgtttccaaaacccacaacgtagctcatctttaatgggttctttccaaggatg 144
Query: 759 tagtcaagctg 769
|| ||||||||
Sbjct: 143 taatcaagctg 133
>gb|BI075695.1|BI075695 IP1_24_A08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 457
Score = 533 bits (269), Expect = e-150
Identities = 418/462 (90%), Gaps = 13/462 (2%)
Strand = Plus / Minus
Query: 50 atgaaaagtcactcctataaca--atttgtaaaggtacaatttctacaaaaaataacttc 107
|||||||||||||||||||| | |||||||||||| | ||||||||||||| | |||
Sbjct: 454 atgaaaagtcactcctataaaataatttgtaaaggtgccatttctacaaaaagaa--ttc 397
Query: 108 acacatgagcaggaatgccaacagcaacaagacccc-aaaaattagctttcacgcgatgc 166
|||||||||| |||||||||| |||||||| ||||| |||||||||||| ||||||||||
Sbjct: 396 acacatgagctggaatgccaatagcaacaacacccccaaaaattagctt-cacgcgatgc 338
Query: 167 acacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtacag 226
|||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 337 acacaacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacag 278
Query: 227 aaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 286
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaatacaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 218
Query: 287 actgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcag 346
| |||||||||||||||||||||||||| | |||||||||||| || ||||||||
Sbjct: 217 aatgatcatatgtttgctccacttccctat-ttgatgctttgg------aaaatattcag 165
Query: 347 aggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattgg 406
|||||||||||| ||||||||||||||||||||||| || || ||||| || ||||||||
Sbjct: 164 aggtctgtctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattgg 105
Query: 407 agggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatcaga 466
||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 104 aggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatcaga 45
Query: 467 tatagaaatcagtgctgcaaccagaccagcgtttgccgcaag 508
||||||||||||||||||||||| |||||| ||||| |||||
Sbjct: 44 tatagaaatcagtgctgcaaccaaaccagcatttgctgcaag 3
>gb|BI099533.1|BI099533 IP1_43_D11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 533 bits (269), Expect = e-150
Identities = 423/467 (90%), Gaps = 13/467 (2%)
Strand = Plus / Minus
Query: 51 tgaaaagtcactc-ctat--aacaatttgtaaaggtacaatttctacaaaaaataacttc 107
||||||||||||| |||| || ||||||||||||| | |||||||| ||||| ||||||
Sbjct: 458 tgaaaagtcactcnctataaaataatttgtaaaggtgccatttctac-aaaaagaacttc 400
Query: 108 acacatgagcaggaatgccaacagcaacaaga-ccccaaaaattagctttcacgcgatgc 166
|||||||||| |||||||||| |||||||| | |||||||||||||| ||||||||||||
Sbjct: 399 acacatgagctggaatgccaatagcaacaacacccccaaaaattagc-ttcacgcgatgc 341
Query: 167 acacaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtacag 226
|||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 340 acacaacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacag 281
Query: 227 aaatagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 286
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaatacaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtacca 221
Query: 287 actgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcag 346
| |||||||||||||||||||||||||| | |||||||||||| || ||||||||
Sbjct: 220 aatgatcatatgtttgctccacttccctat-ttgatgctttgg------aaaatattcag 168
Query: 347 aggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattgg 406
|||||||||||| ||||||||||||||||||||||| || || ||||| || ||||||||
Sbjct: 167 aggtctgtctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattgg 108
Query: 407 agggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatcaga 466
||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 107 aggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatcaga 48
Query: 467 tatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtag 513
||||||||||||||||||||||| |||||| ||||| ||||| ||||
Sbjct: 47 tatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtag 1
>gb|BG054019.1|BG054019 OV2_1_C08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 424
Score = 517 bits (261), Expect = e-145
Identities = 378/416 (90%), Gaps = 7/416 (1%)
Strand = Plus / Minus
Query: 295 tatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcagaggtctgt 354
|||||||||||||||||||| | |||||||||||| || ||||||||||||||||
Sbjct: 416 tatgtttgctccacttccctat-ttgatgctttgg------aaaatattcagaggtctgt 364
Query: 355 ctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcg 414
|||| ||||||||||||||||||||||| || || ||||| || ||||||||||| || |
Sbjct: 363 ctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattggaggaattg 304
Query: 415 cagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatcagatatagaaa 474
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 303 cagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatcagatatagaaa 244
Query: 475 tcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgtagttcg 534
||||||||||||||| |||||| ||||| ||||| |||||||||| ||| |||||||| |
Sbjct: 243 tcagtgctgcaaccaaaccagcatttgctgcaagagtaggctctgagtaattgtagtttg 184
Query: 535 tgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaacaagga 594
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgcggacatctttgtagccatcatgcctgtcagggccagccaccattgctccaacaagga 124
Query: 595 tgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccatacttga 654
| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 123 tattagggtttgccttttttgtatccctccatttgtaacctcctttgcatccatacttga 64
Query: 655 cgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgttt 710
|||| |||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 63 cgccactatgaggtattgatgcacctctgtgatgagggcgcttcgggtacttgttt 8
>gb|BG054010.1|BG054010 OV2_1_B06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 452
Score = 502 bits (253), Expect = e-140
Identities = 410/455 (90%), Gaps = 13/455 (2%)
Strand = Plus / Minus
Query: 57 gtcactcctataaca--atttgtaaaggtacaatttctacaaaaaataacttcacacatg 114
||||||||||||| | ||||| ||||| | ||||||||||||| ||||| |||||||
Sbjct: 450 gtcactcctataaaataatttgacaaggtgccatttctacaaaaag-aactt-acacatg 393
Query: 115 agcaggaatgccaacagcaacaagacccc-aaaaattagctttcacgcgatgcacacaac 173
||| |||||||||| |||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct: 392 agctggaatgccaatagcaacaacacccccaaaaattagctt-cacgcgatgcacacaac 334
Query: 174 ttctggtctatgtatgacagaggattttatactgatctgtcataatggtacagaaataga 233
||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 333 ttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacagaaataca 274
Query: 234 agctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaactgatc 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 273 agctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaaatgatc 214
Query: 294 atatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcagaggtctg 353
||||||||||||||||||||| | |||||||||||| || |||||||||||||||
Sbjct: 213 atatgtttgctccacttccctat-ttgatgctttgg------aaaatattcagaggtctg 161
Query: 354 tctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatc 413
||||| ||||||||||||||||||||||| || || ||||| || ||||||||||| ||
Sbjct: 160 tctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattggaggaatt 101
Query: 414 gcagagaagatggtgttcttgtcgatgccgaaccgtccggttttgatatcagatatagaa 473
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct: 100 gcagagaagatggtgttcttatcaatgccgaaccgtccagttttgatatcagatatagaa 41
Query: 474 atcagtgctgcaaccagaccagcgtttgccgcaag 508
|||||||||||||||| |||||| ||||| |||||
Sbjct: 40 atcagtgctgcaaccaaaccagcatttgctgcaag 6
>gb|CF072581.1|CF072581 FE1_3_H04.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_3_H04_A002 5', mRNA sequence
Length = 433
Score = 474 bits (239), Expect = e-132
Identities = 380/421 (90%), Gaps = 12/421 (2%)
Strand = Plus / Plus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 22 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 81
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-a 144
||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 82 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacaccccca 140
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 141 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 199
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 259
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 260 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 318
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 319 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 372
Query: 385 gcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgccga 444
| || ||||| || ||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 373 gtgggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgccga 432
Query: 445 a 445
|
Sbjct: 433 a 433
>gb|CN134402.1|CN134402 OX1_26_D08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_D08_A002 3', mRNA sequence
Length = 476
Score = 468 bits (236), Expect = e-130
Identities = 377/418 (90%), Gaps = 12/418 (2%)
Strand = Plus / Minus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 409 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 350
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-a 144
||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 349 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacaccccca 291
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 290 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 232
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 231 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 172
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 171 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 113
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 112 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 59
Query: 385 gcggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgcc 442
| || ||||| || ||||||||||| || |||||||||||||||||||| || |||||
Sbjct: 58 gtgggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgcc 1
>gb|BE918655.1|BE918655 FM1_2_H09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 418
Score = 458 bits (231), Expect = e-127
Identities = 369/409 (90%), Gaps = 12/409 (2%)
Strand = Plus / Minus
Query: 54 aaagtcactcctataaca--atttgtaaaggtacaatttctacaaaaaataacttcacac 111
|||||||||||||||| | |||||||||||| | ||||||||||||| ||||||||||
Sbjct: 400 aaagtcactcctataaaataatttgtaaaggtgccatttctacaaaaag-aacttcacac 342
Query: 112 atgagcaggaatgccaacagcaacaagacccc-aaaaattagctttcacgcgatgcacac 170
|||||| |||||||||| |||||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 341 atgagctggaatgccaatagcaacaacacccccaaaaattagctt-cacgcgatgcacac 283
Query: 171 aacttctggtctatgtatgacagaggattttatactgatctgtcataatggtacagaaat 230
|||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 282 aacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacagaaat 223
Query: 231 agaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaactg 290
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 222 acaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaaatg 163
Query: 291 atcatatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcagaggt 350
|||||||||||||||||||||||| | |||||||||||| || ||||||||||||
Sbjct: 162 atcatatgtttgctccacttccctat-ttgatgctttgg------aaaatattcagaggt 110
Query: 351 ctgtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattggaggg 410
|||||||| ||||||||||||||||||||||| || || ||||| || |||||||||||
Sbjct: 109 ctgtctctttatggtttccatgctgatggcggtggtgggggtgttgggaacattggagga 50
Query: 411 atcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttga 459
|| |||||||||||||||||||| || |||||||||||| | |||||||
Sbjct: 49 attgcagagaagatggtgttcttatcaatgccgaaccgtgcagttttga 1
>gb|BF481348.1|BF481348 FM1_18_H06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 492
Score = 438 bits (221), Expect = e-121
Identities = 375/419 (89%), Gaps = 13/419 (3%)
Strand = Plus / Minus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 410 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 351
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccca- 144
||||||||||||| |||||||||||||||| |||||||||| |||| ||| |||||
Sbjct: 350 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcagcaacacccccc 292
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 291 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 233
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 232 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 173
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 172 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 114
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 113 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 60
Query: 385 g-cggcggtgtcggaaacattggagggatcgcagagaagatggtgttcttgtcgatgcc 442
| || ||||| || ||||||||||| || |||||||||||||||||||| || |||||
Sbjct: 59 gtggggggtgttgggaacattggaggaattgcagagaagatggtgttcttatcaatgcc 1
>gb|CX613230.1|CX613230 GABR1_7_B06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_B06_A002 3', mRNA sequence
Length = 501
Score = 424 bits (214), Expect = e-117
Identities = 343/380 (90%), Gaps = 12/380 (3%)
Strand = Plus / Minus
Query: 28 gtcacacaaatgctttactactatgaaaagtcactcctataaca--atttgtaaaggtac 85
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| |
Sbjct: 371 gtcacacaaattctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgc 312
Query: 86 aatttctacaaaaaataacttcacacatgagcaggaatgccaacagcaacaagacccc-a 144
||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||| |
Sbjct: 311 catttctacaaaaag-aacttcacacatgagctggaatgccaatagcaacaacaccccca 253
Query: 145 aaaattagctttcacgcgatgcacacaacttctggtctatgtatgacagaggattttata 204
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 252 aaaattagctt-cacgcgatgcacacaacttccgatctatgtttgacagaggattttata 194
Query: 205 ctgatctgtcataatggtacagaaatagaagctctataagcttatgctgtccgctttcct 264
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 193 ctgatctgtcatacgggtacagaaatacaagctctataagcttatgctgtccgctttcct 134
Query: 265 gttcctggcctttgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgc 324
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 133 gttcctggcctttgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgc 75
Query: 325 tttgggggaaaaatatattcagaggtctgtctctctatggtttccatgctgatggcggcg 384
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 74 tttgg------aaaatattcagaggtctgtctctttatggtttccatgctgatggcggtg 21
Query: 385 gcggcggtgtcggaaacatt 404
| || ||||| || ||||||
Sbjct: 20 gtgggggtgttgggaacatt 1
>gb|DR831463.2|DR831463 MM79 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 304
Score = 420 bits (212), Expect = e-116
Identities = 281/304 (92%)
Strand = Plus / Minus
Query: 399 aacattggagggatcgcagagaagatggtgttcttgtcgatgccgaaccgtccggttttg 458
||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 304 aacattggaggaattgcagagaagatggtgttcttatcaatgccgaaccgtccagttttg 245
Query: 459 atatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctct 518
||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||
Sbjct: 244 atatcagatatagaaatcagtgctgcaaccaaaccagcatttgctgcaagagtaggctct 185
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
| ||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 184 gagtaattgtagtttgtgcggacatctttgtagccatcatacctgtcagggccagccacc 125
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||
Sbjct: 124 attgctccaacaaggatattagggtttgccttttttgtatccctccatttgtaacctcct 65
Query: 639 ttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttc 698
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 64 ttgcatccatacttgacgccattatgaggtattgatgcacctctgtgatgagggcgcttc 5
Query: 699 gggt 702
||||
Sbjct: 4 gggt 1
>gb|CX621252.1|CX621252 GABR1_57_B05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_B05_A002 3', mRNA sequence
Length = 362
Score = 406 bits (205), Expect = e-111
Identities = 331/367 (90%), Gaps = 12/367 (3%)
Strand = Plus / Minus
Query: 40 ctttactactatgaaaagtcactcctataaca--atttgtaaaggtacaatttctacaaa 97
|||||||| |||||||||||||||||||| | |||||||||||| | |||||||||||
Sbjct: 358 ctttactatgatgaaaagtcactcctataaaataatttgtaaaggtgccatttctacaaa 299
Query: 98 aaataacttcacacatgagcaggaatgccaacagcaacaagacccc-aaaaattagcttt 156
|| |||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||
Sbjct: 298 aag-aacttcacacatgagctggaatgccaatagcaacaacacccccaaaaattagctt- 241
Query: 157 cacgcgatgcacacaacttctggtctatgtatgacagaggattttatactgatctgtcat 216
|||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct: 240 cacgcgatgcacacaacttccgatctatgtttgacagaggattttatactgatctgtcat 181
Query: 217 aatggtacagaaatagaagctctataagcttatgctgtccgctttcctgttcctggcctt 276
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 acgggtacagaaatacaagctctataagcttatgctgtccgctttcctgttcctggcctt 121
Query: 277 tgctgtaccaactgatcatatgtttgctccacttccctgtgttgatgctttgggggaaaa 336
||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 120 tgctgtaccaaatgatcatatgtttgctccacttccctat-ttgatgctttgg------a 68
Query: 337 atatattcagaggtctgtctctctatggtttccatgctgatggcggcggcggcggtgtcg 396
| |||||||||||||||||||| ||||||||||||||||||||||| || || ||||| |
Sbjct: 67 aaatattcagaggtctgtctctttatggtttccatgctgatggcggtggtgggggtgttg 8
Query: 397 gaaacat 403
| |||||
Sbjct: 7 ggaacat 1
>gb|BG739401.1|BG739401 EM1_82_E02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 313
Score = 389 bits (196), Expect = e-106
Identities = 280/307 (91%), Gaps = 7/307 (2%)
Strand = Plus / Minus
Query: 188 tgacagaggattttatactgatctgtcataatggtacagaaatagaagctctataagctt 247
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 310 tgacagaggattttatactgatctgtcatacgggtacagaaatacaagctctataagctt 251
Query: 248 atgctgtccgctttcctgttcctggcctttgctgtaccaactgatcatatgtttgctcca 307
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 250 atgctgtccgctttcctgttcctggcctttgctgtaccaaatgatcatatgtttgctcca 191
Query: 308 cttccctgtgttgatgctttgggggaaaaatatattcagaggtctgtctctctatggttt 367
||||||| | |||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 190 cttccctat-ttgatgctttgg------aaaatattcagaggtctgtctctttatggttt 138
Query: 368 ccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagagaagatggt 427
||||||||||||||| || || ||||| || ||||||||||| || |||||||| |||||
Sbjct: 137 ccatgctgatggcggtggtgggggtgttgggaacattggaggaattgcagagaacatggt 78
Query: 428 gttcttgtcgatgccgaaccgtccggttttgatatcagatatagaaatcagtgctgcaac 487
|||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 77 gttcttatcaatgccgaaccgtccagttttgatatcatatatagaaatcagtgctgcaac 18
Query: 488 cagacca 494
|| ||||
Sbjct: 17 caaacca 11
>gb|AW284400.1|AW284400 LG1_289_B06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 300
Score = 345 bits (174), Expect = 4e-093
Identities = 259/281 (92%), Gaps = 6/281 (2%)
Strand = Plus / Minus
Query: 52 gaaaagtcactcctataaca--atttgtaaaggtacaatttctacaaaaaataacttcac 109
|||||||||||||||||| | ||||||||||| | ||||||||||||| ||||||||
Sbjct: 296 gaaaagtcactcctataaaataatttgtaaaggggccatttctacaaaaag-aacttcac 238
Query: 110 acatgagcaggaatgccaacagcaacaagacccc-aaaaattagctttcacgcgatgcac 168
|||||||| |||||||||| |||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 237 acatgagctggaatgccaatagcaacaacacccccaaaaattagctt-cacgcgatgcac 179
Query: 169 acaacttctggtctatgtatgacagaggattttatactgatctgtcataatggtacagaa 228
|||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 178 acaacttccgatctatgtttgacagaggattttatactgatctgtcatacgggtacagaa 119
Query: 229 atagaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaac 288
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atacaagctctataagcttatgctgtccgctttcctgttcctggcctttgctgtaccaaa 59
Query: 289 tgatcatatgtttgctccacttccctgtgttgatgctttgg 329
|||||||||||||||||||||||||| | ||||||||||||
Sbjct: 58 tgatcatatgtttgctccacttccctat-ttgatgctttgg 19
>gb|BF481389.1|BF481389 FM1_18_E02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 260 bits (131), Expect = 2e-067
Identities = 178/196 (90%)
Strand = Plus / Minus
Query: 574 ccaccattgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaac 633
|||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct: 532 ccaccattgctccaacaaggatattagggtttgccttttttgtatccctccatttgtaac 473
Query: 634 ctcctttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggc 693
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 472 ctcctttgcatccatacttgacgccattatgaggtattgatgcacctctgtgatgagggc 413
Query: 694 gcttcgggtacttgtttncgaaacccacancgtagctcatcttcaatgggttcttnnnnn 753
||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||
Sbjct: 412 gcttcgggtacttgtttccaaaacccacaacgtagctcatctttaatgggttctttccaa 353
Query: 754 ggatgtagtcaagctg 769
||||||| ||||||||
Sbjct: 352 ggatgtaatcaagctg 337
>gb|BF421490.1|BF421490 FM1_8_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 153
Score = 119 bits (60), Expect = 4e-025
Identities = 135/159 (84%), Gaps = 7/159 (4%)
Strand = Plus / Minus
Query: 293 catatgtttgctccacttccctgtgttgatgctttgggggaaaaatatattcagaggtct 352
|||||||| ||||||||||||| | |||||||||||| || ||||||||||||||
Sbjct: 153 catatgttcgctccacttccctat-ttgatgctttgg------aaaatattcagaggtct 101
Query: 353 gtctctctatggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggat 412
|||||| ||||||||||||||||||||||| || | ||||| || ||||||||||| ||
Sbjct: 100 gtctctttatggtttccatgctgatggcggtggtgagggtgttgggaacattggaggaat 41
Query: 413 cgcagagaagatggtgttcttgtcgatgccgaaccgtcc 451
||||| || ||||||||||| | ||||||||||||||
Sbjct: 40 tgcagataatatggtgttcttattaatgccgaaccgtcc 2
>gb|CW159691.1|CW159691 104_566_11149490_148_36423_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149490, DNA
sequence
Length = 659
Score = 61.9 bits (31), Expect = 9e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
|||||||| || ||| ||||| |||||||| | | |||| | | ||||||||||| |||
Sbjct: 192 gtgtagttataattcttgcgggcatctttgaacctgtcatggcgatcagggccagcaacc 251
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| || || || | ||| |||||||||| |||||| ||||||||||| || | ||||||
Sbjct: 252 atggcccctactatgatattagggtttggcttcttggtgtccctccacttccaccctcct 311
Query: 639 ttgcatccata 649
||||| |||||
Sbjct: 312 ttgcaaccata 322
>gb|CW163891.1|CW163891 104_571_11151698_116_36456_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151698, DNA
sequence
Length = 692
Score = 61.9 bits (31), Expect = 9e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
|||||||| || ||| ||||| |||||||| | | |||| | | ||||||||||| |||
Sbjct: 149 gtgtagttataattcttgcgggcatctttgaacctgtcatggcgatcagggccagcaacc 208
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| || || || | ||| |||||||||| |||||| ||||||||||| || | ||||||
Sbjct: 209 atggcccctactatgatattagggtttggcttcttggtgtccctccacttccaccctcct 268
Query: 639 ttgcatccata 649
||||| |||||
Sbjct: 269 ttgcaaccata 279
>gb|CW212992.1|CW212992 104_644_11191313_116_37026_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191313, DNA
sequence
Length = 633
Score = 61.9 bits (31), Expect = 9e-008
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
|||||||| || ||| ||||| |||||||| | | |||| | | ||||||||||| |||
Sbjct: 277 gtgtagttataattcttgcgggcatctttgaacctgtcatggcgatcagggccagcaacc 218
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| || || || | ||| |||||||||| |||||| ||||||||||| || | ||||||
Sbjct: 217 atggcccctactatgatattagggtttggcttcttggtgtccctccacttccaccctcct 158
Query: 639 ttgcatccata 649
||||| |||||
Sbjct: 157 ttgcaaccata 147
>gb|CW407797.1|CW407797 fsbb001f101g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101g18, DNA
sequence
Length = 731
Score = 61.9 bits (31), Expect = 9e-008
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
|||||||| || ||| ||||| |||||||| | | |||| | | ||||||||||| |||
Sbjct: 466 gtgtagttataattcttgcgggcatctttgaacctgtcatggcgatcagggccagcaacc 407
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| || || || | ||| |||||||||| |||||| ||||||||||| || | ||||||
Sbjct: 406 atggcccctactatgatattagggtttggcttcttggtgtccctccacttccaccctcct 347
Query: 639 ttgcatccata 649
||||| |||||
Sbjct: 346 ttgcaaccata 336
>gb|CW407798.1|CW407798 fsbb001f101g18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101g18, DNA
sequence
Length = 838
Score = 61.9 bits (31), Expect = 9e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
|||||||| || ||| ||||| |||||||| | | |||| | | ||||||||||| |||
Sbjct: 512 gtgtagttataattcttgcgggcatctttgaacctgtcatggcgatcagggccagcaacc 571
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| || || || | ||| |||||||||| |||||| ||||||||||| || | ||||||
Sbjct: 572 atggcccctactatgatattagggtttggcttcttggtgtccctccacttccaccctcct 631
Query: 639 ttgcatccata 649
||||| |||||
Sbjct: 632 ttgcaaccata 642
>gb|CL177806.1|CL177806 104_385_10894093_116_31914_157 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894093, DNA
sequence
Length = 485
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 372 gctgatggcggcggcggcggtg 393
||||||||||||||||||||||
Sbjct: 59 gctgatggcggcggcggcggtg 38
>gb|CW216644.1|CW216644 104_649_11195227_116_37125_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195227, DNA
sequence
Length = 666
Score = 44.1 bits (22), Expect = 0.021
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 698 cgggtacttgtttncgaaacccacancgtagctcatcttc 737
|||||||||||| |||| ||||| ||||||||||||||
Sbjct: 444 cgggtacttgttgccgaagcccaccacgtagctcatcttc 405
>gb|CW269890.1|CW269890 104_741_11402081_116_35322_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402081, DNA
sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.021
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 698 cgggtacttgtttncgaaacccacancgtagctcatcttc 737
|||||||||||| |||| ||||| ||||||||||||||
Sbjct: 538 cgggtacttgttgccgaagcccaccacgtagctcatcttc 499
>gb|CW336799.1|CW336799 104_836_11483793_148_36108_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483793, DNA
sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 372 gctgatggcggcggcggcggtg 393
||||||||||||||||||||||
Sbjct: 168 gctgatggcggcggcggcggtg 147
>gb|CW451021.1|CW451021 fsbb001f189o18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189o18, DNA
sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.021
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 698 cgggtacttgtttncgaaacccacancgtagctcatcttc 737
|||||||||||| |||| ||||| ||||||||||||||
Sbjct: 347 cgggtacttgttgccgaagcccaccacgtagctcatcttc 308
>gb|BE597670.1|BE597670 PI1_72_F08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 455
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 372 gctgatggcggcggcggcggtg 393
||||||||||||||||||||||
Sbjct: 231 gctgatggcggcggcggcggtg 252
>gb|BE599927.1|BE599927 PI1_77_A04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 311
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 372 gctgatggcggcggcggcggtg 393
||||||||||||||||||||||
Sbjct: 56 gctgatggcggcggcggcggtg 77
>gb|CW032228.1|CW032228 104_261_10501259_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501259, DNA
sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.082
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 377 tggcggcggcggcggtgtcgg 397
|||||||||||||||||||||
Sbjct: 402 tggcggcggcggcggtgtcgg 382
>gb|CW196051.1|CW196051 104_619_11180963_148_36803_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180963, DNA
sequence
Length = 200
Score = 42.1 bits (21), Expect = 0.082
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 377 tggcggcggcggcggtgtcgg 397
|||||||||||||||||||||
Sbjct: 182 tggcggcggcggcggtgtcgg 162
>gb|CW227802.1|CW227802 104_667_11206011_116_37243_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206011, DNA
sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.082
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 377 tggcggcggcggcggtgtcgg 397
|||||||||||||||||||||
Sbjct: 329 tggcggcggcggcggtgtcgg 309
>gb|CW268075.1|CW268075 104_738_11401085_116_35303_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401085, DNA
sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.082
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 377 tggcggcggcggcggtgtcgg 397
|||||||||||||||||||||
Sbjct: 313 tggcggcggcggcggtgtcgg 293
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 327,487
Number of Sequences: 832831
Number of extensions: 327487
Number of successful extensions: 134355
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134124
Number of HSP's gapped (non-prelim): 100
length of query: 845
length of database: 491,359,669
effective HSP length: 20
effective length of query: 825
effective length of database: 474,703,049
effective search space: 391630015425
effective search space used: 391630015425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)