BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804958.2.1
(1118 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum ... 793 0.0
gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 ... 706 0.0
gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2... 517 e-145
gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 ... 422 e-116
gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced ... 406 e-111
gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (L... 394 e-108
gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (L... 392 e-107
gb|BG933514.1|BG933514 WS1_4_C11.b1_A002 Water-stressed 1 (... 387 e-105
gb|CF770658.1|CF770658 DSBF1_9_B10.b1_A010 Drought-stressed... 349 3e-094
gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed... 309 3e-082
gb|BE595412.1|BE595412 PI1_55_A07.b1_A002 Pathogen induced ... 293 2e-077
gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sor... 280 3e-073
gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) So... 280 3e-073
gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle... 226 3e-057
gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1... 178 7e-043
gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Me... 178 7e-043
gb|BE595671.1|BE595671 PI1_55_B08.g1_A002 Pathogen induced ... 157 3e-036
gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum b... 143 4e-032
gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorgh... 123 4e-026
gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation... 123 4e-026
gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation... 123 4e-026
gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation... 117 2e-024
gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorgh... 111 1e-022
gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorgh... 111 1e-022
gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorgh... 111 1e-022
gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation... 111 1e-022
gb|BG463683.1|BG463683 EM1_50_G01.g1_A002 Embryo 1 (EM1) So... 109 6e-022
gb|CL148075.1|CL148075 104_327_10592836_148_31780_344 Sorgh... 98 2e-018
gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorgh... 98 2e-018
gb|CW396611.1|CW396611 fsbb001f085c03f0 Sorghum methylation... 98 2e-018
gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation... 98 2e-018
gb|CW482936.1|CW482936 fsbb001f244e18k0 Sorghum methylation... 98 2e-018
gb|CF428487.1|CF428487 PH1_15_D10.g1_A002 Phosphorous-defic... 98 2e-018
gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum b... 76 8e-012
gb|CW043180.1|CW043180 104_278_10507712_114_30255 Sorghum m... 70 5e-010
gb|CW140185.1|CW140185 104_530_11135648_148_34919_022 Sorgh... 68 2e-009
gb|CW243936.1|CW243936 104_704_11220319_148_37582_022 Sorgh... 68 2e-009
gb|CW358042.1|CW358042 fsbb001f024p12f0 Sorghum methylation... 68 2e-009
gb|CW358043.1|CW358043 fsbb001f024p12k0 Sorghum methylation... 68 2e-009
gb|CW362575.1|CW362575 fsbb001f033k24f0 Sorghum methylation... 68 2e-009
gb|CW392215.1|CW392215 fsbb001f078l18k0 Sorghum methylation... 68 2e-009
gb|CW433903.1|CW433903 fsbb001f149f13k0 Sorghum methylation... 68 2e-009
gb|CW449999.1|CW449999 fsbb001f188g17f0 Sorghum methylation... 68 2e-009
gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adap... 66 8e-009
gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum m... 66 8e-009
gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorgh... 66 8e-009
gb|CW099174.1|CW099174 104_466_11003407_148_34378_032 Sorgh... 66 8e-009
gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorgh... 66 8e-009
gb|BZ346558.1|BZ346558 hv20d11.b1 WGS-SbicolorF (JM107 adap... 64 3e-008
gb|BZ347654.1|BZ347654 ho31g07.g1 WGS-SbicolorF (JM107 adap... 64 3e-008
gb|CW099173.1|CW099173 104_466_11003407_116_34382_032 Sorgh... 64 3e-008
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 64 3e-008
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 64 3e-008
gb|CW205365.1|CW205365 104_633_11187029_116_36925_019 Sorgh... 62 1e-007
gb|CW249691.1|CW249691 104_711_11222983_148_35045_022 Sorgh... 56 7e-006
gb|CL185413.1|CL185413 104_399_10899512_114_32391_024 Sorgh... 54 3e-005
gb|CW163008.1|CW163008 104_570_11151237_116_36445_087 Sorgh... 52 1e-004
gb|CW163009.1|CW163009 104_570_11151237_148_36446_087 Sorgh... 52 1e-004
gb|CW182992.1|CW182992 104_598_11164376_148_36665_020 Sorgh... 52 1e-004
gb|CW301269.1|CW301269 104_785_11464112_148_36268_032 Sorgh... 52 1e-004
gb|CF428476.1|CF428476 PH1_15_D10.b1_A002 Phosphorous-defic... 52 1e-004
gb|CF485335.1|CF485335 POL1_30_H08.g1_A002 Pollen Sorghum b... 50 4e-004
gb|CW135737.1|CW135737 104_520_11118005_116_34836_023 Sorgh... 46 0.007
gb|CW178748.1|CW178748 104_592_11159733_148_36618_085 Sorgh... 46 0.007
gb|CW468737.1|CW468737 fsbb001f221b11k0 Sorghum methylation... 46 0.007
gb|BF656550.1|BF656550 FM1_51_D09.g1_A003 Floral-Induced Me... 46 0.007
gb|CW231167.1|CW231167 104_680_11210980_148_37338_010 Sorgh... 44 0.028
gb|CW447924.1|CW447924 fsbb001f181e09k0 Sorghum methylation... 44 0.028
gb|CW789353.1|CW789353 SP__Ba0057C22.r SP__Ba Sorghum propi... 44 0.028
gb|BZ342950.1|BZ342950 ho31g07.b1 WGS-SbicolorF (JM107 adap... 42 0.11
gb|CL173508.1|CL173508 104_377_10890920_116_31793_056 Sorgh... 42 0.11
gb|CW243935.1|CW243935 104_704_11220319_116_37581_022 Sorgh... 42 0.11
gb|BG463556.1|BG463556 EM1_50_A05.b1_A002 Embryo 1 (EM1) So... 42 0.11
gb|BZ347855.1|BZ347855 ho35g11.g1 WGS-SbicolorF (JM107 adap... 40 0.43
gb|BZ367983.1|BZ367983 id07f12.g1 WGS-SbicolorF (JM107 adap... 40 0.43
gb|CL153092.1|CL153092 104_337_10780465_116_31368_097 Sorgh... 40 0.43
gb|CW089672.1|CW089672 104_435_10948841_114_32596_077 Sorgh... 40 0.43
gb|CW089673.1|CW089673 104_435_10948841_116_32594_077 Sorgh... 40 0.43
gb|CW140184.1|CW140184 104_530_11135648_116_34915_022 Sorgh... 40 0.43
gb|CW178747.1|CW178747 104_592_11159733_116_36617_085 Sorgh... 40 0.43
gb|CW237860.1|CW237860 104_694_11216406_116_37394_023 Sorgh... 40 0.43
gb|CW237861.1|CW237861 104_694_11216406_148_37399_023 Sorgh... 40 0.43
gb|CW297097.1|CW297097 104_779_11461863_116_35638_062 Sorgh... 40 0.43
gb|CW297098.1|CW297098 104_779_11461863_148_35642_062 Sorgh... 40 0.43
gb|CW450000.1|CW450000 fsbb001f188g17k0 Sorghum methylation... 40 0.43
>gb|DN551899.1|DN551899 pSPR-RT-MR-H1_B06_S170 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 884
Score = 793 bits (400), Expect = 0.0
Identities = 528/571 (92%)
Strand = Plus / Minus
Query: 245 ctgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacaga 304
||||||||||||||||| ||||||| || ||||| |||||||||||| ||||| |||||
Sbjct: 876 ctgtctctggtggcatggtcagggaactactcatttctttctggaggtcaactaaacaga 817
Query: 305 aaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttc 364
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 816 aaccaaaaaggatcatattctacagggatggtgtcagtgagggacagttctaccaagttc 757
Query: 365 tgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagc 424
||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 756 tgttgcatgaacttgatgccattagaaaggcctgtgcatcattggagtccgattaccagc 697
Query: 425 ctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatc 484
|||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 696 ctccagttacgtttgttgtggtccagaagcgtcatcacactaggttgtttgctaataatc 637
Query: 485 acaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggact 544
||||||| | |||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 636 acaatgaccaacgtgctgttgataaaagtggaaacatactgcctggtactgtggtggact 577
Query: 545 cgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagg 604
| |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 576 caaagatctgccatccaactgaatttgatttctacctctgtagccatgctggcattcagg 517
Query: 605 gaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatg 664
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||
Sbjct: 516 gaacaagccgccctgcccattatcatgtcctgtgggatgagaacaaatttaccgcggatg 457
Query: 665 ggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtat 724
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 456 ggttgcaaactctcaccaacaacctgtgttacacgtatgctaggtgcactcgctcagtat 397
Query: 725 cgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatgg 784
| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 396 caatcgttcctcctgcatattatgctcacctggcagccttccgagctcgcttctacatgg 337
Query: 785 agccagatacgagtgacagtggatctatggc 815
|||||||||| | ||||||||| ||||||||
Sbjct: 336 agccagataccactgacagtgggtctatggc 306
Score = 125 bits (63), Expect = 9e-027
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 859 ggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtc 918
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 253 ggtgttggaaatgttgctgtgaggccattaccggccctcaaggaaaacgtgaagcgtgtc 194
Query: 919 atgttctactgctaagactgatgctgt 945
|||||||| |||||||| ||| |||||
Sbjct: 193 atgttctattgctaagattgacgctgt 167
>gb|BE593425.1|BE593425 WS1_97_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 706 bits (356), Expect = 0.0
Identities = 469/507 (92%)
Strand = Plus / Plus
Query: 253 ggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaaag 312
||||||||| ||||||| |||||||| |||||||||||| ||||| ||||||||||||
Sbjct: 9 ggtggcatggtcagggaacttctcatttctttctggaggtcaactaaacagaaaccaaaa 68
Query: 313 aggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtat 372
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 69 aggatcatattctacagggatggtgtcagtgagggacagttctaccaagttctgttgcat 128
Query: 373 gaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccagtt 432
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 129 gaacttgatgccattagaaaggcctgtgcatcattggagtccgattaccagcctccagtt 188
Query: 433 acttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatgat 492
|| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 189 acgtttgttgtggtccagaagcgtcatcacactaggttgtttgctaataatcacaatgac 248
Query: 493 aatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaagatc 552
| |||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct: 249 caacgtgctgttgataaaagtggaaacatactgcctggtactgtggtggactcaaagatc 308
Query: 553 tgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagc 612
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 309 tgccatccaactgaatttgatttctacctctgtagccatgctggcattcagggaacaagc 368
Query: 613 cgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaa 672
|||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct: 369 cgccctgcccattatcatgtcctgtgggatgagaacaaatttaccgcggatgggttgcaa 428
Query: 673 actctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgtt 732
||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||
Sbjct: 429 actctcaccaacaacctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgtt 488
Query: 733 cctcctgcatactatgctcacctggca 759
||||||||||| |||||||||||||||
Sbjct: 489 cctcctgcatattatgctcacctggca 515
>gb|BG103154.1|BG103154 RHIZ2_18_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 517 bits (261), Expect = e-145
Identities = 341/368 (92%)
Strand = Plus / Plus
Query: 448 cagnagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgat 507
||| ||||||||||||| |||||||||||||||||||||||||| | |||||||| |||
Sbjct: 1 cagaagcgtcatcacactaggttgtttgctaataatcacaatgaccaacgtgctgttgat 60
Query: 508 aaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgag 567
||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 61 aaaagtggaaacatactgcctggtactgtggtggactcaaagatctgccatccaactgaa 120
Query: 568 tttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattac 627
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgatttctacctctgtagccatgctggcattcagggaacaagccgccctgcccattat 180
Query: 628 catgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaac 687
||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 181 catgtcctgtgggatgagaacaaatttaccgcggatgggttgcaaactctcaccaacaac 240
Query: 688 ttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactat 747
||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||
Sbjct: 241 ctgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcctgcatattat 300
Query: 748 gctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagtgga 807
|||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 301 gctcacctggcagccttccgagctcgcttctacatggagccagataccactgacagtggg 360
Query: 808 tctatggc 815
||||||||
Sbjct: 361 tctatggc 368
Score = 125 bits (63), Expect = 9e-027
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 859 ggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtc 918
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 421 ggtgttggaaatgttgctgtgaggccattaccggccctcaaggaaaacgtgaagcgtgtc 480
Query: 919 atgttctactgctaagactgatgctgt 945
|||||||| |||||||| ||| |||||
Sbjct: 481 atgttctattgctaagattgacgctgt 507
>gb|BE593115.1|BE593115 WS1_97_F09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 422 bits (213), Expect = e-116
Identities = 273/293 (93%)
Strand = Plus / Plus
Query: 523 ctgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctg 582
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 1 ctgcctggtactgtggtggactcaaagatctgccatccaactgaatttgatttctacctc 60
Query: 583 tgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggat 642
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 61 tgtagccatgctggcattcagggaacaagccgccctgcccattatcatgtcctgtgggat 120
Query: 643 gagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtat 702
|||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 gagaacaaatttaccgcggatgggttgcaaactctcaccaacaacctgtgttacacgtat 180
Query: 703 gctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcc 762
||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 181 gctaggtgcactcgctcagtatcaatcgttcctcctgcatattatgctcacctggcagcc 240
Query: 763 ttccgagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||||||| |||||||||||||| ||||| | ||||||||| ||||||||
Sbjct: 241 ttccgagctcgcttctacatggagccggataccactgacagtgggtctatggc 293
Score = 117 bits (59), Expect = 2e-024
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 859 ggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtc 918
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 346 ggtgttggaaatgttgccgtgaggccattaccggccctcaaggaaaacgtgaagcgtgtc 405
Query: 919 atgttctactgctaagactgatgctgt 945
|||||||| |||||||| ||| |||||
Sbjct: 406 atgttctattgctaagattgacgctgt 432
>gb|BE595663.1|BE595663 PI1_55_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 406 bits (205), Expect = e-111
Identities = 268/289 (92%)
Strand = Plus / Plus
Query: 527 ctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgca 586
|||| |||||||||||||| |||||| ||||||||||||| |||||||||||||| || |
Sbjct: 1 ctggtactgtggtggactcaaagatcggccatccaactgaatttgatttctacctctgta 60
Query: 587 gccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgaga 646
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 61 gccatgctggcattcagggaacaagccgccctgcccattatcatgtcctgtgggatgaga 120
Query: 647 acaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgcta 706
|||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 121 acaaatttaccgcggatgggttgcaaactctcaccaacaacctgtgttacacgtatgcta 180
Query: 707 ggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttcc 766
||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 181 ggtgcactcgctcagtatcaatcgttcctcctgcatattatgctcacctggcagccttcc 240
Query: 767 gagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
||||||| |||||||||||||| ||||| | ||||||||| ||||||||
Sbjct: 241 gagctcgcttctacatggagccggataccactgacagtgggtctatggc 289
Score = 85.7 bits (43), Expect = 8e-015
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 859 ggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagc 913
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 342 ggtgttggaaatgttgccgtgaggccattaccggccctcaaggaaaacgtgaagc 396
>gb|AW564805.1|AW564805 LG1_301_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 435
Score = 394 bits (199), Expect = e-108
Identities = 348/398 (87%)
Strand = Plus / Plus
Query: 418 taccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgct 477
||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||
Sbjct: 37 taccagcctccagttacttttgtcgtggtccagaagcgacatcacactaggctgtttgct 96
Query: 478 aataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtg 537
||||| |||||||| | ||| | || |||| ||| || ||||||||||||||||| |||
Sbjct: 97 aataaccacaatgaccagcgtacagttgatagaagtggaaacatactgcctggcaccgtg 156
Query: 538 gtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggc 597
|| || || ||||| |||||||| || || ||||||||||||||||| |||||||| |||
Sbjct: 157 gttgattccaagatttgccatcctacggaatttgatttctacctgtgtagccatgccggc 216
Query: 598 attcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacg 657
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 217 attcagggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttaca 276
Query: 658 gctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgc 717
||||||| | |||| ||||| || |||||| |||| |||||||| ||||||||||| |||
Sbjct: 277 gctgatgagctgcagactctgacaaacaacctgtgctacacgtacgctaggtgcactcgc 336
Query: 718 tcagtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttc 777
|| || || ||||| || || |||||||||||||| |||||||||||||||||||| |||
Sbjct: 337 tccgtgtcaattgtgcccccggcatactatgctcatctggcagccttccgagctcgcttc 396
Query: 778 tacatggagccagatacgagtgacagtggatctatggc 815
||||||||||||||||| ||||||||| || |||||
Sbjct: 397 tacatggagccagatacctctgacagtgggtcaatggc 434
>gb|AW564753.1|AW564753 LG1_301_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 392 bits (198), Expect = e-107
Identities = 332/377 (88%)
Strand = Plus / Plus
Query: 418 taccagcctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgct 477
||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||
Sbjct: 37 taccagcctccagttacttttgtcgtggtccagaagcgacatcacactaggctgtttgct 96
Query: 478 aataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtg 537
||||| |||||||| | ||| | || |||| ||| || ||||||||||||||||| |||
Sbjct: 97 aataaccacaatgaccagcgtacagttgatagaagtggaaacatactgcctggcaccgtg 156
Query: 538 gtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggc 597
|| || || ||||| |||||||| || || ||||||||||||||||| |||||||| |||
Sbjct: 157 gttgattccaagatttgccatcctacggaatttgatttctacctgtgtagccatgccggc 216
Query: 598 attcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacg 657
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 217 attcagggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttaca 276
Query: 658 gctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgc 717
||||||| | |||| ||||| || |||||| |||| |||||||| ||||||||||| |||
Sbjct: 277 gctgatgagctgcagactctgacaaacaacctgtgctacacgtacgctaggtgcactcgc 336
Query: 718 tcagtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttc 777
|| || || ||||| || || |||||||||||||| |||||||||||||||||||| |||
Sbjct: 337 tccgtgtcaattgtgcccccggcatactatgctcatctggcagccttccgagctcgcttc 396
Query: 778 tacatggagccagatac 794
|||||||||||||||||
Sbjct: 397 tacatggagccagatac 413
>gb|BG933514.1|BG933514 WS1_4_C11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 387 bits (195), Expect = e-105
Identities = 268/295 (90%)
Strand = Plus / Plus
Query: 55 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 273
Query: 115 attgcagctgtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtg 174
||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct: 274 attgcagctgttgttgcttctcaagactggcctgaggttaccaagtatgcaggattagtg 333
Query: 175 agtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatccc 234
||||||||| ||||||| ||||||||||||||||||| |||| |||||||||
Sbjct: 334 agtgctcaaacccatcgccaagaattgatacaggatcttttcaaagtatatcaagatccc 393
Query: 235 gaaagggggactgtctctggtggcatgatcagggagcttctcatatctttctggagggca 294
||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||| ||
Sbjct: 394 caaaggggatctgtctctggtggcatggtcagggaacttctcatttctttctggaggtca 453
Query: 295 actggacagaaaccaaagaggatcatattctacagggatggcgtcagtgagggac 349
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 454 actaaacagaaaccaaaaaggatcatattctacagggatggtgtcagtgagggac 508
>gb|CF770658.1|CF770658 DSBF1_9_B10.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_B10_A010 5', mRNA sequence
Length = 578
Score = 349 bits (176), Expect = 3e-094
Identities = 246/272 (90%)
Strand = Plus / Plus
Query: 55 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 366
Query: 115 attgcagctgtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtg 174
||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct: 367 attgcagctgttgttgcttctcaagactggcctgaggttaccaagtatgcaggattagtg 426
Query: 175 agtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatccc 234
||||||||| ||||||| ||||||||||||||||||| |||| |||||||||
Sbjct: 427 agtgctcaaacccatcgccaagaattgatacaggatcttttcaaagtatatcaagatccc 486
Query: 235 gaaagggggactgtctctggtggcatgatcagggagcttctcatatctttctggagggca 294
||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||| ||
Sbjct: 487 caaaggggatctgtctctggtggcatggtcagggaacttctcatttctttctggaggtca 546
Query: 295 actggacagaaaccaaagaggatcatattcta 326
||| |||||||||||| ||||||||||||||
Sbjct: 547 actaaacagaaaccaaaaaggatcatattcta 578
>gb|CF770746.1|CF770746 DSBF1_9_B10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_B10_A010 3', mRNA sequence
Length = 548
Score = 309 bits (156), Expect = 3e-082
Identities = 204/220 (92%)
Strand = Plus / Plus
Query: 596 gcattcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaacttta 655
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1 gcattcagggaacaagccgccctgcccattatcatgtcctgtgggatgagaacaaattta 60
Query: 656 cggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacac 715
| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 61 ccgcggatgggttgcaaactctcaccaacaacctgtgttacacgtatgctaggtgcactc 120
Query: 716 gctcagtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggt 775
|||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 121 gctcagtatcaatcgttcctcctgcatattatgctcacctggcagccttccgagctcgct 180
Query: 776 tctacatggagccagatacgagtgacagtggatctatggc 815
| ||||||||||| ||||| | ||||||||| ||||||||
Sbjct: 181 tttacatggagccggataccactgacagtgggtctatggc 220
Score = 109 bits (55), Expect = 6e-022
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 859 ggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtc 918
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 274 ggtgttggaaatgttgccgtgaggccattaccggccctcaaggaaaacgtgaagcgtgtc 333
Query: 919 atgttctactgctaagactgatgctgt 945
||||| || |||||||| ||| |||||
Sbjct: 334 atgttttattgctaagattgacgctgt 360
>gb|BE595412.1|BE595412 PI1_55_A07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 502
Score = 293 bits (148), Expect = 2e-077
Identities = 203/224 (90%)
Strand = Plus / Plus
Query: 55 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 actattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttcc 337
Query: 115 attgcagctgtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtg 174
||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct: 338 attgcagctgttgttgcttctcaagactggcctgaggttaccaagtatgcaggattagtg 397
Query: 175 agtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatccc 234
||||||||| ||||||| ||||||||||||||||||| |||| |||||||||
Sbjct: 398 agtgctcaaacccatcgccaagaattgatacaggatcttttcaaagtatatcaagatccc 457
Query: 235 gaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 458 caaaggggatctgtctctggtggcatggtcagggaacttctcat 501
>gb|BF177091.1|BF177091 EM1_3_E09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 280 bits (141), Expect = 3e-073
Identities = 237/269 (88%)
Strand = Plus / Plus
Query: 547 aagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcaggga 606
||||| |||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 3 aagatttgccatcctacggaatttgatttctacctgtgtagccatgccggcattcaggga 62
Query: 607 acaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatggg 666
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 63 acaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctgatgag 122
Query: 667 ttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcg 726
|||| ||||| || |||||| |||| |||||||| ||||||||||| ||||| || ||
Sbjct: 123 ctgcagactctgacaaacaacctgtgctacacgtacgctaggtgcactcgctccgtgtca 182
Query: 727 attgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggag 786
||||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 183 attgtgcccccggcatactatgctcatctggcagccttccgagctcgcttctacatggag 242
Query: 787 ccagatacgagtgacagtggatctatggc 815
|||||||| ||||||||| || |||||
Sbjct: 243 ccagatacctctgacagtgggtcaatggc 271
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 324 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 383
Query: 925 tactgct 931
|||||||
Sbjct: 384 tactgct 390
>gb|BG463628.1|BG463628 EM1_50_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 280 bits (141), Expect = 3e-073
Identities = 237/269 (88%)
Strand = Plus / Plus
Query: 547 aagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcaggga 606
||||| |||||||| || || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 13 aagatttgccatcctacggaatttgatttctacctgtgtagccatgccggcattcaggga 72
Query: 607 acaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatggg 666
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| |
Sbjct: 73 acaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctgatgag 132
Query: 667 ttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcg 726
|||| ||||| || |||||| |||| |||||||| ||||||||||| ||||| || ||
Sbjct: 133 ctgcagactctgacaaacaacctgtgctacacgtacgctaggtgcactcgctccgtgtca 192
Query: 727 attgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggag 786
||||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 193 attgtgcccccggcatactatgctcatctggcagccttccgagctcgcttctacatggag 252
Query: 787 ccagatacgagtgacagtggatctatggc 815
|||||||| ||||||||| || |||||
Sbjct: 253 ccagatacctctgacagtgggtcaatggc 281
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 334 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 393
Query: 925 tactgct 931
|||||||
Sbjct: 394 tactgct 400
>gb|BI211673.1|BI211673 IP1_60_D12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 226 bits (114), Expect = 3e-057
Identities = 160/174 (91%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 643 gagaacaactttacggctgatgggttgcaaact-ctcaccaacaacttgtgttacacgta 701
|||||||| ||||| || ||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 1 gagaacaaatttaccgcggatgggttgcaaacttctcaccaacaacctgtgttacacgta 60
Query: 702 tgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagc 761
|||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 61 tgctaggtgcactcgctcagtatcaatcgttcctcctgcatattatgctcacctggcagc 120
Query: 762 cttccgagctcggttctacatggagccagatacgagtgacagtggatctatggc 815
|||||||||||| |||||||||||||| ||||| | ||||||||| ||||||||
Sbjct: 121 cttccgagctcgcttctacatggagccggataccactgacagtgggtctatggc 174
Score = 117 bits (59), Expect = 2e-024
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 859 ggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtc 918
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 227 ggtgttggaaatgttgccgtgaggccattaccggccctcaaggaaaacgtgaagcgtgtc 286
Query: 919 atgttctactgctaagactgatgctgt 945
|||||||| |||||||| ||| |||||
Sbjct: 287 atgttctattgctaagattgacgctgt 313
>gb|BE359363.1|BE359363 DG1_40_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 178 bits (90), Expect = 7e-043
Identities = 249/302 (82%)
Strand = Plus / Plus
Query: 517 aacatactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttc 576
|||||||| || || ||||| || || ||||||||||| ||||| ||||| ||||| |||
Sbjct: 37 aacatactcccaggtactgttgtagattcgaagatctgtcatcctactgaatttgacttc 96
Query: 577 tacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctg 636
||| |||| ||||||||||||||| |||| || ||||| || || ||||| ||||| ||
Sbjct: 97 tacttgtgtagccatgctggcattaagggcactagccgtccagctcattatcatgtcttg 156
Query: 637 tgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttac 696
|||||||| |||||||| | ||||| | |||||| ||||| || |||||| | ||||||
Sbjct: 157 tgggatgaaaacaacttctctgctgacgagttgcagactcttacaaacaacctctgttac 216
Query: 697 acgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctg 756
|| ||||| |||||||| ||||| |||||||| ||||| || || || ||||||||||||
Sbjct: 217 acttatgcaaggtgcacccgctctgtatcgatcgttccaccagcgtattatgctcacctg 276
Query: 757 gcagccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggca 816
|| |||||| | ||||| || |||||||| ||||| || |||||||||||| |||||
Sbjct: 277 gctgccttcagggctcgtttttacatggaaccagagacttctgacagtggatcggtggca 336
Query: 817 ag 818
||
Sbjct: 337 ag 338
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 898 aaggaaaacgtgaagcgggtcatgttctactgct 931
||||| ||||| ||| ||||||||||||||||||
Sbjct: 424 aaggataacgtaaagagggtcatgttctactgct 457
>gb|BF587838.1|BF587838 FM1_33_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 437
Score = 178 bits (90), Expect = 7e-043
Identities = 249/302 (82%)
Strand = Plus / Plus
Query: 517 aacatactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttc 576
|||||||| || || ||||| || || ||||||||||| ||||| ||||| ||||| |||
Sbjct: 30 aacatactcccaggtactgttgtagattcgaagatctgtcatcctactgaatttgacttc 89
Query: 577 tacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctg 636
||| |||| ||||||||||||||| |||| || ||||| || || ||||| ||||| ||
Sbjct: 90 tacttgtgtagccatgctggcattaagggcactagccgtccagctcattatcatgtcttg 149
Query: 637 tgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttac 696
|||||||| |||||||| | ||||| | |||||| ||||| || |||||| | ||||||
Sbjct: 150 tgggatgaaaacaacttctctgctgacgagttgcagactcttacaaacaacctctgttac 209
Query: 697 acgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctg 756
|| ||||| |||||||| ||||| |||||||| ||||| || || || ||||||||||||
Sbjct: 210 acttatgcaaggtgcacccgctctgtatcgatcgttccaccagcgtattatgctcacctg 269
Query: 757 gcagccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggca 816
|| |||||| | ||||| || |||||||| ||||| || |||||||||||| |||||
Sbjct: 270 gctgccttcagggctcgtttttacatggaaccagagacttctgacagtggatcggtggca 329
Query: 817 ag 818
||
Sbjct: 330 ag 331
>gb|BE595671.1|BE595671 PI1_55_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 232
Score = 157 bits (79), Expect = 3e-036
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 689 tgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatg 748
||||||||||||||||||||||||| ||||||||||| || ||||||| |||||| ||||
Sbjct: 9 tgtgttacacgtatgctaggtgcactcgctcagtatcaatcgttcctcgtgcatattatg 68
Query: 749 ctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagtggat 808
||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||| |
Sbjct: 69 ctcacctggcagccttccgagctcgcttctacatggagccggatgccgctgacagtgggt 128
Query: 809 ctatggc 815
|||||||
Sbjct: 129 ctatggc 135
Score = 65.9 bits (33), Expect = 8e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 859 ggtgttgggaatgttgctgtgaggccattacctgccctcaaggaa 903
|||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 188 ggtgttggaaatgttgccgtgaggccattaccggccctcaaggaa 232
>gb|CF488341.1|CF488341 POL1_49_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_G04_A002 3', mRNA sequence
Length = 665
Score = 143 bits (72), Expect = 4e-032
Identities = 186/224 (83%)
Strand = Plus / Plus
Query: 565 gagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccat 624
|||||||| |||| ||||||||||||||||||||| |||| || ||||| ||||| ||
Sbjct: 2 gagtttgacttcttcctgtgcagccatgctggcatcaagggcacgagccgtcctgctcac 61
Query: 625 taccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaac 684
|||||||| |||||||||| |||||||| || ||||||| ||||| || || |||||
Sbjct: 62 taccatgtcttgtgggatgaaaacaacttcacagctgatgcattgcagacccttaccaat 121
Query: 685 aacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatac 744
||| | || ||||| || || ||||||||||| || ||||| ||||| || || ||||||
Sbjct: 122 aacctttgctacacttacgcgaggtgcacacgttctgtatccattgtcccaccagcatac 181
Query: 745 tatgctcacctggcagccttccgagctcggttctacatggagcc 788
|| ||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 182 tacgctcatctagcagcattccgcgcccggttctacatggagcc 225
>gb|CW231166.1|CW231166 104_680_11210980_116_37342_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210980, DNA
sequence
Length = 712
Score = 123 bits (62), Expect = 4e-026
Identities = 143/170 (84%)
Strand = Plus / Plus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| |||||||||||||||||||| || || |||||||| |||| |||||||||||||
Sbjct: 40 actgttgtggactcgaagatctgccaccctacagagtttgacttcttcctgtgcagccat 99
Query: 592 gctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaac 651
|||||||| |||| || ||||| ||||| || |||||||| |||||||||| ||||||
Sbjct: 100 gctggcatcaagggcacgagccgtcctgctcactaccatgtcttgtgggatgaaaacaac 159
Query: 652 tttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgta 701
|| || ||||||| ||||| || || ||||| ||| | || ||||||||
Sbjct: 160 ttcacagctgatgcattgcagacccttaccaataacctttgctacacgta 209
Score = 44.1 bits (22), Expect = 0.028
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagcc 788
|||||||| ||||| || || || ||||| || |||||||||||||||||
Sbjct: 444 gcatactacgctcatctagctgcattccgcgcccggttctacatggagcc 493
>gb|CW410447.1|CW410447 fsbb001f105d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 777
Score = 123 bits (62), Expect = 4e-026
Identities = 143/170 (84%)
Strand = Plus / Plus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| |||||||||||||||||||| || || |||||||| |||| |||||||||||||
Sbjct: 573 actgttgtggactcgaagatctgccaccctacagagtttgacttcttcctgtgcagccat 632
Query: 592 gctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaac 651
|||||||| |||| || ||||| ||||| || |||||||| |||||||||| ||||||
Sbjct: 633 gctggcatcaagggcacgagccgtcctgctcactaccatgtcttgtgggatgaaaacaac 692
Query: 652 tttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgta 701
|| || ||||||| ||||| || || ||||| ||| | || ||||||||
Sbjct: 693 ttcacagctgatgcattgcagacccttaccaataacctttgctacacgta 742
Score = 40.1 bits (20), Expect = 0.43
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 326 acagggatggcgtcagtgagggacaattctaccaagttct 365
|||||||||| || ||||| || || ||||||||||||||
Sbjct: 166 acagggatggtgtgagtgaagggcagttctaccaagttct 205
>gb|CW410448.1|CW410448 fsbb001f105d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105d07, DNA
sequence
Length = 826
Score = 123 bits (62), Expect = 4e-026
Identities = 143/170 (84%)
Strand = Plus / Minus
Query: 532 actgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccat 591
||||| |||||||||||||||||||| || || |||||||| |||| |||||||||||||
Sbjct: 338 actgttgtggactcgaagatctgccaccctacagagtttgacttcttcctgtgcagccat 279
Query: 592 gctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaac 651
|||||||| |||| || ||||| ||||| || |||||||| |||||||||| ||||||
Sbjct: 278 gctggcatcaagggcacgagccgtcctgctcactaccatgtcttgtgggatgaaaacaac 219
Query: 652 tttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgta 701
|| || ||||||| ||||| || || ||||| ||| | || ||||||||
Sbjct: 218 ttcacagctgatgcattgcagacccttaccaataacctttgctacacgta 169
Score = 40.1 bits (20), Expect = 0.43
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 326 acagggatggcgtcagtgagggacaattctaccaagttct 365
|||||||||| || ||||| || || ||||||||||||||
Sbjct: 745 acagggatggtgtgagtgaagggcagttctaccaagttct 706
>gb|CW460238.1|CW460238 fsbb001f207f22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207f22, DNA
sequence
Length = 371
Score = 117 bits (59), Expect = 2e-024
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 732 tcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 242 tcctcctgcatattatgctcacctggcagccttccgagctcgcttctacatggagccgga 301
Query: 792 tacgagtgacagtggatctatgg 814
||| | ||||||||| |||||||
Sbjct: 302 taccactgacagtgggtctatgg 324
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 699 gtatgctaggtgcacacgctcagtatc 725
||||||||||||||| |||||||||||
Sbjct: 88 gtatgctaggtgcactcgctcagtatc 114
>gb|CL148074.1|CL148074 104_327_10592836_116_31781_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 711
Score = 111 bits (56), Expect = 1e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 314 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 373
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
||| | |||| ||||| || |||||| |||| ||||||||
Sbjct: 374 atgagctgcagactctgacaaacaacctgtgctacacgta 413
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 633 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 692
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 693 gacagtgggtcaatggc 709
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| || || ||||||||||||||||| |||
Sbjct: 161 ggcaccgtggttgattccaagatttgccatcctacggaatttgatttctacctgtgtagc 220
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 221 catgccggcattcagg 236
Score = 42.1 bits (21), Expect = 0.11
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 470 tgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctg 529
||||||||||||| |||||||| | ||| | || |||| ||| || |||||||||||||
Sbjct: 9 tgtttgctaataaccacaatgaccagcgtacagttgatagaagtggaaacatactgcctg 68
Query: 530 g 530
|
Sbjct: 69 g 69
>gb|CW157762.1|CW157762 104_561_11147696_148_36393_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147696, DNA
sequence
Length = 711
Score = 111 bits (56), Expect = 1e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 171 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 230
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
||| | |||| ||||| || |||||| |||| ||||||||
Sbjct: 231 atgagctgcagactctgacaaacaacctgtgctacacgta 270
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 490 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 549
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 550 gacagtgggtcaatggc 566
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| || || ||||||||||||||||| |||
Sbjct: 18 ggcaccgtggttgattccaagatttgccatcctacggaatttgatttctacctgtgtagc 77
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 78 catgccggcattcagg 93
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || ||||| |||||||||||||| ||||||||
Sbjct: 619 gggagtgttgcggtcaggcccctacccgctctcaaagaaaacgtgaagcgtgtcatgttt 678
Query: 925 tactgct 931
|||||||
Sbjct: 679 tactgct 685
>gb|CW330844.1|CW330844 104_827_11480592_116_36010_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 739
Score = 111 bits (56), Expect = 1e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 211 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 270
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
||| | |||| ||||| || |||||| |||| ||||||||
Sbjct: 271 atgagctgcagactctgacaaacaacctgtgctacacgta 310
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 530 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 589
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 590 gacagtgggtcaatggc 606
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 529 ggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagc 588
||||| ||||| || || ||||| |||||||| || || ||||||||||||||||| |||
Sbjct: 58 ggcaccgtggttgattccaagatttgccatcctacggaatttgatttctacctgtgtagc 117
Query: 589 catgctggcattcagg 604
||||| ||||||||||
Sbjct: 118 catgccggcattcagg 133
Score = 46.1 bits (23), Expect = 0.007
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || ||||||||||||||| |||| ||||||||
Sbjct: 659 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtg-agcgtgtcatgttt 717
Query: 925 tactgct 931
|||||||
Sbjct: 718 tactgct 724
>gb|CW482935.1|CW482935 fsbb001f244e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 758
Score = 111 bits (56), Expect = 1e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 602 agggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctg 661
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 6 agggaacaagccgccctgctcattaccatgtcctgtgggatgagaacaagtttacagctg 65
Query: 662 atgggttgcaaactctcaccaacaacttgtgttacacgta 701
||| | |||| ||||| || |||||| |||| ||||||||
Sbjct: 66 atgagctgcagactctgacaaacaacctgtgctacacgta 105
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 325 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 384
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 385 gacagtgggtcaatggc 401
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 454 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 513
Query: 925 tactgct 931
|||||||
Sbjct: 514 tactgct 520
>gb|BG463683.1|BG463683 EM1_50_G01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 316
Score = 109 bits (55), Expect = 6e-022
Identities = 109/127 (85%)
Strand = Plus / Plus
Query: 689 tgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatg 748
|||| |||||||| ||||||||||| ||||| || || ||||| || || ||||||||||
Sbjct: 3 tgtgctacacgtacgctaggtgcactcgctccgtgtcaattgtgcccccggcatactatg 62
Query: 749 ctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagtggat 808
|||| ||||||||||||||||||| || ||||||||||||||||| ||||||||| |
Sbjct: 63 ctcatatggcagccttccgagctcgcttatacatggagccagatacctctgacagtgggt 122
Query: 809 ctatggc 815
| |||||
Sbjct: 123 caatggc 129
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 182 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 241
Query: 925 tactgct 931
|||||||
Sbjct: 242 tactgct 248
>gb|CL148075.1|CL148075 104_327_10592836_148_31780_344 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592836, DNA
sequence
Length = 734
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 508 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 449
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 448 gacagtgggtcaatggc 432
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 379 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 320
Query: 925 tactgct 931
|||||||
Sbjct: 319 tactgct 313
>gb|CW330845.1|CW330845 104_827_11480592_148_36009_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480592, DNA
sequence
Length = 727
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 444 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 385
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 384 gacagtgggtcaatggc 368
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 315 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 256
Query: 925 tactgct 931
|||||||
Sbjct: 255 tactgct 249
Score = 56.0 bits (28), Expect = 7e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 638 gggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttaca 697
||||||||||||| ||||| ||||||| | |||| ||||| || |||||| |||| ||||
Sbjct: 727 gggatgagaacaagtttacagctgatgagctgcagactctgacaaacaacctgtgctaca 668
Query: 698 cgta 701
||||
Sbjct: 667 cgta 664
>gb|CW396611.1|CW396611 fsbb001f085c03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 743
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 627 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 568
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 567 gacagtgggtcaatggc 551
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 498 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 439
Query: 925 tactgct 931
|||||||
Sbjct: 438 tactgct 432
>gb|CW396612.1|CW396612 fsbb001f085c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085c03, DNA
sequence
Length = 752
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 302 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 361
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 362 gacagtgggtcaatggc 378
Score = 79.8 bits (40), Expect = 5e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 622 cattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcacc 681
||||||||||| ||||||||||||||||| ||||| ||||||| | |||| ||||| ||
Sbjct: 3 cattaccatgtcctgtgggatgagaacaagtttacagctgatgagctgcagactctgaca 62
Query: 682 aacaacttgtgttacacgta 701
|||||| |||| ||||||||
Sbjct: 63 aacaacctgtgctacacgta 82
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 431 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 490
Query: 925 tactgct 931
|||||||
Sbjct: 491 tactgct 497
>gb|CW482936.1|CW482936 fsbb001f244e18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244e18, DNA
sequence
Length = 699
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 739 gcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagt 798
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 635 gcatactatgctcatctggcagccttccgagctcgcttctacatggagccagatacctct 576
Query: 799 gacagtggatctatggc 815
|||||||| || |||||
Sbjct: 575 gacagtgggtcaatggc 559
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||| |||||| || ||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 506 gggagtgttgcggtcaggcccctacccgctctcaaggaaaacgtgaagcgtgtcatgttt 447
Query: 925 tactgct 931
|||||||
Sbjct: 446 tactgct 440
>gb|CF428487.1|CF428487 PH1_15_D10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_D10_A002 5', mRNA sequence
Length = 509
Score = 97.6 bits (49), Expect = 2e-018
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 517 aacatactgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttc 576
|||||||| || || ||||| || || ||||||||||| ||||| ||||| ||||| |||
Sbjct: 354 aacatactcccaggtactgttgtagattcgaagatctgtcatcctactgaatttgacttc 413
Query: 577 tacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctg 636
||| |||| ||||||||||||||| |||| || ||||| || || ||||| ||||| ||
Sbjct: 414 tacttgtgtagccatgctggcattaagggcactagccgtccagctcattatcatgtcttg 473
Query: 637 tgggatgagaacaactt 653
|||||||| ||||||||
Sbjct: 474 tgggatgaaaacaactt 490
Score = 60.0 bits (30), Expect = 5e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 329 gggatggcgtcagtgagggacaattctaccaagttctgttgtatga 374
||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct: 166 gggatggtgtcagtgaaggacaattttatcaagttctgttgtatga 211
>gb|CF485254.1|CF485254 POL1_30_H08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H08_A002 3', mRNA sequence
Length = 573
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 559 ccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccct 618
||||| || |||||||||| |||||||||||||||||| || ||||||||||||| |||
Sbjct: 1 ccaacagaatttgatttcttcctgtgcagccatgctggtatcaagggaacaagccgtcct 60
Query: 619 gcccattaccatgt 632
| |||||||||||
Sbjct: 61 acgcattaccatgt 74
>gb|CW043180.1|CW043180 104_278_10507712_114_30255 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507712, DNA
sequence
Length = 281
Score = 69.9 bits (35), Expect = 5e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 264 cagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatatt 323
|||||| |||||||| |||||| |||||||||||||||||| || | |||||||||||
Sbjct: 101 cagggaacttctcatttctttcaagagggcaactggacagaagccccaaaggatcatatt 160
Query: 324 ctacagg 330
|||||||
Sbjct: 161 ctacagg 167
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 330 ggatggcgtcagtgagggacaattctaccaagttctgttgtatgaac 376
|||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 235 ggatggtgtcagtgagggacagttctatcaagtattgttgtatgaac 281
>gb|CW140185.1|CW140185 104_530_11135648_148_34919_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135648, DNA
sequence
Length = 680
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 224 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 283
Query: 124 gt 125
||
Sbjct: 284 gt 285
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 136 caagactggcctgaggttacaaagtatgcagg 167
||||| ||||||||||| ||||||||||||||
Sbjct: 380 caagattggcctgaggtgacaaagtatgcagg 411
>gb|CW243936.1|CW243936 104_704_11220319_148_37582_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220319, DNA
sequence
Length = 689
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 120 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 61
Query: 124 gt 125
||
Sbjct: 60 gt 59
>gb|CW358042.1|CW358042 fsbb001f024p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024p12, DNA
sequence
Length = 782
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 146 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 87
Query: 124 gt 125
||
Sbjct: 86 gt 85
>gb|CW358043.1|CW358043 fsbb001f024p12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024p12, DNA
sequence
Length = 774
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 648 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 707
Query: 124 gt 125
||
Sbjct: 708 gt 709
>gb|CW362575.1|CW362575 fsbb001f033k24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k24, DNA
sequence
Length = 620
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 387 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 328
Query: 124 gt 125
||
Sbjct: 327 gt 326
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 136 caagactggcctgaggttacaaagtatgcagg 167
||||| ||||||||||| ||||||||||||||
Sbjct: 231 caagattggcctgaggtgacaaagtatgcagg 200
>gb|CW392215.1|CW392215 fsbb001f078l18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078l18, DNA
sequence
Length = 736
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 222 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 163
Query: 124 gt 125
||
Sbjct: 162 gt 161
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 136 caagactggcctgaggttacaaagtatgcagg 167
||||| ||||||||||| ||||||||||||||
Sbjct: 66 caagattggcctgaggtgacaaagtatgcagg 35
>gb|CW433903.1|CW433903 fsbb001f149f13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149f13, DNA
sequence
Length = 802
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 197 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 138
Query: 124 gt 125
||
Sbjct: 137 gt 136
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 136 caagactggcctgaggttacaaagtatgcagg 167
||||| ||||||||||| ||||||||||||||
Sbjct: 41 caagattggcctgaggtgacaaagtatgcagg 10
>gb|CW449999.1|CW449999 fsbb001f188g17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188g17, DNA
sequence
Length = 628
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
||||||||||||||||||||||| |||||||| |||||| || ||||||||||| |||
Sbjct: 286 tttggtgctgatgtgacccatcctcatcctggtgaagatagcagcccttccattgctgct 345
Query: 124 gt 125
||
Sbjct: 346 gt 347
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 136 caagactggcctgaggttacaaagtatgcagg 167
||||| ||||||||||| ||||||||||||||
Sbjct: 442 caagattggcctgaggtgacaaagtatgcagg 473
>gb|BZ366524.1|BZ366524 ic97f02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic97f02 5', DNA sequence
Length = 722
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 548 agatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagg 604
|||| |||||||| |||||||||||||||||| |||| || |||||||| |||||||
Sbjct: 639 agatttgccatcctactgagtttgatttctacttgtgtagtcatgctggtattcagg 583
>gb|CW030108.1|CW030108 104_258_10500065_114_30403 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500065, DNA
sequence
Length = 840
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 548 agatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagg 604
|||| |||||||| |||||||||||||||||| |||| || |||||||| |||||||
Sbjct: 236 agatttgccatcctactgagtttgatttctacttgtgtagtcatgctggtattcagg 180
>gb|CW089146.1|CW089146 104_434_10948530_115_32585_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948530, DNA
sequence
Length = 742
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 548 agatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagg 604
|||| |||||||| |||||||||||||||||| |||| || |||||||| |||||||
Sbjct: 318 agatttgccatcctactgagtttgatttctacttgtgtagtcatgctggtattcagg 374
>gb|CW099174.1|CW099174 104_466_11003407_148_34378_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003407, DNA
sequence
Length = 711
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 544 tcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
||||||||||| ||||| ||||| ||||| |||||| |||| |||||||||||||||
Sbjct: 306 tcgaagatctgtcatcctactgaatttgacttctacttgtgtagccatgctggcatt 250
Score = 48.1 bits (24), Expect = 0.002
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 622 cattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcacc 681
||||| ||||| |||||||||| |||||||| | ||||| | |||||| ||||| ||
Sbjct: 135 cattatcatgtcttgtgggatgaaaacaacttctctgctgacgagttgcagactcttaca 76
Query: 682 aacaacttgtgttacacgta 701
|||||| | |||||||||||
Sbjct: 75 aacaacctctgttacacgta 56
>gb|CW182991.1|CW182991 104_598_11164376_116_36666_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164376, DNA
sequence
Length = 633
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 544 tcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
||||||||||| ||||| ||||| ||||| |||||| |||| |||||||||||||||
Sbjct: 61 tcgaagatctgtcatcctactgaatttgacttctacttgtgtagccatgctggcatt 117
Score = 48.1 bits (24), Expect = 0.002
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 622 cattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcacc 681
||||| ||||| |||||||||| |||||||| | ||||| | |||||| ||||| ||
Sbjct: 232 cattatcatgtcttgtgggatgaaaacaacttctctgctgacgagttgcagactcttaca 291
Query: 682 aacaacttgtgttacacgta 701
|||||| | |||||||||||
Sbjct: 292 aacaacctctgttacacgta 311
Score = 44.1 bits (22), Expect = 0.028
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 745 tatgctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagt 804
|||||||||||||| |||||| | ||||| || |||||| | ||||| || |||||||
Sbjct: 525 tatgctcacctggctgccttcagggctcgtttttacatgaaaccagagacttctgacagt 584
Query: 805 ggatctatggcaag 818
||||| |||||||
Sbjct: 585 ggatcggtggcaag 598
>gb|BZ346558.1|BZ346558 hv20d11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv20d11 5', DNA sequence
Length = 714
Score = 63.9 bits (32), Expect = 3e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatga 374
||||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct: 318 cagggatggtgtcagtgaaggacaattttatcaagttctgttgtatga 271
Score = 40.1 bits (20), Expect = 0.43
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 136 caagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcccatcg 191
||||| ||||| ||||| ||||||||||| ||| | || |||||||||| |||||
Sbjct: 713 caagattggccagaggtgacaaagtatgctggactagtttgtgctcaagctcatcg 658
>gb|BZ347654.1|BZ347654 ho31g07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho31g07 5', DNA sequence
Length = 400
Score = 63.9 bits (32), Expect = 3e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatga 374
||||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct: 232 cagggatggtgtcagtgaaggacaattttatcaagttctgttgtatga 185
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,723
Number of Sequences: 832831
Number of extensions: 224723
Number of successful extensions: 57489
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 82
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 57268
Number of HSP's gapped (non-prelim): 220
length of query: 1118
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1098
effective length of database: 474,703,049
effective search space: 521223947802
effective search space used: 521223947802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)