BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.3
(885 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN129330.1|CN129330 RHOH1_34_G08.g1_A002 Acid- and alkal... 815 0.0
gb|CW220801.1|CW220801 104_655_11197555_116_37153_070 Sorgh... 737 0.0
gb|CN126243.1|CN126243 RHOH1_16_B03.b1_A002 Acid- and alkal... 726 0.0
gb|CN138952.1|CN138952 OX1_15_D09.b1_A002 Oxidatively-stres... 714 0.0
gb|CW220802.1|CW220802 104_655_11197555_148_37154_070 Sorgh... 698 0.0
gb|BE358732.1|BE358732 DG1_31_D02.g1_A002 Dark Grown 1 (DG1... 676 0.0
gb|BE355038.1|BE355038 DG1_10_B12.g1_A002 Dark Grown 1 (DG1... 668 0.0
gb|CN129246.1|CN129246 RHOH1_34_G08.b3_A002 Acid- and alkal... 666 0.0
gb|BG932930.1|BG932930 DG1_69_B03.g1_A002 Dark Grown 1 (DG1... 654 0.0
gb|BE355461.1|BE355461 DG1_114_C11.g1_A002 Dark Grown 1 (DG... 646 0.0
gb|CN125016.1|CN125016 RHOH1_8_H01.b1_A002 Acid- and alkali... 624 e-177
gb|CF072290.1|CF072290 FE1_7_F11.b1_A002 Iron-deficient see... 617 e-175
gb|CW436719.1|CW436719 fsbb001f153h11k0 Sorghum methylation... 607 e-172
gb|BE361202.1|BE361202 DG1_70_F03.g1_A002 Dark Grown 1 (DG1... 601 e-170
gb|BG103102.1|BG103102 RHIZ2_18_B11.g1_A003 Rhizome2 (RHIZ2... 589 e-166
gb|CD221354.1|CD221354 CCC1_54_F07.b1_A007 Callus culture/c... 589 e-166
gb|BG239851.1|BG239851 OV1_29_G11.g1_A002 Ovary 1 (OV1) Sor... 585 e-165
gb|BE355327.1|BE355327 DG1_114_H09.b1_A002 Dark Grown 1 (DG... 583 e-164
gb|BE355405.1|BE355405 DG1_114_H09.b2_A002 Dark Grown 1 (DG... 583 e-164
gb|BG412632.1|BG412632 OV2_36_H06.g1_A002 Ovary 2 (OV2) Sor... 571 e-161
gb|BE355472.1|BE355472 DG1_114_H09.g1_A002 Dark Grown 1 (DG... 569 e-160
gb|CD224791.1|CD224791 CCC1_36_B03.b1_A007 Callus culture/c... 567 e-160
gb|BG356951.1|BG356951 OV2_12_A10.g1_A002 Ovary 2 (OV2) Sor... 565 e-159
gb|BE592930.1|BE592930 WS1_92_B10.b1_A002 Water-stressed 1 ... 563 e-158
gb|CW297734.1|CW297734 104_780_11462198_148_35653_063 Sorgh... 557 e-157
gb|CW322470.1|CW322470 104_816_11476115_116_35953_044 Sorgh... 557 e-157
gb|CD223110.1|CD223110 CCC1_26_F03.b1_A007 Callus culture/c... 549 e-154
gb|CW388607.1|CW388607 fsbb001f073h01k0 Sorghum methylation... 547 e-154
gb|CD224320.1|CD224320 CCC1_33_H03.b1_A007 Callus culture/c... 543 e-153
gb|CX608397.1|CX608397 ANR1_38_H10.b1_A002 Anaerobic roots ... 519 e-145
gb|CX622505.1|CX622505 GABR1_64_H04.b2_A002 GA- or brassino... 515 e-144
gb|BE359598.1|BE359598 DG1_54_H12.g2_A002 Dark Grown 1 (DG1... 507 e-142
gb|BE367050.1|BE367050 PI1_42_D08.g2_A002 Pathogen induced ... 504 e-141
gb|CN131413.1|CN131413 RHOH1_48_A02.b1_A002 Acid- and alkal... 504 e-141
gb|BM318326.1|BM318326 PI1_77_C08.g9_A002 Pathogen induced ... 482 e-134
gb|AW745482.1|AW745482 WS1_35_G01.b1_A002 Water-stressed 1 ... 476 e-132
gb|BE360475.1|BE360475 DG1_63_E06.g1_A002 Dark Grown 1 (DG1... 476 e-132
gb|BG932961.1|BG932961 DG1_69_E04.g1_A002 Dark Grown 1 (DG1... 476 e-132
gb|BE356652.1|BE356652 DG1_126_A06.g1_A002 Dark Grown 1 (DG... 474 e-132
gb|CD431991.1|CD431991 ETH1_12_C08.b1_A002 Ethylene-treated... 474 e-132
gb|CF072697.1|CF072697 FE1_25_E09.b1_A002 Iron-deficient se... 464 e-129
gb|CD426231.1|CD426231 SA1_19_D09.b1_A002 Salicylic acid-tr... 456 e-126
gb|BE360126.1|BE360126 DG1_61_D02.g1_A002 Dark Grown 1 (DG1... 426 e-117
gb|BE360152.1|BE360152 DG1_61_D02.g2_A002 Dark Grown 1 (DG1... 422 e-116
gb|BI211453.1|BI211453 IP1_57_A06.g1_A002 Immature pannicle... 420 e-116
gb|BG158592.1|BG158592 RHIZ2_42_E08.g1_A003 Rhizome2 (RHIZ2... 406 e-111
gb|AW922837.1|AW922837 DG1_46_C11.g1_A002 Dark Grown 1 (DG1... 394 e-108
gb|BF585486.1|BF585486 FM1_23_B02.g1_A003 Floral-Induced Me... 385 e-105
gb|CW322471.1|CW322471 104_816_11476115_148_35952_044 Sorgh... 383 e-104
gb|BE366988.1|BE366988 PI1_42_D08.g1_A002 Pathogen induced ... 383 e-104
gb|AW565319.1|AW565319 LG1_342_A09.g1_A002 Light Grown 1 (L... 369 e-100
gb|BE360990.1|BE360990 DG1_68_E08.g1_A002 Dark Grown 1 (DG1... 365 5e-099
gb|AW923056.1|AW923056 DG1_48_F12.g1_A002 Dark Grown 1 (DG1... 363 2e-098
gb|BE360375.1|BE360375 DG1_63_E06.b1_A002 Dark Grown 1 (DG1... 355 4e-096
gb|CF427528.1|CF427528 PH1_16_G05.b1_A002 Phosphorous-defic... 355 4e-096
gb|CW297733.1|CW297733 104_780_11462198_116_35649_063 Sorgh... 353 2e-095
gb|BE360089.1|BE360089 DG1_61_D02.b1_A002 Dark Grown 1 (DG1... 347 1e-093
gb|BG947157.1|BG947157 IP1_3_C03.g1_A002 Immature pannicle ... 345 4e-093
gb|CF431298.1|CF431298 NIT1_5_B12.b1_A002 Nitrogen-deficien... 343 2e-092
gb|BI245526.1|BI245526 IP1_66_E07.g1_A002 Immature pannicle... 341 7e-092
gb|CD426221.1|CD426221 SA1_19_A02.b1_A002 Salicylic acid-tr... 341 7e-092
gb|AW677269.1|AW677269 DG1_6_C02.g1_A002 Dark Grown 1 (DG1)... 337 1e-090
gb|CD220727.1|CD220727 CCC1_69_D11.b1_A007 Callus culture/c... 337 1e-090
gb|BG054269.1|BG054269 OV2_4_D10.g1_A002 Ovary 2 (OV2) Sorg... 333 2e-089
gb|BE355572.1|BE355572 DG1_115_C11.b1_A002 Dark Grown 1 (DG... 325 4e-087
gb|BG049661.1|BG049661 EM1_7_D05.g1_A002 Embryo 1 (EM1) Sor... 317 1e-084
gb|BI099244.1|BI099244 IP1_40_D02.g1_A002 Immature pannicle... 315 4e-084
gb|BI246012.1|BI246012 IP1_66_E07.b1_A002 Immature pannicle... 315 4e-084
gb|CF074261.1|CF074261 FE1_23_H08.b1_A002 Iron-deficient se... 305 4e-081
gb|AW923013.1|AW923013 DG1_48_F12.b1_A002 Dark Grown 1 (DG1... 287 9e-076
gb|BI075504.1|BI075504 IP1_21_D02.g1_A002 Immature pannicle... 281 5e-074
gb|AW677701.1|AW677701 WS1_10_H08.g1_A002 Water-stressed 1 ... 274 1e-071
gb|BG047581.1|BG047581 OV1_25_F09.b1_A002 Ovary 1 (OV1) Sor... 274 1e-071
gb|BG102506.1|BG102506 RHIZ2_33_H09.g1_A003 Rhizome2 (RHIZ2... 274 1e-071
gb|BG948544.1|BG948544 IP1_10_H11.b1_A002 Immature pannicle... 274 1e-071
gb|BE359207.1|BE359207 DG1_39_C05.g1_A002 Dark Grown 1 (DG1... 258 8e-067
gb|BG047939.1|BG047939 OV1_25_F09.g1_A002 Ovary 1 (OV1) Sor... 258 8e-067
gb|BG932956.1|BG932956 DG1_69_D11.g1_A002 Dark Grown 1 (DG1... 258 8e-067
gb|BE366341.1|BE366341 PI1_32_D08.g1_A002 Pathogen induced ... 252 5e-065
gb|BF656584.1|BF656584 FM1_51_H09.g1_A003 Floral-Induced Me... 246 3e-063
gb|CN135116.1|CN135116 OX1_30_E02.g1_A002 Oxidatively-stres... 246 3e-063
gb|BE361256.1|BE361256 DG1_70_D10.g1_A002 Dark Grown 1 (DG1... 244 1e-062
gb|BG948233.1|BG948233 IP1_10_H11.g1_A002 Immature pannicle... 244 1e-062
gb|BE362573.1|BE362573 DG1_87_D07.g1_A002 Dark Grown 1 (DG1... 238 7e-061
gb|CD204024.1|CD204024 HS1_3_A02.b1_A012 Heat-shocked seedl... 234 1e-059
gb|AW285466.2|AW285466 LG1_251_H09.g1_A002 Light Grown 1 (L... 232 4e-059
gb|BG273178.1|BG273178 OV2_27_G08.g1_A002 Ovary 2 (OV2) Sor... 232 4e-059
gb|BI351177.1|BI351177 IP1_70_H04.g1_A002 Immature pannicle... 232 4e-059
gb|CW221524.1|CW221524 104_656_11197953_148_37453_037 Sorgh... 222 4e-056
gb|BI099203.1|BI099203 IP1_39_D08.g1_A002 Immature pannicle... 222 4e-056
gb|BI141296.1|BI141296 IP1_53_H08.g1_A002 Immature pannicle... 222 4e-056
gb|BF585576.1|BF585576 FM1_23_B02.b1_A003 Floral-Induced Me... 216 3e-054
gb|BG947536.1|BG947536 IP1_5_F11.g1_A002 Immature pannicle ... 214 1e-053
gb|BI141482.1|BI141482 IP1_56_F09.g1_A002 Immature pannicle... 214 1e-053
gb|BI351078.1|BI351078 IP1_69_E08.g1_A002 Immature pannicle... 206 3e-051
gb|CN133790.1|CN133790 OX1_18_H01.b1_A002 Oxidatively-stres... 202 4e-050
gb|CX619982.1|CX619982 GABR1_49_D04.b1_A002 GA- or brassino... 192 4e-047
gb|BG159391.1|BG159391 OV2_7_C05.g1_A002 Ovary 2 (OV2) Sorg... 190 2e-046
gb|CN134444.1|CN134444 OX1_26_H12.b1_A002 Oxidatively-stres... 186 2e-045
gb|BG052269.1|BG052269 RHIZ2_12_D09.g1_A003 Rhizome2 (RHIZ2... 182 4e-044
gb|BF704912.1|BF704912 FM1_46_B04.g2_A003 Floral-Induced Me... 180 1e-043
gb|CW234030.1|CW234030 104_687_11213762_148_37379_005 Sorgh... 163 3e-038
gb|AW672574.1|AW672574 LG1_360_G08.g1_A002 Light Grown 1 (L... 159 5e-037
gb|AW672134.1|AW672134 LG1_357_D06.b1_A002 Light Grown 1 (L... 153 3e-035
gb|CW388606.1|CW388606 fsbb001f073h01f0 Sorghum methylation... 149 5e-034
gb|CW314845.1|CW314845 104_805_11472043_148_35821_070 Sorgh... 139 5e-031
gb|BE594234.1|BE594234 WS1_103_H10.b1_A002 Water-stressed 1... 139 5e-031
gb|BI075620.1|BI075620 IP1_23_A04.g1_A002 Immature pannicle... 133 3e-029
gb|CW150733.1|CW150733 104_551_11143570_116_36314_043 Sorgh... 109 4e-022
gb|CW460986.1|CW460986 fsbb001f208h04f0 Sorghum methylation... 109 4e-022
gb|CL164480.1|CL164480 104_358_10807939_114_31814_307 Sorgh... 107 2e-021
gb|CW091315.1|CW091315 104_453_10998477_114_33030_093 Sorgh... 107 2e-021
gb|CW176959.1|CW176959 104_590_11158763_148_36591_046 Sorgh... 107 2e-021
gb|BE358396.1|BE358396 DG1_29_B04.g1_A002 Dark Grown 1 (DG1... 107 2e-021
gb|BE358841.1|BE358841 DG1_32_D06.g1_A002 Dark Grown 1 (DG1... 107 2e-021
gb|BE360494.1|BE360494 DG1_63_B03.g1_A002 Dark Grown 1 (DG1... 107 2e-021
gb|BE918444.1|BE918444 OV1_3_G09.g1_A002 Ovary 1 (OV1) Sorg... 107 2e-021
gb|BE364574.2|BE364574 PI1_15_H09.g1_A002 Pathogen induced ... 107 2e-021
gb|BE362992.2|BE362992 DG1_92_F01.g1_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BF481310.1|BF481310 FM1_18_D04.g1_A003 Floral-Induced Me... 100 4e-019
gb|BG487962.1|BG487962 RHIZ2_61_D12.g1_A003 Rhizome2 (RHIZ2... 100 4e-019
gb|BG558058.1|BG558058 RHIZ2_66_B02.g1_A003 Rhizome2 (RHIZ2... 100 4e-019
gb|DN551872.1|DN551872 pSPR-RT-MR-H1_G04_C276 pSPR Sorghum ... 100 4e-019
gb|CL173774.1|CL173774 104_377_10891106_116_31793_242 Sorgh... 96 7e-018
gb|CL173775.1|CL173775 104_377_10891106_148_31792_242 Sorgh... 96 7e-018
gb|CW315423.1|CW315423 104_806_11472351_148_35827_056 Sorgh... 96 7e-018
gb|CW482625.1|CW482625 fsbb001f242n03k0 Sorghum methylation... 96 7e-018
gb|BE362449.1|BE362449 DG1_86_G01.g1_A002 Dark Grown 1 (DG1... 96 7e-018
gb|BG557612.1|BG557612 EM1_54_A03.g1_A002 Embryo 1 (EM1) So... 96 7e-018
gb|BG356009.2|BG356009 EM1_19_C06.g1_A002 Embryo 1 (EM1) So... 96 7e-018
gb|CD226034.1|CD226034 CCC1_43_C09.b1_A007 Callus culture/c... 96 7e-018
gb|CD463381.1|CD463381 ETH1_44_H01.b1_A002 Ethylene-treated... 96 7e-018
gb|BG241551.1|BG241551 RHIZ2_17_A01.g1_A003 Rhizome2 (RHIZ2... 92 1e-016
gb|BF587927.1|BF587927 FM1_34_F02.g1_A003 Floral-Induced Me... 88 2e-015
gb|BG101760.1|BG101760 RHIZ2_21_A04.g1_A003 Rhizome2 (RHIZ2... 88 2e-015
gb|AW922566.1|AW922566 DG1_45_G07.g1_A002 Dark Grown 1 (DG1... 84 3e-014
gb|CW380095.1|CW380095 fsbb001f059l10k0 Sorghum methylation... 82 1e-013
gb|CW410953.1|CW410953 fsbb001f105o16f0 Sorghum methylation... 82 1e-013
gb|CW234029.1|CW234029 104_687_11213762_116_37380_005 Sorgh... 80 4e-013
gb|BG947578.1|BG947578 IP1_6_D02.g1_A002 Immature pannicle ... 80 4e-013
gb|CW150734.1|CW150734 104_551_11143570_148_36313_043 Sorgh... 76 6e-012
gb|CW460987.1|CW460987 fsbb001f208h04k0 Sorghum methylation... 76 6e-012
gb|BE367374.1|BE367374 PI1_4_E12.g1_A002 Pathogen induced 1... 74 2e-011
gb|BE359155.1|BE359155 DG1_39_C05.b1_A002 Dark Grown 1 (DG1... 72 1e-010
gb|CW221367.1|CW221367 104_656_11197867_116_37452_074 Sorgh... 68 1e-009
gb|CW221368.1|CW221368 104_656_11197867_148_37453_074 Sorgh... 68 1e-009
gb|CW246218.1|CW246218 104_707_11221250_116_35083_013 Sorgh... 64 2e-008
gb|CW442302.1|CW442302 fsbb001f161o10k0 Sorghum methylation... 64 2e-008
gb|AW563466.1|AW563466 LG1_228_A10.g1_A002 Light Grown 1 (L... 64 2e-008
gb|CD209387.1|CD209387 HS1_42_G07.b1_A012 Heat-shocked seed... 60 4e-007
gb|CW463400.1|CW463400 fsbb001f211p20f0 Sorghum methylation... 58 1e-006
gb|BG355763.2|BG355763 EM1_19_C06.b1_A002 Embryo 1 (EM1) So... 58 1e-006
gb|BE358315.1|BE358315 DG1_29_B04.b1_A002 Dark Grown 1 (DG1... 52 9e-005
gb|BM323365.1|BM323365 PIC1_18_D12.b1_A002 Pathogen-infecte... 52 9e-005
gb|CW091307.1|CW091307 104_453_10998472_116_33035_062 Sorgh... 46 0.005
gb|CW389640.1|CW389640 fsbb001f074o21k0 Sorghum methylation... 46 0.005
gb|CW457821.1|CW457821 fsbb001f203m21f0 Sorghum methylation... 46 0.005
gb|CW474770.1|CW474770 fsbb001f230n01k0 Sorghum methylation... 46 0.005
gb|CW232087.1|CW232087 104_681_11211473_148_37349_069 Sorgh... 44 0.022
gb|CW234405.1|CW234405 104_688_11213971_148_37386_078 Sorgh... 44 0.022
gb|CW300537.1|CW300537 104_784_11463715_116_36253_080 Sorgh... 44 0.022
gb|CW314702.1|CW314702 104_805_11471968_148_35820_056 Sorgh... 44 0.022
gb|CW398382.1|CW398382 fsbb001f087m15k0 Sorghum methylation... 44 0.022
gb|CL167493.1|CL167493 104_364_10810120_114_31802_184 Sorgh... 42 0.086
gb|CW021742.1|CW021742 104_160_10431437_5_30005 Sorghum met... 42 0.086
gb|CW087484.1|CW087484 104_432_10947659_116_32554_046 Sorgh... 42 0.086
gb|CW088688.1|CW088688 104_433_10948284_116_32576_036 Sorgh... 42 0.086
gb|CW167238.1|CW167238 104_576_11153492_148_36679_074 Sorgh... 42 0.086
gb|CW257415.1|CW257415 104_722_11227323_116_35152_002 Sorgh... 42 0.086
gb|CW309256.1|CW309256 104_798_11469100_148_35742_016 Sorgh... 42 0.086
gb|AW679038.1|AW679038 WS1_22_H02.b1_A002 Water-stressed 1 ... 42 0.086
gb|BG559556.1|BG559556 RHIZ2_68_G11.g1_A003 Rhizome2 (RHIZ2... 42 0.086
gb|BZ338109.1|BZ338109 ia93a12.b1 WGS-SbicolorF (JM107 adap... 40 0.34
gb|CL161286.1|CL161286 104_352_10805610_114_31826_282 Sorgh... 40 0.34
gb|CL169804.1|CL169804 104_368_10812910_148_31808_382 Sorgh... 40 0.34
gb|CW084456.1|CW084456 104_427_10945808_114_32508_028 Sorgh... 40 0.34
gb|CW084457.1|CW084457 104_427_10945808_116_32512_028 Sorgh... 40 0.34
gb|CW093079.1|CW093079 104_456_10999562_148_37471_015 Sorgh... 40 0.34
gb|CW148692.1|CW148692 104_547_11142087_116_35014_058 Sorgh... 40 0.34
gb|CW148693.1|CW148693 104_547_11142087_148_35010_058 Sorgh... 40 0.34
gb|CW163385.1|CW163385 104_571_11151433_116_36457_015 Sorgh... 40 0.34
gb|CW179583.1|CW179583 104_593_11160175_148_36629_020 Sorgh... 40 0.34
gb|CW238925.1|CW238925 104_697_11217378_148_37421_079 Sorgh... 40 0.34
gb|CW262043.1|CW262043 104_729_11229838_116_35210_089 Sorgh... 40 0.34
gb|CW262044.1|CW262044 104_729_11229838_148_35206_089 Sorgh... 40 0.34
gb|CW326655.1|CW326655 104_822_11478333_116_35967_095 Sorgh... 40 0.34
gb|CW346361.1|CW346361 104_849_11488983_148_36218_052 Sorgh... 40 0.34
gb|CW389123.1|CW389123 fsbb001f074c23f0 Sorghum methylation... 40 0.34
gb|CW419535.1|CW419535 fsbb001f124h02f0 Sorghum methylation... 40 0.34
gb|CW455356.1|CW455356 fsbb001f200d06f0 Sorghum methylation... 40 0.34
gb|BE357686.1|BE357686 DG1_21_F07.g1_A002 Dark Grown 1 (DG1... 40 0.34
gb|BE359254.1|BE359254 DG1_39_E05.g1_A002 Dark Grown 1 (DG1... 40 0.34
gb|BG241826.1|BG241826 RHIZ2_51_C01.b1_A003 Rhizome2 (RHIZ2... 40 0.34
gb|BG241837.1|BG241837 RHIZ2_51_D01.b1_A003 Rhizome2 (RHIZ2... 40 0.34
gb|BG465665.1|BG465665 RHIZ2_47_C01.b1_A003 Rhizome2 (RHIZ2... 40 0.34
gb|BG948398.1|BG948398 IP1_9_C02.b1_A002 Immature pannicle ... 40 0.34
gb|BI211913.1|BI211913 IP1_62_A06.b1_A002 Immature pannicle... 40 0.34
>gb|CN129330.1|CN129330 RHOH1_34_G08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G08_A002 5', mRNA sequence
Length = 772
Score = 815 bits (411), Expect = 0.0
Identities = 505/535 (94%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 2 aagaacacggtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctc 61
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 175 aagaacacggtgacgcaggtggcgaagaaggtgctgaccatgaacccgtcgggcgacctc 234
Query: 62 tccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttc 121
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 235 tccagcgcgcgattcagcgagaaggagctcatcaccgccatcgaccgcgagggcgtgttc 294
Query: 122 acgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgt 181
||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||
Sbjct: 295 acgtacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgt 353
Query: 182 gctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccag 241
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 354 gctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaa 413
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccg 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 414 gatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccg 473
Query: 302 cgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgtt 361
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 474 cgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgtt 533
Query: 362 cccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagct 421
|||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||
Sbjct: 534 cccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagct 593
Query: 422 caagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgt 481
||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 594 caagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgt 653
Query: 482 cgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 708
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 577 tccgcgcatggccggaggaggagaagaggaagaggagga 615
|||| |||||||||||||||||| ||| ||||| |||||
Sbjct: 734 tccgtgcatggccggaggaggaggagaagaagaagagga 772
>gb|CW220801.1|CW220801 104_655_11197555_116_37153_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197555, DNA
sequence
Length = 642
Score = 737 bits (372), Expect = 0.0
Identities = 463/492 (94%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 2 aagaacacggtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctc 61
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 494 aagaacacggtgacgcaggtggcgaagaaggtgctgaccatgaacccgtcgggcgacctc 435
Query: 62 tccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttc 121
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 434 tccagcgcgcgattcagcgagaaggagctcatcaccgccatcgaccgcgagggcgtgttc 375
Query: 122 acgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgt 181
||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||
Sbjct: 374 acgtacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgt 316
Query: 182 gctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccag 241
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 315 gctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaa 256
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccg 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 255 gatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccg 196
Query: 302 cgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgtt 361
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 195 cgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgtt 136
Query: 362 cccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagct 421
|||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||
Sbjct: 135 cccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagct 76
Query: 422 caagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgt 481
||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 75 caagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgt 16
Query: 482 cgaccccatgct 493
|||||| |||||
Sbjct: 15 cgaccctatgct 4
>gb|CN126243.1|CN126243 RHOH1_16_B03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_B03_A002 3', mRNA sequence
Length = 753
Score = 726 bits (366), Expect = 0.0
Identities = 448/474 (94%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 63 ccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttca 122
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 1 ccagcgcgcgattcagcgagaaggagctcatcaccgccatcgaccgcgagggcgtgttca 60
Query: 123 cgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtg 182
|||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct: 61 cgtacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgtg 119
Query: 183 ctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccagg 242
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 120 ctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaag 179
Query: 243 atcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgc 302
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 180 atcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgc 239
Query: 303 gtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttc 362
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 240 gtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttc 299
Query: 363 ccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctc 422
||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 300 ccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctc 359
Query: 423 aagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtc 482
|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct: 360 aagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtc 419
Query: 483 gaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 473
Score = 196 bits (99), Expect = 2e-048
Identities = 215/247 (87%), Gaps = 15/247 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 515 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 574
Query: 649 tgtctccagattgtgccgc-cgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 575 tgtc--cagatcgtgcgggtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 632
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct: 633 atccgtatgtgtgtggg------gcgttgttctttcttctttgtgtagctgccctgtcac 686
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 687 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 746
Query: 823 tttgggg 829
|| ||||
Sbjct: 747 ttggggg 753
>gb|CN138952.1|CN138952 OX1_15_D09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_D09_A002 3', mRNA sequence
Length = 750
Score = 714 bits (360), Expect = 0.0
Identities = 442/468 (94%), Gaps = 1/468 (0%)
Strand = Plus / Plus
Query: 69 cgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttcacgtacg 128
|||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 1 cgcgattcagcgagaaggagctcatcaccgccatcgaccgcgagggcgtgttcacgtacg 60
Query: 129 cggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtg 188
|||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct: 61 cggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgtgctggtg 119
Query: 189 gaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccaggatcacc 248
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 120 gaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaagatcacc 179
Query: 249 aagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgcc 308
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 180 aagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgcc 239
Query: 309 gtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctg 368
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 240 gtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctg 299
Query: 369 taccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcc 428
||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 300 taccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcc 359
Query: 429 cccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgacccc 488
|||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct: 360 cccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccct 419
Query: 489 atgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 467
Score = 196 bits (99), Expect = 2e-048
Identities = 219/251 (87%), Gaps = 16/251 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 509 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 568
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| ||
Sbjct: 569 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatca 626
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 627 atccgtatgtgtgt------gtggcgttgttctttcttctttgtgtagctgccctgtcac 680
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 681 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgta- 739
Query: 823 tttggggtgaa 833
|||||||||||
Sbjct: 740 tttggggtgaa 750
>gb|CW220802.1|CW220802 104_655_11197555_148_37154_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197555, DNA
sequence
Length = 710
Score = 698 bits (352), Expect = 0.0
Identities = 437/464 (94%), Gaps = 1/464 (0%)
Strand = Plus / Plus
Query: 2 aagaacacggtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctc 61
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 246 aagaacacggtgacgcaggtggcgaagaaggtgctgaccatgaacccgtcgggcgacctc 305
Query: 62 tccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttc 121
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 306 tccagcgcgcgattcagcgagaaggagctcatcaccgccatcgaccgcgagggcgtgttc 365
Query: 122 acgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgt 181
||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||
Sbjct: 366 acgtacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgt 424
Query: 182 gctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccag 241
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 425 gctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaa 484
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccg 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 485 gatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccg 544
Query: 302 cgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgtt 361
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 545 cgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgtt 604
Query: 362 cccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagct 421
|||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||
Sbjct: 605 cccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagct 664
Query: 422 caagtcccccggcgaggagtgcaacaaggtgttcctcggcatca 465
||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 665 caagtcccccggcgaggagtgcaccaaggtgttcaacggcatca 708
>gb|BE358732.1|BE358732 DG1_31_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 676 bits (341), Expect = 0.0
Identities = 417/441 (94%), Gaps = 1/441 (0%)
Strand = Plus / Plus
Query: 96 ccgccatcgaccgcgaggccgtgttcacgtacgcggaggacgcggccagcgccagcctgc 155
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 ccgccatcgaccgcgagggcgtgttcacgtacgcggaggacccggccagcgccagcctgc 61
Query: 156 cggctgatgcagaaactgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcg 215
|| |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 62 cg-ctgatgacgaagctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcg 120
Query: 216 gagcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtg 275
||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 gagcgggagccctccgtgttctccaagatcaccaagttcgaggaggagctccgcgcggtg 180
Query: 276 ctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcc 335
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcg 240
Query: 336 aaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggc 395
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct: 241 aaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggc 300
Query: 396 tgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttc 455
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 tgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttc 360
Query: 456 ctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggac 515
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 361 aacggcatcaaccagggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggac 420
Query: 516 ggcaagccgctgcccatcaac 536
|||||||||||||||||||||
Sbjct: 421 ggcaagccgctgcccatcaac 441
Score = 105 bits (53), Expect = 7e-021
Identities = 119/135 (88%), Gaps = 7/135 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 483 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 542
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 543 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 600
Query: 705 atccatatgtgtgtg 719
|||| ||||||||||
Sbjct: 601 atccgtatgtgtgtg 615
>gb|BE355038.1|BE355038 DG1_10_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 626
Score = 668 bits (337), Expect = 0.0
Identities = 413/437 (94%), Gaps = 1/437 (0%)
Strand = Plus / Plus
Query: 100 catcgaccgcgaggccgtgttcacgtacgcggaggacgcggccagcgccagcctgccggc 159
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1 catcgaccgcgagggcgtgttcacgtacgcggaggacccggccagcgccagcctgccg-c 59
Query: 160 tgatgcagaaactgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcggagc 219
||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 60 tgatgacgaagctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcggagc 119
Query: 220 gcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgc 279
| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gggagccctccgtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgctgc 179
Query: 280 cccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaacc 339
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 180 cacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaacc 239
Query: 340 ggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcg 399
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 240 ggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcg 299
Query: 400 tgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcg 459
||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 300 tgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacg 359
Query: 460 gcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggca 519
|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 360 gcatcaaccagggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacggca 419
Query: 520 agccgctgcccatcaac 536
|||||||||||||||||
Sbjct: 420 agccgctgcccatcaac 436
Score = 105 bits (53), Expect = 7e-021
Identities = 119/135 (88%), Gaps = 7/135 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 478 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 537
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 538 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 595
Query: 705 atccatatgtgtgtg 719
|||| ||||||||||
Sbjct: 596 atccgtatgtgtgtg 610
>gb|CN129246.1|CN129246 RHOH1_34_G08.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G08_A002 3', mRNA sequence
Length = 728
Score = 666 bits (336), Expect = 0.0
Identities = 415/440 (94%), Gaps = 1/440 (0%)
Strand = Plus / Plus
Query: 97 cgccatcgaccgcgaggccgtgttcacgtacgcggaggacgcggccagcgccagcctgcc 156
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 cgccatcgaccgcgagggcgtgttcacgtacgcggaggacccggccagcgccagcctgcc 60
Query: 157 ggctgatgcagaaactgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcgg 216
| |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 g-ctgatgacgaagctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcgg 119
Query: 217 agcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgc 276
|||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 120 agcgggacccctccgtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgc 179
Query: 277 tgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcca 336
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 180 tgccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcga 239
Query: 337 accggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggct 396
||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 240 accggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggct 299
Query: 397 gcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcc 456
|||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 300 gcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttca 359
Query: 457 tcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacg 516
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 360 acggcatcaaccagggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacg 419
Query: 517 gcaagccgctgcccatcaac 536
||||||||||||||||||||
Sbjct: 420 gcaagccgctgcccatcaac 439
Score = 178 bits (90), Expect = 6e-043
Identities = 230/268 (85%), Gaps = 19/268 (7%)
Strand = Plus / Plus
Query: 577 tccgcgcatggccggagg---aggagaagaggaagaggaggaaaatacatgaaaaataaa 633
|||| ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 465 tccgtgcatggccggaggcggaggagaagaagaagaggaggaaaatccatgaaaaataaa 524
Query: 634 acttgtacac-gtgtatgtctccagattgtgc-cgccgtcgttc--tcgtcgttgacttt 689
|||||||||| ||||||||| ||||| |||| || ||||||| |||| |||||||||
Sbjct: 525 acttgtacaccgtgtatgtc--cagatcgtgcgcgtcgtcgtttcttcgttgttgacttt 582
Query: 690 tcgttgt-attggtcgatccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgt 748
| ||||| |||| |||| || || ||||||| | |||||||||||||||||||||
Sbjct: 583 tggttgtgattgatcgacccgtacgtgtgtggg------gcgttgttctttcttctttgt 636
Query: 749 gtagctgccctgccaccgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatc 808
|||||||||||| |||||||||| ||| |||||||||||||| |||||| |||||||||
Sbjct: 637 gtagctgccctgtcaccgcctgcgatgtgcatgccatggcagacagcgttttctaagatc 696
Query: 809 c--tatactgttgtattttggggtgaac 834
| |||||||||||| ||||||||||||
Sbjct: 697 ctatatactgttgta-tttggggtgaac 723
>gb|BG932930.1|BG932930 DG1_69_B03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 689
Score = 654 bits (330), Expect = 0.0
Identities = 406/430 (94%), Gaps = 1/430 (0%)
Strand = Plus / Plus
Query: 107 cgcgaggccgtgttcacgtacgcggaggacgcggccagcgccagcctgccggctgatgca 166
||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 1 cgcgagggcgtgttcacgtacgcggaggacccggccagcgccagcctgccg-ctgatgac 59
Query: 167 gaaactgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcggagcgcgagcc 226
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 60 gaagctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcggagcgggagcc 119
Query: 227 ctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccagga 286
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 120 ctccgtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacggga 179
Query: 287 ggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgc 346
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 180 ggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgc 239
Query: 347 ggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcct 406
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 240 ggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcct 299
Query: 407 caccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcag 466
|| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 300 gacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaa 359
Query: 467 ccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgct 526
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 360 ccagggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgct 419
Query: 527 gcccatcaac 536
||||||||||
Sbjct: 420 gcccatcaac 429
Score = 194 bits (98), Expect = 1e-047
Identities = 199/227 (87%), Gaps = 13/227 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 471 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 530
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 531 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 588
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 589 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 642
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatccta 811
||||||| ||| |||||||||||||| |||||| ||||||||||||
Sbjct: 643 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatccta 689
>gb|BE355461.1|BE355461 DG1_114_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 652
Score = 646 bits (326), Expect = 0.0
Identities = 399/422 (94%), Gaps = 1/422 (0%)
Strand = Plus / Plus
Query: 115 cgtgttcacgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgc 174
|||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||
Sbjct: 1 cgtgttcacgtacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgc 59
Query: 175 gcgccgtgctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtct 234
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 60 gcgccgtgctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgt 119
Query: 235 tctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggagg 294
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 120 tctccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggagg 179
Query: 295 ccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagcc 354
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 180 ccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagcc 239
Query: 355 gctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcg 414
| ||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||
Sbjct: 240 ggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcg 299
Query: 415 agaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggca 474
|||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct: 300 agaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggca 359
Query: 475 agctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatca 534
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatca 419
Query: 535 ac 536
||
Sbjct: 420 ac 421
Score = 145 bits (73), Expect = 8e-033
Identities = 172/198 (86%), Gaps = 14/198 (7%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 463 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 522
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 523 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 580
Query: 705 at-ccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgcca 763
|| || |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 581 ataccgtatgtgtg------tgtggcgttgttctttcttctttgtgtagctgccctgtca 634
Query: 764 ccgcctgcaatgcgcatg 781
|||||||| ||| |||||
Sbjct: 635 ccgcctgcgatgtgcatg 652
>gb|CN125016.1|CN125016 RHOH1_8_H01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_H01_A002 3', mRNA sequence
Length = 735
Score = 624 bits (315), Expect = e-177
Identities = 388/411 (94%), Gaps = 1/411 (0%)
Strand = Plus / Plus
Query: 125 tacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgct 184
|||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct: 1 tacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgtgct 59
Query: 185 ggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccaggat 244
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct: 60 ggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaagat 119
Query: 245 caccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgt 304
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 120 caccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgt 179
Query: 305 cgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttccc 364
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 180 cgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttccc 239
Query: 365 gctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaa 424
||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||
Sbjct: 240 gctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaa 299
Query: 425 gtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcga 484
|||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct: 300 gtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcga 359
Query: 485 ccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaa 535
||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaa 410
Score = 222 bits (112), Expect = 4e-056
Identities = 222/252 (88%), Gaps = 15/252 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 453 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 512
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 513 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 570
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 571 atccgtatgtgtgt------gtggcgttgttctttcttctttgtgtagctgccctgtcac 624
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 625 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 684
Query: 823 tttggggtgaac 834
||||||||||||
Sbjct: 685 tttggggtgaac 696
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 849 tcaatttcttcttctaagtatcct 872
|||||| |||||||||||||||||
Sbjct: 700 tcaattccttcttctaagtatcct 723
>gb|CF072290.1|CF072290 FE1_7_F11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_7_F11_A002 3', mRNA sequence
Length = 740
Score = 617 bits (311), Expect = e-175
Identities = 384/407 (94%), Gaps = 1/407 (0%)
Strand = Plus / Plus
Query: 130 ggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgg 189
||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct: 1 ggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgtgctggtgg 59
Query: 190 accacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccaggatcacca 249
||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 60 accacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaagatcacca 119
Query: 250 agttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccg 309
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 120 agttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccg 179
Query: 310 tcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgt 369
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 180 tcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgt 239
Query: 370 accgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtccc 429
|||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 240 accgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtccc 299
Query: 430 ccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgacccca 489
||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |
Sbjct: 300 ccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgacccta 359
Query: 490 tgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 406
Score = 222 bits (112), Expect = 4e-056
Identities = 222/252 (88%), Gaps = 15/252 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 448 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 507
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 508 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 565
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 566 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 619
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 620 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 679
Query: 823 tttggggtgaac 834
||||||||||||
Sbjct: 680 tttggggtgaac 691
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 849 tcaatttcttcttctaagtatcct 872
|||||| |||||||||||||||||
Sbjct: 695 tcaattccttcttctaagtatcct 718
>gb|CW436719.1|CW436719 fsbb001f153h11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f153h11, DNA
sequence
Length = 658
Score = 607 bits (306), Expect = e-172
Identities = 382/406 (94%), Gaps = 1/406 (0%)
Strand = Plus / Minus
Query: 131 gaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtgga 190
|||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct: 658 gaggacccggccagcgccagcctgccg-ctgatgacgaagttgcgcgccgtgctggtgga 600
Query: 191 ccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaa 250
|||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 599 ccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaagatcaccaa 540
Query: 251 gttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgt 310
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 539 gttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccgt 480
Query: 311 cgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgta 370
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 479 cgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgta 420
Query: 371 ccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccc 430
||||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 419 ccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccc 360
Query: 431 cggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccat 490
|||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct: 359 cggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccctat 300
Query: 491 gctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 254
Score = 180 bits (91), Expect = 1e-043
Identities = 192/220 (87%), Gaps = 13/220 (5%)
Strand = Plus / Minus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 212 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 153
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 152 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 95
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 94 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 41
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaa 804
||||||| ||| |||||||||||||| |||||| |||||
Sbjct: 40 cgcctgcgatgtgcatgccatggcagacagcgttttctaa 1
>gb|BE361202.1|BE361202 DG1_70_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 398
Score = 601 bits (303), Expect = e-170
Identities = 373/395 (94%), Gaps = 1/395 (0%)
Strand = Plus / Plus
Query: 142 cagcgccagcctgccggctgatgcagaaactgcgcgccgtgctggtggaccacgccctca 201
|||||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||
Sbjct: 1 cagcgccagcctgccg-ctgatgacgaagctgcgcgccgtgctggtggaccacgcgctca 59
Query: 202 gcagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggagg 261
||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 60 gcagcggcgacgcggagcgggagccctccgtgttctccaagatcaccaagttcgaggagg 119
Query: 262 agctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggca 321
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccgtcgccgagggca 179
Query: 322 ccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgc 381
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 180 ccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtcc 239
Query: 382 gccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagt 441
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 240 gcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagt 299
Query: 442 gcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcc 501
||| |||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct: 300 gcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccctatgctagagtgcc 359
Query: 502 tcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||||||||||
Sbjct: 360 tcaaggagtgggacggcaagccgctgcccatcaac 394
>gb|BG103102.1|BG103102 RHIZ2_18_B11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 571
Score = 589 bits (297), Expect = e-166
Identities = 374/399 (93%), Gaps = 3/399 (0%)
Strand = Plus / Plus
Query: 158 gctgatgcagaaactgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcgga 217
||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5 gctgatgacgaagctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcgga 64
Query: 218 gcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgct 277
||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65 gcgggagccctcggtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgct 124
Query: 278 gccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaa 337
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 125 gccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaa 184
Query: 338 ccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctg 397
|||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 185 ccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctgggctg 244
Query: 398 cgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcct 457
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 245 cgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaa 304
Query: 458 cggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacgg 517
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cggcatcaaccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacgg 364
Query: 518 caagccgctgcccatcaa---catcaactaaaagacgcc 553
|||||||||||||||||| | ||||||||||||||||
Sbjct: 365 caagccgctgcccatcaacgtcgtcaactaaaagacgcc 403
Score = 97.6 bits (49), Expect = 2e-018
Identities = 118/135 (87%), Gaps = 7/135 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 430 ggaggaggaggagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 489
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 490 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtaattgatcg 547
Query: 705 atccatatgtgtgtg 719
|||| ||||||||||
Sbjct: 548 atccgtatgtgtgtg 562
>gb|CD221354.1|CD221354 CCC1_54_F07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_F07_A007 3', mRNA sequence
Length = 666
Score = 589 bits (297), Expect = e-166
Identities = 374/399 (93%), Gaps = 3/399 (0%)
Strand = Plus / Plus
Query: 158 gctgatgcagaaactgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcgga 217
||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 gctgatgacgaagctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcgga 60
Query: 218 gcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgct 277
||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgggagccctcggtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgct 120
Query: 278 gccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaa 337
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 gccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaa 180
Query: 338 ccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctg 397
|||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 181 ccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctgggctg 240
Query: 398 cgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcct 457
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 cgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaa 300
Query: 458 cggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacgg 517
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cggcatcaaccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacgg 360
Query: 518 caagccgctgcccatcaa---catcaactaaaagacgcc 553
|||||||||||||||||| | ||||||||||||||||
Sbjct: 361 caagccgctgcccatcaacgtcgtcaactaaaagacgcc 399
Score = 210 bits (106), Expect = 2e-052
Identities = 206/233 (88%), Gaps = 11/233 (4%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 488
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgta-ttggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| |||||| ||| |||
Sbjct: 489 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtaattgatcg 546
Query: 705 atccatatgtgtgtgcg----tgtgtggcgttgttctttcttctttgtgtagctgccctg 760
|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atccgtatgtgtgtgtgcgtgtgtgtggcgttgttctttcttctttgtgtagctgccctg 606
Query: 761 ccaccgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcctata 813
|||||||||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 607 tcaccgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctata 659
>gb|BG239851.1|BG239851 OV1_29_G11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 585 bits (295), Expect = e-165
Identities = 358/379 (94%)
Strand = Plus / Plus
Query: 158 gctgatgcagaaactgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcgga 217
||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5 gctgatgacgaagctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcgga 64
Query: 218 gcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgct 277
||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65 gcgggagccctccgtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgct 124
Query: 278 gccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaa 337
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 125 gccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaa 184
Query: 338 ccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctg 397
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 185 ccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctg 244
Query: 398 cgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcct 457
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 245 cgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaa 304
Query: 458 cggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacgg 517
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 305 cggcatcaaccagggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacgg 364
Query: 518 caagccgctgcccatcaac 536
|||||||||||||||||||
Sbjct: 365 caagccgctgcccatcaac 383
Score = 198 bits (100), Expect = 6e-049
Identities = 201/229 (87%), Gaps = 13/229 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 425 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 484
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 485 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 542
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 543 atccgtatgtgtgt------gtggcgttgttctttcttctttgtgtagctgccctgtcac 596
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcctata 813
||||||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 597 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctata 645
>gb|BE355327.1|BE355327 DG1_114_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 583 bits (294), Expect = e-164
Identities = 348/366 (95%)
Strand = Plus / Plus
Query: 171 ctgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctcc 230
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 6 ctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctcc 65
Query: 231 gtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtg 290
|| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 66 gtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtg 125
Query: 291 gaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggac 350
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 126 gaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggac 185
Query: 351 agccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcacc 410
||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 186 agccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacg 245
Query: 411 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccag 470
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 246 ggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccag 305
Query: 471 ggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgccc 530
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgccc 365
Query: 531 atcaac 536
||||||
Sbjct: 366 atcaac 371
Score = 129 bits (65), Expect = 5e-028
Identities = 150/173 (86%), Gaps = 13/173 (7%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 413 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 472
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 473 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 530
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgcc 757
|||| ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 531 atccgtatgt------gtgtgtggcgttgttctttcttctttgtgtanctgcc 577
>gb|BE355405.1|BE355405 DG1_114_H09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 557
Score = 583 bits (294), Expect = e-164
Identities = 348/366 (95%)
Strand = Plus / Plus
Query: 171 ctgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctcc 230
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 6 ctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctcc 65
Query: 231 gtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtg 290
|| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 66 gtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtg 125
Query: 291 gaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggac 350
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 126 gaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggac 185
Query: 351 agccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcacc 410
||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 186 agccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacg 245
Query: 411 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccag 470
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 246 ggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccag 305
Query: 471 ggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgccc 530
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgccc 365
Query: 531 atcaac 536
||||||
Sbjct: 366 atcaac 371
Score = 99.6 bits (50), Expect = 4e-019
Identities = 118/135 (87%), Gaps = 7/135 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 413 ggaggaggagaagaanaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 472
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 473 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 530
Query: 705 atccatatgtgtgtg 719
|||| ||||||||||
Sbjct: 531 atccgtatgtgtgtg 545
>gb|BG412632.1|BG412632 OV2_36_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 571 bits (288), Expect = e-161
Identities = 368/392 (93%), Gaps = 2/392 (0%)
Strand = Plus / Plus
Query: 146 gccagcctgccggctgatgcagaaactgcgcgccgtgctggtggaccacgccctcagcag 205
|||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct: 1 gccagcctgccg-ctgatgacgaagctgcgcgccgtgctggtggaccacgcgctcagcag 59
Query: 206 cggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagct 265
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 60 cggcgacgcggagcgggagccctccgtgttctccaagatcaccaagttcgaggaggagct 119
Query: 266 ccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgc 325
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgc 179
Query: 326 ccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgcca 385
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 180 ccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcga 239
Query: 386 ggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaa 445
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 240 ggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcac 299
Query: 446 caaggtgttcctcggcatcagccagggcaa-gctcgtcgaccccatgctcgagtgcctca 504
|||||||||| |||||||| ||||||||| | |||||||||| ||||| ||||||||||
Sbjct: 300 caaggtgttcaacggcatcaaccagggcaaggttcgtcgaccctatgctagagtgcctca 359
Query: 505 aggagtgggacggcaagccgctgcccatcaac 536
||||||||||||||||||||||||||||||||
Sbjct: 360 aggagtgggacggcaagccgctgcccatcaac 391
Score = 176 bits (89), Expect = 2e-042
Identities = 181/206 (87%), Gaps = 13/206 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 433 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 492
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 493 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 550
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 551 atccgtatgtgtgt------gtggcgttgttctttcttctttgtgtagctgccctgtcac 604
Query: 765 cgcctgcaatgcgcatgccatggcag 790
||||||| ||| ||||||||||||||
Sbjct: 605 cgcctgcgatgtgcatgccatggcag 630
>gb|BE355472.1|BE355472 DG1_114_H09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 569 bits (287), Expect = e-160
Identities = 348/367 (94%), Gaps = 1/367 (0%)
Strand = Plus / Plus
Query: 171 ctgcgcgccgtgctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctcc 230
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 6 ctgcgcgccgtgctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctcc 65
Query: 231 gtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtg 290
|| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 66 gtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtg 125
Query: 291 gaggccgcccgcgtcgccgtcgccgagggcaccgccccc-gtggccaaccggatcgcgga 349
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 126 gaggccgcccgcgtcgccgtcgccgagggcaccgccccccgtggcgaaccggatcgcgga 185
Query: 350 cagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcac 409
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 186 cagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgac 245
Query: 410 cggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagcca 469
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct: 246 gggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaacca 305
Query: 470 gggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcc 529
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 306 gggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcc 365
Query: 530 catcaac 536
|||||||
Sbjct: 366 catcaac 372
Score = 190 bits (96), Expect = 2e-046
Identities = 220/252 (87%), Gaps = 17/252 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 414 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 473
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 474 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 531
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 532 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 585
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| ||| || |||||||||| ||||||||||||
Sbjct: 586 cgcctgcgatgtgcatgccatggcagacagc-ttttctaagatcctatatactgttgta- 643
Query: 823 tttggggtgaac 834
||||||||||||
Sbjct: 644 tttggggtgaac 655
>gb|CD224791.1|CD224791 CCC1_36_B03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_B03_A007 3', mRNA sequence
Length = 663
Score = 567 bits (286), Expect = e-160
Identities = 354/376 (94%), Gaps = 3/376 (0%)
Strand = Plus / Plus
Query: 181 tgctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctcca 240
|||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 1 tgctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctcggtgttctcca 60
Query: 241 ggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgccc 300
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 61 agatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgccc 120
Query: 301 gcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgt 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 121 gcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgt 180
Query: 361 tcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagc 420
||||||||||||||||||| ||| ||||||| |||||||||||||| || ||||||||||
Sbjct: 181 tcccgctgtaccgcttcgtccgcgaggagctgggctgcgtgttcctgacgggcgagaagc 240
Query: 421 tcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcg 480
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct: 241 tcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcg 300
Query: 481 tcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaa---ca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 tcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaacgtcg 360
Query: 538 tcaactaaaagacgcc 553
||||||||||||||||
Sbjct: 361 tcaactaaaagacgcc 376
Score = 224 bits (113), Expect = 1e-056
Identities = 222/251 (88%), Gaps = 13/251 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 406 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 465
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgta-ttggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| |||||| ||| |||
Sbjct: 466 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtaattgatcg 523
Query: 705 atccatatgtgtgtgcg----tgtgtggcgttgttctttcttctttgtgtagctgccctg 760
|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atccgtatgtgtgtgtgcgtgtgtgtggcgttgttctttcttctttgtgtagctgccctg 583
Query: 761 ccaccgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgtt 818
|||||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 584 tcaccgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgtt 643
Query: 819 gtattttgggg 829
|||||||||||
Sbjct: 644 gtattttgggg 654
>gb|BG356951.1|BG356951 OV2_12_A10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 468
Score = 565 bits (285), Expect = e-159
Identities = 339/357 (94%)
Strand = Plus / Plus
Query: 180 gtgctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctcc 239
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1 gtgctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctcc 60
Query: 240 aggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcc 299
| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 61 aagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcc 120
Query: 300 cgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcg 359
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 121 cgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcg 180
Query: 360 ttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaag 419
|||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||
Sbjct: 181 ttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaag 240
Query: 420 ctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctc 479
||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct: 241 ctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctc 300
Query: 480 gtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 357
Score = 103 bits (52), Expect = 3e-020
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 399 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 458
Query: 649 tgtc 652
||||
Sbjct: 459 tgtc 462
>gb|BE592930.1|BE592930 WS1_92_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 563 bits (284), Expect = e-158
Identities = 338/356 (94%)
Strand = Plus / Minus
Query: 181 tgctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctcca 240
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 577 tgctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctcca 518
Query: 241 ggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgccc 300
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 517 agatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgccc 458
Query: 301 gcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgt 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 457 gcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgt 398
Query: 361 tcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagc 420
||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||
Sbjct: 397 tcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagc 338
Query: 421 tcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcg 480
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct: 337 tcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcg 278
Query: 481 tcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 222
Score = 143 bits (72), Expect = 3e-032
Identities = 158/181 (87%), Gaps = 13/181 (7%)
Strand = Plus / Minus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 180 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 121
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 120 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 63
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 62 atccgtatgt------gtgtgtggcgttgttctttcttctttgtgtagctgccctgtcac 9
Query: 765 c 765
|
Sbjct: 8 c 8
>gb|CW297734.1|CW297734 104_780_11462198_148_35653_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462198, DNA
sequence
Length = 619
Score = 557 bits (281), Expect = e-157
Identities = 335/353 (94%)
Strand = Plus / Plus
Query: 184 tggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccagga 243
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 1 tggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaaga 60
Query: 244 tcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcg 303
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 61 tcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcg 120
Query: 304 tcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcc 363
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 121 tcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttcc 180
Query: 364 cgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctca 423
|||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||
Sbjct: 181 cgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctca 240
Query: 424 agtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcg 483
||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct: 241 agtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcg 300
Query: 484 accccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 353
Score = 198 bits (100), Expect = 6e-049
Identities = 201/229 (87%), Gaps = 13/229 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 454
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 455 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 512
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 566
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcctata 813
||||||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 567 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctata 615
>gb|CW322470.1|CW322470 104_816_11476115_116_35953_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476115, DNA
sequence
Length = 656
Score = 557 bits (281), Expect = e-157
Identities = 348/369 (94%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 2 aagaacacggtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctc 61
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 289 aagaacacggtgacgcaggtggcgaagaaggtgctgaccatgaacccgtcgggcgacctc 348
Query: 62 tccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttc 121
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 349 tccagcgcgcgattcagcgagaaggagctcatcaccgccatcgaccgcgagggcgtgttc 408
Query: 122 acgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgt 181
||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||
Sbjct: 409 acgtacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgt 467
Query: 182 gctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccag 241
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 468 gctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaa 527
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccg 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 528 gatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccg 587
Query: 302 cgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgtt 361
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 588 cgtcgccgtcgccgagggcaccgccaccgtggcgaaccggatcgcggacagccggtcgtt 647
Query: 362 cccgctgta 370
|||||||||
Sbjct: 648 cccgctgta 656
>gb|CD223110.1|CD223110 CCC1_26_F03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_26_F03_A007 3', mRNA sequence
Length = 662
Score = 549 bits (277), Expect = e-154
Identities = 345/367 (94%), Gaps = 3/367 (0%)
Strand = Plus / Plus
Query: 190 accacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccaggatcacca 249
||||||| ||||||||||||||||||||||| |||||||| || ||||||| ||||||||
Sbjct: 1 accacgcgctcagcagcggcgacgcggagcgggagccctcggtgttctccaagatcacca 60
Query: 250 agttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccg 309
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 61 agttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccg 120
Query: 310 tcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgt 369
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 121 tcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgt 180
Query: 370 accgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtccc 429
|||||||||| ||| ||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 181 accgcttcgtccgcgaggagctgggctgcgtgttcctgacgggcgagaagctcaagtccc 240
Query: 430 ccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgacccca 489
||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 241 ccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgacccca 300
Query: 490 tgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaa---catcaactaaa 546
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 301 tgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaacgtcgtcaactaaa 360
Query: 547 agacgcc 553
|||||||
Sbjct: 361 agacgcc 367
Score = 234 bits (118), Expect = 1e-059
Identities = 227/256 (88%), Gaps = 13/256 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 397 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 456
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgta-ttggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| |||||| ||| |||
Sbjct: 457 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtaattgatcg 514
Query: 705 atccatatgtgtgtgcg----tgtgtggcgttgttctttcttctttgtgtagctgccctg 760
|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atccgtatgtgtgtgtgcgtgtgtgtggcgttgttctttcttctttgtgtagctgccctg 574
Query: 761 ccaccgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgtt 818
|||||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 575 tcaccgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgtt 634
Query: 819 gtattttggggtgaac 834
||||||||||||||||
Sbjct: 635 gtattttggggtgaac 650
>gb|CW388607.1|CW388607 fsbb001f073h01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073h01, DNA
sequence
Length = 580
Score = 547 bits (276), Expect = e-154
Identities = 347/368 (94%), Gaps = 2/368 (0%)
Strand = Plus / Plus
Query: 2 aagaacacggtgacccaggtggccaagaaggtgctgaccatgaacccctcgggggacctc 61
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 214 aagaacacggtgacgcaggtggcgaagaaggtgctgaccatgaacccgtcgggcgacctc 273
Query: 62 tccagcgcgcgcttcagcgagaaggagctcatctccgccatcgaccgcgaggccgtgttc 121
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 274 tccagcgcgcgattcagcgagaaggagctcatcaccgccatcgaccgcgagggcgtgttc 333
Query: 122 acgtacgcggaggacgcggccagcgccagcctgccggctgatgcagaaactgcgcgccgt 181
||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||
Sbjct: 334 acgtacgcggaggacccggccagcgccagcctgccg-ctgatgacgaagctgcgcgccgt 392
Query: 182 gctggtggaccacgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccag 241
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 393 gctggtggaccacgcgctcagcagcggcgacgcggagcgggagccctccgtgttctccaa 452
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccg 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 453 gatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccg 512
Query: 302 cgtcgccgtcgccga-gggcaccgcccccgtggccaaccggatcgcggacagccgctcgt 360
||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 513 cgtcgccgtcgccgaggggcaccgcccccgtggcgaaccggatcgcggacagccggtcgt 572
Query: 361 tcccgctg 368
||||||||
Sbjct: 573 tcccgctg 580
>gb|CD224320.1|CD224320 CCC1_33_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_33_H03_A007 3', mRNA sequence
Length = 651
Score = 543 bits (274), Expect = e-153
Identities = 342/364 (93%), Gaps = 3/364 (0%)
Strand = Plus / Plus
Query: 193 acgccctcagcagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagt 252
|||| ||||||||||||||||||||||| |||||||| || ||||||| |||||||||||
Sbjct: 1 acgcgctcagcagcggcgacgcggagcgggagccctcggtgttctccaagatcaccaagt 60
Query: 253 tcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcg 312
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 61 tcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccgtcg 120
Query: 313 ccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtacc 372
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 121 ccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtacc 180
Query: 373 gcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccg 432
||||||| ||| ||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct: 181 gcttcgtccgcgaggagctgggctgcgtgttcctgacgggcgagaagctcaagtcccccg 240
Query: 433 gcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgc 492
|||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 241 gcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccccatgc 300
Query: 493 tcgagtgcctcaaggagtgggacggcaagccgctgcccatcaa---catcaactaaaaga 549
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 301 tcgagtgcctcaaggagtgggacggcaagccgctgcccatcaacgtcgtcaactaaaaga 360
Query: 550 cgcc 553
||||
Sbjct: 361 cgcc 364
Score = 216 bits (109), Expect = 3e-054
Identities = 221/251 (88%), Gaps = 13/251 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 394 ggaggaggagaagaagaagaggaggaaaatccatgaaaaataaaacttgtacaccgtgta 453
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgta-ttggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| |||||| ||| |||
Sbjct: 454 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtaattgatcg 511
Query: 705 atccatatgtgtgtgcg----tgtgtggcgttgttctttcttctttgtgtagctgccctg 760
|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atccgtatgtgtgtgtgcgtgtgtgtggcgttgttctttcttctttgtgtagctgccctg 571
Query: 761 ccaccgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgtt 818
|||||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 572 tcaccgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgtt 631
Query: 819 gtattttgggg 829
|||||||||||
Sbjct: 632 gtattttgggg 642
>gb|CX608397.1|CX608397 ANR1_38_H10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_H10_A002 3', mRNA sequence
Length = 616
Score = 519 bits (262), Expect = e-145
Identities = 316/334 (94%)
Strand = Plus / Plus
Query: 203 cagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggagga 262
|||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||
Sbjct: 1 cagcggcgacgcggagcgggagccctccgtgtcctccaagatcaccaagttcgaggagga 60
Query: 263 gctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcac 322
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcac 120
Query: 323 cgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcg 382
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 121 cgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccg 180
Query: 383 ccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtg 442
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 181 cgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtg 240
Query: 443 caacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcct 502
|| |||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct: 241 caccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccctatgctagagtgcct 300
Query: 503 caaggagtgggacggcaagccgctgcccatcaac 536
||||||||||||||||||||||||||||||||||
Sbjct: 301 caaggagtgggacggcaagccgctgcccatcaac 334
Score = 202 bits (102), Expect = 4e-050
Identities = 212/242 (87%), Gaps = 15/242 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 376 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 435
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 436 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 493
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 547
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 548 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 607
Query: 823 tt 824
||
Sbjct: 608 tt 609
>gb|CX622505.1|CX622505 GABR1_64_H04.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_H04_A002 3', mRNA sequence
Length = 608
Score = 515 bits (260), Expect = e-144
Identities = 317/336 (94%)
Strand = Plus / Plus
Query: 201 agcagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggag 260
|||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1 agcagcggcgacgcggagcgggagccctccgtgttctccaagatcaccaagttcgaggag 60
Query: 261 gagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggc 320
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccgtcgccgagggc 120
Query: 321 accgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtg 380
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 accgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtc 180
Query: 381 cgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggag 440
||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 181 cgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggag 240
Query: 441 tgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgc 500
|||| |||||||||| |||||||| |||||||||||| |||||||| ||||| |||| |
Sbjct: 241 tgcaccaaggtgttcaacggcatcaaccagggcaagcttgtcgaccctatgctagagtac 300
Query: 501 ctcaaggagtgggacggcaagccgctgcccatcaac 536
||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcaaggagtgggacggcaagccgctgcccatcaac 336
Score = 174 bits (88), Expect = 9e-042
Identities = 198/229 (86%), Gaps = 13/229 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 378 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtaccccgtgta 437
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 438 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 495
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| | |||||||||||||||||||| |||||||||||| |||
Sbjct: 496 atccgtatgtgtgtggg------gcgttgttctttcttctttgggtagctgccctgtcac 549
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcctata 813
||||||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 550 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctata 598
>gb|BE359598.1|BE359598 DG1_54_H12.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 328
Score = 507 bits (256), Expect = e-142
Identities = 310/328 (94%)
Strand = Plus / Plus
Query: 202 gcagcggcgacgcggagcgcgagccctccgtcttctccaggatcaccaagttcgaggagg 261
||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 1 gcagcggcgacgcggagcgggagccctccgtgttctccaagatcaccaagttcgaggagg 60
Query: 262 agctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggca 321
||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct: 61 agctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgccgtcgctgagggca 120
Query: 322 ccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgc 381
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 121 ccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtcc 180
Query: 382 gccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagt 441
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 181 gcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagt 240
Query: 442 gcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcc 501
||| |||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct: 241 gcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccctatgctagagtgcc 300
Query: 502 tcaaggagtgggacggcaagccgctgcc 529
||||||||||||||||||||||||||||
Sbjct: 301 tcaaggagtgggacggcaagccgctgcc 328
>gb|BE367050.1|BE367050 PI1_42_D08.g2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 445
Score = 504 bits (254), Expect = e-141
Identities = 305/322 (94%)
Strand = Plus / Plus
Query: 215 ggagcgcgagccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggt 274
|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcgggagccctccgtgttctccaagatcaccaagttcgaggaggagctccgcgcggt 60
Query: 275 gctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggc 334
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgccacgggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggc 120
Query: 335 caaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcgg 394
|||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct: 121 gaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcgg 180
Query: 395 ctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
|||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgtt 240
Query: 455 cctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtggga 514
| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 241 caacggcatcaaccagggcaagctcgtcgaccctatgctagagtgcctcaaggagtggga 300
Query: 515 cggcaagccgctgcccatcaac 536
||||||||||||||||||||||
Sbjct: 301 cggcaagccgctgcccatcaac 322
Score = 103 bits (52), Expect = 3e-020
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 364 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 423
Query: 649 tgtc 652
||||
Sbjct: 424 tgtc 427
>gb|CN131413.1|CN131413 RHOH1_48_A02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_48_A02_A002 3', mRNA sequence
Length = 760
Score = 504 bits (254), Expect = e-141
Identities = 299/314 (95%)
Strand = Plus / Plus
Query: 223 agccctccgtcttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgcccc 282
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 agccctccgtgttctccaagatcaccaagttcgaggaggagctccgcgcggtgctgcccc 228
Query: 283 aggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccgga 342
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 229 gggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccgga 288
Query: 343 tcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgt 402
||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 289 tcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgt 348
Query: 403 tcctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggca 462
|||| || |||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 349 tcctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggca 408
Query: 463 tcagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagc 522
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 409 tcaaccagggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagc 468
Query: 523 cgctgcccatcaac 536
||||||||||||||
Sbjct: 469 cgctgcccatcaac 482
Score = 155 bits (78), Expect = 8e-036
Identities = 206/242 (85%), Gaps = 15/242 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 524 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtaccccgtgta 583
Query: 649 tgtctccagattgtgccgcc-gtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | |||||| |||| |||||||||| ||||| |||| |||
Sbjct: 584 tgtc--cagatcgtgcgggttgtcgtttcttcgttgttgacttttggttgtgattgatcg 641
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| | |||||||||||||||||||| |||||||||||| | |
Sbjct: 642 atccgtatgtgtgtggg------gcgttgttctttcttctttgggtagctgccctgtccc 695
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
| ||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 696 cccctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 755
Query: 823 tt 824
||
Sbjct: 756 tt 757
>gb|BM318326.1|BM318326 PI1_77_C08.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 482 bits (243), Expect = e-134
Identities = 288/303 (95%)
Strand = Plus / Plus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 4 ttctccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggag 63
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 64 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagc 123
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||
Sbjct: 124 cggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggc 183
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 184 gagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggc 243
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatc 303
Query: 534 aac 536
|||
Sbjct: 304 aac 306
Score = 176 bits (89), Expect = 2e-042
Identities = 181/206 (87%), Gaps = 13/206 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 348 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 407
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 408 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 465
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 466 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 519
Query: 765 cgcctgcaatgcgcatgccatggcag 790
||||||| ||| ||||||||||||||
Sbjct: 520 cgcctgcgatgtgcatgccatggcag 545
>gb|AW745482.1|AW745482 WS1_35_G01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 521
Score = 476 bits (240), Expect = e-132
Identities = 285/300 (95%)
Strand = Plus / Minus
Query: 237 tccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggcc 296
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 521 tccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggcc 462
Query: 297 gcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgc 356
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 461 gcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccgg 402
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||
Sbjct: 401 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgag 342
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
|||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct: 341 aagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaag 282
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 222
Score = 143 bits (72), Expect = 3e-032
Identities = 158/181 (87%), Gaps = 13/181 (7%)
Strand = Plus / Minus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 180 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 121
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 120 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 63
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 62 atccgtatgt------gtgtgtggcgttgttctttcttctttgtgtagctgccctgtcac 9
Query: 765 c 765
|
Sbjct: 8 c 8
>gb|BE360475.1|BE360475 DG1_63_E06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 372
Score = 476 bits (240), Expect = e-132
Identities = 285/300 (95%)
Strand = Plus / Plus
Query: 237 tccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggcc 296
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 tccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggcc 60
Query: 297 gcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgc 356
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccgg 120
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||
Sbjct: 121 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgag 180
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
|||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct: 181 aagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaag 240
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 300
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaa 618
|||||||||||||| ||||||||||||||
Sbjct: 344 ggaggaggagaagaagaagaggaggaaaa 372
Score = 44.1 bits (22), Expect = 0.022
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 582 gcatggccggaggaggagaagaggaagaggagga 615
|||||||||||||||||| ||| ||||| |||||
Sbjct: 333 gcatggccggaggaggaggagaagaagaagagga 366
>gb|BG932961.1|BG932961 DG1_69_E04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 476 bits (240), Expect = e-132
Identities = 285/300 (95%)
Strand = Plus / Plus
Query: 237 tccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggcc 296
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 tccaagatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggcc 60
Query: 297 gcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgc 356
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccgg 120
Query: 357 tcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgag 416
||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||
Sbjct: 121 tcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgag 180
Query: 417 aagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaag 476
|||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct: 181 aagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaag 240
Query: 477 ctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 300
Score = 194 bits (98), Expect = 1e-047
Identities = 199/227 (87%), Gaps = 13/227 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 342 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 401
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 402 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 459
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 460 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 513
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatccta 811
||||||| ||| |||||||||||||| |||||| ||||||||||||
Sbjct: 514 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatccta 560
>gb|BE356652.1|BE356652 DG1_126_A06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 417
Score = 474 bits (239), Expect = e-132
Identities = 281/295 (95%)
Strand = Plus / Plus
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccg 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 5 gatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccg 64
Query: 302 cgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgtt 361
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 65 cgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgtt 124
Query: 362 cccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagct 421
|||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||
Sbjct: 125 cccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagct 184
Query: 422 caagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgt 481
||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 185 caagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgt 244
Query: 482 cgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 299
Score = 103 bits (52), Expect = 3e-020
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 341 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 400
Query: 649 tgtc 652
||||
Sbjct: 401 tgtc 404
>gb|CD431991.1|CD431991 ETH1_12_C08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_12_C08_A002 3', mRNA sequence
Length = 580
Score = 474 bits (239), Expect = e-132
Identities = 281/295 (95%)
Strand = Plus / Plus
Query: 242 gatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccg 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 5 gatcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccg 64
Query: 302 cgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgtt 361
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 65 cgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgtt 124
Query: 362 cccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagct 421
|||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||
Sbjct: 125 cccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagct 184
Query: 422 caagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgt 481
||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 185 caagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgt 244
Query: 482 cgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 299
Score = 204 bits (103), Expect = 1e-050
Identities = 216/247 (87%), Gaps = 15/247 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 341 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtaccccgtgta 400
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 401 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 458
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 459 atccgtatgtgtgt------gtggcgttgttctttcttctttgtgtagctgccctgtcac 512
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 513 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 572
Query: 823 tttgggg 829
|||||||
Sbjct: 573 tttgggg 579
>gb|CF072697.1|CF072697 FE1_25_E09.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_E09_A002 3', mRNA sequence
Length = 597
Score = 464 bits (234), Expect = e-129
Identities = 279/294 (94%)
Strand = Plus / Plus
Query: 243 atcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgc 302
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 atcaccaagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgc 60
Query: 303 gtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttc 362
|||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 61 gtcgccgtcgccgagggcaccgcccccgcggcgaaccggatcgcggacagccggtcgttc 120
Query: 363 ccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctc 422
||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 121 ccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctc 180
Query: 423 aagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtc 482
|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct: 181 aagtcccccggcgaggagtgcaccaaggtgttcaccggcatcaaccagggcaagctcgtc 240
Query: 483 gaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 294
Score = 222 bits (112), Expect = 4e-056
Identities = 222/252 (88%), Gaps = 15/252 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 336 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 395
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 396 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 453
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 454 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 507
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 508 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 567
Query: 823 tttggggtgaac 834
||||||||||||
Sbjct: 568 tttggggtgaac 579
>gb|CD426231.1|CD426231 SA1_19_D09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_19_D09_A002 3', mRNA sequence
Length = 595
Score = 456 bits (230), Expect = e-126
Identities = 274/289 (94%)
Strand = Plus / Plus
Query: 248 caagttcgaggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgc 307
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 caagttcgaggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgtcgc 60
Query: 308 cgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcccgct 367
||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 61 cgtcgccgaggncaccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgct 120
Query: 368 gtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtc 427
|||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 121 gtaccgcttcgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtc 180
Query: 428 ccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccc 487
||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct: 181 ccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccc 240
Query: 488 catgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatgctagagtgcctcaaggagtgggacggcaagccgctgcccatcaac 289
Score = 222 bits (112), Expect = 4e-056
Identities = 222/252 (88%), Gaps = 15/252 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 331 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 390
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 391 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 448
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 449 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 502
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 503 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 562
Query: 823 tttggggtgaac 834
||||||||||||
Sbjct: 563 tttggggtgaac 574
>gb|BE360126.1|BE360126 DG1_61_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 426 bits (215), Expect = e-117
Identities = 260/275 (94%)
Strand = Plus / Plus
Query: 262 agctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggca 321
||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||
Sbjct: 1 agctccgcgcggtgctgccacgggaggtggagtccgcccgcgtcgccgtcgccgagggca 60
Query: 322 ccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgc 381
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 61 ccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtcc 120
Query: 382 gccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagt 441
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 121 gcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagt 180
Query: 442 gcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcc 501
||| |||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct: 181 gcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccctatgctagagtgcc 240
Query: 502 tcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaaggagtgggacggcaagccgctgcccatcaac 275
Score = 149 bits (75), Expect = 5e-034
Identities = 181/208 (87%), Gaps = 15/208 (7%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 317 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 376
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 377 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 434
Query: 705 atc-catatgtgtgtgcgtgtgtggcgttgttctttcttct-ttgtgtagctgccctgcc 762
||| | |||||||| ||||||||||||||||||||| |||||||||||||||| |
Sbjct: 435 atcacgtatgtgtg------tgtggcgttgttctttcttctattgtgtagctgccctgtc 488
Query: 763 accgcctgcaatgcgcatgccatggcag 790
||||||||| ||| ||||||||||||||
Sbjct: 489 accgcctgcgatgtgcatgccatggcag 516
>gb|BE360152.1|BE360152 DG1_61_D02.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 422 bits (213), Expect = e-116
Identities = 261/277 (94%)
Strand = Plus / Plus
Query: 260 ggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgaggg 319
|||||||||||||||||| || | |||||||||| |||||||||||||||||||||||||
Sbjct: 1 ggagctccgcgcggtgctcccacgggaggtggagtccgcccgcgtcgccgtcgccgaggg 60
Query: 320 caccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgt 379
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 caccgcccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgt 120
Query: 380 gcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgagga 439
||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 121 ccgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgagga 180
Query: 440 gtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtg 499
||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 181 gtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccctatgctagagtg 240
Query: 500 cctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctcaaggagtgggacggcaagccgctgcccatcaac 277
Score = 149 bits (75), Expect = 5e-034
Identities = 181/208 (87%), Gaps = 15/208 (7%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 378
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 379 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 436
Query: 705 atc-catatgtgtgtgcgtgtgtggcgttgttctttcttct-ttgtgtagctgccctgcc 762
||| | |||||||| ||||||||||||||||||||| |||||||||||||||| |
Sbjct: 437 atcacgtatgtgtg------tgtggcgttgttctttcttctattgtgtagctgccctgtc 490
Query: 763 accgcctgcaatgcgcatgccatggcag 790
||||||||| ||| ||||||||||||||
Sbjct: 491 accgcctgcgatgtgcatgccatggcag 518
>gb|BI211453.1|BI211453 IP1_57_A06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 562
Score = 420 bits (212), Expect = e-116
Identities = 263/280 (93%)
Strand = Plus / Plus
Query: 257 ggaggagctccgcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccga 316
|||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 1 ggaggagctccgcgcggtgctgccacgggaggtggaggccgcccgcgttgccgtcgccga 60
Query: 317 gggcaccgcccccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgctt 376
|||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gggcactacccccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgctt 120
Query: 377 cgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcga 436
||| ||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 121 cgtccgcgaggagctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcga 180
Query: 437 ggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcga 496
|||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| ||
Sbjct: 181 ggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcgtcgaccctatgctaga 240
Query: 497 gtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgcctcaaggagtgggacggcaagccgctgcccatcaac 280
Score = 196 bits (99), Expect = 2e-048
Identities = 229/265 (86%), Gaps = 18/265 (6%)
Strand = Plus / Plus
Query: 577 tccgcgcatggccgg---aggaggagaagaggaagaggaggaaaatacatgaaaaataaa 633
|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 306 tccgtgcatggccggagtaggaggagaagaagaagaggaggaaaatacatgaaaaataaa 365
Query: 634 acttgtaca-cgtgtatgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttt 689
||||||||| |||||||| ||||||| |||| | ||||||| |||| |||||||||
Sbjct: 366 acttgtacaccgtgtatg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttt 423
Query: 690 tcgttgt-attggtcgatccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgt 748
| ||||| |||| ||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct: 424 tggttgtgattgatcgatccgtatgt------gtgtgtggcgttgttctttctcctttgt 477
Query: 749 gtagctgccctgccaccgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatc 808
|||||||||||| |||||||||| ||| |||||||||||||| |||||| |||||||||
Sbjct: 478 gtagctgccctgtcaccgcctgcgatgtgcatgccatggcagacagcgttttctaagatc 537
Query: 809 c--tatactgttgtattttggggtg 831
| |||||||| |||||||||||||
Sbjct: 538 ctatatactgtcgtattttggggtg 562
>gb|BG158592.1|BG158592 RHIZ2_42_E08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 558
Score = 406 bits (205), Expect = e-111
Identities = 256/271 (94%), Gaps = 4/271 (1%)
Strand = Plus / Plus
Query: 286 aggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcg 345
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 aggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcg 60
Query: 346 cggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcc 405
|||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct: 61 cggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctgggctgcgtgttcc 120
Query: 406 tcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatca 465
| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 121 tgacgggcgagaagctcaagtcccccggcgaggagtgc-acaaggtgttcaacggcatca 179
Query: 466 gccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgc 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 accagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgc 239
Query: 526 tgcccatcaa---catcaactaaaagacgcc 553
|||||||||| | ||||||||||||||||
Sbjct: 240 tgcccatcaacgtcgtcaactaaaagacgcc 270
Score = 204 bits (103), Expect = 1e-050
Identities = 223/255 (87%), Gaps = 16/255 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 297 ggaggaggaggagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 356
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgta-ttggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| |||||| ||| |||
Sbjct: 357 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtaattgatcg 414
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 415 atccgtatgtgtgt------gtggcgttgttctttcttctttgtgtagctgccctgtcac 468
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||| ||
Sbjct: 469 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttg-at 527
Query: 823 tttggggtgaactac 837
|||||||||||||||
Sbjct: 528 tttggggtgaactac 542
>gb|AW922837.1|AW922837 DG1_46_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 367
Score = 394 bits (199), Expect = e-108
Identities = 235/247 (95%)
Strand = Plus / Plus
Query: 290 ggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcgga 349
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcgga 60
Query: 350 cagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcac 409
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 61 cagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgttcctgac 120
Query: 410 cggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagcca 469
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct: 121 gggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaacca 180
Query: 470 gggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcc 529
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 gggcaagctcgtcgaccctatgctagagtgcctcaaggagtgggacggcaagccgctgcc 240
Query: 530 catcaac 536
|||||||
Sbjct: 241 catcaac 247
Score = 103 bits (52), Expect = 3e-020
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 289 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 348
Query: 649 tgtc 652
||||
Sbjct: 349 tgtc 352
>gb|BF585486.1|BF585486 FM1_23_B02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 385 bits (194), Expect = e-105
Identities = 241/256 (94%), Gaps = 3/256 (1%)
Strand = Plus / Plus
Query: 301 gcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagccgctcgt 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1 gcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggatcgcggacagccggtcgt 60
Query: 361 tcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggcgagaagc 420
||||||||||||||||||| ||| ||||||| |||||||||||||| || ||||||||||
Sbjct: 61 tcccgctgtaccgcttcgtccgcgaggagctgggctgcgtgttcctgacgggcgagaagc 120
Query: 421 tcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcg 480
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct: 121 tcaagtcccccggcgaggagtgcaccaaggtgttcaacggcatcaaccagggcaagctcg 180
Query: 481 tcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaa---ca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 tcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatcaacgtcg 240
Query: 538 tcaactaaaagacgcc 553
||||||||||||||||
Sbjct: 241 tcaactaaaagacgcc 256
Score = 190 bits (96), Expect = 2e-046
Identities = 200/229 (87%), Gaps = 13/229 (5%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 283 ggaggaggaggagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 342
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgta-ttggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| |||||| ||| |||
Sbjct: 343 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtaattgatcg 400
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 401 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 454
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcctata 813
||||||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 455 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctata 503
>gb|CW322471.1|CW322471 104_816_11476115_148_35952_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476115, DNA
sequence
Length = 705
Score = 383 bits (193), Expect = e-104
Identities = 251/269 (93%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 268 gcgcggtgctgccccaggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgccc 327
||||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 705 gcgcggtgctgccacgggag-tggaggccgcccgcgtcgccgtcgcgaggggcaccgccc 647
Query: 328 ccgtggccaaccggatcgcggacagccgctcgttcccgctgtaccgcttcgtgcgccagg 387
||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct: 646 ccgtggcgaaccggatcgcggacagccggtcgttcccgctgtaccgcttcgtccgcgagg 587
Query: 388 agctcggctgcgtgttcctcaccggcgagaagctcaagtcccccggcgaggagtgcaaca 447
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct: 586 agctcggctgcgtgttcctgacgggcgagaagctcaagtcccccggcgaggagtgcacca 527
Query: 448 aggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctcaagg 507
|||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 526 aggtgttcaacggcatcaaccagggcaagctcgtcgaccctatgctagagtgcctcaagg 467
Query: 508 agtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||||||||||||||
Sbjct: 466 agtgggacggcaagccgctgcccatcaac 438
Score = 222 bits (112), Expect = 4e-056
Identities = 222/252 (88%), Gaps = 15/252 (5%)
Strand = Plus / Minus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtacac-gtgta 648
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 396 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 337
Query: 649 tgtctccagattgtgcc-gccgtcgttc--tcgtcgttgacttttcgttgt-attggtcg 704
|||| ||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 336 tgtc--cagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 279
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 278 atccgtatgtgtgtg------tggcgttgttctttcttctttgtgtagctgccctgtcac 225
Query: 765 cgcctgcaatgcgcatgccatggcaggtagcgttgtctaagatcc--tatactgttgtat 822
||||||| ||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 224 cgcctgcgatgtgcatgccatggcagacagcgttttctaagatcctatatactgttgtat 165
Query: 823 tttggggtgaac 834
||||||||||||
Sbjct: 164 tttggggtgaac 153
Score = 40.1 bits (20), Expect = 0.34
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 849 tcaatttcttcttctaagtatcct 872
|||||| |||||||||||||||||
Sbjct: 149 tcaattccttcttctaagtatcct 126
>gb|BE366988.1|BE366988 PI1_42_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 383 bits (193), Expect = e-104
Identities = 238/253 (94%)
Strand = Plus / Plus
Query: 284 ggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggat 343
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7 ggaggtggaggccgcccgcgtcgccgtcgccgagggcaccgcccccgtggcgaaccggat 66
Query: 344 cgcggacagccgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgtt 403
|||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct: 67 cgcggacagccggtcgttcccgctgtaccgcttcgtccgcgaggagctcgtctgcgtgtt 126
Query: 404 cctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcat 463
||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 127 cctgacgggcgagaagctcaagtcccccggcgaggagtgcaccaaggtgttcaacggcat 186
Query: 464 cagccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagcc 523
|| ||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||
Sbjct: 187 caaccagggcaagctcgtcgaccctatgatagagtgcctcaaggagtggcacggcaagcc 246
Query: 524 gctgcccatcaac 536
|||||||||||||
Sbjct: 247 gctgcccatcaac 259
Score = 161 bits (81), Expect = 1e-037
Identities = 179/206 (86%), Gaps = 13/206 (6%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggaggaaaatacatgaaaaataaaacttgtaca-cgtgta 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 ggaggaggagaagaagaagaggaggaaaatacatgaaaaataaaacttgtacaccgtgta 360
Query: 649 tgtctccagattgtgc-cgccgtcgtt--ctcgtcgttgacttttcgttgt-attggtcg 704
|| ||||||| |||| | ||||||| |||| |||||||||| ||||| |||| |||
Sbjct: 361 tg--tccagatcgtgcgtgtcgtcgtttcttcgttgttgacttttggttgtgattgatcg 418
Query: 705 atccatatgtgtgtgcgtgtgtggcgttgttctttcttctttgtgtagctgccctgccac 764
|||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 419 atccgtatgt------gtgtgtggcgttgttctttcttctttgtgtagctgccctgtcac 472
Query: 765 cgcctgcaatgcgcatgccatggcag 790
||| | | ||| ||||||||||||||
Sbjct: 473 cgcatacgatgtgcatgccatggcag 498
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 361,781
Number of Sequences: 832831
Number of extensions: 361781
Number of successful extensions: 116243
Number of sequences better than 0.5: 197
Number of HSP's better than 0.5 without gapping: 194
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 115545
Number of HSP's gapped (non-prelim): 560
length of query: 885
length of database: 491,359,669
effective HSP length: 20
effective length of query: 865
effective length of database: 474,703,049
effective search space: 410618137385
effective search space used: 410618137385
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)