BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.4
(634 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE356628.1|BE356628 DG1_126_E06.g1_A002 Dark Grown 1 (DG... 773 0.0
gb|CW311468.1|CW311468 104_801_11470249_148_36282_015 Sorgh... 767 0.0
gb|BG051739.1|BG051739 FM1_60_F10.g1_A003 Floral-Induced Me... 763 0.0
gb|BG240279.1|BG240279 OV1_20_A11.b1_A002 Ovary 1 (OV1) Sor... 755 0.0
gb|CF757933.1|CF757933 DSAF1_25_B11.g1_A011 Drought-stresse... 753 0.0
gb|AW672027.1|AW672027 LG1_354_A12.b1_A002 Light Grown 1 (L... 735 0.0
gb|BG049446.1|BG049446 OV1_20_A11.g1_A002 Ovary 1 (OV1) Sor... 706 0.0
gb|BE356582.1|BE356582 DG1_126_E06.b1_A002 Dark Grown 1 (DG... 682 0.0
gb|BG158445.1|BG158445 FM1_60_F10.b1_A003 Floral-Induced Me... 682 0.0
gb|CF490113.1|CF490113 POL1_62_C01.g1_A002 Pollen Sorghum b... 676 0.0
gb|AW565949.1|AW565949 LG1_354_A12.g1_A002 Light Grown 1 (L... 650 0.0
gb|AW925050.1|AW925050 WS1_74_G10.b1_A002 Water-stressed 1 ... 650 0.0
gb|CF490031.1|CF490031 POL1_62_C01.b1_A002 Pollen Sorghum b... 648 0.0
gb|CD226182.1|CD226182 CCC1_44_A04.b1_A007 Callus culture/c... 646 0.0
gb|CW384483.1|CW384483 fsbb001f067i14f0 Sorghum methylation... 640 0.0
gb|CW310303.1|CW310303 104_799_11469644_116_35746_074 Sorgh... 634 e-180
gb|AW924764.1|AW924764 WS1_72_G07.b1_A002 Water-stressed 1 ... 624 e-177
gb|CD227917.1|CD227917 CCC1_56_G05.g1_A007 Callus culture/c... 624 e-177
gb|BG412792.1|BG412792 OV2_34_H04.b1_A002 Ovary 2 (OV2) Sor... 611 e-173
gb|CW454044.1|CW454044 fsbb001f198e23k0 Sorghum methylation... 607 e-172
gb|CN124945.1|CN124945 RHOH1_7_H09.g1_A002 Acid- and alkali... 607 e-172
gb|AW747659.1|AW747659 WS1_74_G10.g1_A002 Water-stressed 1 ... 605 e-171
gb|CW129319.1|CW129319 104_511_11114493_148_34762_091 Sorgh... 589 e-166
gb|AW746435.1|AW746435 WS1_53_G03.b1_A002 Water-stressed 1 ... 589 e-166
gb|CW454043.1|CW454043 fsbb001f198e23f0 Sorghum methylation... 583 e-165
gb|CW310304.1|CW310304 104_799_11469644_148_35750_074 Sorgh... 569 e-160
gb|CL187762.1|CL187762 104_403_10901109_114_32459_085 Sorgh... 555 e-156
gb|BF704767.1|BF704767 FM1_51_C06.b1_A003 Floral-Induced Me... 549 e-154
gb|CD227698.1|CD227698 CCC1_53_B08.b1_A007 Callus culture/c... 517 e-145
gb|CN124864.1|CN124864 RHOH1_7_H09.b1_A002 Acid- and alkali... 478 e-133
gb|BG050143.1|BG050143 FM1_67_B12.b1_A003 Floral-Induced Me... 474 e-132
gb|BQ656052.1|BQ656052 pRC0368 Sorghum halepense rhizome cD... 458 e-127
gb|CL187296.1|CL187296 104_402_10900781_116_32436_019 Sorgh... 434 e-120
gb|BF656536.1|BF656536 FM1_51_C06.g1_A003 Floral-Induced Me... 424 e-117
gb|CW311467.1|CW311467 104_801_11470249_116_36281_015 Sorgh... 375 e-102
gb|AW924861.1|AW924861 WS1_72_G07.g1_A002 Water-stressed 1 ... 341 5e-092
gb|BE356499.1|BE356499 DG1_125_G10.g1_A002 Dark Grown 1 (DG... 341 5e-092
gb|CL165793.1|CL165793 104_361_10808905_114_31820_121 Sorgh... 323 1e-086
gb|CW375799.1|CW375799 fsbb001f053f11f0 Sorghum methylation... 297 6e-079
gb|BE366223.1|BE366223 PI1_31_A07.b2_A002 Pathogen induced ... 232 3e-059
gb|CF772218.1|CF772218 DSBF1_30_H03.g1_A010 Drought-stresse... 214 7e-054
gb|AI724349.1|AI724349 RHIZ1_33_B10.y2_A001 Rhizome1 (RHIZ1... 204 7e-051
gb|BE366283.1|BE366283 PI1_31_A07.g1_A002 Pathogen induced ... 115 5e-024
gb|BE356498.1|BE356498 DG1_125_G11.g1_A002 Dark Grown 1 (DG... 109 3e-022
gb|AW746508.1|AW746508 WS1_53_G03.g1_A002 Water-stressed 1 ... 76 4e-012
gb|AW671110.1|AW671110 LG1_329_E02.b1_A002 Light Grown 1 (L... 48 0.001
gb|BZ332746.1|BZ332746 hx30d05.b1 WGS-SbicolorF (JM107 adap... 46 0.004
gb|BZ329188.1|BZ329188 hv84c11.b1 WGS-SbicolorF (JM107 adap... 42 0.061
gb|BZ423895.1|BZ423895 id54e12.g1 WGS-SbicolorF (DH5a methy... 40 0.24
gb|CL162048.1|CL162048 104_354_10806144_114_31830_048 Sorgh... 40 0.24
gb|CL170550.1|CL170550 104_371_10813901_148_31790_221 Sorgh... 40 0.24
gb|CW042041.1|CW042041 104_275_10506902_114_30284 Sorghum m... 40 0.24
gb|CW119437.1|CW119437 104_496_11108768_148_34635_026 Sorgh... 40 0.24
gb|CW150897.1|CW150897 104_551_11143655_116_36307_088 Sorgh... 40 0.24
gb|CW191706.1|CW191706 104_613_11178637_116_36935_049 Sorgh... 40 0.24
gb|CW191707.1|CW191707 104_613_11178637_148_36936_049 Sorgh... 40 0.24
gb|CW259247.1|CW259247 104_725_11228319_116_35182_056 Sorgh... 40 0.24
gb|CW422972.1|CW422972 fsbb001f132i22f0 Sorghum methylation... 40 0.24
gb|CW463093.1|CW463093 fsbb001f211i11k0 Sorghum methylation... 40 0.24
gb|AW565865.1|AW565865 LG1_352_G07.g1_A002 Light Grown 1 (L... 40 0.24
gb|BG053595.1|BG053595 RHIZ2_11_C08.g1_A003 Rhizome2 (RHIZ2... 40 0.24
gb|BM323062.1|BM323062 PIC1_12_A08.b1_A002 Pathogen-infecte... 40 0.24
gb|BM328461.1|BM328461 PIC1_29_E07.g1_A002 Pathogen-infecte... 40 0.24
gb|BM329507.1|BM329507 PIC1_39_A05.g1_A002 Pathogen-infecte... 40 0.24
gb|CD210278.1|CD210278 HS1_50_H03.b1_A012 Heat-shocked seed... 40 0.24
gb|CD236094.1|CD236094 SS1_25_G07.g1_A012 Salt-stressed see... 40 0.24
gb|CD430758.1|CD430758 ETH1_20_H03.g1_A002 Ethylene-treated... 40 0.24
gb|CD431862.1|CD431862 ETH1_11_A05.g1_A002 Ethylene-treated... 40 0.24
gb|CD462626.1|CD462626 ETH1_38_H10.g1_A002 Ethylene-treated... 40 0.24
gb|CF428338.1|CF428338 PH1_14_D07.g1_A002 Phosphorous-defic... 40 0.24
gb|CF485044.1|CF485044 POL1_29_C09.b1_A002 Pollen Sorghum b... 40 0.24
gb|CF758244.1|CF758244 DSAF1_29_C09.g1_A011 Drought-stresse... 40 0.24
gb|CN123906.1|CN123906 RHOH1_1_A10.g1_A002 Acid- and alkali... 40 0.24
gb|CN124918.1|CN124918 RHOH1_7_E12.g1_A002 Acid- and alkali... 40 0.24
gb|CN128083.1|CN128083 RHOH1_26_H08.g1_A002 Acid- and alkal... 40 0.24
gb|CN128498.1|CN128498 RHOH1_29_H11.g1_A002 Acid- and alkal... 40 0.24
gb|CN128800.1|CN128800 RHOH1_31_D12.g1_A002 Acid- and alkal... 40 0.24
gb|CN132827.1|CN132827 OX1_8_A12.g1_A002 Oxidatively-stress... 40 0.24
gb|CN136541.1|CN136541 OX1_43_G06.g1_A002 Oxidatively-stres... 40 0.24
gb|CN141048.1|CN141048 OX1_49_B07.b1_A002 Oxidatively-stres... 40 0.24
gb|CN141133.1|CN141133 OX1_49_B07.g1_A002 Oxidatively-stres... 40 0.24
gb|CX608256.1|CX608256 ANR1_37_C04.g1_A002 Anaerobic roots ... 40 0.24
>gb|BE356628.1|BE356628 DG1_126_E06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 633
Score = 773 bits (390), Expect = 0.0
Identities = 447/466 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 407
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 406 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 347
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 346 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 287
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 286 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 227
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 226 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 167
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 107
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccg 584
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 106 ttggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccg 47
Query: 585 atcttgggggccagcgacgacgccgcgccgacctcgcctcccgtca 630
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 46 atcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtca 1
>gb|CW311468.1|CW311468 104_801_11470249_148_36282_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470249, DNA
sequence
Length = 694
Score = 767 bits (387), Expect = 0.0
Identities = 441/459 (96%)
Strand = Plus / Plus
Query: 176 cctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggg 235
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggg 260
Query: 236 gtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggt 295
|||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 261 gtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggt 320
Query: 296 cccggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtc 355
||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct: 321 gccggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtc 380
Query: 356 gtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcggg 415
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcggg 440
Query: 416 ttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctg 475
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctg 500
Query: 476 ccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctc 560
Query: 536 cttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggc 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 cttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgc 620
Query: 596 cagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcgacgacgccgcgccgacctcgcctcccgtcacgcg 659
>gb|BG051739.1|BG051739 FM1_60_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 576
Score = 763 bits (385), Expect = 0.0
Identities = 445/465 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 406
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 405 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 346
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 345 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 286
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 285 tcgacaatgtcctcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 226
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 225 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 166
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 106
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccg 584
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 105 ttggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccg 46
Query: 585 atcttgggggccagcgacgacgccgcgccgacctcgcctcccgtc 629
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 45 atcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtc 1
>gb|BG240279.1|BG240279 OV1_20_A11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 755 bits (381), Expect = 0.0
Identities = 432/449 (96%)
Strand = Plus / Minus
Query: 186 gaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtccttccca 245
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 547 gaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtccttgcca 488
Query: 246 tcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcccggccaac 305
|| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 487 tcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccggccatc 428
Query: 306 tccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctg 365
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct: 427 tccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctg 368
Query: 366 atgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagc 425
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 atgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagc 308
Query: 426 gccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgc 485
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 307 gccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgc 248
Query: 486 acggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatg 188
Query: 546 tcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgac 605
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 187 tcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgac 128
Query: 606 gccgcgccgacctcgcctcccgtcacgcg 634
|||||||||||||||||||||||||||||
Sbjct: 127 gccgcgccgacctcgcctcccgtcacgcg 99
>gb|CF757933.1|CF757933 DSAF1_25_B11.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_B11_A011 3', mRNA sequence
Length = 580
Score = 753 bits (380), Expect = 0.0
Identities = 437/456 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 397
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 396 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 337
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 336 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 277
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 276 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 217
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 216 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 157
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 97
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccg 584
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 96 ttggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccg 37
Query: 585 atcttgggggccagcgacgacgccgcgccgacctcg 620
|||||||| |||||||||||||||||||||||||||
Sbjct: 36 atcttgggtgccagcgacgacgccgcgccgacctcg 1
>gb|AW672027.1|AW672027 LG1_354_A12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 558
Score = 735 bits (371), Expect = 0.0
Identities = 422/439 (96%)
Strand = Plus / Minus
Query: 196 cgacctcaccatcatcgatctcctgctgcaagtccttggggtccttcccatcgacggtgc 255
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 558 cgacctcaccatcatcgatctcctgctgcaggtccttggggtccttgccatcaacggtgc 499
Query: 256 acccgacgctgacgcaggtccccaggatctccttgacggtcccggccaactccttggcca 315
|||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct: 498 acccaacgctgacgcaggtcccgaggatctccttgacggtgccggccatctccttggcca 439
Query: 316 tggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatgttgccgc 375
|||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct: 438 tggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatgttgccac 379
Query: 376 tgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgccttgatga 435
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 378 tgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagcgccttgatga 319
Query: 436 cgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacggtgagct 495
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgcacggtgagct 259
Query: 496 tgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcgccga 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 tgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccga 199
Query: 556 tcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccga 615
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 198 tcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccga 139
Query: 616 cctcgcctcccgtcacgcg 634
|||||||||||||||||||
Sbjct: 138 cctcgcctcccgtcacgcg 120
>gb|BG049446.1|BG049446 OV1_20_A11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 706 bits (356), Expect = 0.0
Identities = 410/428 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 371
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 370 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 311
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 310 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 251
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 250 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 191
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 190 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 131
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 71
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccg 584
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 70 ttggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccg 11
Query: 585 atcttggg 592
||||||||
Sbjct: 10 atcttggg 3
>gb|BE356582.1|BE356582 DG1_126_E06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 682 bits (344), Expect = 0.0
Identities = 392/408 (96%)
Strand = Plus / Minus
Query: 227 gtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctc 286
||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 525 gtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctc 466
Query: 287 cttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctc 346
||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 465 cttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatctc 406
Query: 347 gatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtc 406
|| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 405 gacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtc 346
Query: 407 cctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagac 466
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 345 cctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggagac 286
Query: 467 cttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcctt 226
Query: 527 ggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgat 586
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 225 ggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgat 166
Query: 587 cttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 118
>gb|BG158445.1|BG158445 FM1_60_F10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 511
Score = 682 bits (344), Expect = 0.0
Identities = 392/408 (96%)
Strand = Plus / Minus
Query: 227 gtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctc 286
||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 507 gtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctc 448
Query: 287 cttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctc 346
||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 cttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatctc 388
Query: 347 gatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtc 406
|| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 gacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtc 328
Query: 407 cctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagac 466
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 327 cctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggagac 268
Query: 467 cttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcctt 208
Query: 527 ggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgat 586
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 207 ggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgat 148
Query: 587 cttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 100
>gb|CF490113.1|CF490113 POL1_62_C01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_C01_A002 5', mRNA sequence
Length = 715
Score = 676 bits (341), Expect = 0.0
Identities = 451/479 (94%), Gaps = 9/479 (1%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctc-accatcatcgatctcctgctg 223
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 592 tagttgaatagcctttaagcggaggggatctcgacctcnaccatcatcgatctcctgctg 533
Query: 224 caagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggat 283
|| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 532 caggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggat 473
Query: 284 ctccttgacggtcccggccaactccttggccatggacc-tgttccg-catggtcttggcg 341
|||||||||||| ||||||| ||||||||||||||||| || ||| |||||||||||||
Sbjct: 472 ctccttgacggtgccggccatctccttggccatggaccctgggccggcatggtcttggcg 413
Query: 342 atctcgatgacgt-cgtcgagg--ctga-tgttgccgc--tgtgcttgatgttcttgacc 395
||||||| | || |||||||| |||| ||||||| | ||||||||||||||||||||
Sbjct: 412 atctcgacaatgttcgtcgaggggctgaatgttgccccactgtgcttgatgttcttgacc 353
Query: 396 ttcttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggcggagggg 455
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggc 293
Query: 456 acgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggccc 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggccc 233
Query: 516 ttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccg 575
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 232 ttccagtccttggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccg 173
Query: 576 agcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agcgggccgatcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 114
>gb|AW565949.1|AW565949 LG1_354_A12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 585
Score = 650 bits (328), Expect = 0.0
Identities = 382/400 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 341
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 340 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 281
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 280 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 221
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 220 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 161
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 160 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 101
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 41
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttcttcg 564
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 40 ttggcggtctccttggcgatgtcctcaccgatcttcttcg 1
>gb|AW925050.1|AW925050 WS1_74_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 650 bits (328), Expect = 0.0
Identities = 382/400 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 349
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 348 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 289
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 288 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 229
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 228 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 169
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 168 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 109
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 49
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttcttcg 564
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 48 ttggcggtctccttggcgatgtcctcaccgatcttcttcg 9
>gb|CF490031.1|CF490031 POL1_62_C01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_C01_A002 3', mRNA sequence
Length = 585
Score = 648 bits (327), Expect = 0.0
Identities = 384/403 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 344
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 343 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 284
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 283 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 224
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 223 tcgacaatgtcgtccaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 164
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 163 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 104
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 44
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttcttcgggg 567
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 43 ttggcggtctccttggcgatgtcctcaccgatcttcttcgggg 1
>gb|CD226182.1|CD226182 CCC1_44_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_A04_A007 3', mRNA sequence
Length = 623
Score = 646 bits (326), Expect = 0.0
Identities = 380/398 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 339
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 338 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 279
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 278 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 219
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 218 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 159
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 158 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 99
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 39
Query: 525 ttggcggtctccttggcgatgtcctcgccgatcttctt 562
|||||||||||||||||||||||||| |||||||||||
Sbjct: 38 ttggcggtctccttggcgatgtcctcaccgatcttctt 1
>gb|CW384483.1|CW384483 fsbb001f067i14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067i14, DNA
sequence
Length = 660
Score = 640 bits (323), Expect = 0.0
Identities = 425/459 (92%)
Strand = Plus / Plus
Query: 176 cctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggg 235
|||| |||| || |||||||||||||| || ||||| |||||||| |||| |||||||||
Sbjct: 35 ccttcaagcggatgggatctcgacctcgccgtcatcaatctcctgttgcaggtccttggg 94
Query: 236 gtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggt 295
|||||| || || |||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 95 gtccttgccgtctacggtgcatccgacgctgacgcaggtgccgaggatctccttgacggt 154
Query: 296 cccggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtc 355
||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 155 gccggccatctccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtc 214
Query: 356 gtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcggg 415
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 215 gtcgaggctgatgttgccgctgtgcttaatgttcttgaccttcttcctgtccctctcggg 274
Query: 416 ttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctg 475
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 275 ctccttgagcgccttgatgacgagcgcggcggcggagggcacgacggagaccttggcctg 334
Query: 476 ccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctc 535
|| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 335 cctgttctgtaccgtgagcttgacggtgacgcggaggcccttccagtccttggccgtctc 394
Query: 536 cttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggc 595
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 395 cttggcgatgtcctcgccgatcttcttcggggagaggccgagcgggccgatcttgggcgc 454
Query: 596 cagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
||| |||||||||||||| ||||| || |||||||||||
Sbjct: 455 cagggacgacgccgcgcccacctccccgcccgtcacgcg 493
>gb|CW310303.1|CW310303 104_799_11469644_116_35746_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469644, DNA
sequence
Length = 645
Score = 634 bits (320), Expect = e-180
Identities = 422/456 (92%)
Strand = Plus / Plus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || || ||||| ||||| || || || ||||||||||||| ||||||||||||
Sbjct: 111 ttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 170
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||
Sbjct: 171 cttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgcc 230
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 231 ggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtc 290
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 291 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctc 350
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 351 cttgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcg 410
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 411 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 470
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 471 ggcgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccag 530
Query: 599 cgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||||||||||||||||||| || ||||||||
Sbjct: 531 cgacgacgccgcgccgacctcgccgccggtcacgcg 566
>gb|AW924764.1|AW924764 WS1_72_G07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 624 bits (315), Expect = e-177
Identities = 411/443 (92%)
Strand = Plus / Minus
Query: 192 atctcgacctcaccatcatcgatctcctgctgcaagtccttggggtccttcccatcgacg 251
||||| ||||| || || || ||||||||||||| ||||||||||||||| || ||||||
Sbjct: 554 atctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtccttgccgtcgacg 495
Query: 252 gtgcacccgacgctgacgcaggtccccaggatctccttgacggtcccggccaactccttg 311
||||| ||||| ||||||||||| || || |||||||||||||| ||||||| ||||||
Sbjct: 494 gtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggccatttccttg 435
Query: 312 gccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatgttg 371
|||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 434 gccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatgttg 375
Query: 372 ccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgccttg 431
||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct: 374 ccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagcgccttg 315
Query: 432 atgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacggtg 491
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 314 atgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctggacggtg 255
Query: 492 agcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcg 551
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 agcttgacggtgacgcgggggcccttccagtccttggccgtctccttggcgatgtcctct 195
Query: 552 ccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcg 611
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcg 135
Query: 612 ccgacctcgcctcccgtcacgcg 634
||||||||||| || ||||||||
Sbjct: 134 ccgacctcgccgccggtcacgcg 112
>gb|CD227917.1|CD227917 CCC1_56_G05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_G05_A007 5', mRNA sequence
Length = 637
Score = 624 bits (315), Expect = e-177
Identities = 395/422 (93%)
Strand = Plus / Minus
Query: 213 atctcctgctgcaagtccttggggtccttcccatcgacggtgcacccgacgctgacgcag 272
||||||||||||| |||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 533 atctcctgctgcaggtccttggggtcctngccgtcgacggtgcatccgacactgacgcag 474
Query: 273 gtccccaggatctccttgacggtcccggccaactccttggccatggacctgttccgcatg 332
|| || || |||||||||||||| ||||||| |||||||||||||||||| || ||||
Sbjct: 473 gtgccgagaatctccttgacggtgccggccatttccttggccatggacctgggcctcatg 414
Query: 333 gtcttggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttg 392
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttg 354
Query: 393 accttcttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggcggag 452
|||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 353 accttcttgcggtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggag 294
Query: 453 gggacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggagg 512
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 293 ggaacgacggagaccttggcctgtcggttctggacggtgagcttgacggtgacgcggagg 234
Query: 513 cccttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagaga 572
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 233 cccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttgggggagaga 174
Query: 573 ccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacg 632
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 173 ccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgccgccggtcacg 114
Query: 633 cg 634
||
Sbjct: 113 cg 112
>gb|BG412792.1|BG412792 OV2_34_H04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 611 bits (308), Expect = e-173
Identities = 383/408 (93%)
Strand = Plus / Minus
Query: 227 gtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctc 286
||||||||||||||| || ||||||||||| ||||| ||||||||||| || || |||||
Sbjct: 507 gtccttggggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctc 448
Query: 287 cttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatctc 346
||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct: 447 cttgacggtgccggccatttccttggccatggacctgggcctcatggtcttggcgatctc 388
Query: 347 gatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtc 406
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 387 gacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtc 328
Query: 407 cctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagac 466
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 327 cctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggaacgacggagac 268
Query: 467 cttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcctt 526
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttggcctgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtcctt 208
Query: 527 ggcggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgat 586
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 207 ggccgtctccttggcgatgtcctctccgatcttcttgggggagagaccgagcgggccgat 148
Query: 587 cttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacgcg 634
|||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 147 cttgggggccagcgacgacgccgcgccgacctcgccgccggtcacgcg 100
>gb|CW454044.1|CW454044 fsbb001f198e23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e23, DNA
sequence
Length = 737
Score = 607 bits (306), Expect = e-172
Identities = 402/434 (92%)
Strand = Plus / Plus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || || ||||| ||||| || || || ||||||||||||| ||||||||||||
Sbjct: 304 ttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 363
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||
Sbjct: 364 cttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgcc 423
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 424 ggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtc 483
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 484 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctc 543
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 544 cttgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcg 603
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 604 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 663
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccag 598
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 664 ggcgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccag 723
Query: 599 cgacgacgccgcgc 612
||||||||||||||
Sbjct: 724 cgacgacgccgcgc 737
>gb|CN124945.1|CN124945 RHOH1_7_H09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H09_A002 5', mRNA sequence
Length = 792
Score = 607 bits (306), Expect = e-172
Identities = 393/422 (93%)
Strand = Plus / Minus
Query: 213 atctcctgctgcaagtccttggggtccttcccatcgacggtgcacccgacgctgacgcag 272
||||||||||||| ||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 690 atctcctgctgcaggtccttggggtccttgccgtcgacggtgcatccgacactgacgcag 631
Query: 273 gtccccaggatctccttgacggtcccggccaactccttggccatggacctgttccgcatg 332
|| || || |||||||||||||| ||||||| || ||||||||||||||| || ||||
Sbjct: 630 gtgccgagaatctccttgacggtgccggccatttcgttggccatggacctgggcctcatg 571
Query: 333 gtcttggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttg 392
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttg 511
Query: 393 accttcttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggcggag 452
|||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 510 accttcttgcggtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggag 451
Query: 453 gggacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggagg 512
|| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 450 ggaccgacggagaccttggcctgtcggttctggacggtgagcttgacggtgacgcggagg 391
Query: 513 cccttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcggggagaga 572
||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||
Sbjct: 390 cccttccagtccttggccgtctcctcggcgatgtcctctccgatcttcttgggggagaga 331
Query: 573 ccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgtcacg 632
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 330 ccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgccgccggtcacg 271
Query: 633 cg 634
||
Sbjct: 270 cg 269
>gb|AW747659.1|AW747659 WS1_74_G10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 555
Score = 605 bits (305), Expect = e-171
Identities = 356/373 (95%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 314
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 313 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 254
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 253 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 194
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 193 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 134
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 133 tccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggag 74
Query: 465 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 accttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcc 14
Query: 525 ttggcggtctcct 537
|||||||||||||
Sbjct: 13 ttggcggtctcct 1
>gb|CW129319.1|CW129319 104_511_11114493_148_34762_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114493, DNA
sequence
Length = 665
Score = 589 bits (297), Expect = e-166
Identities = 366/389 (94%)
Strand = Plus / Plus
Query: 246 tcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcccggccaac 305
||||||||||| ||||| ||||||||||| || || |||||||||||||| |||||||
Sbjct: 3 tcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggccatt 62
Query: 306 tccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctg 365
|||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 63 tccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggctg 122
Query: 366 atgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagc 425
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 123 atgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagc 182
Query: 426 gccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgc 485
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 183 gccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctgg 242
Query: 486 acggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatg 545
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 243 acggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatg 302
Query: 546 tcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgac 605
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgac 362
Query: 606 gccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||| || ||||||||
Sbjct: 363 gccgcgccgacctcgccgccggtcacgcg 391
>gb|AW746435.1|AW746435 WS1_53_G03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 498
Score = 589 bits (297), Expect = e-166
Identities = 366/389 (94%)
Strand = Plus / Minus
Query: 246 tcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcccggccaac 305
||||||||||| ||||| ||||||||||| || || |||||||||||||| |||||||
Sbjct: 494 tcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggccatt 435
Query: 306 tccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctg 365
|||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 434 tccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggctg 375
Query: 366 atgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagc 425
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 374 atgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagc 315
Query: 426 gccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgc 485
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 314 gccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctgg 255
Query: 486 acggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatg 545
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 254 acggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatg 195
Query: 546 tcctcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgac 605
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgac 135
Query: 606 gccgcgccgacctcgcctcccgtcacgcg 634
||||||||||||||||| || ||||||||
Sbjct: 134 gccgcgccgacctcgccgccggtcacgcg 106
>gb|CW454043.1|CW454043 fsbb001f198e23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e23, DNA
sequence
Length = 718
Score = 583 bits (294), Expect = e-165
Identities = 363/386 (94%)
Strand = Plus / Minus
Query: 249 acggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcccggccaactcc 308
|||||||| ||||| ||||||||||| || || |||||||||||||| ||||||| |||
Sbjct: 718 acggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggccatttcc 659
Query: 309 ttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatg 368
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 658 ttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatg 599
Query: 369 ttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgcc 428
|||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct: 598 ttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagcgcc 539
Query: 429 ttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacg 488
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 538 ttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctggacg 479
Query: 489 gtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcc 548
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 478 gtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcc 419
Query: 549 tcgccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgcc 608
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgacgcc 359
Query: 609 gcgccgacctcgcctcccgtcacgcg 634
|||||||||||||| || ||||||||
Sbjct: 358 gcgccgacctcgccgccggtcacgcg 333
>gb|CW310304.1|CW310304 104_799_11469644_148_35750_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469644, DNA
sequence
Length = 608
Score = 569 bits (287), Expect = e-160
Identities = 350/371 (94%)
Strand = Plus / Minus
Query: 264 ctgacgcaggtccccaggatctccttgacggtcccggccaactccttggccatggacctg 323
||||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 606 ctgacgcaggtgccgagaatctccttgacggtgccggccatttccttggccatggacctg 547
Query: 324 ttccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttg 383
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 546 ggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttg 487
Query: 384 atgttcttgaccttcttcctgtccctctcgggttccttgagcgccttgatgacgagcgcc 443
||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 486 atgttcttgaccttcttgcggtccctctcgggctccttgagcgccttgatgacgagcgcc 427
Query: 444 gcggcggaggggacgacggagaccttggcctgccggttctgcacggtgagcttgacggtg 503
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 426 gcggcggagggaacgacggagaccttggcctgtcggttctggacggtgagcttgacggtg 367
Query: 504 acgcggaggcccttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttc 563
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 366 acgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttg 307
Query: 564 ggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcct 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgccg 247
Query: 624 cccgtcacgcg 634
|| ||||||||
Sbjct: 246 ccggtcacgcg 236
>gb|CL187762.1|CL187762 104_403_10901109_114_32459_085 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901109, DNA
sequence
Length = 582
Score = 555 bits (280), Expect = e-156
Identities = 310/320 (96%)
Strand = Plus / Plus
Query: 315 atggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatgttgccg 374
||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 atggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatgttgcca 60
Query: 375 ctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgccttgatg 434
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 ctgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagcgccttgatg 120
Query: 435 acgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacggtgagc 494
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgcacggtgagc 180
Query: 495 ttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcgccg 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 ttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccg 240
Query: 555 atcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccg 614
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 241 atcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccg 300
Query: 615 acctcgcctcccgtcacgcg 634
||||||||||||||||||||
Sbjct: 301 acctcgcctcccgtcacgcg 320
>gb|BF704767.1|BF704767 FM1_51_C06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 409
Score = 549 bits (277), Expect = e-154
Identities = 301/309 (97%)
Strand = Plus / Minus
Query: 326 ccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgat 385
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 408 ccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatgttgccactgtgcttgat 349
Query: 386 gttcttgaccttcttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgc 445
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 348 gttcttgaccttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgccgc 289
Query: 446 ggcggaggggacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgac 505
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggcggagggcacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgac 229
Query: 506 gcggaggcccttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcgg 565
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 228 gcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccgatcttcttcgg 169
Query: 566 ggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcc 625
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 168 ggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccgacctcgcctcc 109
Query: 626 cgtcacgcg 634
|||||||||
Sbjct: 108 cgtcacgcg 100
>gb|CD227698.1|CD227698 CCC1_53_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_B08_A007 3', mRNA sequence
Length = 592
Score = 517 bits (261), Expect = e-145
Identities = 357/389 (91%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || || ||||| ||||| || || || ||||||||||||| ||||||||||||
Sbjct: 389 ttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 330
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||
Sbjct: 329 cttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgcc 270
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 269 ggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtc 210
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 209 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctc 150
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 149 cttgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcg 90
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 89 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 30
Query: 539 ggcgatgtcctcgccgatcttcttcgggg 567
|||||||||||| ||||||||||| ||||
Sbjct: 29 ggcgatgtcctctccgatcttcttggggg 1
>gb|CN124864.1|CN124864 RHOH1_7_H09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H09_A002 3', mRNA sequence
Length = 598
Score = 478 bits (241), Expect = e-133
Identities = 358/397 (90%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || || ||||| ||||| || || || ||||||||||||| ||||||||||||
Sbjct: 397 ttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 338
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||
Sbjct: 337 cttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgcc 278
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| |||||||||||||||||| || |||||||||||||||||||| ||| |||||
Sbjct: 277 ggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacctcgtc 218
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 217 aaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctc 158
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 478
|||||||||||||||||| |||||| |||||||||| |||||||| ||||||||||| ||
Sbjct: 157 cttgagcgccttgatgacaagcgccccggcggagggaacgacggaaaccttggcctgtcg 98
Query: 479 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 538
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 97 gttctggacggtgagcttgacggtgacccggaggcccttccagtccttggccgtctcctt 38
Query: 539 ggcgatgtcctcgccgatcttcttcggggagagaccg 575
|||||||||||| || |||||||| ||||||||||||
Sbjct: 37 ggcgatgtcctctccaatcttcttgggggagagaccg 1
>gb|BG050143.1|BG050143 FM1_67_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 394
Score = 474 bits (239), Expect = e-132
Identities = 289/306 (94%)
Strand = Plus / Minus
Query: 329 catggtcttggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgtt 388
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 393 catggtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttaatgtt 334
Query: 389 cttgaccttcttcctgtccctctcgggttccttgagcgccttgatgacgagcgccgcggc 448
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 333 cttgaccttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgcggcggc 274
Query: 449 ggaggggacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcg 508
|||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 273 ggagggcacgacggagaccttggcctgcctgttctgtaccgtgagcttgacggtgacgcg 214
Query: 509 gaggcccttccagtccttggcggtctccttggcgatgtcctcgccgatcttcttcgggga 568
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaggcccttccagtccttcgccgtctccttggcgatgtcctcgccgatcttcttcgggga 154
Query: 569 gagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgcctcccgt 628
||| |||||||||||||||||||| ||||| || ||||||||||| ||||| || |||||
Sbjct: 153 gaggccgagcgggccgatcttgggcgccagggangacgccgcgcccacctccccgcccgt 94
Query: 629 cacgcg 634
||||||
Sbjct: 93 cacgcg 88
>gb|BQ656052.1|BQ656052 pRC0368 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0368, mRNA sequence
Length = 461
Score = 458 bits (231), Expect = e-127
Identities = 288/307 (93%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 248
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 247 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 188
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 187 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 128
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 127 tcgacaatgtcgtcgaggctgatattgccactgtgcttgatgttcttgaccttcttcctg 68
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgccgcggcggaggggacgacggag 464
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 67 tccctctcgggctccttgagcgctttgatgacgagcgccgcggcggagggcacgacggag 8
Query: 465 accttgg 471
|||||||
Sbjct: 7 accttgg 1
>gb|CL187296.1|CL187296 104_402_10900781_116_32436_019 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900781, DNA
sequence
Length = 648
Score = 434 bits (219), Expect = e-120
Identities = 252/263 (95%)
Strand = Plus / Plus
Query: 372 ccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgccttg 431
||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct: 1 ccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagcgccttg 60
Query: 432 atgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacggtg 491
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 61 atgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctggacggtg 120
Query: 492 agcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcg 551
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 agcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctct 180
Query: 552 ccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcg 611
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcg 240
Query: 612 ccgacctcgcctcccgtcacgcg 634
||||||||||| || ||||||||
Sbjct: 241 ccgacctcgccgccggtcacgcg 263
>gb|BF656536.1|BF656536 FM1_51_C06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 460
Score = 424 bits (214), Expect = e-117
Identities = 262/278 (94%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 219
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 218 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 159
Query: 285 tccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttggcgatc 344
||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 158 tccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatc 99
Query: 345 tcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctg 404
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 98 tcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctg 39
Query: 405 tccctctcgggttccttgagcgccttgatgacgagcgc 442
||||||||||| ||||||||||||||||||||||||||
Sbjct: 38 tccctctcgggctccttgagcgccttgatgacgagcgc 1
>gb|CW311467.1|CW311467 104_801_11470249_116_36281_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470249, DNA
sequence
Length = 702
Score = 375 bits (189), Expect = e-102
Identities = 201/205 (98%)
Strand = Plus / Minus
Query: 430 tgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacgg 489
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 696 tgatgacgagcgccgcggcggagggcacgacgtagaccttggcctgccggttctgcacgg 637
Query: 490 tgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcct 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcct 577
Query: 550 cgccgatcttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccg 609
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 576 caccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccg 517
Query: 610 cgccgacctcgcctcccgtcacgcg 634
|||||||||||||||||||||||||
Sbjct: 516 cgccgacctcgcctcccgtcacgcg 492
>gb|AW924861.1|AW924861 WS1_72_G07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 490
Score = 341 bits (172), Expect = 5e-092
Identities = 250/276 (90%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || || ||||| ||||| || || || ||||||||||||| ||||||||||||
Sbjct: 278 ttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 219
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||
Sbjct: 218 cttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgcc 159
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 158 ggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtc 99
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttc 418
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 98 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctc 39
Query: 419 cttgagcgccttgatgacgagcgccgcggcggaggg 454
||||||||||||||||||||||||||||||||||||
Sbjct: 38 cttgagcgccttgatgacgagcgccgcggcggaggg 3
>gb|BE356499.1|BE356499 DG1_125_G10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 330
Score = 341 bits (172), Expect = 5e-092
Identities = 232/252 (92%)
Strand = Plus / Minus
Query: 189 gggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtccttcccatcg 248
|||||||||||||| || ||||| |||||||| |||| ||||||||||||||| || ||
Sbjct: 252 gggatctcgacctcgccgtcatcaatctcctgttgcaggtccttggggtccttgccgtct 193
Query: 249 acggtgcacccgacgctgacgcaggtccccaggatctccttgacggtcccggccaactcc 308
|||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| ||||
Sbjct: 192 acggtgcatccgacgctgacgcaggtgccgaggatctccttgacggtgccggccatctcc 133
Query: 309 ttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtcgaggctgatg 368
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 132 ttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatg 73
Query: 369 ttgccgctgtgcttgatgttcttgaccttcttcctgtccctctcgggttccttgagcgcc 428
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 72 ttgccgctgtgcttaatgttcttgaccttcttactgtccctctcgggctccttgagcgcc 13
Query: 429 ttgatgacgagc 440
||||||||||||
Sbjct: 12 ttgatgacgagc 1
>gb|CL165793.1|CL165793 104_361_10808905_114_31820_121 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808905, DNA
sequence
Length = 720
Score = 323 bits (163), Expect = 1e-086
Identities = 187/195 (95%)
Strand = Plus / Plus
Query: 440 cgccgcggcggaggggacgacggagaccttggcctgccggttctgcacggtgagcttgac 499
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 cgccgcggcggagggaacgacggagaccttggcctgtcggttctggacggtgagcttgac 60
Query: 500 ggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcgccgatctt 559
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 61 ggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatctt 120
Query: 560 cttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctc 619
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctc 180
Query: 620 gcctcccgtcacgcg 634
||| || ||||||||
Sbjct: 181 gccgccggtcacgcg 195
>gb|CW375799.1|CW375799 fsbb001f053f11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053f11, DNA
sequence
Length = 459
Score = 297 bits (150), Expect = 6e-079
Identities = 186/198 (93%)
Strand = Plus / Plus
Query: 437 gagcgccgcggcggaggggacgacggagaccttggcctgccggttctgcacggtgagctt 496
|||||| ||||||||||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct: 1 gagcgcggcggcggagggcacgacggagaccttggcctgcctgttctgtaccgtgagctt 60
Query: 497 gacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcgccgat 556
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 gacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctcgccgat 120
Query: 557 cttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgac 616
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 121 cttcttcggggagaggccgagcgggccgatcttgggcgccagggacgacgccgcgcccac 180
Query: 617 ctcgcctcccgtcacgcg 634
||| || |||||||||||
Sbjct: 181 ctccccgcccgtcacgcg 198
>gb|BE366223.1|BE366223 PI1_31_A07.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 174
Score = 232 bits (117), Expect = 3e-059
Identities = 132/137 (96%)
Strand = Plus / Minus
Query: 498 acggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcgccgatc 557
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 174 acggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccgatc 115
Query: 558 ttcttcggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacc 617
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 114 ttatttggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgcagacc 55
Query: 618 tcgcctcccgtcacgcg 634
|||||||||||||||||
Sbjct: 54 tcgcctcccgtcacgcg 38
>gb|CF772218.1|CF772218 DSBF1_30_H03.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_30_H03_A010 3', mRNA sequence
Length = 421
Score = 214 bits (108), Expect = 7e-054
Identities = 189/216 (87%)
Strand = Plus / Minus
Query: 179 ttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtc 238
|||||| || || ||||| ||||| || || || ||||||||||||| ||||||||||||
Sbjct: 216 ttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 157
Query: 239 cttcccatcgacggtgcacccgacgctgacgcaggtccccaggatctccttgacggtccc 298
||| || ||||||| ||| ||||| ||||||||||| || | ||||||||||||| ||
Sbjct: 156 cttgccgtcgacggggcatccgacactgacgcaggtgccgaaaatctccttgacggggcc 97
Query: 299 ggccaactccttggccatggacctgttccgcatggtcttggcgatctcgatgacgtcgtc 358
||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 96 ggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtc 37
Query: 359 gaggctgatgttgccgctgtgcttgatgttcttgac 394
|||||||||||||||||||||||||||||||||||
Sbjct: 36 aaggctgatgttgccgctgtgcttgatgttcttgac 1
>gb|AI724349.1|AI724349 RHIZ1_33_B10.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 335
Score = 204 bits (103), Expect = 7e-051
Identities = 124/131 (94%)
Strand = Plus / Minus
Query: 165 tagttgtatagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgc 224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tagttgaatagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgc 74
Query: 225 aagtccttggggtccttcccatcgacggtgcacccgacgctgacgcaggtccccaggatc 284
| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 73 aggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatc 14
Query: 285 tccttgacggt 295
|||||||||||
Sbjct: 13 tccttgacggt 3
>gb|BE366283.1|BE366283 PI1_31_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 124
Score = 115 bits (58), Expect = 5e-024
Identities = 64/66 (96%)
Strand = Plus / Minus
Query: 172 atagcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtcct 231
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 72 atagcctttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtcct 13
Query: 232 tggggt 237
||||||
Sbjct: 12 tggggt 7
>gb|BE356498.1|BE356498 DG1_125_G11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 104
Score = 109 bits (55), Expect = 3e-022
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 279 aggatctccttgacggtcccggccaactccttggccatggacctgttccgcatggtcttg 338
|||||||||||||||| ||||||| |||||||||||||||||| || ||||| ||||
Sbjct: 103 aggatctccttgacggagccggccatgtccttggccatggacctgagcctcatggacttg 44
Query: 339 gcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgct 381
|||||||| | ||| || |||||||||||||||||||||||||
Sbjct: 43 gcgatctcaacgacatcctcgaggctgatgttgccgctgtgct 1
>gb|AW746508.1|AW746508 WS1_53_G03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 279
Score = 75.8 bits (38), Expect = 4e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 189 gggatctcgacctcaccatcatcgatctcctgctgcaagtccttggggtccttcccatcg 248
|||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||
Sbjct: 75 gggatctccacctcgccgtcgtcaatctcctgctgcaagtccttggggtccttgccgtcg 16
Query: 249 acggtgcacccgac 262
|||| ||| |||||
Sbjct: 15 acggggcatccgac 2
>gb|AW671110.1|AW671110 LG1_329_E02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 48.1 bits (24), Expect = 0.001
Identities = 101/126 (80%), Gaps = 3/126 (2%)
Strand = Plus / Minus
Query: 470 ggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggc 529
|||||| |||||||| | |||||||||||| || ||||| | ||| |||||||| | |
Sbjct: 246 ggcctgacggttctggatggtgagcttgacagtcacgcgcaagcctttccagtc---gcc 190
Query: 530 ggtctccttggcgatgtcctcgccgatcttcttcggggagagaccgagcgggccgatctt 589
|| ||||||| ||||| || |||| |||||| ||||| ||||| || || ||||||||
Sbjct: 189 agtggccttggcaatgtcttctccgaccttcttgggggacagaccaagaggaccgatctt 130
Query: 590 gggggc 595
|||||
Sbjct: 129 aggggc 124
>gb|BZ332746.1|BZ332746 hx30d05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx30d05 5', DNA sequence
Length = 458
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 556 tcttcttcggggagagaccgagcgggccgatcttgggggccag 598
||||||||||| | || || |||||||| ||||||||||||||
Sbjct: 1 tcttcttcgggaaaaggccaagcgggccaatcttgggggccag 43
>gb|BZ329188.1|BZ329188 hv84c11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv84c11 5', DNA sequence
Length = 307
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 527 ggcggtctccttggcgatgtc 547
|||||||||||||||||||||
Sbjct: 179 ggcggtctccttggcgatgtc 159
>gb|BZ423895.1|BZ423895 id54e12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id54e12 5', DNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 527 ggcggtctccttggcgatgt 546
||||||||||||||||||||
Sbjct: 368 ggcggtctccttggcgatgt 387
>gb|CL162048.1|CL162048 104_354_10806144_114_31830_048 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806144, DNA
sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 449 ggaggggacgacggagacct 468
||||||||||||||||||||
Sbjct: 545 ggaggggacgacggagacct 526
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,190
Number of Sequences: 832831
Number of extensions: 198190
Number of successful extensions: 57648
Number of sequences better than 0.5: 82
Number of HSP's better than 0.5 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57517
Number of HSP's gapped (non-prelim): 128
length of query: 634
length of database: 491,359,669
effective HSP length: 19
effective length of query: 615
effective length of database: 475,535,880
effective search space: 292454566200
effective search space used: 292454566200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)