BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804904.2.2
(798 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF071464.1|CF071464 FE1_13_E02.g1_A002 Iron-deficient se... 789 0.0
gb|CD429909.1|CD429909 ETH1_16_F11.b1_A002 Ethylene-treated... 775 0.0
gb|CD429957.1|CD429957 ETH1_16_F11.g1_A002 Ethylene-treated... 775 0.0
gb|BG049369.1|BG049369 OV1_19_B02.g1_A002 Ovary 1 (OV1) Sor... 755 0.0
gb|AW284103.1|AW284103 LG1_267_H05.g1_A002 Light Grown 1 (L... 640 0.0
gb|AW287207.2|AW287207 LG1_267_H05.b1_A002 Light Grown 1 (L... 624 e-177
gb|BG049371.1|BG049371 OV1_19_B04.g1_A002 Ovary 1 (OV1) Sor... 618 e-175
gb|BQ655982.1|BQ655982 pRC0201 Sorghum halepense rhizome cD... 589 e-166
gb|BG240198.1|BG240198 OV1_19_B02.b1_A002 Ovary 1 (OV1) Sor... 563 e-159
gb|BG240200.1|BG240200 OV1_19_B04.b1_A002 Ovary 1 (OV1) Sor... 543 e-153
gb|CF758316.1|CF758316 DSAF1_30_C04.g1_A011 Drought-stresse... 523 e-147
gb|BI141563.1|BI141563 IP1_54_A05.b1_A002 Immature pannicle... 505 e-141
gb|CF756543.1|CF756543 DSAF1_6_E06.b1_A011 Drought-stressed... 504 e-141
gb|CF759227.1|CF759227 DSAF1_42_E08.b1_A011 Drought-stresse... 504 e-141
gb|BI141217.1|BI141217 IP1_44_G02.b1_A002 Immature pannicle... 478 e-133
gb|BI141561.1|BI141561 IP1_54_A03.b1_A002 Immature pannicle... 478 e-133
gb|AW564981.1|AW564981 LG1_313_D01.b1_A002 Light Grown 1 (L... 474 e-132
gb|AW924401.1|AW924401 WS1_69_D08.b1_A002 Water-stressed 1 ... 474 e-132
gb|BE363727.1|BE363727 WS1_69_D08.g2_A002 Water-stressed 1 ... 474 e-132
gb|BG048579.1|BG048579 OV1_14_D09.b1_A002 Ovary 1 (OV1) Sor... 466 e-129
gb|BG048507.1|BG048507 OV1_14_D09.g2_A002 Ovary 1 (OV1) Sor... 464 e-129
gb|BI141301.1|BI141301 IP1_54_A05.g1_A002 Immature pannicle... 456 e-126
gb|CD207838.1|CD207838 HS1_35_D06.b1_A012 Heat-shocked seed... 450 e-125
gb|BI099634.1|BI099634 IP1_44_G02.g1_A002 Immature pannicle... 448 e-124
gb|CF756620.1|CF756620 DSAF1_6_E06.g1_A011 Drought-stressed... 448 e-124
gb|CF758631.1|CF758631 DSAF1_34_F07.g1_A011 Drought-stresse... 416 e-114
gb|BI141299.1|BI141299 IP1_54_A03.g1_A002 Immature pannicle... 337 9e-091
gb|AW924449.1|AW924449 WS1_69_D08.g1_A002 Water-stressed 1 ... 323 1e-086
gb|BE352900.1|BE352900 LG1_313_F01.g1_A002 Light Grown 1 (L... 319 2e-085
gb|CW094282.1|CW094282 104_457_11000221_116_37473_051 Sorgh... 190 1e-046
gb|BG239822.1|BG239822 OV1_29_D11.g1_A002 Ovary 1 (OV1) Sor... 174 8e-042
gb|AI723767.1|AI723767 RHIZ1_11_F12.y1_A001 Rhizome1 (RHIZ1... 155 7e-036
gb|CL196012.1|CL196012 104_421_10942777_116_32314_001 Sorgh... 135 7e-030
gb|CW140068.1|CW140068 104_530_11135584_116_34913_056 Sorgh... 135 7e-030
gb|CW328843.1|CW328843 104_825_11479523_116_35999_046 Sorgh... 135 7e-030
gb|CW328844.1|CW328844 104_825_11479523_148_36000_046 Sorgh... 135 7e-030
gb|CW501006.1|CW501006 fsbb001f296j14f0 Sorghum methylation... 135 7e-030
gb|CL196011.1|CL196011 104_421_10942777_114_32310_001 Sorgh... 111 1e-022
gb|CW501007.1|CW501007 fsbb001f296j14k0 Sorghum methylation... 103 2e-020
gb|CW119547.1|CW119547 104_496_11108830_148_34635_087 Sorgh... 92 9e-017
gb|CW094283.1|CW094283 104_457_11000221_148_37474_051 Sorgh... 62 8e-008
gb|CW119546.1|CW119546 104_496_11108830_116_34639_087 Sorgh... 48 0.001
gb|CW408842.1|CW408842 fsbb001f102o12k0 Sorghum methylation... 46 0.005
gb|CW419449.1|CW419449 fsbb001f124e24f0 Sorghum methylation... 46 0.005
gb|CW408841.1|CW408841 fsbb001f102o12f0 Sorghum methylation... 44 0.020
gb|CW222881.1|CW222881 104_658_11202611_116_37181_040 Sorgh... 42 0.077
gb|CW222882.1|CW222882 104_658_11202611_148_37182_040 Sorgh... 42 0.077
gb|CW246173.1|CW246173 104_707_11221233_116_35084_047 Sorgh... 42 0.077
gb|AW671109.1|AW671109 LG1_329_E03.b1_A002 Light Grown 1 (L... 42 0.077
gb|AW671520.1|AW671520 LG1_347_E12.b1_A002 Light Grown 1 (L... 42 0.077
gb|BE125059.1|BE125059 DG1_15_F10.b1_A002 Dark Grown 1 (DG1... 42 0.077
gb|BE357427.1|BE357427 DG1_15_F10.b2_A002 Dark Grown 1 (DG1... 42 0.077
gb|BE596531.1|BE596531 PI1_57_D03.b1_A002 Pathogen induced ... 42 0.077
gb|BE599929.1|BE599929 PI1_77_A02.b1_A002 Pathogen induced ... 42 0.077
gb|CF071973.1|CF071973 FE1_19_A12.g1_A002 Iron-deficient se... 42 0.077
gb|CF431479.1|CF431479 NIT1_7_H04.g1_A002 Nitrogen-deficien... 42 0.077
gb|CF489597.1|CF489597 POL1_58_B12.g1_A002 Pollen Sorghum b... 42 0.077
gb|CX607936.1|CX607936 ANR1_31_D08.g1_A002 Anaerobic roots ... 42 0.077
gb|CX622520.1|CX622520 GABR1_64_A08.g2_A002 GA- or brassino... 42 0.077
gb|CW167696.1|CW167696 104_577_11153738_148_36497_015 Sorgh... 40 0.30
gb|CW220147.1|CW220147 104_654_11197197_116_37149_085 Sorgh... 40 0.30
gb|CW332872.1|CW332872 104_830_11481643_116_36040_070 Sorgh... 40 0.30
gb|CW396135.1|CW396135 fsbb001f084h07k0 Sorghum methylation... 40 0.30
gb|CW424209.1|CW424209 fsbb001f134g21f0 Sorghum methylation... 40 0.30
gb|BF481287.1|BF481287 FM1_18_A11.g1_A003 Floral-Induced Me... 40 0.30
gb|CD235747.1|CD235747 SS1_37_C02.g1_A012 Salt-stressed see... 40 0.30
gb|CF485470.1|CF485470 POL1_31_E11.g1_A002 Pollen Sorghum b... 40 0.30
gb|CF485639.1|CF485639 POL1_32_E10.g1_A002 Pollen Sorghum b... 40 0.30
>gb|CF071464.1|CF071464 FE1_13_E02.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_13_E02_A002 5', mRNA sequence
Length = 649
Score = 789 bits (398), Expect = 0.0
Identities = 522/563 (92%), Gaps = 4/563 (0%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 135
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 195
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 196 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 255
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 315
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 316 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 375
Query: 373 ggagagcatcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggg 432
|||| ||| |||||||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 376 ggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagatcaagaggg 435
Query: 433 gtggtgctatcaggcaagagctcgccaagcttaagaaggcgtccacagcttaaggagtct 492
||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||
Sbjct: 436 gtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacggctt----agtct 491
Query: 493 ctttccgtgaatgtcatgttagagtttttggttatgagttggatcagcaattcgattgag 552
| ||| ||| ||| ||||||| ||||||||||| ||||||| |||||||||||||| |||
Sbjct: 492 ccttcagtggatggcatgttacagtttttggttctgagttgtatcagcaattcgatcgag 551
Query: 553 cgttgtcaaagccagagttaccaatatgttccctgtgaacccatttcaaactttatcaag 612
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 552 cgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttcaaactttgtcaag 611
Query: 613 cacgggtgtgctcaggatatttt 635
|| ||||||| || |||||||||
Sbjct: 612 catgggtgtgttctggatatttt 634
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 24 ccgcgcttcgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||||||||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 11 ccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgc 57
>gb|CD429909.1|CD429909 ETH1_16_F11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_F11_A002 3', mRNA sequence
Length = 602
Score = 775 bits (391), Expect = 0.0
Identities = 540/588 (91%), Gaps = 5/588 (0%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 67
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 127
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 128 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 187
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 247
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 248 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 307
Query: 373 ggagagcatcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggg 432
|||| ||| |||||||||||||||| |||||||| ||||||||||| |||| |||||||
Sbjct: 308 ggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagaccaagaggg 367
Query: 433 gtggtgctatcaggcaagagctcgccaagcttaagaaggcgtccacagcttaaggagtct 492
||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||
Sbjct: 368 gtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacggctt----agtct 423
Query: 493 ctttccgtgaatgtcatgttagagtttttggttatgagttggatcagcaattcgattgag 552
| ||| ||| ||| ||||||| ||||||||||| ||||||| |||||||||||||| |||
Sbjct: 424 ccttcagtggatggcatgttacagtttttggttctgagttgtatcagcaattcgatcgag 483
Query: 553 cgttgtcaaagccagagttaccaatatgttccctgtgaacccatttcaaactttatcaag 612
||||||||||||||| ||| |||||||| |||||||||||||| |||||||| |||||
Sbjct: 484 tgttgtcaaagccagaattagtaatatgtttcctgtgaacccattccaaactttgtcaag 543
Query: 613 cacgggtgtgctcaggatatttttgccatgaatgatatggaatatcta 660
|| ||||||| || ||||| ||||| | |||||| |||||||||||||
Sbjct: 544 catgggtgtgttctggata-ttttgtcgtgaatgttatggaatatcta 590
>gb|CD429957.1|CD429957 ETH1_16_F11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_F11_A002 5', mRNA sequence
Length = 694
Score = 775 bits (391), Expect = 0.0
Identities = 540/588 (91%), Gaps = 5/588 (0%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 148
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 208
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 209 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 268
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 328
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 329 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 388
Query: 373 ggagagcatcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggg 432
|||| ||| |||||||||||||||| |||||||| ||||||||||| |||| |||||||
Sbjct: 389 ggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagaccaagaggg 448
Query: 433 gtggtgctatcaggcaagagctcgccaagcttaagaaggcgtccacagcttaaggagtct 492
||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||
Sbjct: 449 gtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacggctt----agtct 504
Query: 493 ctttccgtgaatgtcatgttagagtttttggttatgagttggatcagcaattcgattgag 552
| ||| ||| ||| ||||||| ||||||||||| ||||||| |||||||||||||| |||
Sbjct: 505 ccttcagtggatggcatgttacagtttttggttctgagttgtatcagcaattcgatcgag 564
Query: 553 cgttgtcaaagccagagttaccaatatgttccctgtgaacccatttcaaactttatcaag 612
||||||||||||||| ||| |||||||| |||||||||||||| |||||||| |||||
Sbjct: 565 tgttgtcaaagccagaattagtaatatgtttcctgtgaacccattccaaactttgtcaag 624
Query: 613 cacgggtgtgctcaggatatttttgccatgaatgatatggaatatcta 660
|| ||||||| || ||||| ||||| | |||||| |||||||||||||
Sbjct: 625 catgggtgtgttctggata-ttttgtcgtgaatgttatggaatatcta 671
Score = 46.1 bits (23), Expect = 0.005
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 24 ccgcgcttcgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||||||||||| |||||| |||||||||||| ||| |||| ||||
Sbjct: 25 ccgcgcttcgccctctcgct-cagccgcttcacagcgtcgccgccgc 70
>gb|BG049369.1|BG049369 OV1_19_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 755 bits (381), Expect = 0.0
Identities = 508/550 (92%), Gaps = 4/550 (0%)
Strand = Plus / Plus
Query: 86 gttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggactatgg 145
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacggcaaggactatgg 60
Query: 146 ccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcccctga 205
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 ccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctga 120
Query: 206 tatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagattgacat 265
|||| ||||||||||| | ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 121 tatgatcaggtgccagataaacttcaagcgtctttcacttactgacatcaagattgacat 180
Query: 266 caaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtgaagac 325
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 181 caaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagac 240
Query: 326 caagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagcatcgct 385
||||||||||||||| |||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct: 241 caagtgggagaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgct 300
Query: 386 caatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgctatcag 445
|||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 301 caatgactttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcag 360
Query: 446 gcaagagctcgccaagcttaagaaggcgtccacagcttaaggagtctctttccgtgaatg 505
|||||||||||||||||| |||||||| ||||| |||| |||||| ||| ||| |||
Sbjct: 361 gcaagagctcgccaagctgaagaaggcatccacggctt----agtctccttcagtggatg 416
Query: 506 tcatgttagagtttttggttatgagttggatcagcaattcgattgagcgttgtcaaagcc 565
||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 417 gcatgttacagtttttggttctgagttgtatcagcaattcgatcgagtgttgtcaaagcc 476
Query: 566 agagttaccaatatgttccctgtgaacccatttcaaactttatcaagcacgggtgtgctc 625
||| ||| |||||||| ||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 477 agaattagtaatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttc 536
Query: 626 aggatatttt 635
|||||||||
Sbjct: 537 tggatatttt 546
>gb|AW284103.1|AW284103 LG1_267_H05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 640 bits (323), Expect = 0.0
Identities = 463/508 (91%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 153 gtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcccctgatatggtc 212
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 1 gtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctgatatgatc 60
Query: 213 aggtgccaggtgaacttcaagcggctctcacttactgacatcaagattgacatcaaacgt 272
||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 61 aggtgccagataaacttcaagcgtctttcacttactgacatcaagattgacatcaaacgt 120
Query: 273 gtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtgaagaccaagtgg 332
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagaccaagtgg 180
Query: 333 gagaacagctcatggggcaagaagctgattgtccagaagaggagagcatcgctcaatgac 392
|||||||| |||||||||||||||||||| || ||||||||||| ||| |||||||||||
Sbjct: 181 gagaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatgac 240
Query: 393 tttgataggttcaaagtcatgctggcgaagattaagaggggtggtgctatcaggcaagag 452
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 241 tttgacaggttcaaggtcatgctggcaaagatcaagaggggtggcgctatcaggcaagag 300
Query: 453 ctcgccaagcttaagaaggcgtccacagcttaaggagtctctttccgtgaatgtcatgtt 512
||||||||||| |||||||| ||||| |||| |||||| ||| ||| ||| ||||||
Sbjct: 301 ctcgccaagctgaagaaggcatccacggctt----agtctccttcagtggatggcatgtt 356
Query: 513 agagtttttggttatgagttggatcagcaattcgattgagcgttgtcaaagccagagtta 572
| ||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||
Sbjct: 357 acagtttttggttctgagttgtatcagcaattcgatcgagtgttgtcaaagccagaatta 416
Query: 573 ccaatatgttccctgtgaacccatttcaaactttatcaagcacgggtgtgctcaggatat 632
|||||||| ||||||||||||||||||||||| ||||||| ||||||| || |||||
Sbjct: 417 gtaatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggata- 475
Query: 633 ttttgccatgaatgatatggaatatcta 660
||||| | |||||| |||||||||||||
Sbjct: 476 ttttgtcgtgaatgttatggaatatcta 503
>gb|AW287207.2|AW287207 LG1_267_H05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 468
Score = 624 bits (315), Expect = e-177
Identities = 372/391 (95%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 136
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 196
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 197 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 256
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 316
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 317 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 376
Query: 373 ggagagcatcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggg 432
|||| ||| |||||||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 377 ggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagatcaagaggg 436
Query: 433 gtggtgctatcaggcaagagctcgccaagct 463
|||| ||||||||||||||||||||||||||
Sbjct: 437 gtggcgctatcaggcaagagctcgccaagct 467
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 24 ccgcgcttcgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||||||||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 12 ccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgc 58
>gb|BG049371.1|BG049371 OV1_19_B04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 474
Score = 618 bits (312), Expect = e-175
Identities = 424/461 (91%), Gaps = 4/461 (0%)
Strand = Plus / Plus
Query: 152 cgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcccctgatatggt 211
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1 cgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccctgatatgat 60
Query: 212 caggtgccaggtgaacttcaagcggctctcacttactgacatcaagattgacatcaaacg 271
|||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 61 caggtgccagataaacttcaagcgtctttcacttactgacatcaagattgacatcaaacg 120
Query: 272 tgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtgaagaccaagtg 331
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 tgtccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagaccaagtg 180
Query: 332 ggagaacagctcatggggcaagaagctgattgtccagaagaggagagcatcgctcaatga 391
||||||||| |||||||||||||||||||| || ||||||||||| ||| ||||||||||
Sbjct: 181 ggagaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatga 240
Query: 392 ctttgataggttcaaagtcatgctggcgaagattaagaggggtggtgctatcaggcaaga 451
|||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 241 ctttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaaga 300
Query: 452 gctcgccaagcttaagaaggcgtccacagcttaaggagtctctttccgtgaatgtcatgt 511
|||||||||||| |||||||| ||||| |||| |||||| ||| ||| ||| |||||
Sbjct: 301 gctcgccaagctgaagaaggcatccacggctt----agtctccttcagtggatggcatgt 356
Query: 512 tagagtttttggttatgagttggatcagcaattcgattgagcgttgtcaaagccagagtt 571
|| ||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||| ||
Sbjct: 357 tacagtttttggttctgagttgtatcagcaattcgatcgagtgttgtcaaagccagaatt 416
Query: 572 accaatatgttccctgtgaacccatttcaaactttatcaag 612
| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 417 agtaatatgtttcctgtgaacccatttcaaactttgtcaag 457
>gb|BQ655982.1|BQ655982 pRC0201 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0201, mRNA sequence
Length = 533
Score = 589 bits (297), Expect = e-166
Identities = 455/502 (90%), Gaps = 8/502 (1%)
Strand = Plus / Plus
Query: 135 aaggactatggccgtctcgt-cgtcatcgtcgatgtggtcgaccagaacagggcacttgt 193
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 2 aaggactatggccg-ctcgtgcgtcatcgtcgatgtggtcgaccataacagggcacttgt 60
Query: 194 ggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacat 253
||| |||||||||||| ||||||||||| | ||||||||||| || ||||||||||||||
Sbjct: 61 ggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgacat 120
Query: 254 caagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggc-gatggaggaag 312
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121 caagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcagatggaggaag 180
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 181 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 240
Query: 373 ggagagcatcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggg 432
|||| ||| |||||||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 241 ggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagatcaagaggg 300
Query: 433 gtggtgctatcaggcaagagctcgccaagcttaagaaggcgtccacagcttaaggagtct 492
|||||||||||| |||||||||||||||||| |||||||| ||||| |||| |||||
Sbjct: 301 gtggtgctatcacgcaagagctcgccaagctgaagaaggcatccacggctt----agtct 356
Query: 493 ctttccgtgaatgtcatgttagagtttttggttatgagttggatcagcaattcgattgag 552
| || ||| ||| ||||||| ||||||||||| ||||||| |||||||||||||| |||
Sbjct: 357 cctt-agtggatggcatgttacagtttttggttctgagttgtatcagcaattcgatcgag 415
Query: 553 cgttgtcaaagccagagttaccaatatgttccctgtgaacccatttcaaactttatcaag 612
||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 416 tgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttcaaactttgtcaag 475
Query: 613 cacgggtgtgctcaggatattt 634
|| |||||| || ||||||||
Sbjct: 476 catgggtgtattctggatattt 497
>gb|BG240198.1|BG240198 OV1_19_B02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 426
Score = 563 bits (284), Expect = e-159
Identities = 335/352 (95%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 133
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 193
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 194 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 253
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 313
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 314 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 373
Query: 373 ggagagcatcgctcaatgactttgataggttcaaagtcatgctggcgaagat 424
|||| ||| |||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 374 ggagggcagcgctcaatgactttgacaggttcaaggtcatgctggcaaagat 425
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 24 ccgcgcttcgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||||||||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 9 ccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgc 55
>gb|BG240200.1|BG240200 OV1_19_B04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 410
Score = 543 bits (274), Expect = e-153
Identities = 319/334 (95%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 133
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 193
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 194 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 253
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 313
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 314 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 373
Query: 373 ggagagcatcgctcaatgactttgataggttcaa 406
|||| ||| |||||||||||||||| ||||||||
Sbjct: 374 ggagggcagcgctcaatgactttgacaggttcaa 407
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 24 ccgcgcttcgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||||||||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 9 ccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgc 55
>gb|CF758316.1|CF758316 DSAF1_30_C04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_C04_A011 3', mRNA sequence
Length = 529
Score = 523 bits (264), Expect = e-147
Identities = 392/433 (90%), Gaps = 5/433 (1%)
Strand = Plus / Plus
Query: 228 ttcaagcggctctcacttactgacatcaagattgacatcaaacgtgtccccaagaagaca 287
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttcaagcgtctttcacttactgacatcaagattgacatcaaaagtgtccccaagaagaca 60
Query: 288 accctgatcaaggcgatggaggaagctgatgtgaagaccaagtgggagaacagctcatgg 347
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 61 accctgatcaaggcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatgg 120
Query: 348 ggcaagaagctgattgtccagaagaggagagcatcgctcaatgactttgataggttcaaa 407
|||||||||||||| || ||||||||||| ||| |||||||||||||||| ||||||||
Sbjct: 121 ggcaagaagctgatcgttcagaagaggagggcagcgctcaatgactttgacaggttcaag 180
Query: 408 gtcatgctggcgaagattaagaggggtggtgctatcaggcaagagctcgccaagcttaag 467
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 gtcatgctggcaaagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaag 240
Query: 468 aaggcgtccacagcttaaggagtctctttccgtgaatgtcatgttagagtttttggttat 527
||||| ||||| |||| |||||| ||| ||| ||| ||||||| ||||||||||| |
Sbjct: 241 aaggcatccacggctt----agtctccttcagtggatggcatgttacagtttttggttct 296
Query: 528 gagttggatcagcaattcgattgagcgttgtcaaagccagagttaccaatatgttccctg 587
|||||| |||||||||||||| ||| ||||||||||||||| ||| |||||||| ||||
Sbjct: 297 gagttgtatcagcaattcgatcgagtgttgtcaaagccagaattagtaatatgtttcctg 356
Query: 588 tgaacccatttcaaactttatcaagcacgggtgtgctcaggatatttttgccatgaatga 647
||||||||||||||||||| ||||||| ||||||| || ||||| ||||| | ||||||
Sbjct: 357 tgaacccatttcaaactttgtcaagcatgggtgtgttctggata-ttttgtcgtgaatgt 415
Query: 648 tatggaatatcta 660
|||||||||||||
Sbjct: 416 tatggaatatcta 428
>gb|BI141563.1|BI141563 IP1_54_A05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 368
Score = 505 bits (255), Expect = e-141
Identities = 291/303 (96%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 125
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 185
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 186 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 245
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 305
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaaga 372
|||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 306 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgatcgttcagaaga 365
Query: 373 gga 375
|||
Sbjct: 366 gga 368
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 32 cgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 9 cgccctctcgctccagccgcttcacagcgtcgccgccgc 47
>gb|CF756543.1|CF756543 DSAF1_6_E06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_E06_A011 5', mRNA sequence
Length = 427
Score = 504 bits (254), Expect = e-141
Identities = 351/383 (91%), Gaps = 4/383 (1%)
Strand = Plus / Plus
Query: 240 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 63
Query: 300 gcgatggaggaagctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctg 359
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 64 gcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctg 123
Query: 360 attgtccagaagaggagagcatcgctcaatgactttgataggttcaaagtcatgctggcg 419
|| || ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 124 atcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggca 183
Query: 420 aagattaagaggggtggtgctatcaggcaagagctcgccaagcttaagaaggcgtccaca 479
||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 184 aagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacg 243
Query: 480 gcttaaggagtctctttccgtgaatgtcatgttagagtttttggttatgagttggatcag 539
|||| |||||| ||| ||| ||| ||||||| ||||||||||| ||||||| |||||
Sbjct: 244 gctt----agtctccttcagtggatggcatgttacagtttttggttctgagttgtatcag 299
Query: 540 caattcgattgagcgttgtcaaagccagagttaccaatatgttccctgtgaacccatttc 599
||||||||| ||| ||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 300 caattcgatcgagtgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttc 359
Query: 600 aaactttatcaagcacgggtgtg 622
||||||| ||||||| |||||||
Sbjct: 360 aaactttgtcaagcatgggtgtg 382
>gb|CF759227.1|CF759227 DSAF1_42_E08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_42_E08_A011 5', mRNA sequence
Length = 389
Score = 504 bits (254), Expect = e-141
Identities = 351/383 (91%), Gaps = 4/383 (1%)
Strand = Plus / Plus
Query: 240 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 63
Query: 300 gcgatggaggaagctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctg 359
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 64 gcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctg 123
Query: 360 attgtccagaagaggagagcatcgctcaatgactttgataggttcaaagtcatgctggcg 419
|| || ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 124 atcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggca 183
Query: 420 aagattaagaggggtggtgctatcaggcaagagctcgccaagcttaagaaggcgtccaca 479
||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 184 aagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccacg 243
Query: 480 gcttaaggagtctctttccgtgaatgtcatgttagagtttttggttatgagttggatcag 539
|||| |||||| ||| ||| ||| ||||||| ||||||||||| ||||||| |||||
Sbjct: 244 gctt----agtctccttcagtggatggcatgttacagtttttggttctgagttgtatcag 299
Query: 540 caattcgattgagcgttgtcaaagccagagttaccaatatgttccctgtgaacccatttc 599
||||||||| ||| ||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 300 caattcgatcgagtgttgtcaaagccagaattagtaatatgtttcctgtgaacccatttc 359
Query: 600 aaactttatcaagcacgggtgtg 622
||||||| ||||||| |||||||
Sbjct: 360 aaactttgtcaagcatgggtgtg 382
>gb|BI141217.1|BI141217 IP1_44_G02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 478 bits (241), Expect = e-133
Identities = 277/289 (95%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ccgcgaggatgccgttcgagaggttcgtggagatcgggcgcgtggccctggtgaactacg 125
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gaaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 185
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 186 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 245
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcgagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 305
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctgat 361
|||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 306 ctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctgat 354
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 32 cgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 9 cgccctctcgctccagccgcttcacagcgtcgccgccgc 47
>gb|BI141561.1|BI141561 IP1_54_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 346
Score = 478 bits (241), Expect = e-133
Identities = 271/281 (96%)
Strand = Plus / Plus
Query: 73 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ccgcgaggatgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacg 125
Query: 133 ggaaggactatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 192
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gcaaggactatggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttg 185
Query: 193 tggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgaca 252
|||| |||||||||||| ||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 186 tggacgcccctgatatgatcaggtgccagataaacttcaagcgtctttcacttactgaca 245
Query: 253 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaag 305
Query: 313 ctgatgtgaagaccaagtgggagaacagctcatggggcaag 353
|||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 306 ctgacgtgaagaccaagtgggagaacagttcatggggcaag 346
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 32 cgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 9 cgccctctcgctccagccgcttcacagcgtcgccgccgc 47
>gb|AW564981.1|AW564981 LG1_313_D01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 474 bits (239), Expect = e-132
Identities = 353/391 (90%)
Strand = Plus / Plus
Query: 81 atgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggac 140
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 31 atgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggag 90
Query: 141 tatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcc 200
|||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 91 tatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgcc 150
Query: 201 cctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagatt 260
||||| |||||| | ||||| |||||||||||||||| || || ||||| |||||||||
Sbjct: 151 cctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagatt 210
Query: 261 gacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtg 320
||||| ||||||||||| |||||||| || |||| ||||| ||||||||||||||||||
Sbjct: 211 gacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgtg 270
Query: 321 aagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagca 380
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 271 aaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagca 330
Query: 381 tcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgct 440
||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 331 tcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgcc 390
Query: 441 atcaggcaagagctcgccaagcttaagaagg 471
|||||||||||||| || |||||||| ||||
Sbjct: 391 atcaggcaagagcttgctaagcttaaaaagg 421
>gb|AW924401.1|AW924401 WS1_69_D08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 615
Score = 474 bits (239), Expect = e-132
Identities = 353/391 (90%)
Strand = Plus / Plus
Query: 81 atgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggac 140
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 57 atgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggag 116
Query: 141 tatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcc 200
|||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 117 tatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgcc 176
Query: 201 cctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagatt 260
||||| |||||| | ||||| |||||||||||||||| || || ||||| |||||||||
Sbjct: 177 cctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagatt 236
Query: 261 gacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtg 320
||||| ||||||||||| |||||||| || |||| ||||| ||||||||||||||||||
Sbjct: 237 gacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgtg 296
Query: 321 aagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagca 380
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 297 aaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagca 356
Query: 381 tcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgct 440
||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 357 tcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgcc 416
Query: 441 atcaggcaagagctcgccaagcttaagaagg 471
|||||||||||||| || |||||||| ||||
Sbjct: 417 atcaggcaagagcttgctaagcttaaaaagg 447
>gb|BE363727.1|BE363727 WS1_69_D08.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 591
Score = 474 bits (239), Expect = e-132
Identities = 353/391 (90%)
Strand = Plus / Plus
Query: 81 atgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggac 140
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 57 atgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggag 116
Query: 141 tatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcc 200
|||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 117 tatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgcc 176
Query: 201 cctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagatt 260
||||| |||||| | ||||| |||||||||||||||| || || ||||| |||||||||
Sbjct: 177 cctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagatt 236
Query: 261 gacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtg 320
||||| ||||||||||| |||||||| || |||| ||||| ||||||||||||||||||
Sbjct: 237 gacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgtg 296
Query: 321 aagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagca 380
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 297 aaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagca 356
Query: 381 tcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgct 440
||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 357 tcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgcc 416
Query: 441 atcaggcaagagctcgccaagcttaagaagg 471
|||||||||||||| || |||||||| ||||
Sbjct: 417 atcaggcaagagcttgctaagcttaaaaagg 447
>gb|BG048579.1|BG048579 OV1_14_D09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 466 bits (235), Expect = e-129
Identities = 352/391 (90%)
Strand = Plus / Plus
Query: 81 atgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggac 140
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 53 atgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggag 112
Query: 141 tatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcc 200
|||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 113 tatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgcc 172
Query: 201 cctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagatt 260
||||| |||||| | ||||| |||||||||||||||| || || ||||| |||||||||
Sbjct: 173 cctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagatt 232
Query: 261 gacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtg 320
||||| ||||||||||| |||||||| || ||| ||||| ||||||||||||||||||
Sbjct: 233 gacattaaacgtgtcccaaagaagactacattgagtaaggcaatggaggaagctgatgtg 292
Query: 321 aagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagca 380
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 293 aaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagca 352
Query: 381 tcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgct 440
||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 353 tcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgcc 412
Query: 441 atcaggcaagagctcgccaagcttaagaagg 471
|||||||||||||| || |||||||| ||||
Sbjct: 413 atcaggcaagagcttgctaagcttaaaaagg 443
>gb|BG048507.1|BG048507 OV1_14_D09.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 426
Score = 464 bits (234), Expect = e-129
Identities = 339/374 (90%)
Strand = Plus / Plus
Query: 81 atgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggac 140
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 53 atgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggag 112
Query: 141 tatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcc 200
|||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 113 tatggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgcc 172
Query: 201 cctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagatt 260
||||| |||||| | ||||| |||||||||||||||| || || ||||| |||||||||
Sbjct: 173 cctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagatt 232
Query: 261 gacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtg 320
||||| ||||||||||| |||||||| || |||| ||||| ||||||||||||||||||
Sbjct: 233 gacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatgtg 292
Query: 321 aagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagca 380
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 293 aaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagca 352
Query: 381 tcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgct 440
||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 353 tcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgcc 412
Query: 441 atcaggcaagagct 454
||||||||||||||
Sbjct: 413 atcaggcaagagct 426
>gb|BI141301.1|BI141301 IP1_54_A05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 393
Score = 456 bits (230), Expect = e-126
Identities = 349/387 (90%), Gaps = 5/387 (1%)
Strand = Plus / Plus
Query: 274 tccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtgaagaccaagtggg 333
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tccccaagaagacaaccctgatcaaggcgatggaggaagctgacgtgaagaccaagtggg 60
Query: 334 agaacagctcatggggcaagaagctgattgtccagaagaggagagcatcgctcaatgact 393
||||||| |||||||||||||||||||| || ||||||||||| ||| ||||||||||||
Sbjct: 61 agaacagttcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatgact 120
Query: 394 ttgataggttcaaagtcatgctggcgaagattaagaggggtggtgctatcaggcaagagc 453
|||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 121 ttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaagagc 180
Query: 454 tcgccaagcttaagaaggcgtccacagcttaaggagtctctttccgtgaatgtcatgtta 513
|||||||||| |||||||| ||||| |||| |||||| ||| ||| ||| |||||||
Sbjct: 181 tcgccaagctgaagaaggcatccacggctt----agtctccttcagtggatggcatgtta 236
Query: 514 gagtttttggttatgagttggatcagcaattcgattgagcgttgtcaaagccagagttac 573
||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||
Sbjct: 237 cagtttttggttctgagttgtatcagcaattcgatcgagtgttgtcaaagccagaattag 296
Query: 574 caatatgttccctgtgaacccatttcaaactttatcaagcacgggtgtgctcaggatatt 633
|||||||| ||||||||||||||||||||||| ||||||| ||||||| || ||||| |
Sbjct: 297 taatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggata-t 355
Query: 634 tttgccatgaatgatatggaatatcta 660
|||| | |||||| |||||||||||||
Sbjct: 356 tttgtcgtgaatgttatggaatatcta 382
>gb|CD207838.1|CD207838 HS1_35_D06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_35_D06_A012 3', mRNA sequence
Length = 596
Score = 450 bits (227), Expect = e-125
Identities = 350/391 (89%)
Strand = Plus / Plus
Query: 81 atgccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggac 140
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 9 atgccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggag 68
Query: 141 tatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcc 200
|||||||| || |||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct: 69 tatggccgccttgtcgtcatggtcgacgtcgtcgaccagaacagggctcttgtggatgcc 128
Query: 201 cctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagatt 260
||||| |||||| | ||||| |||||||||||||||| || || ||||| |||||||||
Sbjct: 129 cctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaagatt 188
Query: 261 gacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtg 320
||||| ||||||||||| |||||| | || |||| ||||| ||||||||||||||||||
Sbjct: 189 gacattaaacgtgtcccaaagaagcctacattgattaaggcaatggaggaagctgatgtg 248
Query: 321 aagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagca 380
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 aaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagagca 308
Query: 381 tcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgct 440
||| ||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 309 tcgttcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtgcc 368
Query: 441 atcaggcaagagctcgccaagcttaagaagg 471
|||||||||||||| || |||||||| ||||
Sbjct: 369 atcaggcaagagcttgctaagcttaaaaagg 399
>gb|BI099634.1|BI099634 IP1_44_G02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 395
Score = 448 bits (226), Expect = e-124
Identities = 352/391 (90%), Gaps = 6/391 (1%)
Strand = Plus / Plus
Query: 271 gtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgat-gtgaagaccaag 329
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 5 gtgtccccaagaagacaaccttgatcaaggcgatggaggaagctgatcgtgaagaccaag 64
Query: 330 tgggagaacagctcatggggcaagaagctgattgtccagaagaggagagcatcgctcaat 389
||||||||||| ||||||||||||||| |||| || ||||||||||| ||| ||||||||
Sbjct: 65 tgggagaacagttcatggggcaagaagttgatcgttcagaagaggagggcagcgctcaat 124
Query: 390 gactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgctatcaggcaa 449
|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 125 gactttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaa 184
Query: 450 gagctcgccaagcttaagaaggcgtccacagcttaaggagtctctttccgtgaatgtcat 509
|||||||||||||| |||||||| ||||| |||| |||||| ||| ||| ||| |||
Sbjct: 185 gagctcgccaagctgaagaaggcatccacggctt----agtctccttcagtggatggcat 240
Query: 510 gttagagtttttggttatgagttggatcagcaattcgattgagcgttgtcaaagccagag 569
|||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct: 241 gttacagtttttggttatgagttgtatcagcaattcgatcgagtgttgtcaaagccagaa 300
Query: 570 ttaccaatatgttccctgtgaacccatttcaaactttatcaagcacgggtgtgctcagga 629
||| |||||||| ||||||||||||||||||||||| ||||||| ||||||| || |||
Sbjct: 301 ttagtaatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttcggga 360
Query: 630 tatttttgccatgaatgatatggaatatcta 660
|| ||||| | |||||| |||||||||||||
Sbjct: 361 ta-ttttgtcgtgaatgttatggaatatcta 390
>gb|CF756620.1|CF756620 DSAF1_6_E06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_E06_A011 3', mRNA sequence
Length = 391
Score = 448 bits (226), Expect = e-124
Identities = 340/375 (90%), Gaps = 6/375 (1%)
Strand = Plus / Plus
Query: 240 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tcacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaag 63
Query: 300 gcgatggaggaagctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctg 359
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 64 gcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaagaagctg 123
Query: 360 attgtccagaagaggagagcatcgctcaatgactttgataggttcaaagtcatgctggcg 419
|| || ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 124 atcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatgctggca 183
Query: 420 aagattaagaggggtggtgctatcaggcaagagctcgccaagcttaagaaggcgtccaca 479
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct: 184 aagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggcatccccg 243
Query: 480 gcttaaggagtctctttccgtgaatgtcatgttagagtttttggttatgagttggatcag 539
|||| ||| || ||| ||| ||| ||||||| ||||||||||| ||||||| |||||
Sbjct: 244 gctt----agtttccttcagtggatggcatgttacagtttttggttttgagttgtatcag 299
Query: 540 caattcgat-tgagcgttgtcaaagccag-agttaccaatatgttccctgtgaacccatt 597
||||||||| ||| |||||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 300 caattcgatcggagtgttgtcaaagccagaaattagtaatatgtttcctgtgaacccatt 359
Query: 598 tcaaactttatcaag 612
||||||||| |||||
Sbjct: 360 tcaaactttgtcaag 374
>gb|CF758631.1|CF758631 DSAF1_34_F07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_34_F07_A011 3', mRNA sequence
Length = 463
Score = 416 bits (210), Expect = e-114
Identities = 329/367 (89%), Gaps = 5/367 (1%)
Strand = Plus / Plus
Query: 294 atcaaggcgatggaggaagctgatgtgaagaccaagtgggagaacagctcatggggcaag 353
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1 atcaaggcgatggaggaagctgacgtgaagaccaagtgggagaacagttcatggggcaag 60
Query: 354 aagctgattgtccagaagaggagagcatcgctcaatgactttgataggttcaaagtcatg 413
|||||||| || ||||||||||| ||| |||||||||||||||| |||||||| ||||||
Sbjct: 61 aagctgatcgttcagaagaggagggcagcgctcaatgactttgacaggttcaaggtcatg 120
Query: 414 ctggcgaagattaagaggggtggtgctatcaggcaagagctcgccaagcttaagaaggcg 473
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 ctggcaaagatcaagaggggtggtgctatcaggcaagagctcgccaagctgaagaaggca 180
Query: 474 tccacagcttaaggagtctctttccgtgaatgtcatgttagagtttttggttatgagttg 533
||||| |||| |||||| ||| ||| ||| ||||||| ||||||||||| |||||||
Sbjct: 181 tccacggctt----agtctccttcagtggatggcatgttacagtttttggttctgagttg 236
Query: 534 gatcagcaattcgattgagcgttgtcaaagccagagttaccaatatgttccctgtgaacc 593
|||||||||||||| ||| ||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 237 tatcagcaattcgatcgagtgttgtcaaagccagaattagtaatatgtttcctgtgaacc 296
Query: 594 catttcaaactttatcaagcacgggtgtgctcaggatatttttgccatgaatgatatgga 653
||||||||||||| ||||||| ||||||| || ||||| ||||| | |||||| ||||||
Sbjct: 297 catttcaaactttgtcaagcatgggtgtgttctggata-ttttgtcgtgaatgttatgga 355
Query: 654 atatcta 660
|||||||
Sbjct: 356 atatcta 362
>gb|BI141299.1|BI141299 IP1_54_A03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 329
Score = 337 bits (170), Expect = 9e-091
Identities = 283/319 (88%), Gaps = 5/319 (1%)
Strand = Plus / Plus
Query: 342 tcatggggcaagaagctgattgtccagaagaggagagcatcgctcaatgactttgatagg 401
|||||||||||||||||||| || ||||||||||| ||| |||||||||||||||| |||
Sbjct: 2 tcatggggcaagaagctgatcgttcagaagaggagggcagcgctcaatgactttgacagg 61
Query: 402 ttcaaagtcatgctggcgaagattaagaggggtggtgctatcaggcaagagctcgccaag 461
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttcaaggtcatgctggcaaagatcaagaggggtggtgctatcaggcaagagctcgccaag 121
Query: 462 cttaagaaggcgtccacagcttaaggagtctctttccgtgaatgtcatgttagagttttt 521
|| |||||||| ||||| |||| |||||| ||| ||| ||| ||||||| |||||||
Sbjct: 122 ctgaagaaggcatccacggctt----agtctccttcagtggatggcatgttacagttttt 177
Query: 522 ggttatgagttggatcagcaattcgattgagcgttgtcaaagccagagttaccaatatgt 581
|||| ||||||| |||||||||||||| ||| ||||||||||||||| ||| |||||||
Sbjct: 178 ggttctgagttgtatcagcaattcgatcgagtgttgtcaaagccagaattagtaatatgt 237
Query: 582 tccctgtgaacccatttcaaactttatcaagcacgggtgtgctcaggatatttttgccat 641
| ||||||||||||||||||||||| ||||||| ||||||| || ||||| ||||| | |
Sbjct: 238 ttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggata-ttttgtcgt 296
Query: 642 gaatgatatggaatatcta 660
||||| |||||||||||||
Sbjct: 297 gaatgttatggaatatcta 315
>gb|AW924449.1|AW924449 WS1_69_D08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 472
Score = 323 bits (163), Expect = 1e-086
Identities = 259/291 (89%)
Strand = Plus / Plus
Query: 181 acagggcacttgtggatgcccctgatatggtcaggtgccaggtgaacttcaagcggctct 240
||||||| ||||||||||||||||| |||||| | ||||| |||||||||||||||| |
Sbjct: 1 acagggctcttgtggatgcccctgacatggtccgttgccaaatgaacttcaagcggcttt 60
Query: 241 cacttactgacatcaagattgacatcaaacgtgtccccaagaagacaaccctgatcaagg 300
| || | ||| |||||||||||||| ||||||||||| |||||||| || |||| ||||
Sbjct: 61 ccctgagtgatatcaagattgacattaaacgtgtcccaaagaagactacattgattaagg 120
Query: 301 cgatggaggaagctgatgtgaagaccaagtgggagaacagctcatggggcaagaagctga 360
| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 121 caatggaggaagttgatgtgaaaaccaagtgggagaatagctcatggggcaagaagctga 180
Query: 361 ttgtccagaagaggagagcatcgctcaatgactttgataggttcaaagtcatgctggcga 420
|||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 181 ttgtgcagaagaggagagcatcgctcaatgactttgacaggttcaagatcatgttggcga 240
Query: 421 agattaagaggggtggtgctatcaggcaagagctcgccaagcttaagaagg 471
|||| |||||||||||||| |||||||||||||| | |||||||| ||||
Sbjct: 241 agatcaagaggggtggtgccatcaggcaagagcttgttaagcttaaaaagg 291
>gb|BE352900.1|BE352900 LG1_313_F01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 458
Score = 319 bits (161), Expect = 2e-085
Identities = 245/273 (89%)
Strand = Plus / Plus
Query: 199 cccctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaaga 258
||||||| |||||| | ||||| |||||||||||||||| || || ||||| |||||||
Sbjct: 1 cccctgacatggtccgttgccaaatgaacttcaagcggctttccctgactgatatcaaga 60
Query: 259 ttgacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatg 318
||||||| ||||||||||| |||||||| || |||| ||||| ||||||||||||||||
Sbjct: 61 ttgacattaaacgtgtcccaaagaagactacattgattaaggcaatggaggaagctgatg 120
Query: 319 tgaagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagag 378
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 tgaaaaccaagtgggagaatagctcatggggcaagaagctgattgtgcagaagaggagag 180
Query: 379 catcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtg 438
||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||
Sbjct: 181 catcgctcaatgactttgacaggttcaagatcatgttggcgaagatcaagaggggtggtg 240
Query: 439 ctatcaggcaagagctcgccaagcttaagaagg 471
| |||||||||||||| || |||||||| ||||
Sbjct: 241 ccatcaggcaagagcttgctaagcttaaaaagg 273
>gb|CW094282.1|CW094282 104_457_11000221_116_37473_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000221, DNA
sequence
Length = 690
Score = 190 bits (96), Expect = 1e-046
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 437 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacggcaaggacta 378
Query: 143 tggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 186
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 tggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 334
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 24 ccgcgcttcgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||||||||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 612 ccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgc 566
>gb|BG239822.1|BG239822 OV1_29_D11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 195
Score = 174 bits (88), Expect = 8e-042
Identities = 170/197 (86%), Gaps = 4/197 (2%)
Strand = Plus / Plus
Query: 386 caatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgctatcag 445
||||| |||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1 caatgcctttgacaggttcaaggtcatgctggcaaagatcaagaggggtggtgctatcag 60
Query: 446 gcaagagctcgccaagcttaagaaggcgtccacagcttaaggagtctctttccgtgaatg 505
|||||||||||||||| | |||||||| ||| | | || ||| |||||| ||| |||
Sbjct: 61 gcaagagctcgccaagatgaagaaggcatccgcggttt----agtttctttcagtggatg 116
Query: 506 tcatgttagagtttttggttatgagttggatcagcaattcgattgagcgttgtcaaagcc 565
||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 117 gcatgttacagtttttggttgtgagttgtatcagcaattcgatcgagtgttgtcaaagcc 176
Query: 566 agagttaccaatatgtt 582
||| ||| ||||||||
Sbjct: 177 agaattagtaatatgtt 193
>gb|AI723767.1|AI723767 RHIZ1_11_F12.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 201
Score = 155 bits (78), Expect = 7e-036
Identities = 136/154 (88%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 507 catgttagagtttttggttatgagttggatcagcaattcgattgagcgttgtcaaagcca 566
||||||| ||||||||||| ||||||| |||||||||||||| ||| |||||||||||||
Sbjct: 35 catgttacagtttttggttctgagttgtatcagcaattcgatcgagtgttgtcaaagcca 94
Query: 567 gagttaccaatatgttccctgtgaacccatttcaaactttatcaagcacgggtgtgctca 626
|| ||| |||||||| ||||||||||||||||||||||| ||||||| |||||| ||
Sbjct: 95 gaattagtaatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtattct 154
Query: 627 ggatatttttgccatgaatgatatggaatatcta 660
||||| ||||| | |||||| |||||||||||||
Sbjct: 155 ggata-ttttgtcgtgaatgttatggaatatcta 187
>gb|CL196012.1|CL196012 104_421_10942777_116_32314_001 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942777, DNA
sequence
Length = 642
Score = 135 bits (68), Expect = 7e-030
Identities = 95/104 (91%)
Strand = Plus / Minus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct: 113 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 54
Query: 143 tggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 186
|||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 53 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 10
>gb|CW140068.1|CW140068 104_530_11135584_116_34913_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135584, DNA
sequence
Length = 667
Score = 135 bits (68), Expect = 7e-030
Identities = 95/104 (91%)
Strand = Plus / Plus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct: 206 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 265
Query: 143 tggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 186
|||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 266 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 309
>gb|CW328843.1|CW328843 104_825_11479523_116_35999_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479523, DNA
sequence
Length = 685
Score = 135 bits (68), Expect = 7e-030
Identities = 95/104 (91%)
Strand = Plus / Plus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct: 523 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 582
Query: 143 tggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 186
|||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 583 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 626
>gb|CW328844.1|CW328844 104_825_11479523_148_36000_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479523, DNA
sequence
Length = 699
Score = 135 bits (68), Expect = 7e-030
Identities = 95/104 (91%)
Strand = Plus / Minus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct: 433 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 374
Query: 143 tggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 186
|||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 373 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 330
>gb|CW501006.1|CW501006 fsbb001f296j14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296j14, DNA
sequence
Length = 671
Score = 135 bits (68), Expect = 7e-030
Identities = 95/104 (91%)
Strand = Plus / Minus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct: 545 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 486
Query: 143 tggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 186
|||||| || |||||||||||||| || ||||||||||||||||
Sbjct: 485 tggccgccttgtcgtcatcgtcgacgtcgtcgaccagaacaggg 442
>gb|CL196011.1|CL196011 104_421_10942777_114_32310_001 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942777, DNA
sequence
Length = 722
Score = 111 bits (56), Expect = 1e-022
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct: 633 gccgttcaagaggttcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 692
Query: 143 tggccgtctcgtcgtcatcgtcga 166
|||||| || ||||||||||||||
Sbjct: 693 tggccgccttgtcgtcatcgtcga 716
>gb|CW501007.1|CW501007 fsbb001f296j14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296j14, DNA
sequence
Length = 706
Score = 103 bits (52), Expect = 2e-020
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 83 gccgttcaagaggttcgtggagatcgggcgcgtggccctggtgaactacgggaaggacta 142
|||| |||||||| |||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct: 334 gccggtcaagagggtcgtggagatcgggcgggtggctcttgtgaactacggcaaggagta 393
Query: 143 tggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacaggg 186
||| || || |||||||||||||| | ||||||||||||||||
Sbjct: 394 tgggcgccttgtcgtcatcgtcgacggcgtcgaccagaacaggg 437
>gb|CW119547.1|CW119547 104_496_11108830_148_34635_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108830, DNA
sequence
Length = 643
Score = 91.7 bits (46), Expect = 9e-017
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 575 aatatgttccctgtgaacccatttcaaactttatcaagcacgggtgtgctcaggatattt 634
|||||||| ||||||||||||||||||||||| ||||||| ||||||| || ||||| ||
Sbjct: 1 aatatgtttcctgtgaacccatttcaaactttgtcaagcatgggtgtgttctggata-tt 59
Query: 635 ttgccatgaatgatatggaatatcta 660
||| | |||||| |||||||||||||
Sbjct: 60 ttgtcgtgaatgttatggaatatcta 85
>gb|CW094283.1|CW094283 104_457_11000221_148_37474_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000221, DNA
sequence
Length = 715
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 24 ccgcgcttcgcccactcgctccagccgcttcaccgcgccgccaccgc 70
||||||||||||| ||||||||||||||||||| ||| |||| ||||
Sbjct: 530 ccgcgcttcgccctctcgctccagccgcttcacagcgtcgccgccgc 576
>gb|CW119546.1|CW119546 104_496_11108830_116_34639_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108830, DNA
sequence
Length = 629
Score = 48.1 bits (24), Expect = 0.001
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 601 aactttatcaagcacgggtgtgctcaggatatttttgccatgaatgatatggaatatcta 660
|||||| ||||||| ||||||| || ||||||||| | | |||||| |||||||||||||
Sbjct: 629 aactttgtcaagcatgggtgtgttctggatatttt-gtcgtgaatgttatggaatatcta 571
>gb|CW408842.1|CW408842 fsbb001f102o12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102o12, DNA
sequence
Length = 679
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 152 cgtcgtcatcgtcgatgtggtcg 174
|||||||||||||||||||||||
Sbjct: 635 cgtcgtcatcgtcgatgtggtcg 613
>gb|CW419449.1|CW419449 fsbb001f124e24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f124e24, DNA
sequence
Length = 639
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 152 cgtcgtcatcgtcgatgtggtcg 174
|||||||||||||||||||||||
Sbjct: 583 cgtcgtcatcgtcgatgtggtcg 561
>gb|CW408841.1|CW408841 fsbb001f102o12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102o12, DNA
sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 gtcgtcatcgtcgatgtggtcg 174
||||||||||||||||||||||
Sbjct: 545 gtcgtcatcgtcgatgtggtcg 566
>gb|CW222881.1|CW222881 104_658_11202611_116_37181_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202611, DNA
sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 gccaccgccaccgcgaggatg 83
|||||||||||||||||||||
Sbjct: 356 gccaccgccaccgcgaggatg 376
>gb|CW222882.1|CW222882 104_658_11202611_148_37182_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202611, DNA
sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 63 gccaccgccaccgcgaggatg 83
|||||||||||||||||||||
Sbjct: 558 gccaccgccaccgcgaggatg 538
>gb|CW246173.1|CW246173 104_707_11221233_116_35084_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221233, DNA
sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 63 gccaccgccaccgcgaggatg 83
|||||||||||||||||||||
Sbjct: 548 gccaccgccaccgcgaggatg 528
>gb|AW671109.1|AW671109 LG1_329_E03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ccgcgccgccaccgccaccgc 76
|||||||||||||||||||||
Sbjct: 217 ccgcgccgccaccgccaccgc 237
>gb|AW671520.1|AW671520 LG1_347_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.077
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ccgcgccgccaccgccaccgc 76
|||||||||||||||||||||
Sbjct: 164 ccgcgccgccaccgccaccgc 184
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,902
Number of Sequences: 832831
Number of extensions: 198902
Number of successful extensions: 58701
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58585
Number of HSP's gapped (non-prelim): 87
length of query: 798
length of database: 491,359,669
effective HSP length: 20
effective length of query: 778
effective length of database: 474,703,049
effective search space: 369318972122
effective search space used: 369318972122
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)