BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738931.2.11
(609 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF757145.1|CF757145 DSAF1_14_C10.g1_A011 Drought-stresse... 634 e-180
gb|CX607512.1|CX607512 ANR1_29_D08.b1_A002 Anaerobic roots ... 634 e-180
gb|CX609140.1|CX609140 ANR1_10_H07.g1_A002 Anaerobic roots ... 632 e-180
gb|AW681059.1|AW681059 WS1_8_F11.b1_A002 Water-stressed 1 (... 628 e-178
gb|CF758711.1|CF758711 DSAF1_35_G03.g1_A011 Drought-stresse... 626 e-178
gb|CF486710.1|CF486710 POL1_39_G01.b1_A002 Pollen Sorghum b... 595 e-168
gb|AW286714.2|AW286714 LG1_204_D05.b1_A002 Light Grown 1 (L... 301 4e-080
gb|AW563235.1|AW563235 LG1_204_D05.g1_A002 Light Grown 1 (L... 301 4e-080
gb|AW677661.1|AW677661 WS1_10_H03.b1_A002 Water-stressed 1 ... 301 4e-080
gb|CX609218.1|CX609218 ANR1_11_H04.b1_A002 Anaerobic roots ... 301 4e-080
gb|CX612032.1|CX612032 ANR1_28_D05.b1_A002 Anaerobic roots ... 301 4e-080
gb|CX609304.1|CX609304 ANR1_11_H04.g1_A002 Anaerobic roots ... 293 1e-077
gb|AW677706.1|AW677706 WS1_10_H03.g1_A002 Water-stressed 1 ... 281 4e-074
gb|BE918174.1|BE918174 OV1_2_G12.b1_A002 Ovary 1 (OV1) Sorg... 280 1e-073
gb|CX612122.1|CX612122 ANR1_28_D05.g1_A002 Anaerobic roots ... 278 6e-073
gb|BE918375.1|BE918375 OV1_2_G12.g1_A002 Ovary 1 (OV1) Sorg... 240 1e-061
gb|CL187157.1|CL187157 104_402_10900693_114_32432_055 Sorgh... 226 2e-057
gb|CW363851.1|CW363851 fsbb001f035k08f0 Sorghum methylation... 226 2e-057
gb|CW363852.1|CW363852 fsbb001f035k08k0 Sorghum methylation... 226 2e-057
gb|CW390284.1|CW390284 fsbb001f075o01k0 Sorghum methylation... 190 1e-046
gb|CL150996.1|CL150996 104_333_10778930_114_31359_098 Sorgh... 182 3e-044
gb|CL168261.1|CL168261 104_365_10810678_114_31804_358 Sorgh... 182 3e-044
gb|CW390283.1|CW390283 fsbb001f075o01f0 Sorghum methylation... 176 2e-042
gb|CL159169.1|CL159169 104_348_10804065_114_31379_273 Sorgh... 80 3e-013
gb|CL187158.1|CL187158 104_402_10900693_116_32436_055 Sorgh... 80 3e-013
gb|CW439738.1|CW439738 fsbb001f158a12k0 Sorghum methylation... 80 3e-013
>gb|CF757145.1|CF757145 DSAF1_14_C10.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_14_C10_A011 3', mRNA sequence
Length = 544
Score = 634 bits (320), Expect = e-180
Identities = 453/496 (91%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 12 acactacccagcggaatccgcccacccgcacccggagcagaggagatatgtcgcagggga 71
|||| |||||| |||||| |||||||||||||||||||||||||| ||| || | |||
Sbjct: 6 acaccacccagtcgaatccccccacccgcacccggagcagaggagagatggcggacagga 65
Query: 72 agggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 131
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 agggaggagcggcaaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 125
Query: 132 agcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcagga 191
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 126 agcgcctccacggctgcacattcaagaagaaggcacccaatgccgtcaaggagatcagga 185
Query: 192 agtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagc 251
|||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 186 agtttgcacagaaggctatgggcaccaccgacgtcaggattgacgtgaagctcaacaagc 245
Query: 252 acatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgca 311
||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 246 acatctggagcagtggaatcaggagcgtgccacggagggttcgtgtgaggattgcccgca 305
Query: 312 agaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcggaga 371
|||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct: 306 agaggaacgacgaggaggatgccaaggaggaactctactcccttgtcacggtggctgaga 365
Query: 372 tccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagctg 431
||||||| |||||||||||||||||||| ||||||||| |||| ||| | |||||||||
Sbjct: 366 tccctgctgagggcttgaaagggctgggaaccaaggtcattgatgaagctgattaagcta 425
Query: 432 tcgcgttctccacatctttagagagttcctagtttgtatttgcaacagcaaaaccttttg 491
|| | | | ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 426 tcacatcttaagcatctttagagagtttttagtttgtatttgcaacagc-aaaccttttg 484
Query: 492 tatccaaggaagtttt 507
||||||| ||||||||
Sbjct: 485 tatccaaagaagtttt 500
>gb|CX607512.1|CX607512 ANR1_29_D08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_D08_A002 3', mRNA sequence
Length = 581
Score = 634 bits (320), Expect = e-180
Identities = 453/496 (91%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 12 acactacccagcggaatccgcccacccgcacccggagcagaggagatatgtcgcagggga 71
|||| |||||| |||||| |||||||||||||||||||||||||| ||| || | |||
Sbjct: 19 acaccacccagtcgaatccccccacccgcacccggagcagaggagagatggcggacagga 78
Query: 72 agggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 131
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 agggaggagcggcaaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 138
Query: 132 agcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcagga 191
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 139 agcgcctccacggctgcacattcaagaagaaggcacccaatgccgtcaaggagatcagga 198
Query: 192 agtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagc 251
|||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 199 agtttgcacagaaggctatgggcaccaccgacgtcaggattgacgtgaagctcaacaagc 258
Query: 252 acatctggagcagcgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgca 311
||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 259 acatctggagcagtggaatcaggagcgtgccacggagggttcgtgtgaggattgcccgca 318
Query: 312 agaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcggaga 371
|||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct: 319 agaggaacgacgaggaggatgccaaggaggaactctactcccttgtcacggtggctgaga 378
Query: 372 tccctgccgagggcttgaaagggctggggaccaaggtcgttgacgaaaccgattaagctg 431
||||||| |||||||||||||||||||| ||||||||| |||| ||| | |||||||||
Sbjct: 379 tccctgctgagggcttgaaagggctgggaaccaaggtcattgatgaagctgattaagcta 438
Query: 432 tcgcgttctccacatctttagagagttcctagtttgtatttgcaacagcaaaaccttttg 491
|| | | | ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 439 tcacatcttaagcatctttagagagtttttagtttgtatttgcaacagc-aaaccttttg 497
Query: 492 tatccaaggaagtttt 507
||||||| ||||||||
Sbjct: 498 tatccaaagaagtttt 513
Score = 44.1 bits (22), Expect = 0.015
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 513 tcacaaagttgtctatttctgcaacagaattgcatggctagt 554
||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 537 tcacaaagttgtctatttcctcaatcgaattacatggctagt 578
>gb|CX609140.1|CX609140 ANR1_10_H07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_H07_A002 5', mRNA sequence
Length = 710
Score = 632 bits (319), Expect = e-180
Identities = 443/483 (91%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 25 gaatccgcccacccgcacccggagcagaggagatatgtcgcaggggaagggaggagcgtc 84
|||||| |||||||||||||||||||||||||| ||| || | |||||||||||||| |
Sbjct: 2 gaatccccccacccgcacccggagcagaggagagatggcggacaggaagggaggagcggc 61
Query: 85 gaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aaggaaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 121
Query: 145 ctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaa 204
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 122 ctgcacattcaagaagaaggcacccaatgccgtcaaggagatcaggaagtttgcacagaa 181
Query: 205 ggccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcag 264
||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 182 ggctatgggcaccaccgacgtcaggattgacgtgaagctcaacaagcacatctggagcag 241
Query: 265 cgggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatga 324
|| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 242 tggaatcaggagcgtgccacggagggttcgtgtgaggattgcccgcaagaggaacgacga 301
Query: 325 ggaggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgaggg 384
|||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct: 302 ggaggatgccaaggaggaactctactcccttgtcacggtggctgagatccctgctgaggg 361
Query: 385 cttgaaagggctggggaccaaggtcgttgacgaaaccgattaagctgtcgcgttctccac 444
||||||||||||||| ||||||||| |||| ||| | ||||||||| || | | | |
Sbjct: 362 cttgaaagggctgggaaccaaggtcattgatgaagctgattaagctatcacatcttaagc 421
Query: 445 atctttagagagttcctagtttgtatttgcaacagcaaaaccttttgtatccaaggaagt 504
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 422 atctttagagagtttttagtttgtatttgcaacagc-aaaccttttgtatccaaagaagt 480
Query: 505 ttt 507
|||
Sbjct: 481 ttt 483
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 513 tcacaaagttgtctatttctgcaacagaattgcatggctagtt 555
||||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 507 tcacaaagttgtctatttcctcaatcgaattacatggctagtt 549
>gb|AW681059.1|AW681059 WS1_8_F11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 628 bits (317), Expect = e-178
Identities = 438/477 (91%), Gaps = 1/477 (0%)
Strand = Plus / Plus
Query: 31 gcccacccgcacccggagcagaggagatatgtcgcaggggaagggaggagcgtcgaggaa 90
||||||||||||||||||||||||||| ||| || | |||||||||||||| | |||||
Sbjct: 8 gcccacccgcacccggagcagaggagagatggcggacaggaagggaggagcggcaaggaa 67
Query: 91 ggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcac 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcac 127
Query: 151 attcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccat 210
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct: 128 attcaagaagaaggcacccaatgccgtcaaggagatcaggaagtttgcacagaaggctat 187
Query: 211 gggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcgggat 270
||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 188 gggcaccaccgacgtcaggattgacgtgaagctcaacaagcacatctggagcagtggaat 247
Query: 271 caggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggagga 330
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 248 caggagcgtgccacggagggttcgtgtgaggattgcccgcaagaggaacgacgaggagga 307
Query: 331 tgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttgaa 390
|||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct: 308 tgccaaggaggaactctactcccttgtcacggtggctgagatccctgctgagggcttgaa 367
Query: 391 agggctggggaccaaggtcgttgacgaaaccgattaagctgtcgcgttctccacatcttt 450
||||||||| ||||||||| |||| ||| | ||||||||| || | | | |||||||
Sbjct: 368 agggctgggaaccaaggtcattgatgaagctgattaagctatcacatcttaagcatcttt 427
Query: 451 agagagttcctagtttgtatttgcaacagcaaaaccttttgtatccaaggaagtttt 507
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 428 agagagtttttagtttgtatttgcaacagc-aaaccttttgtatccaaagaagtttt 483
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 513 tcacaaagttgtctatttctgcaacagaattgcatggctagtt 555
||||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 507 tcacaaagttgtctatttcctcaatcgaattacatggctagtt 549
>gb|CF758711.1|CF758711 DSAF1_35_G03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_35_G03_A011 3', mRNA sequence
Length = 523
Score = 626 bits (316), Expect = e-178
Identities = 437/476 (91%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 32 cccacccgcacccggagcagaggagatatgtcgcaggggaagggaggagcgtcgaggaag 91
|||||||||||||||||||||||||| ||| || | |||||||||||||| | ||||||
Sbjct: 4 cccacccgcacccggagcagaggagagatggcggacaggaagggaggagcggcaaggaag 63
Query: 92 gaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcaca 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcaca 123
Query: 152 ttcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatg 211
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct: 124 ttcaagaagaaggcacccaatgccgtcaaggagatcaggaagtttgcacagaaggctatg 183
Query: 212 ggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcgggatc 271
|||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||
Sbjct: 184 ggcaccaccgacgtcaggattgacgtgaagctcaacaagcacatctggagcagtggaatc 243
Query: 272 aggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggaggat 331
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 244 aggagcgtgccacggagggttcgtgtgaggattgcccgcaagaggaacgacgaggaggat 303
Query: 332 gccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttgaaa 391
||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 304 gccaaggaggaactctactcccttgtcacggtggctgagatccctgctgagggcttgaaa 363
Query: 392 gggctggggaccaaggtcgttgacgaaaccgattaagctgtcgcgttctccacatcttta 451
|||||||| ||||||||| |||| ||| | ||||||||| || | | | ||||||||
Sbjct: 364 gggctgggaaccaaggtcattgatgaagctgattaagctatcacatcttaagcatcttta 423
Query: 452 gagagttcctagtttgtatttgcaacagcaaaaccttttgtatccaaggaagtttt 507
||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 424 gagagtttttagtttgtatttgcaacagc-aaaccttttgtatccaaagaagtttt 478
>gb|CF486710.1|CF486710 POL1_39_G01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_39_G01_A002 3', mRNA sequence
Length = 544
Score = 595 bits (300), Expect = e-168
Identities = 424/464 (91%), Gaps = 1/464 (0%)
Strand = Plus / Plus
Query: 44 cggagcagaggagatatgtcgcaggggaagggaggagcgtcgaggaaggaggaggtggtc 103
|||||||||||||| ||| || | |||||||||||||| | ||||||||||||||||||
Sbjct: 25 cggagcagaggagagatggcggacaggaagggaggagcggcaaggaaggaggaggtggtc 84
Query: 104 accagggagtacaccatcaacctccacaagcgcctccacggctgcacattcaagaagaag 163
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 85 accagggagtacaccatcaacctccacaagcgcttccacggctgcacattcaagaagaag 144
Query: 164 gcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggcaccacggac 223
|||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 145 gcacccaatgccgtcaaggagatcaggaagtttgcacagaaggctatgggcaccaccgac 204
Query: 224 gtcaggatcgatgtgaagctcaacaagcacatctggagcagcgggatcaggagcgtgccg 283
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 205 gtcaggattgacgtgaagctcaacaagcacatctggagcagtggaatcaggagcgtgcca 264
Query: 284 cggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggaggatgccaaggaggaa 343
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 cggagggttcgtgtgaggattgcccgcaagaggaacgacgaggaggatgccaaggaggaa 324
Query: 344 ctctactcccttgtcaccgtcgcggagatccctgccgagggcttgaaagggctggggacc 403
||||||||||||||||| || || ||||||||||| |||||||||||||||||||| |||
Sbjct: 325 ctctactcccttgtcacggtggctgagatccctgctgagggcttgaaagggctgggaacc 384
Query: 404 aaggtcgttgacgaaaccgattaagctgtcgcgttctccacatctttagagagttcctag 463
|||||| |||| ||| | ||||||||| || | | | ||||||||||||||| |||
Sbjct: 385 aaggtcattgatgaagctgattaagctatcacatcttaagcatctttagagagtttttag 444
Query: 464 tttgtatttgcaacagcaaaaccttttgtatccaaggaagtttt 507
||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 445 tttgtatttgcaacagc-aaaccttttgtatccaaagaagtttt 487
>gb|AW286714.2|AW286714 LG1_204_D05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 301 bits (152), Expect = 4e-080
Identities = 254/288 (88%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 103 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccacggatgc 162
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 163 accttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaaggcc 222
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 223 atgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtggt 282
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 283 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 342
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 343 gatgctaaggaggaactctactccctggtcacagttgctgagatccct 390
>gb|AW563235.1|AW563235 LG1_204_D05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 301 bits (152), Expect = 4e-080
Identities = 254/288 (88%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 17 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccacggatgc 76
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 77 accttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaaggcc 136
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 137 atgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtggt 196
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 197 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 256
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 257 gatgctaaggaggaactctactccctggtcacagttgctgagatccct 304
>gb|AW677661.1|AW677661 WS1_10_H03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 572
Score = 301 bits (152), Expect = 4e-080
Identities = 254/288 (88%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 97 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccacggatgc 156
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 157 accttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaaggcc 216
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 217 atgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtggt 276
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 277 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 336
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 337 gatgctaaggaggaactctactccctggtcacagttgctgagatccct 384
>gb|CX609218.1|CX609218 ANR1_11_H04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_H04_A002 3', mRNA sequence
Length = 593
Score = 301 bits (152), Expect = 4e-080
Identities = 254/288 (88%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 113 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccacggatgc 172
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 173 accttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaaggcc 232
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 233 atgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtggt 292
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 293 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 352
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 353 gatgctaaggaggaactctactccctggtcacagttgctgagatccct 400
>gb|CX612032.1|CX612032 ANR1_28_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_28_D05_A002 3', mRNA sequence
Length = 637
Score = 301 bits (152), Expect = 4e-080
Identities = 254/288 (88%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 113 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccacggatgc 172
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 173 accttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaaggcc 232
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 233 atgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtggt 292
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 293 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 352
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 353 gatgctaaggaggaactctactccctggtcacagttgctgagatccct 400
>gb|CX609304.1|CX609304 ANR1_11_H04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_H04_A002 5', mRNA sequence
Length = 614
Score = 293 bits (148), Expect = 1e-077
Identities = 253/288 (87%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 104 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccacggatgc 163
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 164 accttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaaggcc 223
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct: 224 atgggtactacagatgtcatgattgatgtgaagctcaacaagcacatctggagcagtggt 283
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 284 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 343
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 344 gatgctaaggaggaactctactccctggtcacagttgctgagatccct 391
>gb|AW677706.1|AW677706 WS1_10_H03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 458
Score = 281 bits (142), Expect = 4e-074
Identities = 280/326 (85%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | |||||||||||||||||||||||| |||||||||| |||
Sbjct: 16 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagggcctccacggatgc 75
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct: 76 accttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaaggcc 135
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct: 136 atgggtactacagatgtcaggattgatgtgaagctcaacaagcacatttggagcagtggt 195
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 196 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 255
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggcttg 388
||||| ||||||||||| |||||||| ||||| || || ||||||||| | ||||| ||
Sbjct: 256 gatgctaaggaggaactttactccctggtcacagttgctgagatccctccggagggtttc 315
Query: 389 aaagggctggggaccaaggtcgttga 414
||||| |||| || ||||| |||||
Sbjct: 316 aaaggtttgggaactaaggttgttga 341
>gb|BE918174.1|BE918174 OV1_2_G12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 337
Score = 280 bits (141), Expect = 1e-073
Identities = 217/241 (90%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 7 ggatcaggagcgtgccacggagggttcgtgtgaggattgcccgcaagaggaacgacgagg 66
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggct 386
|||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct: 67 aggatgccaaggaggaactctactcccttgtcacggtggctgagatccctgctgagggct 126
Query: 387 tgaaagggctggggaccaaggtcgttgacgaaaccgattaagctgtcgcgttctccacat 446
||||||||||||| ||||||||| |||| ||| | ||||||||| || | | | |||
Sbjct: 127 tgaaagggctgggaaccaaggtcattgatgaagctgattaagctatcacatcttaagcat 186
Query: 447 ctttagagagttcctagtttgtatttgcaacagcaaaaccttttgtatccaaggaagttt 506
|||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 187 ctttagagagtttttagtttgtatttgcaacagc-aaaccttttgtatccaaagaagttt 245
Query: 507 t 507
|
Sbjct: 246 t 246
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 513 tcacaaagttgtctatttctgcaacagaattgcatggctagtt 555
||||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 270 tcacaaagttgtctatttcctcaatcgaattacatggctagtt 312
>gb|CX612122.1|CX612122 ANR1_28_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_28_D05_A002 5', mRNA sequence
Length = 653
Score = 278 bits (140), Expect = 6e-073
Identities = 251/288 (87%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||| ||| | ||||||||||||||||||||||||||||||| ||| |||
Sbjct: 104 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccgcggatgc 163
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| ||| |||||||||| || || |||||||||||||||||||||||||| || ||||||
Sbjct: 164 accttcgagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcacaaggcc 223
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| || || || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 224 atgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtggt 283
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
||| | || |||||| || | || ||||| || || ||||||||||||||||| |||||
Sbjct: 284 atccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgaggaa 343
Query: 329 gatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 344 gatgctaaggaggaactctactccctggtcacagttgctgagatccct 391
>gb|BE918375.1|BE918375 OV1_2_G12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 246
Score = 240 bits (121), Expect = 1e-061
Identities = 194/217 (89%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 7 ggatcaggagcgtgccacggagggttcgtgtgaggattgcccgcaagaggaacgacgagg 66
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccctgccgagggct 386
|||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct: 67 aggatgccaaggaggaactctactcccttgtcacggtggctgagatccctgctgagggct 126
Query: 387 tgaaagggctggggaccaaggtcgttgacgaaaccgattaagctgtcgcgttctccacat 446
||||||||||||| ||||||||| |||| ||| | ||||||||| || | | | |||
Sbjct: 127 tgaaagggctgggaaccaaggtcattgatgaagctgattaagctatcacatcttaagcat 186
Query: 447 ctttagagagttcctagtttgtatttgcaacagcaaa 483
||||||||||| |||||||||||||||||||||||
Sbjct: 187 -tttagagagtttttagtttgtatttgcaacagcaaa 222
>gb|CL187157.1|CL187157 104_402_10900693_114_32432_055 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900693, DNA
sequence
Length = 782
Score = 226 bits (114), Expect = 2e-057
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || |||||||||||||||||||||||||| |||||||
Sbjct: 78 gcaccttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaagg 137
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
||||||| || || || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 138 ccatgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtg 197
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| | || |||||| || | || ||||| || || ||||||||||||||||| ||||
Sbjct: 198 gtatccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgagg 257
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
| ||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 258 aagatgctaaggaggaactctactccctggtcacagttgctgagatccct 307
>gb|CW363851.1|CW363851 fsbb001f035k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035k08, DNA
sequence
Length = 706
Score = 226 bits (114), Expect = 2e-057
Identities = 201/230 (87%)
Strand = Plus / Minus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || |||||||||||||||||||||||||| |||||||
Sbjct: 628 gcaccttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaagg 569
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
||||||| || || || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 568 ccatgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtg 509
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| | || |||||| || | || ||||| || || ||||||||||||||||| ||||
Sbjct: 508 gtatccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgagg 449
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
| ||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 448 aagatgctaaggaggaactctactccctggtcacagttgctgagatccct 399
>gb|CW363852.1|CW363852 fsbb001f035k08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035k08, DNA
sequence
Length = 758
Score = 226 bits (114), Expect = 2e-057
Identities = 201/230 (87%)
Strand = Plus / Plus
Query: 147 gcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaagg 206
|||| |||||||||||||| || || |||||||||||||||||||||||||| |||||||
Sbjct: 154 gcaccttcaagaagaaggccccaaatgccatcaaggagatcaggaagtttgctcagaagg 213
Query: 207 ccatgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcg 266
||||||| || || || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 214 ccatgggtactacagatgtcaggattgatgtgaagctcaacaagcacatctggagcagtg 273
Query: 267 ggatcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgagg 326
| ||| | || |||||| || | || ||||| || || ||||||||||||||||| ||||
Sbjct: 274 gtatccgtagtgtgccgaggcgagtccgtgtcagaattgcccgcaagaggaacgacgagg 333
Query: 327 aggatgccaaggaggaactctactcccttgtcaccgtcgcggagatccct 376
| ||||| |||||||||||||||||||| ||||| || || |||||||||
Sbjct: 334 aagatgctaaggaggaactctactccctggtcacagttgctgagatccct 383
>gb|CW390284.1|CW390284 fsbb001f075o01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075o01, DNA
sequence
Length = 602
Score = 190 bits (96), Expect = 1e-046
Identities = 126/136 (92%)
Strand = Plus / Minus
Query: 12 acactacccagcggaatccgcccacccgcacccggagcagaggagatatgtcgcagggga 71
|||| |||||| ||||||| |||||||||||||||||||||||||| ||| || | |||
Sbjct: 575 acaccacccagtggaatccccccacccgcacccggagcagaggagagatggcggacagga 516
Query: 72 agggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 131
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agggaggagcggcaaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 456
Query: 132 agcgcctccacggctg 147
||||||||||||||||
Sbjct: 455 agcgcctccacggctg 440
>gb|CL150996.1|CL150996 104_333_10778930_114_31359_098 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778930, DNA
sequence
Length = 532
Score = 182 bits (92), Expect = 3e-044
Identities = 125/136 (91%)
Strand = Plus / Plus
Query: 12 acactacccagcggaatccgcccacccgcacccggagcagaggagatatgtcgcagggga 71
|||| |||||| |||||| |||||||||||||||||||||||||| ||| || | |||
Sbjct: 97 acaccacccagtcgaatccccccacccgcacccggagcagaggagagatggcggacagga 156
Query: 72 agggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 131
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agggaggagcggcaaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 216
Query: 132 agcgcctccacggctg 147
||||||||||||||||
Sbjct: 217 agcgcctccacggctg 232
>gb|CL168261.1|CL168261 104_365_10810678_114_31804_358 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810678, DNA
sequence
Length = 767
Score = 182 bits (92), Expect = 3e-044
Identities = 125/136 (91%)
Strand = Plus / Minus
Query: 12 acactacccagcggaatccgcccacccgcacccggagcagaggagatatgtcgcagggga 71
|||| |||||| |||||| |||||||||||||||||||||||||| ||| || | |||
Sbjct: 479 acaccacccagtcgaatccccccacccgcacccggagcagaggagagatggcggacagga 420
Query: 72 agggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 131
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agggaggagcggcaaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 360
Query: 132 agcgcctccacggctg 147
||||||||||||||||
Sbjct: 359 agcgcctccacggctg 344
>gb|CW390283.1|CW390283 fsbb001f075o01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075o01, DNA
sequence
Length = 606
Score = 176 bits (89), Expect = 2e-042
Identities = 122/133 (91%)
Strand = Plus / Plus
Query: 12 acactacccagcggaatccgcccacccgcacccggagcagaggagatatgtcgcagggga 71
|||| |||||| |||||| |||||||||||||||||||||||||| ||| || | |||
Sbjct: 366 acaccacccagtcgaatccccccacccgcacccggagcagaggagagatggcggacagga 425
Query: 72 agggaggagcgtcgaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 131
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agggaggagcggcaaggaaggaggaggtggtcaccagggagtacaccatcaacctccaca 485
Query: 132 agcgcctccacgg 144
|||||||||||||
Sbjct: 486 agcgcctccacgg 498
>gb|CL159169.1|CL159169 104_348_10804065_114_31379_273 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804065, DNA
sequence
Length = 752
Score = 79.8 bits (40), Expect = 3e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 285 aaggacgaggtggttacccgcgagtacaccatcaacctccacaagcgcctccacgg 340
>gb|CL187158.1|CL187158 104_402_10900693_116_32436_055 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900693, DNA
sequence
Length = 683
Score = 79.8 bits (40), Expect = 3e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 309 gcaagaggaacgatgaggaggatgccaaggaggaactctactcccttgtcaccgtcgcgg 368
||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || || |
Sbjct: 683 gcaagaggaacgacgaggaagatgctaaggaggaactctactccctggtcacagttgctg 624
Query: 369 agatccct 376
||||||||
Sbjct: 623 agatccct 616
>gb|CW439738.1|CW439738 fsbb001f158a12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f158a12, DNA
sequence
Length = 656
Score = 79.8 bits (40), Expect = 3e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacgg 144
||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 333 aaggatgaggtggtaacccgcgagtacaccatcaacctccacaagcgcctccacgg 388
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 201,747
Number of Sequences: 832831
Number of extensions: 201747
Number of successful extensions: 58608
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58560
Number of HSP's gapped (non-prelim): 41
length of query: 609
length of database: 491,359,669
effective HSP length: 19
effective length of query: 590
effective length of database: 475,535,880
effective search space: 280566169200
effective search space used: 280566169200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)