BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804972.2.1
(1311 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN152656.1|CN152656 WOUND1_83_A06.g1_A002 Wounded leaves... 1065 0.0
gb|CF482349.1|CF482349 POL1_6_A05.g1_A002 Pollen Sorghum bi... 896 0.0
gb|CD225805.1|CD225805 CCC1_41_H04.g1_A007 Callus culture/c... 773 0.0
gb|CF480908.1|CF480908 POL1_68_F11.g1_A002 Pollen Sorghum b... 722 0.0
gb|CD225698.1|CD225698 CCC1_41_H04.b1_A007 Callus culture/c... 706 0.0
gb|BM323476.1|BM323476 PIC1_19_G04.b1_A002 Pathogen-infecte... 593 e-167
gb|CF482272.1|CF482272 POL1_6_A05.b1_A002 Pollen Sorghum bi... 519 e-145
gb|CF480844.1|CF480844 POL1_68_F11.b1_A002 Pollen Sorghum b... 482 e-134
gb|BM327976.1|BM327976 PIC1_19_G04.g1_A002 Pathogen-infecte... 355 7e-096
gb|CL194755.1|CL194755 104_419_10941878_116_32299_055 Sorgh... 254 2e-065
gb|CW217707.1|CW217707 104_651_11195794_148_37070_047 Sorgh... 230 3e-058
gb|AW284368.1|AW284368 LG1_275_F09.g1_A002 Light Grown 1 (L... 206 4e-051
gb|BZ336368.1|BZ336368 hz33f08.g1 WGS-SbicolorF (JM107 adap... 192 6e-047
gb|CW021210.1|CW021210 104_109_10409416_114_30492 Sorghum m... 192 6e-047
gb|CW217706.1|CW217706 104_651_11195794_116_37071_047 Sorgh... 192 6e-047
gb|BQ656233.1|BQ656233 pSHR0149.3 Sorghum halepense rhizome... 78 2e-012
gb|AW284369.1|AW284369 LG1_275_F10.g1_A002 Light Grown 1 (L... 76 9e-012
gb|CW162184.1|CW162184 104_569_11150811_148_36439_010 Sorgh... 56 9e-006
gb|CW216905.1|CW216905 104_649_11195370_116_37128_065 Sorgh... 56 9e-006
gb|CW273767.1|CW273767 104_746_11404076_148_35369_074 Sorgh... 56 9e-006
gb|CW295946.1|CW295946 104_777_11461224_148_35625_088 Sorgh... 56 9e-006
gb|CB925802.1|CB925802 ABA1_23_F05.g1_A012 Abscisic acid-tr... 56 9e-006
gb|CF428334.1|CF428334 PH1_14_C04.g1_A002 Phosphorous-defic... 56 9e-006
gb|CL194754.1|CL194754 104_419_10941878_114_32295_055 Sorgh... 54 3e-005
gb|CW185512.1|CW185512 104_603_11166099_148_36698_012 Sorgh... 52 1e-004
gb|AW923197.1|AW923197 DG1_50_E07.b1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|BE357273.1|BE357273 DG1_148_D02.b1_A002 Dark Grown 1 (DG... 52 1e-004
gb|CD210805.1|CD210805 HS1_49_C07.g1_A012 Heat-shocked seed... 50 5e-004
gb|CW353195.1|CW353195 fsbb001f015n13k0 Sorghum methylation... 44 0.032
gb|CB925645.1|CB925645 ABA1_22_G02.g1_A012 Abscisic acid-tr... 44 0.032
gb|CB926819.1|CB926819 ABA1_10_G05.g1_A012 Abscisic acid-tr... 44 0.032
gb|CD228254.1|CD228254 CCC1_6_B12.g1_A007 Callus culture/ce... 44 0.032
gb|CN145669.1|CN145669 WOUND1_34_B03.g1_A002 Wounded leaves... 44 0.032
gb|CN147237.1|CN147237 WOUND1_48_B05.g1_A002 Wounded leaves... 44 0.032
gb|CX619593.1|CX619593 GABR1_46_B10.g1_A002 GA- or brassino... 44 0.032
>gb|CN152656.1|CN152656 WOUND1_83_A06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_83_A06_A002 5', mRNA sequence
Length = 857
Score = 1065 bits (537), Expect = 0.0
Identities = 686/735 (93%), Gaps = 3/735 (0%)
Strand = Plus / Plus
Query: 113 ggggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgt 172
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 126 gggggcggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggatcgt 185
Query: 173 caggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccc 232
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 186 caggctgctcctcgaccgcggctacaccgtccgcgccaccgtgcgggacaccgctgaccc 245
Query: 233 aaagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaa 292
|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 246 aaagaaaacattgcacctgactgctctggatggagccaaggataggctgcacttatttaa 305
Query: 293 agctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtatt 352
||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 306 agctagcctgctagaagagggctcttttgacgctgcagttcatggatgtgacaccgtatt 365
Query: 353 tcatactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccc 412
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 366 ccatactgcctctcccttttatcacaatgtcaaggatcctaaggctgagttacttgaccc 425
Query: 413 agcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggt 472
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||
Sbjct: 426 agcagttaagggaacactcaatgttcttggttcatgcaagaaagcttctattacaaaagt 485
Query: 473 ggttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggt 532
|||| ||||||| |||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 486 ggttataacatcctctatggctgctgtttcctacaacgagaagccaaggactcctgaggt 545
Query: 533 cacagttgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggta 592
|||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct: 546 cacagttgacgagacatggtttactgatccacaaatttgtgaaaagactcagcaatggta 605
Query: 593 tattttgtccaagacgctggcagaggaggctgcttggaagttctcaagggataatggact 652
| |||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
Sbjct: 606 tgttttgtccaagacgctcgcagagcaggctgcttggaagttttcaagggataatggatt 665
Query: 653 tgaaatcgttactataaacccagcgatggttattggtcccctgctgcagcctacactaaa 712
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 666 tgaaattgttactataaacccagcaatggttattggtcccctgctccagcctacactaaa 725
Query: 713 taccagtgctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaattt 772
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 726 taccagtgctgaagcaatcctgaagttaatcaatgg---atcatctacatatcccaattc 782
Query: 773 ttgctttggatgggttaatgtcaaggatgttgccctggcccatatccttgcatacgaggt 832
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct: 783 aagctttggatgggttaatgtcaaagatgttgccctggcccatatccttgcatatgagat 842
Query: 833 tccctcatcaaatgg 847
|||||| |||||||
Sbjct: 843 tccctcggcaaatgg 857
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 59 caggctcaggcgcaacgcaacaa 81
>gb|CF482349.1|CF482349 POL1_6_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_6_A05_A002 5', mRNA sequence
Length = 782
Score = 896 bits (452), Expect = 0.0
Identities = 589/634 (92%), Gaps = 3/634 (0%)
Strand = Plus / Plus
Query: 205 gcgccaccgtgcgagacaccgctgacccaaagaaaacattgcacctgactgcgttggatg 264
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 144 gcgccaccgtgcgggacaccgctgacccaaagaaaacattgcacctgactgctctggatg 203
Query: 265 gtgctaaggataggctgcacttatttaaagctagcctgctagaagagggttctttcgatg 324
| || |||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 204 gagccaaggataggctgcacttatttaaagctagcctgctagaagagggctcttttgacg 263
Query: 325 ctgcagttcatggatgcgacactgtatttcatactgcctctcccttttatcacaatgtca 384
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 264 ctgcagttcatggatgtgacaccgtattccatactgcctctcccttttatcacaatgtca 323
Query: 385 aggatgctaaggcagagttacttgacccagcagttaagggaacactcaatgttctcggtt 444
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 aggatcctaaggctgagttacttgacccagcagttaagggaacactcaatgttcttggtt 383
Query: 445 catgcaagaaagcttctattaaaaaggtggttgtaacatcatctatggctgctgtagcct 504
||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||| |||
Sbjct: 384 catgcaagaaagcttctattacaaaagtggttataacatcctctatggctgctgtttcct 443
Query: 505 acaacgggaggccaaggactcctgaggtcacagttgacgagacatggttttctgatccac 564
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 acaacgagaagccaaggactcctgaggtcacagttgacgagacatggtttactgatccac 503
Query: 565 aaatttgtgaaacaaatcagcaatggtatattttgtccaagacgctggcagaggaggctg 624
|||||||||||| | ||||||||||||| ||||||||||||| || |||||| ||||||
Sbjct: 504 aaatttgtgaaaagactcagcaatggtatgttttgtccaagacactcgcagagcaggctg 563
Query: 625 cttggaagttctcaagggataatggacttgaaatcgttactataaacccagcgatggtta 684
|||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 564 cttggaagttttcaagggataatggatttgaaattgttactataaacccagcaatggtta 623
Query: 685 ttggtcccctgctgcagcctacactaaataccagtgctgaagcaatcctgaagttaatca 744
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggtcccctgctccagcctacactaaataccagtgctgaagcaatcctgaagttaatca 683
Query: 745 atgggtcatcgtctacatatcccaatttttgctttggatgggttaatgtcaaggatgttg 804
|||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 684 atgg---atcatctacatatcccaattcaagctttggatgggttaatgtcaaagatgttg 740
Query: 805 ccctggcccatatccttgcatacgaggttccctc 838
|||||||||||||||||||||| ||| |||||||
Sbjct: 741 ccctggcccatatccttgcatatgagattccctc 774
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 57 caggctcaggcgcaacgcaacaa 79
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 113 ggggacggggaaggtggtgtgcgtcaccg 141
|||| |||||||||||||||||| |||||
Sbjct: 124 gggggcggggaaggtggtgtgcgccaccg 152
>gb|CD225805.1|CD225805 CCC1_41_H04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H04_A007 5', mRNA sequence
Length = 659
Score = 773 bits (390), Expect = 0.0
Identities = 489/522 (93%)
Strand = Plus / Plus
Query: 113 ggggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgt 172
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 137 gggggcggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggatcgt 196
Query: 173 caggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccc 232
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 197 caggctgctcctcgaccgcggctacaccgtccgcgccaccgtgcgggacaccgctgaccc 256
Query: 233 aaagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaa 292
|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 257 aaagaaaacattgcacctgactgctctggatggagccaaggataggctgcacttatttaa 316
Query: 293 agctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtatt 352
||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 317 agctagcctgctagaagagggctcttttgacgctgcagttcatggatgtgacaccgtatt 376
Query: 353 tcatactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccc 412
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 377 ccatactgcctctcccttttatcacaatgtcaaggatcctaaggctgagttacttgaccc 436
Query: 413 agcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggt 472
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||
Sbjct: 437 agcagttaagggaacactcaatgttcttggttcatgcaagaaagcttctattacaaaagt 496
Query: 473 ggttgtaacatcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggt 532
|||| ||||||| |||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 497 ggttataacatcctctatggctgctgtttcctacaacgagaagccaaggactcctgaggt 556
Query: 533 cacagttgacgagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggta 592
|||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct: 557 cacagttgacgagacatggtttactgatccacaaatttgtgaaaagactcagcaatggta 616
Query: 593 tattttgtccaagacgctggcagaggaggctgcttggaagtt 634
| ||||||||||||| || |||||| ||||||||||||||||
Sbjct: 617 tgttttgtccaagacactcgcagagcaggctgcttggaagtt 658
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 70 caggctcaggcgcaacgcaacaa 92
>gb|CF480908.1|CF480908 POL1_68_F11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_F11_A002 5', mRNA sequence
Length = 773
Score = 722 bits (364), Expect = 0.0
Identities = 468/502 (93%), Gaps = 3/502 (0%)
Strand = Plus / Plus
Query: 270 aaggataggctgcacttatttaaagctagcctgctagaagagggttctttcgatgctgca 329
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 265 aaggataggctgcacttatttaaagctagcctgctagaagagggctcttttgacgctgca 324
Query: 330 gttcatggatgcgacactgtatttcatactgcctctcccttttatcacaatgtcaaggat 389
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcatggatgtgacaccgtattccatactgcctctcccttttatcacaatgtcaaggat 384
Query: 390 gctaaggcagagttacttgacccagcagttaagggaacactcaatgttctcggttcatgc 449
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 cctaaggctgagttacttgacccagcagttaagggaacactcaatgttcttggttcatgc 444
Query: 450 aagaaagcttctattaaaaaggtggttgtaacatcatctatggctgctgtagcctacaac 509
|||||||||||||||| ||| |||||| ||||||| |||||||||||||| ||||||||
Sbjct: 445 aagaaagcttctattacaaaagtggttataacatcctctatggctgctgtttcctacaac 504
Query: 510 gggaggccaaggactcctgaggtcacagttgacgagacatggttttctgatccacaaatt 569
| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 gagaagccaaggactcctgaggtcacagttgacgagacatggtttactgatccacaaatt 564
Query: 570 tgtgaaacaaatcagcaatggtatattttgtccaagacgctggcagaggaggctgcttgg 629
||||||| | ||||||||||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 565 tgtgaaaagactcagcaatggtatgttttgtccaagacactcgcagagcaggctgcttgg 624
Query: 630 aagttctcaagggataatggacttgaaatcgttactataaacccagcgatggttattggt 689
||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct: 625 aagttttcaagggataatggatttgaaattgttactataaacccagcaatggttattggt 684
Query: 690 cccctgctgcagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatggg 749
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cccctgctccagcctacactaaataccagtgctgaagcaatcctgaagttaatcaatgg- 743
Query: 750 tcatcgtctacatatcccaatt 771
||| ||||||||||||||||
Sbjct: 744 --atcatctacatatcccaatt 763
Score = 208 bits (105), Expect = 1e-051
Identities = 114/117 (97%)
Strand = Plus / Plus
Query: 118 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggc 177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 150 cggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggatcgtcaggc 209
Query: 178 tcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgacccaa 234
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 210 tgctcctcgaccgcggctacaccgtccgcgccaccgtgcgggacaccgctgacccaa 266
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 77 caggctcaggcgcaacgcaacaa 99
>gb|CD225698.1|CD225698 CCC1_41_H04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H04_A007 3', mRNA sequence
Length = 645
Score = 706 bits (356), Expect = 0.0
Identities = 570/637 (89%), Gaps = 7/637 (1%)
Strand = Plus / Plus
Query: 600 tccaagacgctggcagaggaggctgcttggaagttctcaagggataatggacttgaaatc 659
|||||||| || |||||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct: 1 tccaagacactcgcagagcaggctgcttggaagttttcaagggataatggatttgaaatt 60
Query: 660 gttactataaacccagcgatggttattggtcccctgctgcagcctacactaaataccagt 719
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 gttactataaacccagcaatggttattggtcccctgctccagcctacactaaataccagt 120
Query: 720 gctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaatttttgcttt 779
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 121 gctgaagcaatcctgaagttaatcaatggatcatc---tacatatcccaattcaagcttt 177
Query: 780 ggatgggttaatgtcaaggatgttgccctggcccatatccttgcatacgaggttccctca 839
||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 178 ggatgggttaatgtcaaagatgttgccctggcccatatccttgcatatgagattccctcg 237
Query: 840 tcaaatggaaggtactgcatggtggaaagagttgttcactactcagaactggtgaacatt 899
||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 238 gcaaatggaaggtattgcatggtggaaagagttgttcactactcagaactagtcaaaatc 297
Query: 900 atccgcaacatgtatcctacccttcctcttccggacaagtgtgcagatgacaagccgttt 959
|||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||| |||
Sbjct: 298 atccgcaagatgtatcctaccattcgtcttccagacaagtgtgcagatgacaagccattt 357
Query: 960 gtcccaccctaccaagtatcaaaggagaagataaaaagcataggcatcgagttgattcca 1019
|||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 358 gtcccaacctaccaagtatcaaaggagaagataagaagcataggcattgagttaattcca 417
Query: 1020 ctggagacgagcgtcaaggagaccatcgaaagcttgaaagagaaggggttcgctagtttt 1079
|||||||||||||||||||||| ||||||||||||||||||||||| || | ||| |||
Sbjct: 418 gtggagacgagcgtcaaggagactatcgaaagcttgaaagagaagggatttgttag-ttt 476
Query: 1080 tgactcgagcaagctgtgaaacagaagtgttact-gtactacgtgatgttgcattgtata 1138
|||||||||||| ||||||||||||||| ||||| || ||| |||| |||||| | |
Sbjct: 477 tgactcgagcaacctgtgaaacagaagtattactattagtacctgatactgcattagaga 536
Query: 1139 catgcatcggacttcgcagttcccaagctattttggtagctttggtctgtaagattacct 1198
|||||||| |||||||| ||| |||| | | ||||||||| |||||||| ||||||
Sbjct: 537 catgcatcagacttcgccattcacaag--ttgctagtagctttgatctgtaaggttacct 594
Query: 1199 aaaataaactgagccacgttgccacgctgtagctttt 1235
||||||||||| | ||||| |||||| ||||||||||
Sbjct: 595 aaaataaactgtggcacgtcgccacgttgtagctttt 631
>gb|BM323476.1|BM323476 PIC1_19_G04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 503
Score = 593 bits (299), Expect = e-167
Identities = 365/387 (94%)
Strand = Plus / Plus
Query: 113 ggggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgt 172
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 116 gggggcggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggatcgt 175
Query: 173 caggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccgctgaccc 232
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 176 caggctgctcctcgaccgcggctacaccgtccgcgccaccgtgcgggacaccgctgaccc 235
Query: 233 aaagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcacttatttaa 292
|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 236 aaagaaaacattgcacctgactgctctggatggagccaaggataggctgcacttatttaa 295
Query: 293 agctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgacactgtatt 352
||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 296 agctagcctgctagaagagggctcttttgacgctgcagttcatggatgtgacaccgtatt 355
Query: 353 tcatactgcctctcccttttatcacaatgtcaaggatgctaaggcagagttacttgaccc 412
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 356 ccatactgcctctcccttttatcacaatgtcaaggatcctaaggctgagttacttgaccc 415
Query: 413 agcagttaagggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggt 472
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||
Sbjct: 416 agcagttaagggaacactcaatgttcttggttcatgcaagagagcttctattacaaaagt 475
Query: 473 ggttgtaacatcatctatggctgctgt 499
|||| ||||||| ||||||||||||||
Sbjct: 476 ggttataacatcctctatggctgctgt 502
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 49 caggctcaggcgcaacgcaacaa 71
>gb|CF482272.1|CF482272 POL1_6_A05.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_6_A05_A002
3', mRNA sequence
Length = 562
Score = 519 bits (262), Expect = e-145
Identities = 370/404 (91%), Gaps = 4/404 (0%)
Strand = Plus / Plus
Query: 710 aaataccagtgctgaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaa 769
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1 aaataccagtgctgaagcaatcctgaagttaatcaatggatcatc---tacatatcccaa 57
Query: 770 tttttgctttggatgggttaatgtcaaggatgttgccctggcccatatccttgcatacga 829
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 58 ttcaagctttggatgggttaatgtcaaagatgttgccctggcccatatccttgcatatga 117
Query: 830 ggttccctcatcaaatggaaggtactgcatggtggaaagagttgttcactactcagaact 889
| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 118 gattccctcggcaaatggaaggtattgcatggtggaaagagttgttcactactcagaact 177
Query: 890 ggtgaacattatccgcaacatgtatcctacccttcctcttccggacaagtgtgcagatga 949
|| || || |||||||| |||||||||||| ||| |||||| |||||||||||||||||
Sbjct: 178 agtcaaaatcatccgcaagatgtatcctaccattcgtcttccagacaagtgtgcagatga 237
Query: 950 caagccgtttgtcccaccctaccaagtatcaaaggagaagataaaaagcataggcatcga 1009
|||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 238 caagccatttgtcccaacctaccaagtatcaaaggagaagataagaagcataggcattga 297
Query: 1010 gttgattccactggagacgagcgtcaaggagaccatcgaaagcttgaaagagaaggggtt 1069
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 298 gttaattccagtggagacgagcgtcaaggagactatcgaaagcttgaaagagaagggatt 357
Query: 1070 cgctagtttttgactcgagcaagctgtgaaacagaagtgttact 1113
| ||| ||||||||||||||| ||||||||||||||| |||||
Sbjct: 358 tgttag-ttttgactcgagcaacctgtgaaacagaagtattact 400
Score = 75.8 bits (38), Expect = 9e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1174 gtagctttggtctgtaagattacctaaaataaactgagccacgttgccacgctgtagctt 1233
||||||||| |||||||| ||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 460 gtagctttgatctgtaaggttacctaaaataaactgtggcacgtcgccacgttgtagctt 519
Query: 1234 tt 1235
||
Sbjct: 520 tt 521
>gb|CF480844.1|CF480844 POL1_68_F11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_F11_A002 3', mRNA sequence
Length = 553
Score = 482 bits (243), Expect = e-134
Identities = 410/462 (88%), Gaps = 4/462 (0%)
Strand = Plus / Plus
Query: 775 gctttggatgggttaatgtcaaggatgttgccctggcccatatccttgcatacgaggttc 834
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 10 gctttggatgggttaatgtcaaagatgttgccctggcccatatccttgcatatgagattc 69
Query: 835 cctcatcaaatggaaggtactgcatggtggaaagagttgttcactactcagaactggtga 894
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct: 70 cctcggcaaatggaaggtattgcatggtggaaagagttgttcactactcagaactagtca 129
Query: 895 acattatccgcaacatgtatcctacccttcctcttccggacaagtgtgcagatgacaagc 954
| || |||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 130 aaatcatccgcaagatgtatcctaccattcgtcttccagacaagtgtgcagatgacaagc 189
Query: 955 cgtttgtcccaccctaccaagtatcaaaggagaagataaaaagcataggcatcgagttga 1014
| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 190 catttgtcccaacctaccaagtatcaaaggagaagataagaagcataggcattgagttaa 249
Query: 1015 ttccactggagacgagcgtcaaggagaccatcgaaagcttgaaagagaaggggttcgcta 1074
||||| |||||||||||||||||||||| ||||||||||||||||||||||| || | ||
Sbjct: 250 ttccagtggagacgagcgtcaaggagactatcgaaagcttgaaagagaagggatttgtta 309
Query: 1075 gtttttgactcgagcaagctgtgaaacagaagtgttact-gtactacgtgatgttgcatt 1133
| ||||||||||||||| ||||||||||||||| ||||| || ||| |||| ||||||
Sbjct: 310 g-ttttgactcgagcaacctgtgaaacagaagtattactattagtacctgatactgcatt 368
Query: 1134 gtatacatgcatcggacttcgcagttcccaagctattttggtagctttggtctgtaagat 1193
| ||||||||| |||||||| ||| |||| | | ||||||||| |||||||| |
Sbjct: 369 agagacatgcatcagacttcgccattcacaag--ttgctagtagctttgatctgtaaggt 426
Query: 1194 tacctaaaataaactgagccacgttgccacgctgtagctttt 1235
|||||||||||||||| | ||||| |||||| ||||||||||
Sbjct: 427 tacctaaaataaactgtggcacgtcgccacgttgtagctttt 468
>gb|BM327976.1|BM327976 PIC1_19_G04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 568
Score = 355 bits (179), Expect = 7e-096
Identities = 328/374 (87%), Gaps = 4/374 (1%)
Strand = Plus / Plus
Query: 863 ggaaagagttgttcactactcagaactggtgaacattatccgcaacatgtatcctaccct 922
||||||||||||||||||||||||||| || || || |||||||| |||||||||||| |
Sbjct: 4 ggaaagagttgttcactactcagaactagtcaaaatcatccgcaagatgtatcctaccat 63
Query: 923 tcctcttccggacaagtgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaa 982
|| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 64 tcgtcttccagacaagtgtgcagatgacaagccatttgtcccaacctaccaagtatcaaa 123
Query: 983 ggagaagataaaaagcataggcatcgagttgattccactggagacgagcgtcaaggagac 1042
||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 124 ggagaagataagaagcataggcattgagttaattccagtggagacgagcgtcaaggagac 183
Query: 1043 catcgaaagcttgaaagagaaggggttcgctagtttttgactcgagcaagctgtgaaaca 1102
||||||||||||||||||||||| || | ||| ||||||||||||||| ||||||||||
Sbjct: 184 tatcgaaagcttgaaagagaagggatttgttag-ttttgactcgagcaacctgtgaaaca 242
Query: 1103 gaagtgttact-gtactacgtgatgttgcattgtatacatgcatcggacttcgcagttcc 1161
||||| ||||| || ||| |||| |||||| | ||||||||| |||||||| |||
Sbjct: 243 gaagtattactattagtacctgatactgcattagagacatgcatcagacttcgccattca 302
Query: 1162 caagctattttggtagctttggtctgtaagattacctaaaataaactgagccacgttgcc 1221
|||| | | ||||||||| |||||||| ||||||||||||||||| | ||||| |||
Sbjct: 303 caag--ttgctagtagctttgatctgtaaggttacctaaaataaactgtggcacgtcgcc 360
Query: 1222 acgctgtagctttt 1235
||| ||||||||||
Sbjct: 361 acgttgtagctttt 374
>gb|CL194755.1|CL194755 104_419_10941878_116_32299_055 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941878, DNA
sequence
Length = 733
Score = 254 bits (128), Expect = 2e-065
Identities = 161/172 (93%)
Strand = Plus / Plus
Query: 225 gctgacccaaagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 316 gctgacccaaagaaaacattgcacctgactgctctggatggagccaaggataggctgcac 375
Query: 285 ttatttaaagctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgac 344
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 376 ttatttaaagctagcctgctagaagagggctcttttgacgctgcagttcatggatgtgac 435
Query: 345 actgtatttcatactgcctctcccttttatcacaatgtcaaggatgctaagg 396
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 436 accgtattccatactgcctctcccttttatcacaatgtcaaggatcctaagg 487
>gb|CW217707.1|CW217707 104_651_11195794_148_37070_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195794, DNA
sequence
Length = 615
Score = 230 bits (116), Expect = 3e-058
Identities = 158/172 (91%)
Strand = Plus / Minus
Query: 225 gctgacccaaagaaaacattgcacctgactgcgttggatggtgctaaggataggctgcac 284
|||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 367 gctgacccaaagaagacattgcacctgactgctctggatggagccaaggataggctgcac 308
Query: 285 ttatttaaagctagcctgctagaagagggttctttcgatgctgcagttcatggatgcgac 344
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 307 ttatttaaagctagcctgctagaagagggctcttttgacgctgcagttcatggatgtgac 248
Query: 345 actgtatttcatactgcctctcccttttatcacaatgtcaaggatgctaagg 396
|| ||||| |||||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 247 accgtattccatactgcgtctcccttttatgacaatgtcaaggatcctaagg 196
>gb|AW284368.1|AW284368 LG1_275_F09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 206 bits (104), Expect = 4e-051
Identities = 223/259 (86%), Gaps = 4/259 (1%)
Strand = Plus / Plus
Query: 978 tcaaaggagaagataaaaagcataggcatcgagttgattccactggagacgagcgtcaag 1037
|||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||||
Sbjct: 1 tcaaaggagaagataagaagcataggcattgagttaattccagtggagacgagcgtcaag 60
Query: 1038 gagaccatcgaaagcttgaaagagaaggggttcgctagtttttgactcgagcaagctgtg 1097
||||| ||||||||||||||||||||||| || | ||| ||||||||||||||| |||||
Sbjct: 61 gagactatcgaaagcttgaaagagaagggatttgttag-ttttgactcgagcaacctgtg 119
Query: 1098 aaacagaagtgttact-gtactacgtgatgttgcattgtatacatgcatcggacttcgca 1156
|||||||||| ||||| || ||| |||| |||||| | ||||||||| ||||||||
Sbjct: 120 aaacagaagtattactattagtacctgatactgcattagagacatgcatcagacttcgcc 179
Query: 1157 gttcccaagctattttggtagctttggtctgtaagattacctaaaataaactgagccacg 1216
||| |||| | | ||||||||| |||||||| ||||||||||||||||| | ||||
Sbjct: 180 attcacaag--ttgctagtagctttgatctgtaaggttacctaaaataaactgtggcacg 237
Query: 1217 ttgccacgctgtagctttt 1235
| |||||| ||||||||||
Sbjct: 238 tcgccacgttgtagctttt 256
>gb|BZ336368.1|BZ336368 hz33f08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz33f08 5', DNA sequence
Length = 627
Score = 192 bits (97), Expect = 6e-047
Identities = 109/113 (96%)
Strand = Plus / Minus
Query: 113 ggggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgt 172
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 492 gggggcggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggatcgt 433
Query: 173 caggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccg 225
|||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 432 caggctgctcctcgaccgcggctacaccgtccgcgccaccgtgcgggacaccg 380
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 559 caggctcaggcgcaacgcaacaa 537
>gb|CW021210.1|CW021210 104_109_10409416_114_30492 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409416, DNA
sequence
Length = 716
Score = 192 bits (97), Expect = 6e-047
Identities = 109/113 (96%)
Strand = Plus / Plus
Query: 113 ggggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgt 172
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 199 gggggcggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggatcgt 258
Query: 173 caggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccg 225
|||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 259 caggctgctcctcgaccgcggctacaccgtccgcgccaccgtgcgggacaccg 311
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 132 caggctcaggcgcaacgcaacaa 154
>gb|CW217706.1|CW217706 104_651_11195794_116_37071_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195794, DNA
sequence
Length = 664
Score = 192 bits (97), Expect = 6e-047
Identities = 109/113 (96%)
Strand = Plus / Plus
Query: 113 ggggacggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgt 172
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 131 gggggcggggaaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggatcgt 190
Query: 173 caggctcctcctcgaccgcggctacaccgtccgcgccaccgtgcgagacaccg 225
|||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 191 caggctgctcctcgaccgcggctacaccgtccgcgccaccgtgcgggacaccg 243
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 caggctcaggcgcaacgcaacaa 68
|||||||||||||||||||||||
Sbjct: 64 caggctcaggcgcaacgcaacaa 86
>gb|BQ656233.1|BQ656233 pSHR0149.3 Sorghum halepense rhizome differential display library
Sorghum halepense cDNA clone pSHR0149.3, mRNA sequence
Length = 563
Score = 77.8 bits (39), Expect = 2e-012
Identities = 149/182 (81%), Gaps = 4/182 (2%)
Strand = Plus / Minus
Query: 1055 gaaagagaaggggttcgctagtttttgactcgagcaagctgtgaaacagaagtgttactg 1114
|||||||||||| || | ||||||| ||||||||||| ||||||||||||| | |||||
Sbjct: 563 gaaagagaagggatttgttagtttt-gactcgagcaacctgtgaaacagaaatattacta 505
Query: 1115 t-actacgtgatgttgcattgtatacatgcatcggacttcgcagttcccaagctattttg 1173
| | ||| |||| |||||| | ||||||||| |||||||| ||| |||| | |
Sbjct: 504 ttagtacctgatactgcattagagacatgcatcagacttcgccattcacaagttgcta-- 447
Query: 1174 gtagctttggtctgtaagattacctaaaataaactgagccacgttgccacgctgtagctt 1233
||||||||| |||||||| ||||||||||||||||| | ||||| |||||| ||| ||||
Sbjct: 446 gtagctttgatctgtaaggttacctaaaataaactgtggcacgtcgccacgttgttgctt 387
Query: 1234 tt 1235
||
Sbjct: 386 tt 385
>gb|AW284369.1|AW284369 LG1_275_F10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 329
Score = 75.8 bits (38), Expect = 9e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1174 gtagctttggtctgtaagattacctaaaataaactgagccacgttgccacgctgtagctt 1233
||||||||| |||||||| ||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 74 gtagctttgatctgtaaggttacctaaaataaactgtggcacgtcgccacgttgtagctt 133
Query: 1234 tt 1235
||
Sbjct: 134 tt 135
>gb|CW162184.1|CW162184 104_569_11150811_148_36439_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150811, DNA
sequence
Length = 789
Score = 56.0 bits (28), Expect = 9e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 179 cctcctcgaccgcggctacaccgtccgcgccaccgt 214
|||||| ||||||||||||||||||| |||||||||
Sbjct: 41 cctccttgaccgcggctacaccgtccacgccaccgt 6
>gb|CW216905.1|CW216905 104_649_11195370_116_37128_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195370, DNA
sequence
Length = 644
Score = 56.0 bits (28), Expect = 9e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 179 cctcctcgaccgcggctacaccgtccgcgccaccgt 214
|||||| ||||||||||||||||||| |||||||||
Sbjct: 355 cctccttgaccgcggctacaccgtccacgccaccgt 320
>gb|CW273767.1|CW273767 104_746_11404076_148_35369_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404076, DNA
sequence
Length = 575
Score = 56.0 bits (28), Expect = 9e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 179 cctcctcgaccgcggctacaccgtccgcgccaccgt 214
|||||| ||||||||||||||||||| |||||||||
Sbjct: 70 cctccttgaccgcggctacaccgtccacgccaccgt 35
>gb|CW295946.1|CW295946 104_777_11461224_148_35625_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461224, DNA
sequence
Length = 602
Score = 56.0 bits (28), Expect = 9e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 179 cctcctcgaccgcggctacaccgtccgcgccaccgt 214
|||||| ||||||||||||||||||| |||||||||
Sbjct: 229 cctccttgaccgcggctacaccgtccacgccaccgt 194
>gb|CB925802.1|CB925802 ABA1_23_F05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_23_F05_A012 5', mRNA sequence
Length = 645
Score = 56.0 bits (28), Expect = 9e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 179 cctcctcgaccgcggctacaccgtccgcgccaccgt 214
|||||| ||||||||||||||||||| |||||||||
Sbjct: 155 cctccttgaccgcggctacaccgtccacgccaccgt 190
>gb|CF428334.1|CF428334 PH1_14_C04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_14_C04_A002 5', mRNA sequence
Length = 659
Score = 56.0 bits (28), Expect = 9e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 179 cctcctcgaccgcggctacaccgtccgcgccaccgt 214
|||||| ||||||||||||||||||| |||||||||
Sbjct: 174 cctccttgaccgcggctacaccgtccacgccaccgt 209
>gb|CL194754.1|CL194754 104_419_10941878_114_32295_055 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941878, DNA
sequence
Length = 629
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 366 cccttttatcacaatgtcaaggatgctaagg 396
|||||||||||||||||||||||| ||||||
Sbjct: 629 cccttttatcacaatgtcaaggatcctaagg 599
>gb|CW185512.1|CW185512 104_603_11166099_148_36698_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166099, DNA
sequence
Length = 751
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 153 tacatcgcgtcctggattgtcaggctcctcctcgaccgcggctacaccgtccgcgccacc 212
|||||||| || ||| | |||| |||||||||| ||||||||||||||| | |||||||
Sbjct: 196 tacatcgcctcgtggctcgtcaagctcctcctctcccgcggctacaccgtgcacgccacc 137
Query: 213 gt 214
||
Sbjct: 136 gt 135
>gb|AW923197.1|AW923197 DG1_50_E07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 392
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 153 tacatcgcgtcctggattgtcaggctcctcctcgaccgcggctacaccgtccgcgccacc 212
|||||||| || ||| | |||| |||||||||| ||||||||||||||| | |||||||
Sbjct: 234 tacatcgcctcgtggctcgtcaagctcctcctctcccgcggctacaccgtgcacgccacc 293
Query: 213 gt 214
||
Sbjct: 294 gt 295
>gb|BE357273.1|BE357273 DG1_148_D02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 153 tacatcgcgtcctggattgtcaggctcctcctcgaccgcggctacaccgtccgcgccacc 212
|||||||| || ||| | |||| |||||||||| ||||||||||||||| | |||||||
Sbjct: 230 tacatcgcctcgtggctcgtcaagctcctcctctcccgcggctacaccgtgcacgccacc 289
Query: 213 gt 214
||
Sbjct: 290 gt 291
>gb|CD210805.1|CD210805 HS1_49_C07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_49_C07_A012 5', mRNA sequence
Length = 607
Score = 50.1 bits (25), Expect = 5e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 129 gtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctcctcgac 188
||||||||||||||||| || | ||||| ||| |||||||||| | ||||||||| |
Sbjct: 332 gtgtgcgtcaccggcgccggcggcttcatcgggtcgtggattgtcaagatcctcctcgcc 391
Query: 189 cgcggctacaccgtccg 205
||||| ||| |||||||
Sbjct: 392 cgcgggtacgccgtccg 408
>gb|CW353195.1|CW353195 fsbb001f015n13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015n13, DNA
sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.032
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgt 214
|||||||||||||||| |||||||||
Sbjct: 498 cgcggctacaccgtccacgccaccgt 523
>gb|CB925645.1|CB925645 ABA1_22_G02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_22_G02_A012 5', mRNA sequence
Length = 582
Score = 44.1 bits (22), Expect = 0.032
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgt 214
|||||||||||||||| |||||||||
Sbjct: 156 cgcggctacaccgtccacgccaccgt 181
>gb|CB926819.1|CB926819 ABA1_10_G05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_10_G05_A012 5', mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.032
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgt 214
|||||||||||||||| |||||||||
Sbjct: 214 cgcggctacaccgtccacgccaccgt 239
>gb|CD228254.1|CD228254 CCC1_6_B12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_B12_A007 5', mRNA sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.032
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgt 214
|||||||||||||||| |||||||||
Sbjct: 341 cgcggctacaccgtccacgccaccgt 366
>gb|CN145669.1|CN145669 WOUND1_34_B03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_34_B03_A002 5', mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.032
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgt 214
|||||||||||||||| |||||||||
Sbjct: 149 cgcggctacaccgtccacgccaccgt 174
>gb|CN147237.1|CN147237 WOUND1_48_B05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_B05_A002 5', mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.032
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgt 214
|||||||||||||||| |||||||||
Sbjct: 181 cgcggctacaccgtccacgccaccgt 206
>gb|CX619593.1|CX619593 GABR1_46_B10.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_B10_A002 5', mRNA sequence
Length = 277
Score = 44.1 bits (22), Expect = 0.032
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 189 cgcggctacaccgtccgcgccaccgt 214
|||||||||||||||| |||||||||
Sbjct: 181 cgcggctacaccgtccacgccaccgt 206
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 319,957
Number of Sequences: 832831
Number of extensions: 319957
Number of successful extensions: 86284
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86201
Number of HSP's gapped (non-prelim): 71
length of query: 1311
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1291
effective length of database: 474,703,049
effective search space: 612841636259
effective search space used: 612841636259
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)