BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724818.2.1
(1089 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL149701.1|CL149701 104_330_10777997_114_31353_317 Sorgh... 718 0.0
gb|CW258312.1|CW258312 104_724_11227807_148_35168_030 Sorgh... 599 e-169
gb|CW327394.1|CW327394 104_823_11478723_148_35976_014 Sorgh... 537 e-151
gb|CL147776.1|CL147776 104_327_10592627_148_31780_135 Sorgh... 504 e-140
gb|CW327393.1|CW327393 104_823_11478723_116_35975_014 Sorgh... 327 1e-087
gb|CW265811.1|CW265811 104_735_11232087_148_35267_060 Sorgh... 268 1e-069
gb|BG103283.1|BG103283 RHIZ2_18_E05.b1_A003 Rhizome2 (RHIZ2... 248 9e-064
gb|CW075039.1|CW075039 104_354_10806217_116_31831_121 Sorgh... 238 9e-061
gb|CW236177.1|CW236177 104_692_11215475_148_37500_048 Sorgh... 220 2e-055
gb|CW293035.1|CW293035 104_773_11414430_148_35592_025 Sorgh... 216 3e-054
gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorgh... 212 5e-053
gb|CD225818.1|CD225818 CCC1_41_E05.g1_A007 Callus culture/c... 135 1e-029
gb|CW288895.1|CW288895 104_767_11412192_148_35540_088 Sorgh... 133 4e-029
gb|CL161320.1|CL161320 104_352_10805630_114_31826_302 Sorgh... 111 1e-022
gb|CW216099.1|CW216099 104_648_11194932_148_37119_036 Sorgh... 103 3e-020
gb|CW312599.1|CW312599 104_802_11470846_116_35783_087 Sorgh... 101 1e-019
gb|CW459001.1|CW459001 fsbb001f205i16f0 Sorghum methylation... 101 1e-019
gb|BE125039.1|BE125039 DG1_14_C09.b1_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BE355969.1|BE355969 DG1_121_C03.b1_A002 Dark Grown 1 (DG... 101 1e-019
gb|BE357477.1|BE357477 DG1_20_D08.b2_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BE357902.1|BE357902 DG1_23_H01.b1_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BE358092.1|BE358092 DG1_24_B06.b1_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BE358383.1|BE358383 DG1_29_B03.b1_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BE359851.1|BE359851 DG1_58_D02.b2_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BE360095.1|BE360095 DG1_61_C06.b1_A002 Dark Grown 1 (DG1... 101 1e-019
gb|BE362367.1|BE362367 DG1_86_F01.b1_A002 Dark Grown 1 (DG1... 101 1e-019
gb|CD206111.1|CD206111 HS1_20_G11.g1_A012 Heat-shocked seed... 101 1e-019
gb|CD206853.1|CD206853 HS1_25_E08.g1_A012 Heat-shocked seed... 101 1e-019
gb|CD221105.1|CD221105 CCC1_73_D05.g1_A007 Callus culture/c... 101 1e-019
gb|CD221414.1|CD221414 CCC1_54_A05.g1_A007 Callus culture/c... 101 1e-019
gb|CD221425.1|CD221425 CCC1_54_H12.g1_A007 Callus culture/c... 101 1e-019
gb|CD222028.1|CD222028 CCC1_1_H04.g1_A007 Callus culture/ce... 101 1e-019
gb|CD222052.1|CD222052 CCC1_1_G01.g1_A007 Callus culture/ce... 101 1e-019
gb|CD222528.1|CD222528 CCC1_22_F01.g1_A007 Callus culture/c... 101 1e-019
gb|CD223696.1|CD223696 CCC1_29_B11.g1_A007 Callus culture/c... 101 1e-019
gb|CD224384.1|CD224384 CCC1_33_B12.g1_A007 Callus culture/c... 101 1e-019
gb|CD225491.1|CD225491 CCC1_3_E05.g1_A007 Callus culture/ce... 101 1e-019
gb|CD226226.1|CD226226 CCC1_44_F01.g1_A007 Callus culture/c... 101 1e-019
gb|CD227758.1|CD227758 CCC1_53_D06.g1_A007 Callus culture/c... 101 1e-019
gb|CD227777.1|CD227777 CCC1_53_A01.g1_A007 Callus culture/c... 101 1e-019
gb|CD228129.1|CD228129 CCC1_5_G06.g1_A007 Callus culture/ce... 101 1e-019
gb|CD228429.1|CD228429 CCC1_7_E03.g1_A007 Callus culture/ce... 101 1e-019
gb|CD228608.1|CD228608 CCC1_8_G05.g1_A007 Callus culture/ce... 101 1e-019
gb|CD229044.1|CD229044 CCC1_11_F06.g1_A007 Callus culture/c... 101 1e-019
gb|CD229327.1|CD229327 CCC1_14_A06.g1_A007 Callus culture/c... 101 1e-019
gb|CD229517.1|CD229517 CCC1_16_A04.g1_A007 Callus culture/c... 101 1e-019
gb|CD432373.1|CD432373 ETH1_29_A12.g1_A002 Ethylene-treated... 101 1e-019
gb|CN125369.1|CN125369 RHOH1_10_D11.g1_A002 Acid- and alkal... 101 1e-019
gb|CN126897.1|CN126897 RHOH1_19_G02.g1_A002 Acid- and alkal... 101 1e-019
gb|CX613512.1|CX613512 GABR1_8_C12.g1_A002 GA- or brassinol... 101 1e-019
gb|CX614721.1|CX614721 GABR1_15_H03.g1_A002 GA- or brassino... 101 1e-019
gb|CX615558.1|CX615558 GABR1_20_G10.g1_A002 GA- or brassino... 101 1e-019
gb|CD223180.1|CD223180 CCC1_26_B11.g1_A007 Callus culture/c... 94 3e-017
gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation... 92 1e-016
gb|CD208861.1|CD208861 HS1_44_F11.g1_A012 Heat-shocked seed... 86 8e-015
gb|CW364834.1|CW364834 fsbb001f037b01k0 Sorghum methylation... 78 2e-012
gb|CF482715.1|CF482715 POL1_8_E06.g1_A002 Pollen Sorghum bi... 70 5e-010
gb|CW109166.1|CW109166 104_481_11097938_116_34506_011 Sorgh... 66 7e-009
gb|CD225495.1|CD225495 CCC1_3_E02.g1_A007 Callus culture/ce... 64 3e-008
gb|CW371598.1|CW371598 fsbb001f047c04f0 Sorghum methylation... 62 1e-007
gb|BE125971.1|BE125971 DG1_60_D11.b1_A002 Dark Grown 1 (DG1... 60 5e-007
gb|BE358775.1|BE358775 DG1_32_D09.b1_A002 Dark Grown 1 (DG1... 60 5e-007
gb|CW481051.1|CW481051 fsbb001f240g19f0 Sorghum methylation... 58 2e-006
gb|CL191253.1|CL191253 104_410_10906666_116_32537_045 Sorgh... 56 7e-006
gb|CW197778.1|CW197778 104_622_11181862_116_36828_091 Sorgh... 56 7e-006
gb|CW197779.1|CW197779 104_622_11181862_148_36827_091 Sorgh... 56 7e-006
gb|CW361212.1|CW361212 fsbb001f029k10k0 Sorghum methylation... 56 7e-006
gb|CW495807.1|CW495807 fsbb001f287l21k0 Sorghum methylation... 56 7e-006
gb|AW564871.1|AW564871 LG1_312_H11.b1_A002 Light Grown 1 (L... 56 7e-006
gb|BE358993.1|BE358993 DG1_38_F12.b1_A002 Dark Grown 1 (DG1... 56 7e-006
gb|BE359100.1|BE359100 DG1_38_F12.g1_A002 Dark Grown 1 (DG1... 56 7e-006
gb|CD221476.1|CD221476 CCC1_54_B08.g1_A007 Callus culture/c... 56 7e-006
gb|CD229533.1|CD229533 CCC1_16_D02.g1_A007 Callus culture/c... 56 7e-006
gb|CD232336.1|CD232336 SS1_39_D06.g1_A012 Salt-stressed see... 56 7e-006
gb|CD462737.1|CD462737 ETH1_39_D04.g1_A002 Ethylene-treated... 56 7e-006
gb|CD464141.1|CD464141 ETH1_48_G09.g1_A002 Ethylene-treated... 56 7e-006
gb|CF429992.1|CF429992 PH1_25_A06.g1_A002 Phosphorous-defic... 56 7e-006
gb|CN126523.1|CN126523 RHOH1_17_D12.g1_A002 Acid- and alkal... 56 7e-006
gb|CN127716.1|CN127716 RHOH1_24_D09.g3_A002 Acid- and alkal... 56 7e-006
gb|CW118906.1|CW118906 104_495_11108464_148_34699_054 Sorgh... 50 4e-004
gb|CW322149.1|CW322149 104_815_11475938_116_35946_001 Sorgh... 50 4e-004
gb|CW497639.1|CW497639 fsbb001f290h20f0 Sorghum methylation... 50 4e-004
gb|BG948730.1|BG948730 LG1_330_E09.b1_A002 Light Grown 1 (L... 50 4e-004
gb|CD428673.1|CD428673 ETH1_33_D07.g1_A002 Ethylene-treated... 50 4e-004
gb|CD212321.1|CD212321 HS1_30_B10.g1_A012 Heat-shocked seed... 48 0.002
gb|CD219900.1|CD219900 CCC1_59_E06.g1_A007 Callus culture/c... 48 0.002
gb|CF486268.1|CF486268 POL1_36_F02.g1_A002 Pollen Sorghum b... 48 0.002
gb|CN137684.1|CN137684 OX1_58_H05.g1_A002 Oxidatively-stres... 48 0.002
gb|CW462074.1|CW462074 fsbb001f210a19f0 Sorghum methylation... 44 0.027
gb|CD228730.1|CD228730 CCC1_9_C05.g1_A007 Callus culture/ce... 44 0.027
gb|CF481647.1|CF481647 POL1_73_E07.b1_A002 Pollen Sorghum b... 44 0.027
gb|BZ339581.1|BZ339581 ic33c09.b1 WGS-SbicolorF (JM107 adap... 42 0.11
gb|BZ339582.1|BZ339582 ic33c09.g1 WGS-SbicolorF (JM107 adap... 42 0.11
gb|CW063943.1|CW063943 104_309_10522288_114_30136 Sorghum m... 42 0.11
gb|CW097527.1|CW097527 104_463_11002504_148_34359_054 Sorgh... 42 0.11
gb|CW206467.1|CW206467 104_635_11187606_148_36964_027 Sorgh... 42 0.11
gb|CW215434.1|CW215434 104_647_11194537_148_37166_003 Sorgh... 42 0.11
gb|CW223451.1|CW223451 104_659_11202921_148_37186_041 Sorgh... 42 0.11
gb|CW337923.1|CW337923 104_838_11484471_116_36126_064 Sorgh... 42 0.11
gb|CD206011.1|CD206011 HS1_20_G11.b1_A012 Heat-shocked seed... 42 0.11
gb|CD222617.1|CD222617 CCC1_23_C12.b1_A007 Callus culture/c... 42 0.11
gb|CD227866.1|CD227866 CCC1_56_E07.b1_A007 Callus culture/c... 42 0.11
gb|CD463681.1|CD463681 ETH1_46_D02.b1_A002 Ethylene-treated... 42 0.11
gb|CD463835.1|CD463835 ETH1_46_D02.g1_A002 Ethylene-treated... 42 0.11
gb|BZ341390.1|BZ341390 ic45a08.g1 WGS-SbicolorF (JM107 adap... 40 0.42
gb|CW064297.1|CW064297 104_310_10522485_115_30146 Sorghum m... 40 0.42
gb|CW131944.1|CW131944 104_515_11115946_148_34793_045 Sorgh... 40 0.42
gb|CW142969.1|CW142969 104_534_11137156_116_34949_006 Sorgh... 40 0.42
gb|CW203291.1|CW203291 104_629_11185554_116_36915_065 Sorgh... 40 0.42
gb|CW304158.1|CW304158 104_789_11465634_148_35706_079 Sorgh... 40 0.42
gb|CW327642.1|CW327642 104_823_11478859_116_35979_074 Sorgh... 40 0.42
gb|CW327643.1|CW327643 104_823_11478859_148_35980_074 Sorgh... 40 0.42
gb|CW370879.1|CW370879 fsbb001f046a24f0 Sorghum methylation... 40 0.42
gb|CW395662.1|CW395662 fsbb001f083m12k0 Sorghum methylation... 40 0.42
gb|CW420042.1|CW420042 fsbb001f126c19k0 Sorghum methylation... 40 0.42
gb|AW679167.1|AW679167 WS1_23_D08.b1_A002 Water-stressed 1 ... 40 0.42
gb|BE360406.1|BE360406 DG1_63_F04.b1_A002 Dark Grown 1 (DG1... 40 0.42
gb|BE360468.1|BE360468 DG1_63_F04.g1_A002 Dark Grown 1 (DG1... 40 0.42
gb|CB928120.1|CB928120 ABA1_36_D01.g1_A012 Abscisic acid-tr... 40 0.42
>gb|CL149701.1|CL149701 104_330_10777997_114_31353_317 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777997, DNA
sequence
Length = 754
Score = 718 bits (362), Expect = 0.0
Identities = 599/676 (88%), Gaps = 4/676 (0%)
Strand = Plus / Minus
Query: 154 ctcaccctcgcgcgccccgcagcagcgcagccg---ccgacgaacccggcgctgcaggcg 210
||||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct: 676 ctcaccctcgcgccacccgcatcagcgcagccggcgccgacgaccccagcgctgcaggcg 617
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||| | ||||| ||| | ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 616 gcgtacacagcgctccagtcctggaagcggacggccatcttctccgacccatccaacttc 557
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgcgg 330
|| |||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 556 acatccaactgggtcggctcgaacgtgtgcgcctacaacggcatctactgcgcgccgcgt 497
Query: 331 ccctccgacggggcgctggccgtggccggcatcgacct-aaccacgccgacatcgcgggc 389
||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 496 ccctccgacggagcgctcgccgtggccgggatcgacctcaaccacgccgacatcgcgggc 437
Query: 390 cacatccccgccgacctccccctcggcgtgcccgacctggcgctgctccacctcaactcc 449
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 436 cacatccccgccgacctccccctcggcctccccgacctcgcgctgctccacctcaactcc 377
Query: 450 aaccgcttctgcggggtgctgccggacacgctgctccacctgcgcctcctccacgagctc 509
|||||||||||||||||||| |||||||| | |||| || ||||||||||||||||||
Sbjct: 376 aaccgcttctgcggggtgctcccggacaccttcctccgtctccgcctcctccacgagctc 317
Query: 510 gacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgctcccctcg 569
|||||||||||||||||||||||||||||||||||||||||||| || | ||||| |
Sbjct: 316 gacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtcctgggtctcccggcc 257
Query: 570 ctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccgccgctcttc 629
||| | |||||||||||| | ||||| ||||||||||| || ||||||||| || |||||
Sbjct: 256 ctcaggtacctcgacctcaggttcaatgacttcgagggacctatcccgccggcggtcttc 197
Query: 630 gaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcgggcccatcccggcc 689
||||| |||||||| |||||| |||||||||||||||| ||||| || ||||||||||
Sbjct: 196 gaccgtccgctcgatgccatcatcctcaactccaaccgtctccgtggccccatcccgggg 137
Query: 690 aacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaaccgcctcggcggctgc 749
||||| || ||||||||||| |||||| | ||||||||||||||||| || || || ||
Sbjct: 136 aaccttgggaactcgccggcgtccgtggtggtgctcgcgcacaaccggcttggtggatgt 77
Query: 750 atcccgccgtcgatagggaggatggcggccacgctcaacgagatcgtcctcatcgacgac 809
|||||||||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 76 atcccgccgtcgattgggaggatggcggatacgctcaatgagatcgtgctcattgacgac 17
Query: 810 gacctcaccggctgcg 825
|||||||| |||||||
Sbjct: 16 gacctcactggctgcg 1
>gb|CW258312.1|CW258312 104_724_11227807_148_35168_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227807, DNA
sequence
Length = 598
Score = 599 bits (302), Expect = e-169
Identities = 516/586 (88%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 338 acggggcgctggccgtggccggcatcgacct-aaccacgccgacatcgcgggccacatcc 396
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 598 acggagcgctcgccgtggccgggatcgacctcaaccacgccgacatcgcgggccacatcc 539
Query: 397 ccgccgacctccccctcggcgtgcccgacctggcgctgctccacctcaactccaaccgct 456
|||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct: 538 ccgccgacctccccctcggcctccccgacctcgcgctgctccacctcaactccaaccgct 479
Query: 457 tctgcggggtgctgccggacacgctgctccacctgcgcctcctccacgagctcgacctca 516
||||||||||||| |||||||| | |||| || |||||||||||||||||||||||||
Sbjct: 478 tctgcggggtgctcccggacaccttcctccgtctccgcctcctccacgagctcgacctca 419
Query: 517 gcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgctcccctcgctccgct 576
||||||||||||||||||||||||||||||||||||| || | ||||| | ||| | |
Sbjct: 418 gcaacaaccgcttcgtcggcgccttccccgccgtcgtcctgggtctcccggccctcaggt 359
Query: 577 acctcgacctccgcttcaacgacttcgagggccccatcccgccgccgctcttcgaccgcc 636
||||||||||| | ||||| ||||||||||| || ||||||||| || |||||||||| |
Sbjct: 358 acctcgacctcaggttcaatgacttcgagggacctatcccgccggcggtcttcgaccgtc 299
Query: 637 cgctcgacgccatcctcctcaactccaaccgcctccgcgggcccatcccggccaacctcg 696
||||||| |||||| |||||||||||||||| ||||| || |||||||||| ||||| |
Sbjct: 298 cgctcgatgccatcatcctcaactccaaccgtctccgtggccccatcccggggaaccttg 239
Query: 697 gcaactcgccggcctccgtgctcgtgctcgcgcacaaccgcctcggcggctgcatcccgc 756
| ||||||||||| |||||| | ||||||||||||||||| || || || || |||||||
Sbjct: 238 ggaactcgccggcgtccgtggtggtgctcgcgcacaaccggcttggtggatgtatcccgc 179
Query: 757 cgtcgatagggaggatggcggccacgctcaacgagatcgtcctcatcgacgacgacctca 816
||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 178 cgtcgattgggaggatggcggatacgctcaatgagatcgtgctcattgacgacgacctca 119
Query: 817 ccggctgcgtcccgccgcaggtcggcctgctcacgaagctcacggtgttcgacgtcagcg 876
| ||||||||||||||||||||||| |||| | |||| | |||||||| || ||||| |
Sbjct: 118 ctggctgcgtcccgccgcaggtcgggttgcttaggaaggtgacggtgtttgatgtcagtg 59
Query: 877 gcaaccaccttcagggcccgctcccgcccgccgtcggcgggatggc 922
| |||||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 58 ggaaccacctccagggcccgctcccgccgaccgtcgctgggatggc 13
>gb|CW327394.1|CW327394 104_823_11478723_148_35976_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478723, DNA
sequence
Length = 505
Score = 537 bits (271), Expect = e-151
Identities = 439/493 (89%), Gaps = 4/493 (0%)
Strand = Plus / Plus
Query: 154 ctcaccctcgcgcgccccgcagcagcgcagccg---ccgacgaacccggcgctgcaggcg 210
||||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct: 13 ctcaccctcgcgccacccgcatcagcgcagccggcgccgacgaccccagcgctgcaggcg 72
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||| | ||||| ||| | ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 73 gcgtacacagcgctccagtcctggaagcggacggccatcttctccgacccatccaacttc 132
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgcgg 330
|| |||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 133 acatccaactgggtcggctcgaacgtgtgcgcctacaacggcatctactgcgcgccgcgt 192
Query: 331 ccctccgacggggcgctggccgtggccggcatcgacct-aaccacgccgacatcgcgggc 389
||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 193 ccctccgacggagcgctcgccgtggccgggatcgacctcaaccacgccgacatcgcgggc 252
Query: 390 cacatccccgccgacctccccctcggcgtgcccgacctggcgctgctccacctcaactcc 449
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 253 cacatccccgccgacctccccctcggcctccccgacctcgcgctgctccacctcaactcc 312
Query: 450 aaccgcttctgcggggtgctgccggacacgctgctccacctgcgcctcctccacgagctc 509
|||||||||||||||||||| |||||||| | |||| || ||||||||||||||||||
Sbjct: 313 aaccgcttctgcggggtgctcccggacaccttcctccgtctccgcctcctccacgagctc 372
Query: 510 gacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgctcccctcg 569
|||||||||||||||||||||||||||||||||||||||||||| || | ||||| |
Sbjct: 373 gacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtcctgggtctcccggcc 432
Query: 570 ctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccgccgctcttc 629
||| | |||||||||||| | |||| ||||||||||| || ||||||||| || |||||
Sbjct: 433 ctcaggtacctcgacctcagggtcaatgacttcgagggacctatcccgccggcggtcttc 492
Query: 630 gaccgcccgctcg 642
||||| |||||||
Sbjct: 493 gaccgtccgctcg 505
>gb|CL147776.1|CL147776 104_327_10592627_148_31780_135 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592627, DNA
sequence
Length = 604
Score = 504 bits (254), Expect = e-140
Identities = 368/404 (91%), Gaps = 4/404 (0%)
Strand = Plus / Minus
Query: 154 ctcaccctcgcgcgccccgcagcagcgcagccg---ccgacgaacccggcgctgcaggcg 210
||||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct: 449 ctcaccctcgcgccacccgcatcagcgcagccggcgccgacgaccccagcgctgcaggcg 390
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||| | ||||| ||| | ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 389 gcgtacacagcgctccagtcctggaagcggacggccatcttctccgacccatccaacttc 330
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgcgg 330
|| |||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 329 acatccaactgggtcggctcgaacgtgtgcgcctacaacggcatctactgcgcgccgcgt 270
Query: 331 ccctccgacggggcgctggccgtggccggcatcgacct-aaccacgccgacatcgcgggc 389
||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 269 ccctccgacggagcgctcgccgtggccgggatcgacctcaaccacgccgacatcgcgggc 210
Query: 390 cacatccccgccgacctccccctcggcgtgcccgacctggcgctgctccacctcaactcc 449
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 209 cacatccccgccgacctccccctcggcctccccgacctcgcgctgctccacctcaactcc 150
Query: 450 aaccgcttctgcggggtgctgccggacacgctgctccacctgcgcctcctccacgagctc 509
|||||||||||||||||||| |||||||| | |||| || ||||||||||||||||||
Sbjct: 149 aaccgcttctgcggggtgctcccggacaccttcctccgtctccgcctcctccacgagctc 90
Query: 510 gacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 553
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgt 46
Score = 44.1 bits (22), Expect = 0.027
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 64 gccatgatccccgctcctcccgcttccagcgcaggaggcagc 105
||||||||||||||||||| ||| |||| || |||||||||
Sbjct: 542 gccatgatccccgctcctcgcgcctccactgccggaggcagc 501
>gb|CW327393.1|CW327393 104_823_11478723_116_35975_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478723, DNA
sequence
Length = 430
Score = 327 bits (165), Expect = 1e-087
Identities = 359/421 (85%), Gaps = 4/421 (0%)
Strand = Plus / Minus
Query: 636 ccgctcgacgccatcctcctcaactccaaccgcctccgcgggcccatcccggccaacctc 695
|||||||| ||||| |||||||||||||| | ||||| | |||||||||| |||||
Sbjct: 428 ccgctcgatgccatgatcctcaactccaacagtctccgtgaccccatcccggggaacctt 369
Query: 696 ggcaactcgccggcctccgtgctcgtgctcgcgcacaaccgcctcggcggctgcatcccg 755
|| ||||||||||| |||||| | ||||| ||||||||||| || || || || ||||||
Sbjct: 368 gggaactcgccggcgtccgtggtggtgctagcgcacaaccggcttggtggatgtatcccg 309
Query: 756 ccgtcgatagggaggatggcggccacgctcaacgagatcgtcctcatcgacgacgacctc 815
|||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||||||
Sbjct: 308 ccgtcgattgggaggatggcggatacgctcaatgagatcgtgctcattgacgacgacctc 249
Query: 816 accggctgcgtcccgccgcaggtcggcctgctcacgaagctcacggtgttcgacgtcagc 875
|| ||||||||||||||||||||||| |||| | |||| | |||||||| || |||||
Sbjct: 248 actggctgcgtcccgccgcaggtcgggttgcttaggaaggtgacggtgtttgatgtcagt 189
Query: 876 ggcaaccaccttcagggcccgctcccgcccgccgtcggcgggatggccgtcctccagcag 935
|| |||||||| ||||||||||||||||| |||||| |||||||| | | | ||||||
Sbjct: 188 gggaaccacctccagggcccgctcccgccgaccgtcgctgggatggctgccgttcagcag 129
Query: 936 ctcaacgtcgccgggaacctgctcaggggccccgtgccgtcggcggtgtgcggcctgcag 995
||||| || || ||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 128 ctcaatgtggctgggaacctgctcaggggccccgtgccgccggcggtgtgcgcgctgcag 69
Query: 996 gggacgctnanggaacttnaccttaccgaaggacaacttcttcacctngtgccctgggtg 1055
|||||||| | ||||||| | ||||| |||||||||||||||||| | ||||||||||
Sbjct: 68 gggacgctca-ggaacttca-cttac--gaggacaacttcttcacctcgcgccctgggtg 13
Query: 1056 c 1056
|
Sbjct: 12 c 12
>gb|CW265811.1|CW265811 104_735_11232087_148_35267_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232087, DNA
sequence
Length = 515
Score = 268 bits (135), Expect = 1e-069
Identities = 284/331 (85%), Gaps = 4/331 (1%)
Strand = Plus / Plus
Query: 726 gcgcacaaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctc 785
||||||||||| || || || || |||||||||||||| ||||||||||||| ||||||
Sbjct: 1 gcgcacaaccggcttggtggatgtatcccgccgtcgattgggaggatggcggatacgctc 60
Query: 786 aacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctg 845
|| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 61 aatgagatcgtgctcattgacgacgacctcactggctgcgtcccgccgcaggtcgggttg 120
Query: 846 ctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgctcccgccc 905
|| | |||| | |||||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 121 cttaggaaggtgacggtgtttgatgtcagtgggaaccacctccagggcccgctcccgccg 180
Query: 906 gccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacctgctcaggggc 965
|||||| |||||||| | | | ||||||||||| || || ||||||||||||||||||
Sbjct: 181 accgtcgctgggatggctgccgttcagcagctcaatgtggctgggaacctgctcaggggc 240
Query: 966 cccgtgccgtcggcggtgtgcggcctgcaggggacgctnanggaacttnaccttaccgaa 1025
||||||||| |||||||||||| |||||||||||||| | ||||||| ||| ||| |
Sbjct: 241 cccgtgccgccggcggtgtgcgcgctgcaggggacgctca-ggaacttcacc-tac--ga 296
Query: 1026 ggacaacttcttcacctngtgccctgggtgc 1056
|||| |||||||||||| | |||||||||||
Sbjct: 297 ggacgacttcttcacctcgcgccctgggtgc 327
>gb|BG103283.1|BG103283 RHIZ2_18_E05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 424
Score = 248 bits (125), Expect = 9e-064
Identities = 299/357 (83%)
Strand = Plus / Plus
Query: 492 cgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtc 551
||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 24 cgcctcctcgtcgagctcgacctcagcaacaaccgcctcgtcggcgccttcccggccgtc 83
Query: 552 gtgctcgcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggcccc 611
|| |||| ||||| |||||| | ||||||||||||||||||||||||||||||| |
Sbjct: 84 gttctcgacctcccgtcgctcaagttcctcgacctccgcttcaacgacttcgagggcgct 143
Query: 612 atcccgccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctc 671
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 144 atcccgcccgcgctcttcgaccgcccgctcgacgccatcttcctcaaccacaaccgcctc 203
Query: 672 cgcgggcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcac 731
|| |||| |||| | |||| |||||||||||||||| ||||| |||| ||||| ||
Sbjct: 204 cggtcgcccctccccgacaacttcggcaactcgccggcgtccgtcatcgttctcgccgac 263
Query: 732 aaccgcctcggcggctgcatcccgccgtcgatagggaggatggcggccacgctcaacgag 791
||| || |||| || ||| ||||| | | || | ||| |||||||||||||||||
Sbjct: 264 aacagcttcggtgggtgcctcccggccagcctcggcaacatgtcggccacgctcaacgag 323
Query: 792 atcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtcggcctgctc 848
||| |||||||| || ||| |||| | |||||||||||| ||||||||||||||
Sbjct: 324 atcctcctcatcaacaacggcctcgactcctgcgtcccgcccgaggtcggcctgctc 380
>gb|CW075039.1|CW075039 104_354_10806217_116_31831_121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806217, DNA
sequence
Length = 670
Score = 238 bits (120), Expect = 9e-061
Identities = 230/264 (87%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 498 ctccacgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctc 557
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 249 ctccacgagctcgacctcagcaacaaccgcttcgtcggcggcttccccgacgtcgtgctc 308
Query: 558 gcgctcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccat-ccc 616
|| ||| ||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct: 309 cgcctgcccagcctccggtacctcgacctccgcttcaacgacttcgagggccccgtgccc 368
Query: 617 gccgccgctcttcgaccgcccgctcgacgccatcctcctcaactccaaccgcctccgcgg 676
| || | ||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 369 ggcgac-ctcttcgaccgcccgctcgacgccatcttcatcaactccaaccgcttccgctt 427
Query: 677 gcccatcccggccaacctcggcaactcgccggcctccgtgctcgtgctcgcgcacaaccg 736
| ||||| | |||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 428 ccggatccccgacaacgtcggcaactcgccggcgtccgtgctcgtgctcgccaacaacga 487
Query: 737 cctcggcggctgcatcccgccgtc 760
| ||||||||||| ||||| ||||
Sbjct: 488 cttcggcggctgcctcccggcgtc 511
Score = 61.9 bits (31), Expect = 1e-007
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 433 tgctccacctcaactccaaccgcttctgcgg 463
|||||||||||||||||||||||||||||||
Sbjct: 184 tgctccacctcaactccaaccgcttctgcgg 214
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 369 aaccacgccgacatcgcgggccacatccccg 399
|||||||||||| ||||||||||| ||||||
Sbjct: 123 aaccacgccgacctcgcgggccacctccccg 153
Score = 40.1 bits (20), Expect = 0.42
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 284 cgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccg 327
|||| ||| |||||||||| ||| |||| ||||||||||||||
Sbjct: 34 cggggcccgacgtgtgcgcctacggcggcgtctactgcgcgccg 77
>gb|CW236177.1|CW236177 104_692_11215475_148_37500_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215475, DNA
sequence
Length = 371
Score = 220 bits (111), Expect = 2e-055
Identities = 185/209 (88%), Gaps = 3/209 (1%)
Strand = Plus / Minus
Query: 154 ctcaccctcgcgcgccccgcagcagcgcagccg---ccgacgaacccggcgctgcaggcg 210
||||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct: 211 ctcaccctcgcgccacccgcatcagcgcagccggcgccgacgaccccagcgctgcaggcg 152
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||| | ||||| ||| | ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 151 gcgtacacagcgctccagtcctggaagcggacggccatcttctccgacccatccaacttc 92
Query: 271 acctccaactgggcgggccccaacgtgtgcgcgtacaacggcatctactgcgcgccgcgg 330
|| |||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 91 acatccaactgggtcggctcgaacgtgtgcgcctacaacggcatctactgcgcgccgcgt 32
Query: 331 ccctccgacggggcgctggccgtggccgg 359
||||||||||| ||||| |||||||||||
Sbjct: 31 ccctccgacggagcgctcgccgtggccgg 3
Score = 44.1 bits (22), Expect = 0.027
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 64 gccatgatccccgctcctcccgcttccagcgcaggaggcagc 105
||||||||||||||||||| ||| |||| || |||||||||
Sbjct: 304 gccatgatccccgctcctcgcgcctccactgccggaggcagc 263
>gb|CW293035.1|CW293035 104_773_11414430_148_35592_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414430, DNA
sequence
Length = 336
Score = 216 bits (109), Expect = 3e-054
Identities = 237/277 (85%), Gaps = 4/277 (1%)
Strand = Plus / Plus
Query: 780 acgctcaacgagatcgtcctcatcgacgacgacctcaccggctgcgtcccgccgcaggtc 839
|||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 6 acgctcaatgagatcgtgctcattgacgacgacctcactggctgcgtcccgccgcaggtc 65
Query: 840 ggcctgctcacgaagctcacggtgttcgacgtcagcggcaaccaccttcagggcccgctc 899
|| |||| | |||| | |||||||| || ||||| || |||||||| ||||||||||||
Sbjct: 66 gggttgcttaggaaggtgacggtgtttgatgtcagtgggaaccacctccagggcccgctc 125
Query: 900 ccgcccgccgtcggcgggatggccgtcctccagcagctcaacgtcgccgggaacctgctc 959
||||| |||||| |||||||| | | | ||||||||||| || | || |||||||||
Sbjct: 126 ccgccgaccgtcgctgggatggctgccgttcagcagctcaatgtggatggtaacctgctc 185
Query: 960 aggggccccgtgccgtcggcggtgtgcggcctgcaggggacgctnanggaacttnacctt 1019
||||||||||||||| |||||||||||| |||||||||||||| | ||||||| ||| |
Sbjct: 186 aggggccccgtgccgccggcggtgtgcgcgctgcaggggacgctca-ggaacttcacc-t 243
Query: 1020 accgaaggacaacttcttcacctngtgccctgggtgc 1056
|| |||||||||||||||||| | |||||||||||
Sbjct: 244 ac--gaggacaacttcttcacctcgcgccctgggtgc 278
>gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475594, DNA
sequence
Length = 674
Score = 212 bits (107), Expect = 5e-053
Identities = 272/327 (83%)
Strand = Plus / Plus
Query: 522 aaccgcttcgtcggcgccttccccgccgtcgtgctcgcgctcccctcgctccgctacctc 581
|||||| ||||||| |||||||| |||||||| |||| ||||| |||||| | ||||
Sbjct: 1 aaccgcctcgtcggtgccttcccggccgtcgttctcgacctcccgtcgctcaagttcctc 60
Query: 582 gacctccgcttcaacgacttcgagggccccatcccgccgccgctcttcgaccgcccgctc 641
||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct: 61 gacctccgcttcaacgacttcgagggcgctatcccgcccgcgctcttcgaccgcccgctc 120
Query: 642 gacgccatcctcctcaactccaaccgcctccgcgggcccatcccggccaacctcggcaac 701
||||||||| |||||||| |||||||||||| |||| |||||| ||| ||||||||
Sbjct: 121 gacgccatcttcctcaaccacaaccgcctccggtcgcccctcccggaaaacttcggcaac 180
Query: 702 tcgccggcctccgtgctcgtgctcgcgcacaaccgcctcggcggctgcatcccgccgtcg 761
|||||||| ||||| |||||||||| ||||| || ||||||| ||| ||||| |
Sbjct: 181 tcgccggcgtccgtcatcgtgctcgccgacaacagcttcggcgggtgcctcccggccagc 240
Query: 762 atagggaggatggcggccacgctcaacgagatcgtcctcatcgacgacgacctcaccggc 821
| || | ||| |||||||||||||||||||| |||||||| || ||| |||| | |
Sbjct: 241 ctcggcaacatgtcggccacgctcaacgagatcctcctcatcaacaacggcctcgactcc 300
Query: 822 tgcgtcccgccgcaggtcggcctgctc 848
||||||||||| ||||||||||||||
Sbjct: 301 tgcgtcccgcccgaggtcggcctgctc 327
>gb|CD225818.1|CD225818 CCC1_41_E05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_E05_A007 5', mRNA sequence
Length = 615
Score = 135 bits (68), Expect = 1e-029
Identities = 131/152 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| |||||||||||||||||||||||||||||||||| | | || |||||||
Sbjct: 450 ccgacctctcgctgctccacctcaactccaaccgcttctgcggccttgttcccgacacgc 509
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgcttcgtcggcgcct 540
| | || ||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||
Sbjct: 510 tccgccgcctccgcctcctcgtcgagctcgacctcagcaacaaccgcctcgtcggtgcct 569
Query: 541 tccccgccgtcgtgctcgcgctcccctcgctc 572
|||| |||||||| |||| ||||| ||||||
Sbjct: 570 tcccggccgtcgttctcgacctcccgtcgctc 601
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgaccc 260
||||||| ||||||||| ||||||| | | ||||||||||||||||||
Sbjct: 230 gcgtacgtcgcgctgcagacgtggaagcagcaggccatcttctccgaccc 279
>gb|CW288895.1|CW288895 104_767_11412192_148_35540_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412192, DNA
sequence
Length = 298
Score = 133 bits (67), Expect = 4e-029
Identities = 117/133 (87%), Gaps = 3/133 (2%)
Strand = Plus / Minus
Query: 154 ctcaccctcgcgcgccccgcagcagcgcagccg---ccgacgaacccggcgctgcaggcg 210
||||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct: 135 ctcaccctcgcgccacccgcatcagcgcagccggcgccgacgaccccagcgctgcaggcg 76
Query: 211 gcgtacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttc 270
|||||| | ||||| ||| | ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 75 gcgtacacagcgctccagtcctggaagcggacggccatcttctccgacccatccaacttc 16
Query: 271 acctccaactggg 283
|| ||||||||||
Sbjct: 15 acatccaactggg 3
Score = 44.1 bits (22), Expect = 0.027
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 64 gccatgatccccgctcctcccgcttccagcgcaggaggcagc 105
||||||||||||||||||| ||| |||| || |||||||||
Sbjct: 228 gccatgatccccgctcctcgcgcctccactgccggaggcagc 187
>gb|CL161320.1|CL161320 104_352_10805630_114_31826_302 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805630, DNA
sequence
Length = 310
Score = 111 bits (56), Expect = 1e-022
Identities = 109/124 (87%), Gaps = 4/124 (3%)
Strand = Plus / Plus
Query: 933 cagctcaacgtcgccgggaacctgctcaggggccccgtgccgtcggcggtgtgcggcctg 992
|||||||| || || ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 1 cagctcaatgtggctgggaacctgctcaggggccccgtgccgccggcggtgtgcgcgctg 60
Query: 993 caggggacgctnanggaacttnaccttaccgaaggacaacttcttcacctngtgccctgg 1052
||||||||||| | ||||||| ||| ||| |||||||||||||||||| | |||||||
Sbjct: 61 caggggacgctca-ggaacttcacc-tac--gaggacaacttcttcacctcgcgccctgg 116
Query: 1053 gtgc 1056
||||
Sbjct: 117 gtgc 120
>gb|CW216099.1|CW216099 104_648_11194932_148_37119_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194932, DNA
sequence
Length = 682
Score = 103 bits (52), Expect = 3e-020
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 502 acgagctcgacctcagcaacaaccgcttcgtcggcgccttccccgccgtcgtgctcgcgc 561
||||||||||| |||||||||||||||||| || | |||||||||| ||||||||
Sbjct: 62 acgagctcgacgccagcaacaaccgcttcgtgggtcctttccccgccgccgtgctcggcg 121
Query: 562 tcccctcgctccgctacctcgacctccgcttcaacgacttcgagggccccatcccgccgc 621
||| | |||| ||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct: 122 tccgcaagctcagctacctcgacatccggttcaacgacttcgacggccccatcccgccgg 181
Query: 622 cgctcttc 629
|||||||
Sbjct: 182 agctcttc 189
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 441 ctcaactccaaccgcttctgcggggt 466
||||||||||||||||||||||||||
Sbjct: 1 ctcaactccaaccgcttctgcggggt 26
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 718 tcgtgctcgcgcacaaccgcctcggcggctgcatccc 754
|||||||||| |||||| |||||||||||||||||
Sbjct: 278 tcgtgctcgccaacaaccagctcggcggctgcatccc 314
>gb|CW312599.1|CW312599 104_802_11470846_116_35783_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470846, DNA
sequence
Length = 552
Score = 101 bits (51), Expect = 1e-019
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 214 tacgcggcgctgcaggcgtggaaacggacggccatcttctccgacccgtccaacttcacc 273
||||| ||||||||||||||||| || || ||||| || ||||||| |||||||||||||
Sbjct: 319 tacgccgcgctgcaggcgtggaagcgcacagccatgttatccgaccggtccaacttcacc 260
Query: 274 tccaactgggcgggccccaacgtgtgcgcgtacaacggc 312
||||||||| ||| |||||||| ||||| |||||||||
Sbjct: 259 gccaactgggtggggcccaacgtctgcgcatacaacggc 221
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 494 cctcctccacgagctcgacctcagcaacaacc 525
||||||||||||||| ||||||||||||||||
Sbjct: 32 cctcctccacgagcttgacctcagcaacaacc 1
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 414 ggcgtgcccgacctggcgctgctccacctcaactccaaccgcttctgcgg 463
||||| |||||||| || || ||||| ||||||||||||||||||||||
Sbjct: 112 ggcgtccccgacctcgcactcttccacatcaactccaaccgcttctgcgg 63
>gb|CW459001.1|CW459001 fsbb001f205i16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205i16, DNA
sequence
Length = 505
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 410 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 351
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 350 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 304
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 769 ggatggcggccacgctcaacgagatcgtc 797
||||||||| ||||||||||||| |||||
Sbjct: 62 ggatggcgggcacgctcaacgagctcgtc 34
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 636 ccgctcgacgccatcctcctcaac 659
||||||||||||||| ||||||||
Sbjct: 195 ccgctcgacgccatcttcctcaac 172
>gb|BE125039.1|BE125039 DG1_14_C09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 397
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 133 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 192
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 193 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 239
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 636 ccgctcgacgccatcctcctcaac 659
||||||||||||||| ||||||||
Sbjct: 348 ccgctcgacgccatcttcctcaac 371
>gb|BE355969.1|BE355969 DG1_121_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 473
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 129 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 188
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 189 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 235
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 636 ccgctcgacgccatcctcctcaac 659
||||||||||||||| ||||||||
Sbjct: 344 ccgctcgacgccatcttcctcaac 367
>gb|BE357477.1|BE357477 DG1_20_D08.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 600
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 439 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 498
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 545
>gb|BE357902.1|BE357902 DG1_23_H01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 606
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 444 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 503
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 550
>gb|BE358092.1|BE358092 DG1_24_B06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 573
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 438 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 497
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 498 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 544
>gb|BE358383.1|BE358383 DG1_29_B03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 426 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 485
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 486 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 532
>gb|BE359851.1|BE359851 DG1_58_D02.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 612
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 442 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 501
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 548
>gb|BE360095.1|BE360095 DG1_61_C06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 594
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 431 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 490
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 491 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 537
>gb|BE362367.1|BE362367 DG1_86_F01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 439 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 498
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 545
>gb|CD206111.1|CD206111 HS1_20_G11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_20_G11_A012 5', mRNA sequence
Length = 733
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 456 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 515
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 516 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 562
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 636 ccgctcgacgccatcctcctcaac 659
||||||||||||||| ||||||||
Sbjct: 671 ccgctcgacgccatcttcctcaac 694
>gb|CD206853.1|CD206853 HS1_25_E08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_25_E08_A012 5', mRNA sequence
Length = 651
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 469 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 528
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 529 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 575
>gb|CD221105.1|CD221105 CCC1_73_D05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_D05_A007 5', mRNA sequence
Length = 699
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 472 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 531
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 532 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 578
>gb|CD221414.1|CD221414 CCC1_54_A05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_A05_A007 5', mRNA sequence
Length = 675
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 465 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 524
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 571
>gb|CD221425.1|CD221425 CCC1_54_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_H12_A007 5', mRNA sequence
Length = 669
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 461 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 520
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 521 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 567
>gb|CD222028.1|CD222028 CCC1_1_H04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_H04_A007 5', mRNA sequence
Length = 650
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 465 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 524
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 571
>gb|CD222052.1|CD222052 CCC1_1_G01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_G01_A007 5', mRNA sequence
Length = 606
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 462 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 521
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 522 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 568
>gb|CD222528.1|CD222528 CCC1_22_F01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_22_F01_A007 5', mRNA sequence
Length = 660
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 464 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 523
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 524 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 570
>gb|CD223696.1|CD223696 CCC1_29_B11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_29_B11_A007 5', mRNA sequence
Length = 670
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 465 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 524
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 571
>gb|CD224384.1|CD224384 CCC1_33_B12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_33_B12_A007 5', mRNA sequence
Length = 672
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 464 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 523
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 524 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 570
>gb|CD225491.1|CD225491 CCC1_3_E05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_3_E05_A007 5', mRNA sequence
Length = 636
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 468 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 527
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 528 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 574
>gb|CD226226.1|CD226226 CCC1_44_F01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_F01_A007 5', mRNA sequence
Length = 665
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 461 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 520
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 521 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 567
>gb|CD227758.1|CD227758 CCC1_53_D06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_D06_A007 5', mRNA sequence
Length = 663
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 465 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 524
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 571
>gb|CD227777.1|CD227777 CCC1_53_A01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_A01_A007 5', mRNA sequence
Length = 637
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 465 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 524
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 571
>gb|CD228129.1|CD228129 CCC1_5_G06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_G06_A007 5', mRNA sequence
Length = 637
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 467 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 526
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 527 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 573
>gb|CD228429.1|CD228429 CCC1_7_E03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_E03_A007 5', mRNA sequence
Length = 656
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 465 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 524
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 571
>gb|CD228608.1|CD228608 CCC1_8_G05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_G05_A007 5', mRNA sequence
Length = 653
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 470 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 529
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 530 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 576
>gb|CD229044.1|CD229044 CCC1_11_F06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_11_F06_A007 5', mRNA sequence
Length = 629
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 463 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 522
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 523 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 569
>gb|CD229327.1|CD229327 CCC1_14_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_14_A06_A007 5', mRNA sequence
Length = 678
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 458 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 517
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 518 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 564
>gb|CD229517.1|CD229517 CCC1_16_A04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_16_A04_A007 5', mRNA sequence
Length = 633
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 448 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 507
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 508 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 554
>gb|CD432373.1|CD432373 ETH1_29_A12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_29_A12_A002 5', mRNA sequence
Length = 732
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 465 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 524
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 525 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 571
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 636 ccgctcgacgccatcctcctcaac 659
||||||||||||||| ||||||||
Sbjct: 680 ccgctcgacgccatcttcctcaac 703
>gb|CN125369.1|CN125369 RHOH1_10_D11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_D11_A002 5', mRNA sequence
Length = 831
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 456 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 515
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 516 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 562
Score = 40.1 bits (20), Expect = 0.42
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 769 ggatggcggccacgctcaacgagatcgt 796
||||||||| ||||||||||||| ||||
Sbjct: 804 ggatggcgggcacgctcaacgagctcgt 831
>gb|CN126897.1|CN126897 RHOH1_19_G02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_G02_A002 5', mRNA sequence
Length = 813
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 453 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 512
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 513 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 559
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 636 ccgctcgacgccatcctcctcaac 659
||||||||||||||| ||||||||
Sbjct: 668 ccgctcgacgccatcttcctcaac 691
>gb|CX613512.1|CX613512 GABR1_8_C12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_C12_A002 5', mRNA sequence
Length = 795
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 421 ccgacctggcgctgctccacctcaactccaaccgcttctgcggggtgctgccggacacgc 480
||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| |||
Sbjct: 460 ccgacctcgcgctcctccacctcaactccaaccgcttcgccggcggcctgccggagtcgc 519
Query: 481 tgctccacctgcgcctcctccacgagctcgacctcagcaacaaccgc 527
| | | | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 520 tccccaagctgcgcctcctccacgagctcgacgtcagcaacaaccgc 566
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 636 ccgctcgacgccatcctcctcaac 659
||||||||||||||| ||||||||
Sbjct: 675 ccgctcgacgccatcttcctcaac 698
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 392,655
Number of Sequences: 832831
Number of extensions: 392655
Number of successful extensions: 120976
Number of sequences better than 0.5: 119
Number of HSP's better than 0.5 without gapping: 118
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 120451
Number of HSP's gapped (non-prelim): 453
length of query: 1089
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1069
effective length of database: 474,703,049
effective search space: 507457559381
effective search space used: 507457559381
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)