BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.3
(985 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD227917.1|CD227917 CCC1_56_G05.g1_A007 Callus culture/c... 904 0.0
gb|CW310303.1|CW310303 104_799_11469644_116_35746_074 Sorgh... 894 0.0
gb|AW924764.1|AW924764 WS1_72_G07.b1_A002 Water-stressed 1 ... 884 0.0
gb|CN124945.1|CN124945 RHOH1_7_H09.g1_A002 Acid- and alkali... 878 0.0
gb|BG412792.1|BG412792 OV2_34_H04.b1_A002 Ovary 2 (OV2) Sor... 815 0.0
gb|AW746435.1|AW746435 WS1_53_G03.b1_A002 Water-stressed 1 ... 779 0.0
gb|CW129319.1|CW129319 104_511_11114493_148_34762_091 Sorgh... 775 0.0
gb|CW454043.1|CW454043 fsbb001f198e23f0 Sorghum methylation... 765 0.0
gb|CW310304.1|CW310304 104_799_11469644_148_35750_074 Sorgh... 751 0.0
gb|CW454044.1|CW454044 fsbb001f198e23k0 Sorghum methylation... 751 0.0
gb|CW384483.1|CW384483 fsbb001f067i14f0 Sorghum methylation... 724 0.0
gb|CD227698.1|CD227698 CCC1_53_B08.b1_A007 Callus culture/c... 696 0.0
gb|BG240279.1|BG240279 OV1_20_A11.b1_A002 Ovary 1 (OV1) Sor... 684 0.0
gb|AW672027.1|AW672027 LG1_354_A12.b1_A002 Light Grown 1 (L... 676 0.0
gb|CW311468.1|CW311468 104_801_11470249_148_36282_015 Sorgh... 670 0.0
gb|BG158445.1|BG158445 FM1_60_F10.b1_A003 Floral-Induced Me... 656 0.0
gb|BE356582.1|BE356582 DG1_126_E06.b1_A002 Dark Grown 1 (DG... 650 0.0
gb|CN124864.1|CN124864 RHOH1_7_H09.b1_A002 Acid- and alkali... 648 0.0
gb|BE356628.1|BE356628 DG1_126_E06.g1_A002 Dark Grown 1 (DG... 634 e-180
gb|CF757933.1|CF757933 DSAF1_25_B11.g1_A011 Drought-stresse... 630 e-179
gb|BG051739.1|BG051739 FM1_60_F10.g1_A003 Floral-Induced Me... 626 e-178
gb|BG049446.1|BG049446 OV1_20_A11.g1_A002 Ovary 1 (OV1) Sor... 599 e-169
gb|CF490113.1|CF490113 POL1_62_C01.g1_A002 Pollen Sorghum b... 593 e-167
gb|CL187296.1|CL187296 104_402_10900781_116_32436_019 Sorgh... 585 e-165
gb|AW565949.1|AW565949 LG1_354_A12.g1_A002 Light Grown 1 (L... 555 e-156
gb|AW925050.1|AW925050 WS1_74_G10.b1_A002 Water-stressed 1 ... 555 e-156
gb|CD226182.1|CD226182 CCC1_44_A04.b1_A007 Callus culture/c... 555 e-156
gb|CF490031.1|CF490031 POL1_62_C01.b1_A002 Pollen Sorghum b... 549 e-154
gb|CL187762.1|CL187762 104_403_10901109_114_32459_085 Sorgh... 521 e-146
gb|AW747659.1|AW747659 WS1_74_G10.g1_A002 Water-stressed 1 ... 513 e-144
gb|BF704767.1|BF704767 FM1_51_C06.b1_A003 Floral-Induced Me... 509 e-142
gb|BG050143.1|BG050143 FM1_67_B12.b1_A003 Floral-Induced Me... 505 e-141
gb|AW924861.1|AW924861 WS1_72_G07.g1_A002 Water-stressed 1 ... 488 e-136
gb|CL165793.1|CL165793 104_361_10808905_114_31820_121 Sorgh... 458 e-127
gb|BE356499.1|BE356499 DG1_125_G10.g1_A002 Dark Grown 1 (DG... 389 e-106
gb|BQ656052.1|BQ656052 pRC0368 Sorghum halepense rhizome cD... 383 e-104
gb|CW311467.1|CW311467 104_801_11470249_116_36281_015 Sorgh... 365 5e-099
gb|BF656536.1|BF656536 FM1_51_C06.g1_A003 Floral-Induced Me... 349 3e-094
gb|CF772218.1|CF772218 DSBF1_30_H03.g1_A010 Drought-stresse... 345 5e-093
gb|CW375799.1|CW375799 fsbb001f053f11f0 Sorghum methylation... 343 2e-092
gb|BE366223.1|BE366223 PI1_31_A07.b2_A002 Pathogen induced ... 212 5e-053
gb|AI724349.1|AI724349 RHIZ1_33_B10.y2_A001 Rhizome1 (RHIZ1... 157 2e-036
gb|AW746508.1|AW746508 WS1_53_G03.g1_A002 Water-stressed 1 ... 155 9e-036
gb|CW308135.1|CW308135 104_796_11468509_116_35730_055 Sorgh... 135 9e-030
gb|BE356498.1|BE356498 DG1_125_G11.g1_A002 Dark Grown 1 (DG... 127 2e-027
gb|CN124944.1|CN124944 RHOH1_7_H08.g1_A002 Acid- and alkali... 117 2e-024
gb|BE356434.1|BE356434 DG1_125_G10.b1_A002 Dark Grown 1 (DG... 105 8e-021
gb|BZ332746.1|BZ332746 hx30d05.b1 WGS-SbicolorF (JM107 adap... 78 2e-012
gb|BE366283.1|BE366283 PI1_31_A07.g1_A002 Pathogen induced ... 74 3e-011
gb|AW671110.1|AW671110 LG1_329_E02.b1_A002 Light Grown 1 (L... 72 1e-010
gb|AW565819.1|AW565819 LG1_352_B02.g1_A002 Light Grown 1 (L... 62 1e-007
gb|CD431862.1|CD431862 ETH1_11_A05.g1_A002 Ethylene-treated... 48 0.002
gb|CW336952.1|CW336952 104_836_11483875_116_36110_072 Sorgh... 46 0.006
gb|CL162048.1|CL162048 104_354_10806144_114_31830_048 Sorgh... 40 0.38
gb|CL170550.1|CL170550 104_371_10813901_148_31790_221 Sorgh... 40 0.38
gb|CW150897.1|CW150897 104_551_11143655_116_36307_088 Sorgh... 40 0.38
gb|CW191706.1|CW191706 104_613_11178637_116_36935_049 Sorgh... 40 0.38
gb|CW191707.1|CW191707 104_613_11178637_148_36936_049 Sorgh... 40 0.38
gb|CW422972.1|CW422972 fsbb001f132i22f0 Sorghum methylation... 40 0.38
gb|CN138772.1|CN138772 OX1_13_G06.g1_A002 Oxidatively-stres... 40 0.38
>gb|CD227917.1|CD227917 CCC1_56_G05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_G05_A007 5', mRNA sequence
Length = 637
Score = 904 bits (456), Expect = 0.0
Identities = 517/538 (96%)
Strand = Plus / Minus
Query: 414 ccaatccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggt 473
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 577 ccaatccttcttaagcggacggtatctccacctngccgtcgtcaatctcctgctgcaggt 518
Query: 474 ccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctcct 533
|||||||||||| ||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct: 517 ccttggggtcctngccgtcgacggtgcatccgacactgacgcaggtgccgagaatctcct 458
Query: 534 tgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcga 593
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 457 tgacggtgccggccatttccttggccatggacctgggcctcatggtcttggcgatctcga 398
Query: 594 tgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 338
Query: 654 tctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacct 713
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 337 tctcgggctccttgagcgccttgatgacgagcgccgcggcggagggaacgacggagacct 278
Query: 714 tggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttgg 773
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tggcctgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttgg 218
Query: 774 ccgtctccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatct 833
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 217 ccgtctccttggcgatgtcctctccgatcttcttgggggagagaccgagcgggccgatct 158
Query: 834 tgggggccagcgaagacgctgcgccgacctcgccgccggtcacacggacgaacacctcca 893
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 157 tgggggccagcgacgacgccgcgccgacctcgccgccggtcacgcggacgaacacctcca 98
Query: 894 ccacctgcgacgggtcgagcttgggcggcatggctgcgggcgtgggagtggcggcggc 951
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 97 ccacctgcgacgggtcgagcttgggcggcatggctgctggcgtggaggtggcggcggc 40
>gb|CW310303.1|CW310303 104_799_11469644_116_35746_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469644, DNA
sequence
Length = 645
Score = 894 bits (451), Expect = 0.0
Identities = 502/519 (96%)
Strand = Plus / Plus
Query: 419 ccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttg 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ccttcttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttg 165
Query: 479 gggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacg 538
||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||
Sbjct: 166 gggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacg 225
Query: 539 gtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacg 598
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct: 226 gtgccggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacg 285
Query: 599 tcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctct 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcg 345
Query: 659 ggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcc 718
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 346 ggctccttgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcc 405
Query: 719 tgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtc 778
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtc 465
Query: 779 tccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggg 838
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 466 tccttggcgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggg 525
Query: 839 gccagcgaagacgctgcgccgacctcgccgccggtcacacggacgaacacctccaccacc 898
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 526 gccagcgacgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacc 585
Query: 899 tgcgacgggtcgagcttgggcggcatggctgcgggcgtg 937
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 586 tgcgacgggtcgagcttgggcggcatggctgctggcgtg 624
>gb|AW924764.1|AW924764 WS1_72_G07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 884 bits (446), Expect = 0.0
Identities = 506/526 (96%)
Strand = Plus / Minus
Query: 426 aagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 485
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 506
Query: 486 tgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgccgg 545
|||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 505 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 446
Query: 546 ccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcga 605
||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 445 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 386
Query: 606 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctcct 665
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 326
Query: 666 tgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggt 725
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 325 tgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggt 266
Query: 726 tctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttgg 785
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tctggacggtgagcttgacggtgacgcgggggcccttccagtccttggccgtctccttgg 206
Query: 786 cgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcg 845
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 cgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcg 146
Query: 846 aagacgctgcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacg 905
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 145 acgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacg 86
Query: 906 ggtcgagcttgggcggcatggctgcgggcgtgggagtggcggcggc 951
||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 85 ggtcgagcttgggcggcatggctgctggcgtggaggtggcggcggc 40
>gb|CN124945.1|CN124945 RHOH1_7_H09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H09_A002 5', mRNA sequence
Length = 792
Score = 878 bits (443), Expect = 0.0
Identities = 514/538 (95%)
Strand = Plus / Minus
Query: 414 ccaatccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggt 473
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 734 ccaatccttnttaagcggacggtatctccacctcgctgtcgtcaatctcctgctgcaggt 675
Query: 474 ccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctcct 533
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct: 674 ccttggggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctcct 615
Query: 534 tgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcga 593
||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 614 tgacggtgccggccatttcgttggccatggacctgggcctcatggtcttggcgatctcga 555
Query: 594 tgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 495
Query: 654 tctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacct 713
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 494 tctcgggctccttgagcgccttgatgacgagcgccgcggcggagggaccgacggagacct 435
Query: 714 tggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttgg 773
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggcctgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttgg 375
Query: 774 ccgtctccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatct 833
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 374 ccgtctcctcggcgatgtcctctccgatcttcttgggggagagaccgagcgggccgatct 315
Query: 834 tgggggccagcgaagacgctgcgccgacctcgccgccggtcacacggacgaacacctcca 893
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 314 tgggggccagcgacgacgccgcgccgacctcgccgccggtcacgcggacgaacacctcca 255
Query: 894 ccacctgcgacgggtcgagcttgggcggcatggctgcgggcgtgggagtggcggcggc 951
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 254 ccacctgcgacgggtcgagcttgggcggcatggctgctggcgtggaggtggcggcggc 197
>gb|BG412792.1|BG412792 OV2_34_H04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 815 bits (411), Expect = 0.0
Identities = 465/483 (96%)
Strand = Plus / Minus
Query: 469 caggtccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggat 528
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct: 510 caggtccttggggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaat 451
Query: 529 ctccttgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgat 588
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 450 ctccttgacggtgccggccatttccttggccatggacctgggcctcatggtcttggcgat 391
Query: 589 ctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcg 648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcg 331
Query: 649 gtccctctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacgga 708
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 330 gtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggaacgacgga 271
Query: 709 gaccttggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtc 768
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaccttggcctgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtc 211
Query: 769 cttggccgtctccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggcc 828
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 210 cttggccgtctccttggcgatgtcctctccgatcttcttgggggagagaccgagcgggcc 151
Query: 829 gatcttgggggccagcgaagacgctgcgccgacctcgccgccggtcacacggacgaacac 888
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 150 gatcttgggggccagcgacgacgccgcgccgacctcgccgccggtcacgcggacgaacac 91
Query: 889 ctccaccacctgcgacgggtcgagcttgggcggcatggctgcgggcgtgggagtggcggc 948
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 90 ctccaccacctgcgacgggtcgagcttgggcggcatggctgctggcgtggaggtggcggc 31
Query: 949 ggc 951
|||
Sbjct: 30 ggc 28
>gb|AW746435.1|AW746435 WS1_53_G03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 498
Score = 779 bits (393), Expect = 0.0
Identities = 447/465 (96%)
Strand = Plus / Minus
Query: 487 gccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgccggc 546
||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 498 gccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggc 439
Query: 547 caattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcgag 606
|| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct: 438 catttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgag 379
Query: 607 gctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctcctt 666
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 378 gctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcctt 319
Query: 667 gagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggtt 726
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 318 gagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggtt 259
Query: 727 ctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggc 199
Query: 787 gatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcga 846
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 198 gatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcga 139
Query: 847 agacgctgcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacgg 906
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 138 cgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgg 79
Query: 907 gtcgagcttgggcggcatggctgcgggcgtgggagtggcggcggc 951
|||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 78 gtcgagcttgggcggcatggctgctggcgtggaggtggcggcggc 34
>gb|CW129319.1|CW129319 104_511_11114493_148_34762_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114493, DNA
sequence
Length = 665
Score = 775 bits (391), Expect = 0.0
Identities = 445/463 (96%)
Strand = Plus / Plus
Query: 489 cgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgccggcca 548
||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1 cgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggcca 60
Query: 549 attccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcgaggc 608
||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct: 61 tttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggc 120
Query: 609 tgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctccttga 668
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 tgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttga 180
Query: 669 gcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttct 728
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 181 gcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttct 240
Query: 729 ggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcga 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcga 300
Query: 789 tgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcgaag 848
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 301 tgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacg 360
Query: 849 acgctgcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacgggt 908
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 361 acgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgggt 420
Query: 909 cgagcttgggcggcatggctgcgggcgtgggagtggcggcggc 951
|||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 421 cgagcttgggcggcatggctgctggcgtggaggtggcggcggc 463
>gb|CW454043.1|CW454043 fsbb001f198e23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e23, DNA
sequence
Length = 718
Score = 765 bits (386), Expect = 0.0
Identities = 440/458 (96%)
Strand = Plus / Minus
Query: 494 acggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgccggccaattcc 553
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct: 718 acggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggccatttcc 659
Query: 554 ttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcgaggctgatg 613
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 658 ttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatg 599
Query: 614 ttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctccttgagcgcc 673
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 598 ttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagcgcc 539
Query: 674 ttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctggacg 733
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 538 ttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctggacg 479
Query: 734 gtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcc 419
Query: 794 tctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgct 853
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 418 tctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgacgcc 359
Query: 854 gcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagc 913
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgggtcgagc 299
Query: 914 ttgggcggcatggctgcgggcgtgggagtggcggcggc 951
||||||||||||||||| ||||||| |||||||||||
Sbjct: 298 ttgggcggcatggctgctggcgtggaggtggcggcggc 261
>gb|CW310304.1|CW310304 104_799_11469644_148_35750_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469644, DNA
sequence
Length = 608
Score = 751 bits (379), Expect = 0.0
Identities = 427/443 (96%)
Strand = Plus / Minus
Query: 509 ctgacgcaggtaccgaggatctccttgacggtgccggccaattccttggccatggacctg 568
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 606 ctgacgcaggtgccgagaatctccttgacggtgccggccatttccttggccatggacctg 547
Query: 569 tgcctcatggtcctggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttg 628
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 546 ggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttg 487
Query: 629 atgttcttgaccttcttgcggtccctctctggctccttgagcgccttgatgacgagcgcc 688
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 486 atgttcttgaccttcttgcggtccctctcgggctccttgagcgccttgatgacgagcgcc 427
Query: 689 gcggcggaggggacgacggagaccttggcctgccggttctggacggtgagcttgacggtg 748
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 426 gcggcggagggaacgacggagaccttggcctgtcggttctggacggtgagcttgacggtg 367
Query: 749 acgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttg 307
Query: 809 ggggaaagaccgagcgggccgatcttgggggccagcgaagacgctgcgccgacctcgccg 868
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 306 ggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgccg 247
Query: 869 ccggtcacacggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggct 928
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccggtcacgcggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggct 187
Query: 929 gcgggcgtgggagtggcggcggc 951
|| ||||||| |||||||||||
Sbjct: 186 gctggcgtggaggtggcggcggc 164
>gb|CW454044.1|CW454044 fsbb001f198e23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e23, DNA
sequence
Length = 737
Score = 751 bits (379), Expect = 0.0
Identities = 424/439 (96%)
Strand = Plus / Plus
Query: 419 ccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttg 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ccttcttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttg 358
Query: 479 gggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacg 538
||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||
Sbjct: 359 gggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacg 418
Query: 539 gtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacg 598
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct: 419 gtgccggccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacg 478
Query: 599 tcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctct 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcg 538
Query: 659 ggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcc 718
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 539 ggctccttgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcc 598
Query: 719 tgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtc 778
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtc 658
Query: 779 tccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggg 838
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 659 tccttggcgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggg 718
Query: 839 gccagcgaagacgctgcgc 857
|||||||| ||||| ||||
Sbjct: 719 gccagcgacgacgccgcgc 737
>gb|CW384483.1|CW384483 fsbb001f067i14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067i14, DNA
sequence
Length = 660
Score = 724 bits (365), Expect = 0.0
Identities = 470/505 (93%)
Strand = Plus / Plus
Query: 426 aagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 485
||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 40 aagcggatgggatctcgacctcgccgtcatcaatctcctgttgcaggtccttggggtcct 99
Query: 486 tgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgccgg 545
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 100 tgccgtctacggtgcatccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 159
Query: 546 ccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcga 605
||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 160 ccatctccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 219
Query: 606 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctcct 665
|||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||
Sbjct: 220 ggctgatgttgccgctgtgcttaatgttcttgaccttcttcctgtccctctcgggctcct 279
Query: 666 tgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggt 725
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct: 280 tgagcgccttgatgacgagcgcggcggcggagggcacgacggagaccttggcctgcctgt 339
Query: 726 tctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttgg 785
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctgtaccgtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttgg 399
Query: 786 cgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcg 845
|||||||||| ||||||||||| ||||| || |||||||||||||||||||| ||||| |
Sbjct: 400 cgatgtcctcgccgatcttcttcggggagaggccgagcgggccgatcttgggcgccaggg 459
Query: 846 aagacgctgcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacg 905
| ||||| ||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 460 acgacgccgcgcccacctccccgcccgtcacgcggacgaagacctccaccacctgcgacg 519
Query: 906 ggtcgagcttgggcggcatggctgc 930
|||||||||| ||||||||||||||
Sbjct: 520 ggtcgagcttcggcggcatggctgc 544
>gb|CD227698.1|CD227698 CCC1_53_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_B08_A007 3', mRNA sequence
Length = 592
Score = 696 bits (351), Expect = 0.0
Identities = 387/399 (96%)
Strand = Plus / Minus
Query: 414 ccaatccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggt 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccaatccttcttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggt 340
Query: 474 ccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctcct 533
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct: 339 ccttggggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctcct 280
Query: 534 tgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcga 593
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 279 tgacggtgccggccatttccttggccatggacctgggcctcatggtcttggcgatctcga 220
Query: 594 tgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 160
Query: 654 tctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacct 713
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 159 tctcgggctccttgagcgccttgatgacgagcgccgcggcggagggaacgacggagacct 100
Query: 714 tggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttgg 773
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 tggcctgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttgg 40
Query: 774 ccgtctccttggcgatgtcctctccgatcttcttggggg 812
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ccgtctccttggcgatgtcctctccgatcttcttggggg 1
Score = 99.6 bits (50), Expect = 5e-019
Identities = 96/109 (88%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 212 tggtaacttcgattgtacctaggaatgttcataaaatttgacagaaattgtctc--agac 269
||||||||| |||||||||||||||||||||||||||||| ||||||| || || ||||
Sbjct: 579 tggtaactttgattgtacctaggaatgttcataaaatttgccagaaatagtttcaaagac 520
Query: 270 ttaaagcatgacaaagtttctaagcaaaactccgctgtgataacttcca 318
|| ||||||||||| ||||| ||||| ||||| | ||||||||| ||||
Sbjct: 519 tt-aagcatgacaatgtttcaaagcagaactctgttgtgataacgtcca 472
>gb|BG240279.1|BG240279 OV1_20_A11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 684 bits (345), Expect = 0.0
Identities = 459/497 (92%)
Strand = Plus / Minus
Query: 434 gggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtccttgccgtcg 493
|||||||| ||||| || || || |||||||||||||||||||||||||||||||| ||
Sbjct: 544 gggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtccttgccatca 485
Query: 494 acggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgccggccaattcc 553
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 484 acggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccggccatctcc 425
Query: 554 ttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcgaggctgatg 613
||||||||||||||| ||| ||||||| |||||||||||| | ||||||||||||||||
Sbjct: 424 ttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatg 365
Query: 614 ttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctccttgagcgcc 673
||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 364 ttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagcgcc 305
Query: 674 ttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctggacg 733
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 304 ttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgcacg 245
Query: 734 gtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcc 793
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 244 gtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcc 185
Query: 794 tctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgct 853
|| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct: 184 tcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgcc 125
Query: 854 gcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagc 913
|||||||||||||| || ||||| |||||||| |||||||||||||| || ||||| | |
Sbjct: 124 gcgccgacctcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtccaac 65
Query: 914 ttgggcggcatggctgc 930
|||||||||||||||||
Sbjct: 64 ttgggcggcatggctgc 48
>gb|AW672027.1|AW672027 LG1_354_A12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 558
Score = 676 bits (341), Expect = 0.0
Identities = 440/473 (93%)
Strand = Plus / Minus
Query: 458 atctcctgctgcaggtccttggggtccttgccgtcgacggtgcacccgacgctgacgcag 517
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 541 atctcctgctgcaggtccttggggtccttgccatcaacggtgcacccaacgctgacgcag 482
Query: 518 gtaccgaggatctccttgacggtgccggccaattccttggccatggacctgtgcctcatg 577
|| |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||
Sbjct: 481 gtcccgaggatctccttgacggtgccggccatctccttggccatggacctgggccgcatg 422
Query: 578 gtcctggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttg 637
||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 gtcttggcgatctcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttg 362
Query: 638 accttcttgcggtccctctctggctccttgagcgccttgatgacgagcgccgcggcggag 697
|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggag 302
Query: 698 gggacgacggagaccttggcctgccggttctggacggtgagcttgacggtgacgcggagg 757
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 301 ggcacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcggagg 242
Query: 758 cccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttgggggaaaga 817
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 241 cccttccagtccttggcggtctccttggcgatgtcctcaccgatcttcttcggggagaga 182
Query: 818 ccgagcgggccgatcttgggggccagcgaagacgctgcgccgacctcgccgccggtcaca 877
|||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||
Sbjct: 181 ccgagcgggccgatcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacg 122
Query: 878 cggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggctgc 930
|||||||| |||||||||||||| || ||||| | ||||||||||||||||||
Sbjct: 121 cggacgaagacctccaccacctgagatgggtccaacttgggcggcatggctgc 69
>gb|CW311468.1|CW311468 104_801_11470249_148_36282_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470249, DNA
sequence
Length = 694
Score = 670 bits (338), Expect = 0.0
Identities = 449/486 (92%)
Strand = Plus / Plus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 204 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 263
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 264 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 323
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 324 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 383
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 384 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 443
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 503
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 563
Query: 784 ggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccag 843
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 564 ggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccag 623
Query: 844 cgaagacgctgcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcga 903
||| ||||| |||||||||||||| || ||||| |||||||| |||||||||||||| ||
Sbjct: 624 cgacgacgccgcgccgacctcgcctcccgtcacgcggacgaagacctccaccacctgaga 683
Query: 904 cgggtc 909
|||||
Sbjct: 684 tgggtc 689
>gb|BG158445.1|BG158445 FM1_60_F10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 511
Score = 656 bits (331), Expect = 0.0
Identities = 430/463 (92%)
Strand = Plus / Minus
Query: 468 gcaggtccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgagga 527
|||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct: 511 gcaggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgagga 452
Query: 528 tctccttgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcga 587
||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||
Sbjct: 451 tctccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcga 392
Query: 588 tctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgc 647
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 391 tctcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcc 332
Query: 648 ggtccctctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacgg 707
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 331 tgtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacgg 272
Query: 708 agaccttggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagt 767
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 271 agaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagt 212
Query: 768 ccttggccgtctccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggc 827
||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 211 ccttggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggc 152
Query: 828 cgatcttgggggccagcgaagacgctgcgccgacctcgccgccggtcacacggacgaaca 887
|||||||||| |||||||| ||||| |||||||||||||| || ||||| |||||||| |
Sbjct: 151 cgatcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcggacgaaga 92
Query: 888 cctccaccacctgcgacgggtcgagcttgggcggcatggctgc 930
||||||||||||| || ||||| | ||||||||||||||||||
Sbjct: 91 cctccaccacctgagatgggtccaacttgggcggcatggctgc 49
>gb|BE356582.1|BE356582 DG1_126_E06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 650 bits (328), Expect = 0.0
Identities = 427/460 (92%)
Strand = Plus / Minus
Query: 471 ggtccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatct 530
||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 526 ggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatct 467
Query: 531 ccttgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatct 590
|||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||
Sbjct: 466 ccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatct 407
Query: 591 cgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggt 650
||| | ||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct: 406 cgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgt 347
Query: 651 ccctctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggaga 710
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 346 ccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggaga 287
Query: 711 ccttggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtcct 770
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcct 227
Query: 771 tggccgtctccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccga 830
|||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 226 tggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccga 167
Query: 831 tcttgggggccagcgaagacgctgcgccgacctcgccgccggtcacacggacgaacacct 890
||||||| |||||||| ||||| |||||||||||||| || ||||| |||||||| ||||
Sbjct: 166 tcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcggacgaagacct 107
Query: 891 ccaccacctgcgacgggtcgagcttgggcggcatggctgc 930
|||||||||| || ||||| | ||||||||||||||||||
Sbjct: 106 ccaccacctgagatgggtccaacttgggcggcatggctgc 67
>gb|CN124864.1|CN124864 RHOH1_7_H09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H09_A002 3', mRNA sequence
Length = 598
Score = 648 bits (327), Expect = 0.0
Identities = 387/407 (95%)
Strand = Plus / Minus
Query: 414 ccaatccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggt 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 407 ccaatccttcttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggt 348
Query: 474 ccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctcct 533
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct: 347 ccttggggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctcct 288
Query: 534 tgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcga 593
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 287 tgacggtgccggccatttccttggccatggacctgggcctcatggtcttggcgatctcga 228
Query: 594 tgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 653
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cgacctcgtcaaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 168
Query: 654 tctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacct 713
|||| ||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||
Sbjct: 167 tctcgggctccttgagcgccttgatgacaagcgccccggcggagggaacgacggaaacct 108
Query: 714 tggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttgg 773
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 107 tggcctgtcggttctggacggtgagcttgacggtgacccggaggcccttccagtccttgg 48
Query: 774 ccgtctccttggcgatgtcctctccgatcttcttgggggaaagaccg 820
||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 47 ccgtctccttggcgatgtcctctccaatcttcttgggggagagaccg 1
Score = 99.6 bits (50), Expect = 5e-019
Identities = 96/109 (88%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 212 tggtaacttcgattgtacctaggaatgttcataaaatttgacagaaattgtctc--agac 269
||||||||| |||||| ||||||||||||||||||||||| ||||||| || || ||||
Sbjct: 587 tggtaactttgattgttcctaggaatgttcataaaatttgccagaaatagtttcaaagac 528
Query: 270 ttaaagcatgacaaagtttctaagcaaaactccgctgtgataacttcca 318
|| ||||||||||| ||||| ||||||||||| | ||||||||| ||||
Sbjct: 527 tt-aagcatgacaatgtttcaaagcaaaactctgttgtgataacgtcca 480
>gb|BE356628.1|BE356628 DG1_126_E06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 633
Score = 634 bits (320), Expect = e-180
Identities = 413/444 (93%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 452 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 393
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 392 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 333
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 332 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 273
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 272 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 213
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 212 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 153
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 152 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 93
Query: 784 ggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccag 843
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 92 ggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccag 33
Query: 844 cgaagacgctgcgccgacctcgcc 867
||| ||||| ||||||||||||||
Sbjct: 32 cgacgacgccgcgccgacctcgcc 9
>gb|CF757933.1|CF757933 DSAF1_25_B11.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_B11_A011 3', mRNA sequence
Length = 580
Score = 630 bits (318), Expect = e-179
Identities = 411/442 (92%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 442 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 383
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 382 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 323
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 322 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 263
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 262 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 203
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 143
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 142 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 83
Query: 784 ggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccag 843
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 82 ggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccag 23
Query: 844 cgaagacgctgcgccgacctcg 865
||| ||||| ||||||||||||
Sbjct: 22 cgacgacgccgcgccgacctcg 1
>gb|BG051739.1|BG051739 FM1_60_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 576
Score = 626 bits (316), Expect = e-178
Identities = 412/444 (92%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 451 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 392
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 391 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 332
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||| ||
Sbjct: 331 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcctc 272
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 271 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 212
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 211 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 152
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 151 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 92
Query: 784 ggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccag 843
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 91 ggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccag 32
Query: 844 cgaagacgctgcgccgacctcgcc 867
||| ||||| ||||||||||||||
Sbjct: 31 cgacgacgccgcgccgacctcgcc 8
>gb|BG049446.1|BG049446 OV1_20_A11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 599 bits (302), Expect = e-169
Identities = 386/414 (93%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 416 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 357
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 356 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 297
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 296 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 237
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 236 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 177
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 176 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 117
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 116 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 57
Query: 784 ggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatcttggg 837
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 56 ggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttggg 3
>gb|CF490113.1|CF490113 POL1_62_C01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_C01_A002 5', mRNA sequence
Length = 715
Score = 593 bits (299), Expect = e-167
Identities = 468/516 (90%), Gaps = 9/516 (1%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcg-ccgtcgtcaatctcctgctgcaggtccttggggt 482
||||||||| |||||||| ||||| || || || |||||||||||||||||||||||||
Sbjct: 578 ttaagcggaggggatctcgacctcnaccatcatcgatctcctgctgcaggtccttggggt 519
Query: 483 ccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgc 542
||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 518 ccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgc 459
Query: 543 cggccaattccttggccatggacc-tgtgcct-catggtcctggcgatctcgatgacgt- 599
|||||| |||||||||||||||| || ||| ||||||| |||||||||||| | ||
Sbjct: 458 cggccatctccttggccatggaccctgggccggcatggtcttggcgatctcgacaatgtt 399
Query: 600 cgtcgagg--ctga-tgttgccgc--tgtgcttgatgttcttgaccttcttgcggtccct 654
|||||||| |||| ||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct: 398 cgtcgaggggctgaatgttgccccactgtgcttgatgttcttgaccttcttcctgtccct 339
Query: 655 ctctggctccttgagcgccttgatgacgagcgccgcggcggaggggacgacggagacctt 714
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 338 ctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggagacctt 279
Query: 715 ggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggc 774
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggc 219
Query: 775 cgtctccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatctt 834
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 218 ggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatctt 159
Query: 835 gggggccagcgaagacgctgcgccgacctcgccgccggtcacacggacgaacacctccac 894
||| |||||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||
Sbjct: 158 gggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcggacgaagacctccac 99
Query: 895 cacctgcgacgggtcgagcttgggcggcatggctgc 930
|||||| || ||||| | ||||||||||||||||||
Sbjct: 98 cacctgagatgggtccaacttgggcggcatggctgc 63
>gb|CL187296.1|CL187296 104_402_10900781_116_32436_019 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900781, DNA
sequence
Length = 648
Score = 585 bits (295), Expect = e-165
Identities = 325/335 (97%)
Strand = Plus / Plus
Query: 617 ccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctccttgagcgccttg 676
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagcgccttg 60
Query: 677 atgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctggacggtg 736
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 61 atgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctggacggtg 120
Query: 737 agcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctct 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctct 180
Query: 797 ccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgctgcg 856
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 181 ccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcg 240
Query: 857 ccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagcttg 916
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgggtcgagcttg 300
Query: 917 ggcggcatggctgcgggcgtgggagtggcggcggc 951
|||||||||||||| ||||||| |||||||||||
Sbjct: 301 ggcggcatggctgctggcgtggaggtggcggcggc 335
>gb|AW565949.1|AW565949 LG1_354_A12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 585
Score = 555 bits (280), Expect = e-156
Identities = 358/384 (93%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 386 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 327
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 326 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 267
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 266 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 207
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 206 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 147
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 146 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 87
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 86 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 27
Query: 784 ggcgatgtcctctccgatcttctt 807
|||||||||||| |||||||||||
Sbjct: 26 ggcgatgtcctcaccgatcttctt 3
>gb|AW925050.1|AW925050 WS1_74_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 555 bits (280), Expect = e-156
Identities = 358/384 (93%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 394 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 335
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 334 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 275
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 274 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 215
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 214 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 155
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 154 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 95
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 94 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 35
Query: 784 ggcgatgtcctctccgatcttctt 807
|||||||||||| |||||||||||
Sbjct: 34 ggcgatgtcctcaccgatcttctt 11
>gb|CD226182.1|CD226182 CCC1_44_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_A04_A007 3', mRNA sequence
Length = 623
Score = 555 bits (280), Expect = e-156
Identities = 358/384 (93%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 384 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 325
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 324 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 265
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 264 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 205
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 204 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 145
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 144 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 85
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 84 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 25
Query: 784 ggcgatgtcctctccgatcttctt 807
|||||||||||| |||||||||||
Sbjct: 24 ggcgatgtcctcaccgatcttctt 1
>gb|CF490031.1|CF490031 POL1_62_C01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_C01_A002 3', mRNA sequence
Length = 585
Score = 549 bits (277), Expect = e-154
Identities = 361/389 (92%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 389 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 330
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 329 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 270
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 269 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 210
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
|||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 209 caggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 150
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 149 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 90
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctt 783
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 89 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcctt 30
Query: 784 ggcgatgtcctctccgatcttcttggggg 812
|||||||||||| ||||||||||| ||||
Sbjct: 29 ggcgatgtcctcaccgatcttcttcgggg 1
>gb|CL187762.1|CL187762 104_403_10901109_114_32459_085 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901109, DNA
sequence
Length = 582
Score = 521 bits (263), Expect = e-146
Identities = 344/371 (92%)
Strand = Plus / Plus
Query: 560 atggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcgaggctgatgttgccg 619
||||||||| ||| ||||||| |||||||||||| | |||||||||||||||||||||
Sbjct: 1 atggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatgttgcca 60
Query: 620 ctgtgcttgatgttcttgaccttcttgcggtccctctctggctccttgagcgccttgatg 679
|||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 61 ctgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagcgccttgatg 120
Query: 680 acgagcgccgcggcggaggggacgacggagaccttggcctgccggttctggacggtgagc 739
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 acgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgcacggtgagc 180
Query: 740 ttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccg 799
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 181 ttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccg 240
Query: 800 atcttcttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgctgcgccg 859
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 241 atcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccg 300
Query: 860 acctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagcttgggc 919
|||||||| || ||||| |||||||| |||||||||||||| || ||||| | |||||||
Sbjct: 301 acctcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtccaacttgggc 360
Query: 920 ggcatggctgc 930
|||||||||||
Sbjct: 361 ggcatggctgc 371
>gb|AW747659.1|AW747659 WS1_74_G10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 555
Score = 513 bits (259), Expect = e-144
Identities = 334/359 (93%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 359 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 300
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 299 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 240
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 239 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 180
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 179 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 120
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccg 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 119 cttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccg 60
Query: 724 gttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcct 782
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 59 gttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcct 1
>gb|BF704767.1|BF704767 FM1_51_C06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 409
Score = 509 bits (257), Expect = e-142
Identities = 332/357 (92%)
Strand = Plus / Minus
Query: 574 catggtcctggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgtt 633
||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct: 405 catggtcttggcgatctcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgtt 346
Query: 634 cttgaccttcttgcggtccctctctggctccttgagcgccttgatgacgagcgccgcggc 693
|||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 345 cttgaccttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgccgcggc 286
Query: 694 ggaggggacgacggagaccttggcctgccggttctggacggtgagcttgacggtgacgcg 753
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 285 ggagggcacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcg 226
Query: 754 gaggcccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttggggga 813
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct: 225 gaggcccttccagtccttggcggtctccttggcgatgtcctcaccgatcttcttcgggga 166
Query: 814 aagaccgagcgggccgatcttgggggccagcgaagacgctgcgccgacctcgccgccggt 873
||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||
Sbjct: 165 gagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccgacctcgcctcccgt 106
Query: 874 cacacggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggctgc 930
||| |||||||| |||||||||||||| || ||||| | ||||||||||||||||||
Sbjct: 105 cacgcggacgaagacctccaccacctgagatgggtccaacttgggcggcatggctgc 49
>gb|BG050143.1|BG050143 FM1_67_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 394
Score = 505 bits (255), Expect = e-141
Identities = 332/358 (92%)
Strand = Plus / Minus
Query: 573 tcatggtcctggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgcttgatgt 632
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 394 tcatggtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttaatgt 335
Query: 633 tcttgaccttcttgcggtccctctctggctccttgagcgccttgatgacgagcgccgcgg 692
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 334 tcttgaccttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgcggcgg 275
Query: 693 cggaggggacgacggagaccttggcctgccggttctggacggtgagcttgacggtgacgc 752
||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 274 cggagggcacgacggagaccttggcctgcctgttctgtaccgtgagcttgacggtgacgc 215
Query: 753 ggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttggggg 812
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 214 ggaggcccttccagtccttcgccgtctccttggcgatgtcctcgccgatcttcttcgggg 155
Query: 813 aaagaccgagcgggccgatcttgggggccagcgaagacgctgcgccgacctcgccgccgg 872
| || |||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||| |
Sbjct: 154 agaggccgagcgggccgatcttgggcgccagggangacgccgcgcccacctccccgcccg 95
Query: 873 tcacacggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggctgc 930
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 94 tcacgcggacgaagacctccaccacctgcgacgggtcgagcttcggcggcatggctgc 37
>gb|AW924861.1|AW924861 WS1_72_G07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 490
Score = 488 bits (246), Expect = e-136
Identities = 276/286 (96%)
Strand = Plus / Minus
Query: 414 ccaatccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggt 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 288 ccaatccttcttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggt 229
Query: 474 ccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctcct 533
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct: 228 ccttggggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctcct 169
Query: 534 tgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcga 593
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 168 tgacggtgccggccatttccttggccatggacctgggcctcatggtcttggcgatctcga 109
Query: 594 tgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccc 49
Query: 654 tctctggctccttgagcgccttgatgacgagcgccgcggcggaggg 699
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 tctcgggctccttgagcgccttgatgacgagcgccgcggcggaggg 3
Score = 105 bits (53), Expect = 8e-021
Identities = 116/134 (86%), Gaps = 6/134 (4%)
Strand = Plus / Minus
Query: 187 aaaaattccaacaaaactcaggcactggtaacttcgattgtacctaggaatgttcataaa 246
|||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct: 490 aaaatttccaacaaaact---gcattggtaactttgattgtacctaggaatgttcataaa 434
Query: 247 atttgacagaaattgtctc--agacttaaagcatgacaaagtttctaagcaaaactccgc 304
||||| ||||||| || || |||||| ||||||||||| ||||| ||||| ||||| |
Sbjct: 433 atttgccagaaatagtttcaaagactt-aagcatgacaatgtttcaaagcagaactctgt 375
Query: 305 tgtgataacttcca 318
||||||||| ||||
Sbjct: 374 tgtgataacgtcca 361
>gb|CL165793.1|CL165793 104_361_10808905_114_31820_121 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808905, DNA
sequence
Length = 720
Score = 458 bits (231), Expect = e-127
Identities = 258/267 (96%)
Strand = Plus / Plus
Query: 685 cgccgcggcggaggggacgacggagaccttggcctgccggttctggacggtgagcttgac 744
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cgccgcggcggagggaacgacggagaccttggcctgtcggttctggacggtgagcttgac 60
Query: 745 ggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatctt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatctt 120
Query: 805 cttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgctgcgccgacctc 864
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 121 cttgggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctc 180
Query: 865 gccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagcttgggcggcat 924
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccgccggtcacgcggacgaacacctccaccacctgcgacgggtcgagcttgggcggcat 240
Query: 925 ggctgcgggcgtgggagtggcggcggc 951
|||||| ||||||| |||||||||||
Sbjct: 241 ggctgctggcgtggaggtggcggcggc 267
>gb|BE356499.1|BE356499 DG1_125_G10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 330
Score = 389 bits (196), Expect = e-106
Identities = 244/260 (93%)
Strand = Plus / Minus
Query: 426 aagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 485
||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 260 aagcggatgggatctcgacctcgccgtcatcaatctcctgttgcaggtccttggggtcct 201
Query: 486 tgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgccgg 545
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 200 tgccgtctacggtgcatccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 141
Query: 546 ccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtcga 605
||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 140 ccatctccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 81
Query: 606 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctcct 665
|||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||
Sbjct: 80 ggctgatgttgccgctgtgcttaatgttcttgaccttcttactgtccctctcgggctcct 21
Query: 666 tgagcgccttgatgacgagc 685
||||||||||||||||||||
Sbjct: 20 tgagcgccttgatgacgagc 1
>gb|BQ656052.1|BQ656052 pRC0368 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0368, mRNA sequence
Length = 461
Score = 383 bits (193), Expect = e-104
Identities = 268/293 (91%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 293 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 234
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 233 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 174
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 173 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 114
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||| ||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 113 gaggctgatattgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 54
Query: 664 cttgagcgccttgatgacgagcgccgcggcggaggggacgacggagaccttgg 716
||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 53 cttgagcgctttgatgacgagcgccgcggcggagggcacgacggagaccttgg 1
>gb|CW311467.1|CW311467 104_801_11470249_116_36281_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470249, DNA
sequence
Length = 702
Score = 365 bits (184), Expect = 5e-099
Identities = 238/256 (92%)
Strand = Plus / Minus
Query: 675 tgatgacgagcgccgcggcggaggggacgacggagaccttggcctgccggttctggacgg 734
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 696 tgatgacgagcgccgcggcggagggcacgacgtagaccttggcctgccggttctgcacgg 637
Query: 735 tgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcct 794
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 636 tgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcct 577
Query: 795 ctccgatcttcttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgctg 854
| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 576 caccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccg 517
Query: 855 cgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagct 914
||||||||||||| || ||||| |||||||| |||||||||||||| || ||||| | ||
Sbjct: 516 cgccgacctcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtccaact 457
Query: 915 tgggcggcatggctgc 930
||||||||||||||||
Sbjct: 456 tgggcggcatggctgc 441
>gb|BF656536.1|BF656536 FM1_51_C06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 460
Score = 349 bits (176), Expect = 3e-094
Identities = 242/264 (91%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 264 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 205
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 204 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgcc 145
Query: 544 ggccaattccttggccatggacctgtgcctcatggtcctggcgatctcgatgacgtcgtc 603
||||| |||||||||||||||||| ||| ||||||| |||||||||||| | ||||||
Sbjct: 144 ggccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtc 85
Query: 604 gaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctctggctc 663
||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 84 gaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctc 25
Query: 664 cttgagcgccttgatgacgagcgc 687
||||||||||||||||||||||||
Sbjct: 24 cttgagcgccttgatgacgagcgc 1
>gb|CF772218.1|CF772218 DSBF1_30_H03.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_30_H03_A010 3', mRNA sequence
Length = 421
Score = 345 bits (174), Expect = 5e-093
Identities = 213/226 (94%)
Strand = Plus / Minus
Query: 414 ccaatccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggt 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 226 ccaatccttcttaagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggt 167
Query: 474 ccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctcct 533
|||||||||||||||||||||||| ||| ||||| ||||||||||| |||| |||||||
Sbjct: 166 ccttggggtccttgccgtcgacggggcatccgacactgacgcaggtgccgaaaatctcct 107
Query: 534 tgacggtgccggccaattccttggccatggacctgtgcctcatggtcctggcgatctcga 593
|||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 106 tgacggggccggccatttccttggccatggacctgggcctcatggtcttggcgatctcga 47
Query: 594 tgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgac 639
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 46 cgacgtcgtcaaggctgatgttgccgctgtgcttgatgttcttgac 1
Score = 107 bits (54), Expect = 2e-021
Identities = 97/109 (88%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 212 tggtaacttcgattgtacctaggaatgttcataaaatttgacagaaattgtctc--agac 269
||||||||| |||||||||||||||||||||||||||||| ||||||| || || ||||
Sbjct: 406 tggtaactttgattgtacctaggaatgttcataaaatttgccagaaatagtttcaaagac 347
Query: 270 ttaaagcatgacaaagtttctaagcaaaactccgctgtgataacttcca 318
|| ||||||||||| ||||| ||||||||||| | ||||||||| ||||
Sbjct: 346 tt-aagcatgacaatgtttcaaagcaaaactctgttgtgataacgtcca 299
>gb|CW375799.1|CW375799 fsbb001f053f11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053f11, DNA
sequence
Length = 459
Score = 343 bits (173), Expect = 2e-092
Identities = 230/249 (92%)
Strand = Plus / Plus
Query: 682 gagcgccgcggcggaggggacgacggagaccttggcctgccggttctggacggtgagctt 741
|||||| ||||||||||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct: 1 gagcgcggcggcggagggcacgacggagaccttggcctgcctgttctgtaccgtgagctt 60
Query: 742 gacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgat 801
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 gacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctcgccgat 120
Query: 802 cttcttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgctgcgccgac 861
|||||| ||||| || |||||||||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 121 cttcttcggggagaggccgagcgggccgatcttgggcgccagggacgacgccgcgcccac 180
Query: 862 ctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagcttgggcgg 921
||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 181 ctccccgcccgtcacgcggacgaagacctccaccacctgcgacgggtcgagcttcggcgg 240
Query: 922 catggctgc 930
|||||||||
Sbjct: 241 catggctgc 249
>gb|BE366223.1|BE366223 PI1_31_A07.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 174
Score = 212 bits (107), Expect = 5e-053
Identities = 152/167 (91%)
Strand = Plus / Minus
Query: 743 acggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatc 802
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 174 acggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccgatc 115
Query: 803 ttcttgggggaaagaccgagcgggccgatcttgggggccagcgaagacgctgcgccgacc 862
|| || ||||| ||||||||||||||||||||||| |||||||| ||||| |||| ||||
Sbjct: 114 ttatttggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgcagacc 55
Query: 863 tcgccgccggtcacacggacgaacacctccaccacctgcgacgggtc 909
||||| || ||||| |||||||| |||||||||||||| || |||||
Sbjct: 54 tcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtc 8
>gb|AI724349.1|AI724349 RHIZ1_33_B10.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 335
Score = 157 bits (79), Expect = 2e-036
Identities = 109/119 (91%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct: 119 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtc 60
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgc 542
|||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 59 cttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgc 1
>gb|AW746508.1|AW746508 WS1_53_G03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 279
Score = 155 bits (78), Expect = 9e-036
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 414 ccaatccttcttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggt 473
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 95 ccaatccttcttaaacggacgggatctccacctcgccgtcgtcaatctcctgctgcaagt 36
Query: 474 ccttggggtccttgccgtcgacggtgcacccgac 507
|||||||||||||||||||||||| ||| |||||
Sbjct: 35 ccttggggtccttgccgtcgacggggcatccgac 2
Score = 99.6 bits (50), Expect = 5e-019
Identities = 96/109 (88%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 212 tggtaacttcgattgtacctaggaatgttcataaaatttgacagaaattgtctc--agac 269
||||||||| ||||| |||||||||||||||||||||||| ||||||| || || ||||
Sbjct: 275 tggtaactttgattggacctaggaatgttcataaaatttgccagaaatagtttcaaagac 216
Query: 270 ttaaagcatgacaaagtttctaagcaaaactccgctgtgataacttcca 318
|| ||||||||||| ||||| ||||||||||| | ||||||||| ||||
Sbjct: 215 tt-aagcatgacaatgtttcaaagcaaaactctgttgtgataacgtcca 168
>gb|CW308135.1|CW308135 104_796_11468509_116_35730_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468509, DNA
sequence
Length = 759
Score = 135 bits (68), Expect = 9e-030
Identities = 170/200 (85%), Gaps = 8/200 (4%)
Strand = Plus / Minus
Query: 123 taatcactaaccagacaaataaccaattggccatgcaatatagt--caaattttaaacat 180
|||||||||| || ||||| ||||| ||||||||||||||| |||| ||||||||
Sbjct: 258 taatcactaaacaagcaaatcaccaactggccatgcaatatataaccaaaatttaaacaa 199
Query: 181 cgcatgaaaaattccaacaaaactcaggcactggtaacttcgattgtacctaggaatgtt 240
||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 198 tgcatgaaaatttccaacaaaact---gcattggtaactttgattgtacctaggaatgtt 142
Query: 241 cataaaatttgacagaaattgtctc--agacttaaagcatgacaaagtttctaagcaaaa 298
||||||||||| ||||||| || || |||||| ||||||||||| ||||| ||||| ||
Sbjct: 141 cataaaatttgccagaaatagtttcaaagactt-aagcatgacaatgtttcaaagcagaa 83
Query: 299 ctccgctgtgataacttcca 318
||| | ||||||||| ||||
Sbjct: 82 ctctgttgtgataacgtcca 63
>gb|BE356498.1|BE356498 DG1_125_G11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 104
Score = 127 bits (64), Expect = 2e-027
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 523 gaggatctccttgacggtgccggccaattccttggccatggacctgtgcctcatggtcct 582
||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| | |
Sbjct: 104 gaggatctccttgacggagccggccatgtccttggccatggacctgagcctcatggactt 45
Query: 583 ggcgatctcgatgacgtcgtcgaggctgatgttgccgctgtgct 626
||||||||| | ||| || |||||||||||||||||||||||||
Sbjct: 44 ggcgatctcaacgacatcctcgaggctgatgttgccgctgtgct 1
>gb|CN124944.1|CN124944 RHOH1_7_H08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H08_A002 5', mRNA sequence
Length = 256
Score = 117 bits (59), Expect = 2e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 873 tcacacggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggctgcgg 932
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 256 tcacgcggacgaacccctccaccacctgcgacgggtcgagcttgggcggcatggctgctg 197
Query: 933 gcgtgggagtggcggcggc 951
|||||| |||||||||||
Sbjct: 196 gcgtggaggtggcggcggc 178
>gb|BE356434.1|BE356434 DG1_125_G10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 144
Score = 105 bits (53), Expect = 8e-021
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 854 gcgccgacctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagc 913
||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 135 gcgcccacctccccgcccgtcacgcggacgaagacctccaccacctgcgacgggtcgagc 76
Query: 914 ttgggcggcatggctgc 930
|| ||||||||||||||
Sbjct: 75 ttcggcggcatggctgc 59
>gb|BZ332746.1|BZ332746 hx30d05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx30d05 5', DNA sequence
Length = 458
Score = 77.8 bits (39), Expect = 2e-012
Identities = 109/131 (83%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 801 tcttcttgggggaaagaccgagcgggccgatcttgggggccagcgaaga-cgctgcgccg 859
||||||| ||| |||| || |||||||| |||||||||||||| ||| | ||| | |||
Sbjct: 1 tcttcttcgggaaaaggccaagcgggccaatcttgggggccagggaacaacgccgggccc 60
Query: 860 acctcgccgccggtcacacggacgaacacctccaccacctgcgacgggtcgagcttgggc 919
|| || ||||| || || ||||| || ||||||||||||||| ||||||| ||||| |||
Sbjct: 61 acttccccgcccgtaacgcggacaaaaacctccaccacctgcaacgggtcaagcttcggc 120
Query: 920 ggcatggctgc 930
|| ||||||||
Sbjct: 121 ggaatggctgc 131
>gb|BE366283.1|BE366283 PI1_31_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 124
Score = 73.8 bits (37), Expect = 3e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| ||||| || || || |||||||||||||||||||||||||
Sbjct: 65 ttaagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggta 6
Query: 484 cttgc 488
|||||
Sbjct: 5 cttgc 1
>gb|AW671110.1|AW671110 LG1_329_E02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 71.9 bits (36), Expect = 1e-010
Identities = 104/126 (82%), Gaps = 3/126 (2%)
Strand = Plus / Minus
Query: 715 ggcctgccggttctggacggtgagcttgacggtgacgcggaggcccttccagtccttggc 774
|||||| |||||||||| |||||||||||| || ||||| | ||| |||||||| | |
Sbjct: 246 ggcctgacggttctggatggtgagcttgacagtcacgcgcaagcctttccagtc---gcc 190
Query: 775 cgtctccttggcgatgtcctctccgatcttcttgggggaaagaccgagcgggccgatctt 834
|| ||||||| ||||| ||||||| |||||||||||| ||||| || || ||||||||
Sbjct: 189 agtggccttggcaatgtcttctccgaccttcttgggggacagaccaagaggaccgatctt 130
Query: 835 gggggc 840
|||||
Sbjct: 129 aggggc 124
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 621 tgtgcttgatgttcttgaccttcttgcg 648
|||||||||||||||| ||||||||||
Sbjct: 340 tgtgcttgatgttcttctccttcttgcg 313
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 325,964
Number of Sequences: 832831
Number of extensions: 325964
Number of successful extensions: 91189
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91086
Number of HSP's gapped (non-prelim): 90
length of query: 985
length of database: 491,359,669
effective HSP length: 20
effective length of query: 965
effective length of database: 474,703,049
effective search space: 458088442285
effective search space used: 458088442285
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)