BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG933529.1|BG933529 WS1_4_E04.b1_A002 Water-stressed 1 (... 460 e-128
gb|BG412467.1|BG412467 OV2_34_E11.g1_A002 Ovary 2 (OV2) Sor... 454 e-126
gb|CW319522.1|CW319522 104_812_11474531_148_35892_046 Sorgh... 394 e-108
gb|CX621309.1|CX621309 GABR1_57_H04.b1_A002 GA- or brassino... 353 1e-095
gb|CW319521.1|CW319521 104_812_11474531_116_35888_046 Sorgh... 317 7e-085
gb|BE919029.1|BE919029 FM1_3_B10.g1_A003 Floral-Induced Mer... 317 7e-085
gb|BF421657.1|BF421657 FM1_10_G10.g1_A003 Floral-Induced Me... 317 7e-085
gb|BF421749.1|BF421749 FM1_16_B07.g1_A003 Floral-Induced Me... 317 7e-085
gb|BI099615.1|BI099615 IP1_44_E03.g1_A002 Immature pannicle... 317 7e-085
gb|CD425235.1|CD425235 SA1_11_F01.b1_A002 Salicylic acid-tr... 317 7e-085
gb|CF428687.1|CF428687 PH1_17_F11.b1_A002 Phosphorous-defic... 317 7e-085
gb|CD230894.1|CD230894 SS1_20_G01.b1_A012 Salt-stressed see... 315 3e-084
gb|BG947178.1|BG947178 IP1_3_E01.g1_A002 Immature pannicle ... 309 2e-082
gb|BF585899.1|BF585899 FM1_25_H06.g1_A003 Floral-Induced Me... 307 7e-082
gb|BG051468.1|BG051468 FM1_56_H02.g1_A003 Floral-Induced Me... 305 3e-081
gb|BG948207.1|BG948207 IP1_10_F08.g1_A002 Immature pannicle... 305 3e-081
gb|CF432975.1|CF432975 NIT1_20_E12.b1_A002 Nitrogen-deficie... 305 3e-081
gb|CD461570.1|CD461570 SA1_33_E06.b1_A002 Salicylic acid-tr... 301 4e-080
gb|AW680151.1|AW680151 WS1_4_E04.g1_A002 Water-stressed 1 (... 297 7e-079
gb|AW671807.1|AW671807 LG1_351_D02.g1_A002 Light Grown 1 (L... 283 1e-074
gb|CX617979.1|CX617979 GABR1_37_B05.b1_A002 GA- or brassino... 278 6e-073
gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Me... 204 8e-051
gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Me... 204 8e-051
gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle... 204 8e-051
gb|CF757235.1|CF757235 DSAF1_15_D07.g1_A011 Drought-stresse... 196 2e-048
gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassino... 157 2e-036
gb|BG051682.1|BG051682 FM1_60_A04.g1_A003 Floral-Induced Me... 147 2e-033
gb|BF587521.1|BF587521 FM1_37_D11.g1_A003 Floral-Induced Me... 127 1e-027
gb|BG051983.1|BG051983 RHIZ2_7_D11.g1_A003 Rhizome2 (RHIZ2)... 121 9e-026
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 121 9e-026
gb|BG241543.1|BG241543 RHIZ2_51_H04.g1_A003 Rhizome2 (RHIZ2... 121 9e-026
gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stres... 113 2e-023
gb|BG241497.1|BG241497 RHIZ2_50_A08.g1_A003 Rhizome2 (RHIZ2... 111 8e-023
gb|BE126049.1|BE126049 DG1_65_G07.b1_A002 Dark Grown 1 (DG1... 103 2e-020
gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Me... 74 2e-011
gb|BM331086.1|BM331086 PIC1_69_D12.g1_A002 Pathogen-infecte... 72 7e-011
gb|BM331095.1|BM331095 PIC1_69_E12.g1_A002 Pathogen-infecte... 72 7e-011
gb|BM331336.1|BM331336 PIC1_64_G10.g1_A002 Pathogen-infecte... 68 1e-009
gb|CN152146.1|CN152146 WOUND1_80_C12.b1_A002 Wounded leaves... 68 1e-009
gb|CD423780.1|CD423780 SA1_1_G10.b1_A002 Salicylic acid-tre... 66 4e-009
gb|BG465904.1|BG465904 RHIZ2_46_A10.g1_A003 Rhizome2 (RHIZ2... 60 3e-007
gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorgh... 54 2e-005
gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation... 54 2e-005
gb|BE917989.1|BE917989 OV1_8_E09.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BF317768.1|BF317768 OV1_9_B10.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BI074880.1|BI074880 IP1_17_A09.g1_A002 Immature pannicle... 54 2e-005
gb|CF433645.1|CF433645 NIT1_28_F11.b1_A002 Nitrogen-deficie... 54 2e-005
gb|CN129665.1|CN129665 RHOH1_36_E05.g1_A002 Acid- and alkal... 54 2e-005
gb|BF481629.1|BF481629 FM1_20_D08.g1_A003 Floral-Induced Me... 52 7e-005
gb|BF585666.1|BF585666 FM1_24_B07.g1_A003 Floral-Induced Me... 52 7e-005
gb|BF586500.1|BF586500 FM1_29_A05.g1_A003 Floral-Induced Me... 52 7e-005
gb|CD213045.1|CD213045 HS1_28_B08.b1_A012 Heat-shocked seed... 52 7e-005
gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorgh... 50 3e-004
gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seed... 50 3e-004
gb|CD227257.1|CD227257 CCC1_50_D12.b1_A007 Callus culture/c... 50 3e-004
gb|DR831430.2|DR831430 MT69 Sorghum bicolor greenbug-respon... 50 3e-004
gb|CF073545.1|CF073545 FE1_10_F02.g1_A002 Iron-deficient se... 48 0.001
gb|BE355115.1|BE355115 DG1_113_C09.g1_A002 Dark Grown 1 (DG... 46 0.004
gb|BE362694.1|BE362694 DG1_88_F12.g1_A002 Dark Grown 1 (DG1... 44 0.016
gb|BE918278.1|BE918278 OV1_1_D06.g1_A002 Ovary 1 (OV1) Sorg... 44 0.016
gb|BE918322.1|BE918322 OV1_2_A10.g1_A002 Ovary 1 (OV1) Sorg... 44 0.016
gb|BF481487.1|BF481487 FM1_19_G05.g1_A003 Floral-Induced Me... 44 0.016
gb|BF655935.1|BF655935 FM1_42_G12.g1_A003 Floral-Induced Me... 44 0.016
gb|BG103120.1|BG103120 RHIZ2_18_D07.g1_A003 Rhizome2 (RHIZ2... 44 0.016
gb|BG103164.1|BG103164 RHIZ2_18_H12.g1_A003 Rhizome2 (RHIZ2... 44 0.016
gb|BG239994.1|BG239994 OV1_31_F08.g1_A002 Ovary 1 (OV1) Sor... 44 0.016
gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sor... 44 0.016
gb|CD227828.1|CD227828 CCC1_56_G02.b1_A007 Callus culture/c... 44 0.016
gb|CF072531.1|CF072531 FE1_3_B12.b1_A002 Iron-deficient see... 44 0.016
gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots ... 44 0.016
gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorgh... 42 0.065
gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (L... 42 0.065
gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced ... 42 0.065
gb|BF585894.1|BF585894 FM1_25_H01.g1_A003 Floral-Induced Me... 42 0.065
gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-tre... 42 0.065
gb|CN129574.1|CN129574 RHOH1_36_E05.b3_A002 Acid- and alkal... 42 0.065
gb|CN132797.1|CN132797 OX1_8_F12.b1_A002 Oxidatively-stress... 42 0.065
gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkal... 40 0.26
>gb|BG933529.1|BG933529 WS1_4_E04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 460 bits (232), Expect = e-128
Identities = 288/305 (94%), Gaps = 5/305 (1%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 94 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggaag 153
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 154 gcaaaacaggacaccaacaattgtcatcgtgtggtccattctgctggcttcaatcttctc 213
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 214 actcctttgggttcggattgatcctttccttgcaaaggatgatggtccacttcttgagga 273
Query: 186 gtgtggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtatga 245
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 274 gtgtggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatatgc 331
Query: 246 tt---gaagtatttttgccggcatttgtccccatatttacagtgccccctctgtaggtaa 302
|| |||||||||||||||| |||||||||||||||||| || ||||||||||| |||
Sbjct: 332 ttgaagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagataa 391
Query: 303 gagac 307
|||||
Sbjct: 392 gagac 396
>gb|BG412467.1|BG412467 OV2_34_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 671
Score = 454 bits (229), Expect = e-126
Identities = 285/302 (94%), Gaps = 5/302 (1%)
Strand = Plus / Plus
Query: 9 ctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggca 68
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 ctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggaaggca 60
Query: 69 aaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcact 128
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 61 aaacaggacaccaacaattgtcatcgtgtggtccattctgctggcttcaatcttctcact 120
Query: 129 cctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtg 188
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctttgggttcggattgatcctttccttgcaaaggatgatggtccacttcttgaggagtg 180
Query: 189 tggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtatgatt- 247
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct: 181 tggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatatgcttg 238
Query: 248 --gaagtatttttgccggcatttgtccccatatttacagtgccccctctgtaggtaagag 305
|||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||
Sbjct: 239 aagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagataagag 298
Query: 306 ac 307
||
Sbjct: 299 ac 300
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 336 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 393
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 394 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 450
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 451 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 510
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 570
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 571 caacctgcacagtatttatgta 592
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 627 ttcattacatgttcgtctatactag 651
>gb|CW319522.1|CW319522 104_812_11474531_148_35892_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474531, DNA
sequence
Length = 715
Score = 394 bits (199), Expect = e-108
Identities = 255/272 (93%), Gaps = 5/272 (1%)
Strand = Plus / Plus
Query: 39 tcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctg 98
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 1 tcccttcctcaaaggtttggttggaaggcaaaacaggacaccaacaattgtcatcgtgtg 60
Query: 99 gtccatcctgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgc 158
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gtccattctgctggcttcaatcttctcactcctttgggttcggattgatcctttccttgc 120
Query: 159 aaaggatgatggtccacttcttgaggagtgtggtttggattgcaactaggggatgtcagc 218
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 aaaggatgatggtccacttcttgaggagtgtggtttggattgcaacta--ggatgtcagc 178
Query: 219 acatcagctcccccaatcagcgtatgatt---gaagtatttttgccggcatttgtcccca 275
||||||||||||||||||||| |||| || |||||||||||||||| ||||||||||
Sbjct: 179 acatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtgtttgtcccca 238
Query: 276 tatttacagtgccccctctgtaggtaagagac 307
|||||||| || ||||||||||| ||||||||
Sbjct: 239 tatttacaatgtcccctctgtagataagagac 270
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 306 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 363
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 364 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 420
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 421 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 480
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 540
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 541 caacctgcacagtatttatgta 562
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 597 ttcattacatgttcgtctatactag 621
>gb|CX621309.1|CX621309 GABR1_57_H04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_H04_A002 3', mRNA sequence
Length = 708
Score = 353 bits (178), Expect = 1e-095
Identities = 231/247 (93%), Gaps = 5/247 (2%)
Strand = Plus / Plus
Query: 64 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 123
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 2 aggcaaaacaggacaccaacaattgtcatcgtgtggtccattctgctggcttcaatcttc 61
Query: 124 tcactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgag 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcactcctttgggttcggattgatcctttccttgcaaaggatgatggtccacttcttgag 121
Query: 184 gagtgtggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtat 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 122 gagtgtggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatat 179
Query: 244 gatt---gaagtatttttgccggcatttgtccccatatttacagtgccccctctgtaggt 300
| || |||||||||||||||| |||||||||||||||||| || ||||||||||| |
Sbjct: 180 gcttgaagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagat 239
Query: 301 aagagac 307
|||||||
Sbjct: 240 aagagac 246
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 282 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 339
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 340 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 396
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 397 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 456
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 516
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 517 caacctgcacagtatttatgta 538
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 573 ttcattacatgttcgtctatactag 597
>gb|CW319521.1|CW319521 104_812_11474531_116_35888_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474531, DNA
sequence
Length = 671
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Minus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 560 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 503
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 502 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 446
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 445 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 386
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 326
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 325 caacctgcacagtatttatgta 304
Score = 79.8 bits (40), Expect = 3e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 248 gaagtatttttgccggcatttgtccccatatttacagtgccccctctgtaggtaagagac 307
|||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 655 gaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagataagagac 596
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 269 ttcattacatgttcgtctatactag 245
>gb|BE919029.1|BE919029 FM1_3_B10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 643
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 163 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 220
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 221 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 277
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 278 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 337
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 397
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 398 caacctgcacagtatttatgta 419
Score = 145 bits (73), Expect = 6e-033
Identities = 116/129 (89%), Gaps = 5/129 (3%)
Strand = Plus / Plus
Query: 182 aggagtgtggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgt 241
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 1 aggagtgtggtttggattgcaantagg--atgtcagcacatcagctcccccaatcagcat 58
Query: 242 atgattgaag---tatttttgccggcatttgtccccatatttacagtgccccctctgtag 298
||| |||||| |||||||||||| |||||||||||||||||| || |||||||||||
Sbjct: 59 atgcttgaagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtag 118
Query: 299 gtaagagac 307
||||||||
Sbjct: 119 ataagagac 127
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 454 ttcattacatgttcgtctatactag 478
>gb|BF421657.1|BF421657 FM1_10_G10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 597
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 134 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 191
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 192 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 248
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 249 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 308
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 368
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 369 caacctgcacagtatttatgta 390
Score = 103 bits (52), Expect = 2e-020
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 213 gtcagcacatcagctcccccaatcagcgtatgattgaag---tatttttgccggcatttg 269
||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||
Sbjct: 1 gtcagcacatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtgtttg 60
Query: 270 tccccatatttacagtgccccctctgtaggtaagagac 307
|||||||||||||| || | ||||||||| ||||||||
Sbjct: 61 tccccatatttacaatgtcgcctctgtagataagagac 98
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 425 ttcattacatgttcgtctatactag 449
>gb|BF421749.1|BF421749 FM1_16_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 495
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 205 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 262
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 319
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 320 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 379
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 439
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 440 caacctgcacagtatttatgta 461
Score = 218 bits (110), Expect = 5e-055
Identities = 157/171 (91%), Gaps = 5/171 (2%)
Strand = Plus / Plus
Query: 140 ggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggatt 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggattgatcctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggatt 60
Query: 200 gcaactaggggatgtcagcacatcagctcccccaatcagcgtatgatt---gaagtattt 256
||||||| ||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct: 61 gcaacta--ggatgtcagcacatcagctcccccaatcagcatatgcttgaagaagtattt 118
Query: 257 ttgccggcatttgtccccatatttacagtgccccctctgtaggtaagagac 307
||||||| |||||||||||||||||| || | ||||||||| ||||||||
Sbjct: 119 ttgccggtgtttgtccccatatttacaatgtcgcctctgtagataagagac 169
>gb|BI099615.1|BI099615 IP1_44_E03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 140 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 197
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 198 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 254
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 255 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 314
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 374
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 375 caacctgcacagtatttatgta 396
Score = 119 bits (60), Expect = 3e-025
Identities = 92/102 (90%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 209 ggatgtcagcacatcagctcccccaatcagcgtatgattgaag---tatttttgccggca 265
||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct: 3 ggatgtcagcacatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtg 62
Query: 266 tttgtccccatatttacagtgccccctctgtaggtaagagac 307
|||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 63 tttgtccccatatttacaatgtcccctctgtagataagagac 104
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 431 ttcattacatgttcgtctatactag 455
>gb|CD425235.1|CD425235 SA1_11_F01.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_F01_A002 3', mRNA sequence
Length = 510
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 112 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 169
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 170 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 226
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 227 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 286
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 346
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 347 caacctgcacagtatttatgta 368
Score = 79.8 bits (40), Expect = 3e-013
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 248 gaagtatttttgccggcatttgtccccatatttacagtgccccctctgtaggtaagagac 307
|||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 17 gaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagataagagac 76
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 403 ttcattacatgttcgtctatactag 427
>gb|CF428687.1|CF428687 PH1_17_F11.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_17_F11_A002 3', mRNA sequence
Length = 617
Score = 317 bits (160), Expect = 7e-085
Identities = 238/262 (90%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 215 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 272
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 273 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 329
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||
Sbjct: 330 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctccc 389
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 449
Query: 559 gaacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 450 caacctgcacagtatttatgta 471
Score = 230 bits (116), Expect = 1e-058
Identities = 166/181 (91%), Gaps = 5/181 (2%)
Strand = Plus / Plus
Query: 130 ctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgt 189
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgggttcgggttgatcctttccttgcaaaggatgatggtccacttcttgaggagtgt 60
Query: 190 ggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtatgatt-- 247
||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct: 61 ggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatatgcttga 118
Query: 248 -gaagtatttttgccggcatttgtccccatatttacagtgccccctctgtaggtaagaga 306
|||||||||||||||| |||||||||||||||||| | ||||||||||| |||||||
Sbjct: 119 agaagtatttttgccggtgtttgtccccatatttacaatatcccctctgtagataagaga 178
Query: 307 c 307
|
Sbjct: 179 c 179
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 588 cattacatgttcgtctatactag 610
|||||||||||||||||||||||
Sbjct: 508 cattacatgttcgtctatactag 530
>gb|CD230894.1|CD230894 SS1_20_G01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_20_G01_A012 3', mRNA sequence
Length = 489
Score = 315 bits (159), Expect = 3e-084
Identities = 237/261 (90%), Gaps = 9/261 (3%)
Strand = Plus / Plus
Query: 324 cctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtgc 383
|||| |||||||||||| |||| ||||||| ||| |||||||||||||||| |||||||
Sbjct: 50 cctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtgc 107
Query: 384 agatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt---- 439
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 108 agttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattactt 164
Query: 440 gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctcccg 499
|||| ||||| |||||| |||||||| ||| ||||| ||||||| ||||||||||||||
Sbjct: 165 gggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctcccg 224
Query: 500 tgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagagg 559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagagc 284
Query: 560 aacctgcacagtatttatgta 580
|||||||||||||||||||||
Sbjct: 285 aacctgcacagtatttatgta 305
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 340 ttcattacatgttcgtctatactag 364
>gb|BG947178.1|BG947178 IP1_3_E01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 309 bits (156), Expect = 2e-082
Identities = 231/254 (90%), Gaps = 9/254 (3%)
Strand = Plus / Plus
Query: 331 ctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtgcagatggg 390
|||||||||| |||| ||||||| ||| |||||||||||||||| ||||||||| ||||
Sbjct: 1 ctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtgcagttggg 58
Query: 391 ccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt----gggcgca 446
||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct: 59 ccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattacttgggcaca 115
Query: 447 aaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctcccgtgtacaa 506
||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 116 aaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctcccgtgtacaa 175
Query: 507 acttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagaggaacctgc 566
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 176 acttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagagcaacctgc 235
Query: 567 acagtatttatgta 580
||||||||||||||
Sbjct: 236 acagtatttatgta 249
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 284 ttcattacatgttcgtctatactag 308
>gb|BF585899.1|BF585899 FM1_25_H06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 486
Score = 307 bits (155), Expect = 7e-082
Identities = 230/253 (90%), Gaps = 9/253 (3%)
Strand = Plus / Plus
Query: 332 taatatctgggatacactggggggaaaatggaggctgcggcaatccttgtgcagatgggc 391
||||||||| |||| ||||||| ||| |||||||||||||||| ||||||||| |||||
Sbjct: 1 taatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtgcagttgggc 58
Query: 392 cgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt----gggcgcaa 447
|||||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct: 59 cgtggaatacagcatatg---gtgtttgattgtgcagcattctttattacttgggcacaa 115
Query: 448 aactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctcccgtgtacaaa 507
|| |||||| |||||||| ||| ||||| ||||||| ||||||||||||||||||||||
Sbjct: 116 aattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctcccgtgtacaaa 175
Query: 508 cttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagaggaacctgca 567
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 176 cttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagagcaacctgca 235
Query: 568 cagtatttatgta 580
|||||||||||||
Sbjct: 236 cagtatttatgta 248
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 283 ttcattacatgttcgtctatactag 307
>gb|BG051468.1|BG051468 FM1_56_H02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 440
Score = 305 bits (154), Expect = 3e-081
Identities = 214/233 (91%), Gaps = 7/233 (3%)
Strand = Plus / Plus
Query: 352 ggggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgca 411
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1 ggggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg-- 58
Query: 412 agtgtttgattgtgcagcattctttatt----gggcgcaaaactgatcgtctgagccgag 467
||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||
Sbjct: 59 -gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaa 117
Query: 468 cagcaaggtattttgatcctgcactgctcccgtgtacaaacttggttctcaataaggcag 527
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cagtaaggtgttttgattctgcactgctcccgtgtacaaacttggttctcaataaggcag 177
Query: 528 gcaggaatgtgcatctgccagtggaacagaggaacctgcacagtatttatgta 580
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 178 gcaggaatgtgcatctgccagtggaacagagcaacctgcacagtatttatgta 230
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 265 ttcattacatgttcgtctatactag 289
>gb|BG948207.1|BG948207 IP1_10_F08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 305 bits (154), Expect = 3e-081
Identities = 214/233 (91%), Gaps = 7/233 (3%)
Strand = Plus / Plus
Query: 352 ggggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgca 411
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 10 ggggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg-- 67
Query: 412 agtgtttgattgtgcagcattctttatt----gggcgcaaaactgatcgtctgagccgag 467
||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||
Sbjct: 68 -gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaa 126
Query: 468 cagcaaggtattttgatcctgcactgctcccgtgtacaaacttggttctcaataaggcag 527
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cagtaaggtgttttgattctgcactgctcccgtgtacaaacttggttctcaataaggcag 186
Query: 528 gcaggaatgtgcatctgccagtggaacagaggaacctgcacagtatttatgta 580
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 187 gcaggaatgtgcatctgccagtggaacagagcaacctgcacagtatttatgta 239
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 274 ttcattacatgttcgtctatactag 298
>gb|CF432975.1|CF432975 NIT1_20_E12.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_20_E12_A002 3', mRNA sequence
Length = 532
Score = 305 bits (154), Expect = 3e-081
Identities = 214/233 (91%), Gaps = 7/233 (3%)
Strand = Plus / Plus
Query: 352 ggggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgca 411
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 11 ggggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg-- 68
Query: 412 agtgtttgattgtgcagcattctttatt----gggcgcaaaactgatcgtctgagccgag 467
||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||
Sbjct: 69 -gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaa 127
Query: 468 cagcaaggtattttgatcctgcactgctcccgtgtacaaacttggttctcaataaggcag 527
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cagtaaggtgttttgattctgcactgctcccgtgtacaaacttggttctcaataaggcag 187
Query: 528 gcaggaatgtgcatctgccagtggaacagaggaacctgcacagtatttatgta 580
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 188 gcaggaatgtgcatctgccagtggaacagagcaacctgcacagtatttatgta 240
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 275 ttcattacatgttcgtctatactag 299
>gb|CD461570.1|CD461570 SA1_33_E06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_33_E06_A002 3', mRNA sequence
Length = 622
Score = 301 bits (152), Expect = 4e-080
Identities = 233/258 (90%), Gaps = 9/258 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 220 acctcaacctaatatctgagatatactggggagaa--tggaggctgcggcaatgcttgtg 277
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 278 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 334
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| ||||||||||||
Sbjct: 335 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattttgcactgctccc 394
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 454
Query: 559 gaacctgcacagtattta 576
|||||||||||||||||
Sbjct: 455 caacctgcacagtattta 472
Score = 256 bits (129), Expect = 2e-066
Identities = 173/186 (93%), Gaps = 5/186 (2%)
Strand = Plus / Plus
Query: 125 cactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagg 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactcctttgggttcggattgatcctttccttgcaaaggatgatggtccacttcttgagg 60
Query: 185 agtgtggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtatg 244
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 61 agtgtggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatatg 118
Query: 245 att---gaagtatttttgccggcatttgtccccatatttacagtgccccctctgtaggta 301
|| |||||||||||||||| |||||||||||||||||| || ||||||||||| ||
Sbjct: 119 cttgaagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagata 178
Query: 302 agagac 307
||||||
Sbjct: 179 agagac 184
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 511 ttcattacatgttcgtctatactag 535
>gb|AW680151.1|AW680151 WS1_4_E04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 483
Score = 297 bits (150), Expect = 7e-079
Identities = 213/233 (91%), Gaps = 7/233 (3%)
Strand = Plus / Plus
Query: 352 ggggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgca 411
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 17 ggggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg-- 74
Query: 412 agtgtttgattgtgcagcattctttatt----gggcgcaaaactgatcgtctgagccgag 467
||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||
Sbjct: 75 -gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaa 133
Query: 468 cagcaaggtattttgatcctgcactgctcccgtgtacaaacttggttctcaataaggcag 527
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 cagtaaggtgttttgattctgcactgctcccgtgtacaaacttggttctcaataaggcag 193
Query: 528 gcaggaatgtgcatctgccagtggaacagaggaacctgcacagtatttatgta 580
||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 194 gcaggaatgtgcatctgccagtggaacagagcaacctgcccagtatttatgta 246
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 281 ttcattacatgttcgtctatactag 305
>gb|AW671807.1|AW671807 LG1_351_D02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 474
Score = 283 bits (143), Expect = 1e-074
Identities = 200/218 (91%), Gaps = 7/218 (3%)
Strand = Plus / Plus
Query: 367 tgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaagtgtttgattgtgc 426
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcggcaatgcttgtgcagttgggccgtggaatacagcatatg---gtgtttgattgtgc 57
Query: 427 agcattctttatt----gggcgcaaaactgatcgtctgagccgagcagcaaggtattttg 482
||||||||||||| |||| ||||| |||||| |||||||| ||| ||||| |||||
Sbjct: 58 agcattctttattacttgggcacaaaattgatcgggtgagccgaacagtaaggtgttttg 117
Query: 483 atcctgcactgctcccgtgtacaaacttggttctcaataaggcaggcaggaatgtgcatc 542
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 attctgcactgctcccgtgtacaaacttggttctcaataaggcaggcaggaatgtgcatc 177
Query: 543 tgccagtggaacagaggaacctgcacagtatttatgta 580
|||||||||||||||| |||||||||||||||||||||
Sbjct: 178 tgccagtggaacagagcaacctgcacagtatttatgta 215
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 250 ttcattacatgttcgtctatactag 274
>gb|CX617979.1|CX617979 GABR1_37_B05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B05_A002 3', mRNA sequence
Length = 606
Score = 278 bits (140), Expect = 6e-073
Identities = 233/262 (88%), Gaps = 9/262 (3%)
Strand = Plus / Plus
Query: 323 acctcgacctaatatctgggatacactggggggaaaatggaggctgcggcaatccttgtg 382
||||| ||||||||| || |||| ||||||| ||| |||||||||||||||| ||||||
Sbjct: 196 acctcaacctaatatttgagatatactggggagaa--tggaggctgcggcaatgcttgtg 253
Query: 383 cagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattctttatt--- 439
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 254 cagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattact 310
Query: 440 -gggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctccc 498
|||| ||||| |||||| |||||||| ||| ||||| ||||||| ||||||||||||
Sbjct: 311 tgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattttgcactgctccc 370
Query: 499 gtgtacaaacttggttctcaataaggcaggcaggaatgtgcatctgccagtggaacagag 558
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 371 gtgtacaaacttggttttcaataaggcaggcaggaatgtgcatttgccagtggaacagag 430
Query: 559 gaacctgcacagtatttatgta 580
||||||| |||||||||||||
Sbjct: 431 caacctgcccagtatttatgta 452
Score = 208 bits (105), Expect = 5e-052
Identities = 149/162 (91%), Gaps = 5/162 (3%)
Strand = Plus / Plus
Query: 149 ctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaactagg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 ctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaatta-- 58
Query: 209 ggatgtcagcacatcagctcccccaatcagcgtatgatt---gaagtatttttgccggca 265
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct: 59 ggatgtcagcacatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtg 118
Query: 266 tttgtccccatatttacagtgccccctctgtaggtaagagac 307
|||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 119 tttgtccccatatttacaatgtcccctctgtagataagagac 160
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 487 ttcattacatgttcgtctatactag 511
>gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 721
Score = 204 bits (103), Expect = 8e-051
Identities = 178/203 (87%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||||||||||||||||||||| || || |||||||| ||| ||||||||||
Sbjct: 395 cttctttgcattttgggtgattgtccatctttacccattcctcaagggtctggttgggag 454
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 455 gcagaacagaacgccaacaattgtcattgtctggtccatcctcttggcttcaatcttctc 514
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|| || ||||| ||||| || ||||||||||| |||||||||||||| || | |||||
Sbjct: 515 gctgctctgggtccggatagatcctttccttgcgaaggatgatggtcccctgttggagga 574
Query: 186 gtgtggtttggattgcaactagg 208
|| |||||||||||||||||||
Sbjct: 575 atgcggtttggattgcaactagg 597
>gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 412
Score = 204 bits (103), Expect = 8e-051
Identities = 178/203 (87%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||||||||||||||||||||| || || |||||||| ||| ||||||||||
Sbjct: 192 cttctttgcattttgggtgattgtccatctttacccattcctcaagggtctggttgggag 251
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 252 gcagaacagaacgccaacaattgtcattgtctggtccatcctcttggcttcaatcttctc 311
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|| || ||||| ||||| || ||||||||||| |||||||||||||| || | |||||
Sbjct: 312 gctgctctgggtccggatagatcctttccttgcgaaggatgatggtcccctgttggagga 371
Query: 186 gtgtggtttggattgcaactagg 208
|| |||||||||||||||||||
Sbjct: 372 atgcggtttggattgcaactagg 394
>gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 204 bits (103), Expect = 8e-051
Identities = 178/203 (87%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||||||||||||||||||||||||||| || || |||||||| ||| ||||||||||
Sbjct: 180 cttctttgcattttgggtgattgtccatctttacccattcctcaagggtctggttgggag 239
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 240 gcagaacagaacgccaacaattgtcattgtctggtccatcctcttggcttcaatcttctc 299
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
|| || ||||| ||||| || ||||||||||| |||||||||||||| || | |||||
Sbjct: 300 gctgctctgggtccggatagatcctttccttgcgaaggatgatggtcccctgttggagga 359
Query: 186 gtgtggtttggattgcaactagg 208
|| |||||||||||||||||||
Sbjct: 360 atgcggtttggattgcaactagg 382
>gb|CF757235.1|CF757235 DSAF1_15_D07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_15_D07_A011 3', mRNA sequence
Length = 393
Score = 196 bits (99), Expect = 2e-048
Identities = 174/199 (87%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
|||||||||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct: 60 tttgcattttgggtgattgtccatctttacccattcctcaagggtttggttgggaggcag 119
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
||||| || || ||||||||||| |||||||||||||| ||||||||||||| || ||
Sbjct: 120 aacagaacgccaacaattgtcattgtctggtccatcctcttggcttcaatcttttcgctg 179
Query: 130 ctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgt 189
|||||||| ||||| || |||||||||| |||||||||||||| || | ||||| ||
Sbjct: 180 ctttgggtccggatagatcctttccttgggaaggatgatggtcccctgttggaggaatgc 239
Query: 190 ggtttggattgcaactagg 208
|||||||||||||||||||
Sbjct: 240 ggtttggattgcaactagg 258
>gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B05_A002 5', mRNA sequence
Length = 728
Score = 157 bits (79), Expect = 2e-036
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 642 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggaag 701
Query: 66 gcaaaacaggacaccgacaattgtcat 92
||||||||||||||| |||||||||||
Sbjct: 702 gcaaaacaggacaccaacaattgtcat 728
>gb|BG051682.1|BG051682 FM1_60_A04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 542
Score = 147 bits (74), Expect = 2e-033
Identities = 143/166 (86%)
Strand = Plus / Plus
Query: 43 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 102
|||||||| ||| ||||||||||||| ||||| || || ||||||||||| || ||||||
Sbjct: 12 ttcctcaagggtctggttgggaggcagaacagaacgccaacaattgtcattgtgtggtcc 71
Query: 103 atcctgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaag 162
||||| |||||||||||||||| || || ||||| ||||| || ||||||||||| |||
Sbjct: 72 atcctcttggcttcaatcttctcgctgctctgggtccggatagatcctttccttgcgaag 131
Query: 163 gatgatggtccacttcttgaggagtgtggtttggattgcaactagg 208
||||||||||| || | ||||| || |||||||||||||||||||
Sbjct: 132 gatgatggtcccctgttggaggaatgcggtttggattgcaactagg 177
>gb|BF587521.1|BF587521 FM1_37_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 264
Score = 127 bits (64), Expect = 1e-027
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 513 ttctcaataaggcaggcaggaatgtgcatctgccagtggaacagaggaacctgcacagta 572
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ttctcaataaggcaggcaggaatgtgcatctgccagtggaacagagcaacctgcacagta 60
Query: 573 tttatgta 580
||||||||
Sbjct: 61 tttatgta 68
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 586 ttcattacatgttcgtctatactag 610
|||||||||||||||||||||||||
Sbjct: 103 ttcattacatgttcgtctatactag 127
>gb|BG051983.1|BG051983 RHIZ2_7_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 558
Score = 121 bits (61), Expect = 9e-026
Identities = 166/201 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || |||||||| |||||||||| || |||||||| ||| |||| || |
Sbjct: 4 cttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggtgggacg 63
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| ||| |||| ||||| || || ||||||||||||||||||||||| || ||||||||
Sbjct: 64 gcagaaccggacgccgacgatcgtgatcgtctggtccatcctgctggcctccatcttctc 123
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||||| ||||| || || ||||| |||||||| ||| ||||| || ||||| |||||
Sbjct: 124 gctcctgtgggtccgcatcgacccattccttgccaagagcgatggacctcttctggagga 183
Query: 186 gtgtggtttggattgcaacta 206
||||||| |||| ||||||||
Sbjct: 184 gtgtggtctggactgcaacta 204
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 121 bits (61), Expect = 9e-026
Identities = 166/201 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || |||||||| |||||||||| || |||||||| ||| |||| || |
Sbjct: 351 cttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggtgggacg 410
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| ||| |||| ||||| || || ||||||||||||||||||||||| || ||||||||
Sbjct: 411 gcagaaccggacgccgacgatcgtgatcgtctggtccatcctgctggcctccatcttctc 470
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||||| ||||| || || ||||| |||||||| ||| ||||| || ||||| |||||
Sbjct: 471 gctcctgtgggtccgcatcgacccattccttgccaagagcgatggacctcttctggagga 530
Query: 186 gtgtggtttggattgcaacta 206
||||||| |||| ||||||||
Sbjct: 531 gtgtggtctggactgcaacta 551
>gb|BG241543.1|BG241543 RHIZ2_51_H04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 476
Score = 121 bits (61), Expect = 9e-026
Identities = 166/201 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || |||||||| |||||||||| || |||||||| ||| |||| || |
Sbjct: 3 cttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggtgggacg 62
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| ||| |||| ||||| || || ||||||||||||||||||||||| || ||||||||
Sbjct: 63 gcagaaccggacgccgacgatcgtgatcgtctggtccatcctgctggcctccatcttctc 122
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||||| ||||| || || ||||| |||||||| ||| ||||| || ||||| |||||
Sbjct: 123 gctcctgtgggtccgcatcgacccattccttgccaagagcgatggacctcttctggagga 182
Query: 186 gtgtggtttggattgcaacta 206
||||||| |||| ||||||||
Sbjct: 183 gtgtggtctggactgcaacta 203
>gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C06_A002 3', mRNA sequence
Length = 677
Score = 113 bits (57), Expect = 2e-023
Identities = 165/201 (82%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggag 65
|||||| || || |||||||| |||||||||| || |||||||| ||| |||| || |
Sbjct: 65 cttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggtgggacg 124
Query: 66 gcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
||| ||| |||| ||||| || || ||||||||||||||||||||||| || ||||||||
Sbjct: 125 gcagaaccggacgccgacgatcgtgatcgtctggtccatcctgctggcctccatcttctc 184
Query: 126 actcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagga 185
||||| ||||| || || ||||| |||||||| ||| ||||| || |||| |||||
Sbjct: 185 gctcctgtgggtccgcatcgacccgttccttgccaagagcgatggaccttttctggagga 244
Query: 186 gtgtggtttggattgcaacta 206
||||||| |||| ||||||||
Sbjct: 245 gtgtggtctggactgcaacta 265
>gb|BG241497.1|BG241497 RHIZ2_50_A08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 111 bits (56), Expect = 8e-023
Identities = 155/188 (82%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| || |||||||| ||| |||| || |||| ||| ||||
Sbjct: 6 tgggtgatcatccatctgtacccgttcctcaagggtctggtgggacggcagaaccggacg 65
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggtt 138
||||| || || |||||||||||| |||||||||| || |||||||| ||||| |||||
Sbjct: 66 ccgacgatcgtgatcgtctggtccctcctgctggcctccatcttctcgctcctgtgggtc 125
Query: 139 cggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggat 198
|| || ||||| |||||||| ||| ||||| || ||||| |||||||||||| ||||
Sbjct: 126 cgcatcgacccattccttgccaagagcgatggacctcttctggaggagtgtggtctggac 185
Query: 199 tgcaacta 206
||||||||
Sbjct: 186 tgcaacta 193
>gb|BE126049.1|BE126049 DG1_65_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 381
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 43 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 102
|||||||| ||| |||| || |||| ||| |||| ||||| || || ||||||||||||
Sbjct: 2 ttcctcaagggtctggtgggacggcagaaccggacgccgacgatcgtgatcgtctggtcc 61
Query: 103 atcctgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaag 162
||||||||||| || |||||||| ||||| ||||| || || ||||| |||||||| |||
Sbjct: 62 atcctgctggcctccatcttctcgctcctgtgggtccgcatcgacccgttccttgccaag 121
Query: 163 gatgatggtccacttcttgaggagtgtggtttggattgcaacta 206
||||| || ||||| |||||||||||| |||| ||||||||
Sbjct: 122 agcgatggacctcttctggaggagtgtggtctggactgcaacta 165
>gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 362
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 313 cttctttgcattttgggtgattgtccatctttacccattcctcaaaggt 361
>gb|BM331086.1|BM331086 PIC1_69_D12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 598
Score = 71.9 bits (36), Expect = 7e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 133 tgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggt 192
||||| ||||| || ||||||||||| |||||||||||||| || | ||||| || |||
Sbjct: 6 tgggtccggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggt 65
Query: 193 ttggattgcaactagg 208
||||||||||||||||
Sbjct: 66 ttggattgcaactagg 81
>gb|BM331095.1|BM331095 PIC1_69_E12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 595
Score = 71.9 bits (36), Expect = 7e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 133 tgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggt 192
||||| ||||| || ||||||||||| |||||||||||||| || | ||||| || |||
Sbjct: 2 tgggtccggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggt 61
Query: 193 ttggattgcaactagg 208
||||||||||||||||
Sbjct: 62 ttggattgcaactagg 77
>gb|BM331336.1|BM331336 PIC1_64_G10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 449
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 139 cggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggat 198
||||| || ||||||||||| |||||||||||||| || | ||||| || |||||||||
Sbjct: 5 cggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggtttggat 64
Query: 199 tgcaactagg 208
||||||||||
Sbjct: 65 tgcaactagg 74
>gb|CN152146.1|CN152146 WOUND1_80_C12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_C12_A002 3', mRNA sequence
Length = 750
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 139 cggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggat 198
||||| || ||||||||||| |||||||||||||| || | ||||| || |||||||||
Sbjct: 1 cggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggtttggat 60
Query: 199 tgcaactagg 208
||||||||||
Sbjct: 61 tgcaactagg 70
>gb|CD423780.1|CD423780 SA1_1_G10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_1_G10_A002 3', mRNA sequence
Length = 708
Score = 65.9 bits (33), Expect = 4e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 148 cctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaactag 207
||||||||||| |||||||||||||| || | ||||| || ||||||||||||||||||
Sbjct: 8 cctttccttgcgaaggatgatggtcccctgttggaggaatgcggtttggattgcaactag 67
Query: 208 g 208
|
Sbjct: 68 g 68
>gb|BG465904.1|BG465904 RHIZ2_46_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 60.0 bits (30), Expect = 3e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 97 tggtccatcctgctggcttcaatcttctcactcctttgggttcggattgaccctttcctt 156
||||||||||||||||| || || || || ||||| ||||| || || ||||| ||||||
Sbjct: 1 tggtccatcctgctggcctccattttttcgctcctgtgggtccgcatcgacccattcctt 60
Query: 157 gcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaacta 206
|| ||| ||||| || || | ||||||||||||||||| ||||||||
Sbjct: 61 gccaagagcgatggaccttttttggaggagtgtggtttggactgcaacta 110
>gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 638
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 295 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 236
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 235 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 189
>gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068m13, DNA
sequence
Length = 659
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 416 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 475
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 476 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 522
>gb|BE917989.1|BE917989 OV1_8_E09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 629
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 27 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 86
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 87 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 133
>gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 631
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 261 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 320
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 321 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 367
>gb|BF317768.1|BF317768 OV1_9_B10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 612
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 2 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 61
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 62 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 108
>gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 511
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 261 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 320
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 321 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 367
>gb|BI074880.1|BI074880 IP1_17_A09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 523
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 60 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 119
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 120 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 166
>gb|CF433645.1|CF433645 NIT1_28_F11.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_F11_A002 3', mRNA sequence
Length = 688
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 78
|||||||| |||||||||| |||||||| || ||| | | || ||||| ||| | |||
Sbjct: 70 tgggtgatcctccatctgtaccccttcctgaagggtctcatgggcaggcagaaccgcaca 129
Query: 79 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct: 130 ccaacaatcgtcattgtctggtccatcctcctcgcgtccatcttctc 176
>gb|CN129665.1|CN129665 RHOH1_36_E05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_E05_A002 5', mRNA sequence
Length = 643
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 29 tccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattg 88
|||||||||| |||||||| || ||||| | || ||||| ||| | ||||| ||||| |
Sbjct: 639 tccatctgtaccccttcctgaagggtttcatgggcaggcagaaccgcacaccaacaatcg 580
Query: 89 tcatcgtctggtccatcct 107
|||| ||||||||||||||
Sbjct: 579 tcattgtctggtccatcct 561
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 161,082
Number of Sequences: 832831
Number of extensions: 161082
Number of successful extensions: 43440
Number of sequences better than 0.5: 80
Number of HSP's better than 0.5 without gapping: 79
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43236
Number of HSP's gapped (non-prelim): 132
length of query: 671
length of database: 491,359,669
effective HSP length: 19
effective length of query: 652
effective length of database: 475,535,880
effective search space: 310049393760
effective search space used: 310049393760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)