BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation... 194 5e-048
gb|CW391693.1|CW391693 fsbb001f077p12f0 Sorghum methylation... 163 2e-038
gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (L... 149 2e-034
gb|CL177219.1|CL177219 104_384_10893686_148_31915_134 Sorgh... 119 2e-025
gb|CW147348.1|CW147348 104_540_11139465_148_34992_037 Sorgh... 54 1e-005
gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum m... 50 2e-004
gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorgh... 50 2e-004
gb|CW146142.1|CW146142 104_539_11138833_148_34984_015 Sorgh... 50 2e-004
gb|CW150217.1|CW150217 104_549_11142910_116_36306_087 Sorgh... 50 2e-004
gb|CW150218.1|CW150218 104_549_11142910_148_36305_087 Sorgh... 50 2e-004
gb|CW188249.1|CW188249 104_608_11172930_116_36732_079 Sorgh... 50 2e-004
gb|CW188250.1|CW188250 104_608_11172930_148_36731_079 Sorgh... 50 2e-004
gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation... 50 2e-004
gb|CW390673.1|CW390673 fsbb001f076g23f0 Sorghum methylation... 50 2e-004
gb|CW417257.1|CW417257 fsbb001f120c20k0 Sorghum methylation... 50 2e-004
gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorgh... 40 0.16
>gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147b04, DNA
sequence
Length = 564
Score = 194 bits (98), Expect = 5e-048
Identities = 113/118 (95%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 207 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcatcctccatggcagcac 266
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctggatgcttaaccggt 120
||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 267 ttgaagcagctcttgtgatacatagtgttgttgacagtaacctggatgcttaatcggt 324
>gb|CW391693.1|CW391693 fsbb001f077p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077p12, DNA
sequence
Length = 677
Score = 163 bits (82), Expect = 2e-038
Identities = 184/215 (85%), Gaps = 16/215 (7%)
Strand = Plus / Plus
Query: 209 gctgcatccaacacatttctctctggtgccagcaaaggcgcttgagactttagtagcatt 268
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 gctgcatccaacacatttctctctggtgccagcaaaggcgcttgagactttaacagcatt 60
Query: 269 ctgccaaataatatgcaatcatgatgagcatcatctagtgccagttgttcataa----ag 324
||||||| || ||| |||||||||||||||||||||||||||||||| |||| ||
Sbjct: 61 ctgccaatta---tgctatcatgatgagcatcatctagtgccagttgttgataaataaag 117
Query: 325 aacaaaacatgaatggtgtcaactggatgggtgatataaaacatgtttaaaaccatatac 384
|| |||| |||||| ||| |||||||| |||||| || ||| |||||| ||| |
Sbjct: 118 aataaaagatgaatagtgccaactgga----tgatatgaagcat---taaaacaata--c 168
Query: 385 agcactgatctagtcatatgcctcatgaatatcaa 419
| ||||||||||||||| ||||||||||| |||||
Sbjct: 169 aacactgatctagtcatctgcctcatgaagatcaa 203
>gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 674
Score = 149 bits (75), Expect = 2e-034
Identities = 87/91 (95%)
Strand = Plus / Minus
Query: 15 tgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctc 74
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 674 tgcgcaatgtagttagaagggctgatggtgcatcctccatggcagcacttgaagcagctc 615
Query: 75 ttgtggtacatagtgttgttaacagtgacct 105
||||| |||||||||||||| ||||| ||||
Sbjct: 614 ttgtgatacatagtgttgttgacagtaacct 584
Score = 143 bits (72), Expect = 2e-032
Identities = 81/84 (96%)
Strand = Plus / Minus
Query: 187 tctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagcaaagg 246
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tctcaattggatagactgtcttgctgcatccaacacatttctctctggtgccagcaaagg 524
Query: 247 cgcttgagactttagtagcattct 270
|||||||||||||| ||||||||
Sbjct: 523 cgcttgagactttaacagcattct 500
>gb|CL177219.1|CL177219 104_384_10893686_148_31915_134 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893686, DNA
sequence
Length = 646
Score = 119 bits (60), Expect = 2e-025
Identities = 162/193 (83%), Gaps = 16/193 (8%)
Strand = Plus / Plus
Query: 231 ctggtgccagcaaaggcgcttgagactttagtagcattctgccaaataatatgcaatcat 290
|||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||
Sbjct: 1 ctggtgccagcaaaggcgcttgagactttaacagcattctgccaatta---tgctatcat 57
Query: 291 gatgagcatcatctagtgccagttgttcataa----agaacaaaacatgaatggtgtcaa 346
||||||||||||||||||||||||||| |||| |||| |||| |||||| ||| |||
Sbjct: 58 gatgagcatcatctagtgccagttgttgataaataaagaataaaagatgaatagtgccaa 117
Query: 347 ctggatgggtgatataaaacatgtttaaaaccatatacagcactgatctagtcatatgcc 406
||||| |||||| || ||| |||||| ||| || ||||||||||||||| ||||
Sbjct: 118 ctgga----tgatatgaagcat---taaaacaata--caacactgatctagtcatctgcc 168
Query: 407 tcatgaatatcaa 419
||||||| |||||
Sbjct: 169 tcatgaagatcaa 181
>gb|CW147348.1|CW147348 104_540_11139465_148_34992_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139465, DNA
sequence
Length = 750
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 381 atacagcactgatctagtcatatgcctcatgaatatcaa 419
||||| ||||||||||||||| ||||||||||| |||||
Sbjct: 6 atacaacactgatctagtcatctgcctcatgaagatcaa 44
>gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318,
DNA sequence
Length = 631
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 72 agcacttgaagcagctcttgtggta 96
>gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 553
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 119 agcacttgaagcagctcttgtggta 143
>gb|CW146142.1|CW146142 104_539_11138833_148_34984_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138833, DNA
sequence
Length = 676
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 509 agcacttgaagcagctcttgtggta 533
>gb|CW150217.1|CW150217 104_549_11142910_116_36306_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142910, DNA
sequence
Length = 653
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 158 agcacttgaagcagctcttgtggta 134
>gb|CW150218.1|CW150218 104_549_11142910_148_36305_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142910, DNA
sequence
Length = 668
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 537 agcacttgaagcagctcttgtggta 561
>gb|CW188249.1|CW188249 104_608_11172930_116_36732_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172930, DNA
sequence
Length = 627
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 487 agcacttgaagcagctcttgtggta 511
>gb|CW188250.1|CW188250 104_608_11172930_148_36731_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172930, DNA
sequence
Length = 623
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 153 agcacttgaagcagctcttgtggta 129
>gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 671
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 289 agcacttgaagcagctcttgtggta 313
>gb|CW390673.1|CW390673 fsbb001f076g23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076g23, DNA
sequence
Length = 706
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 194 agcacttgaagcagctcttgtggta 170
>gb|CW417257.1|CW417257 fsbb001f120c20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f120c20, DNA
sequence
Length = 777
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 515 agcacttgaagcagctcttgtggta 539
>gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11103418, DNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttg 77
||||||||||||||||||||
Sbjct: 45 agcacttgaagcagctcttg 26
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,965
Number of Sequences: 832831
Number of extensions: 108965
Number of successful extensions: 29910
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29886
Number of HSP's gapped (non-prelim): 22
length of query: 438
length of database: 491,359,669
effective HSP length: 19
effective length of query: 419
effective length of database: 475,535,880
effective search space: 199249533720
effective search space used: 199249533720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)