BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724812.2.1
(804 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE364586.2|BE364586 PI1_15_G08.g1_A002 Pathogen induced ... 589 e-166
gb|AW923519.1|AW923519 DG1_52_C12.g1_A002 Dark Grown 1 (DG1... 563 e-159
gb|BE358736.1|BE358736 DG1_31_B04.g1_A002 Dark Grown 1 (DG1... 474 e-132
gb|CF074059.1|CF074059 FE1_21_D10.b1_A002 Iron-deficient se... 398 e-109
gb|CD220596.1|CD220596 CCC1_68_D02.b1_A007 Callus culture/c... 323 1e-086
gb|BG241163.1|BG241163 OV1_39_A04.b1_A002 Ovary 1 (OV1) Sor... 321 6e-086
gb|CN141229.1|CN141229 OX1_50_D06.b1_A002 Oxidatively-stres... 274 1e-071
gb|CN130398.1|CN130398 RHOH1_41_F02.b1_A002 Acid- and alkal... 266 3e-069
gb|CW283440.1|CW283440 104_759_11409248_148_35476_018 Sorgh... 252 4e-065
gb|CB924730.1|CB924730 ABA1_1_A07.g1_A012 Abscisic acid-tre... 246 3e-063
gb|BG240844.1|BG240844 OV1_39_A04.g1_A002 Ovary 1 (OV1) Sor... 230 2e-058
gb|CD219695.1|CD219695 CCC1_58_C08.b1_A007 Callus culture/c... 184 8e-045
gb|CW107875.1|CW107875 104_478_11096833_116_34485_009 Sorgh... 170 1e-040
gb|CW107876.1|CW107876 104_478_11096833_148_34481_009 Sorgh... 143 3e-032
gb|CW021352.1|CW021352 104_160_10431214_5_30005 Sorghum met... 113 3e-023
gb|CL174737.1|CL174737 104_379_10891859_148_31768_227 Sorgh... 111 1e-022
gb|CW450865.1|CW450865 fsbb001f189l06k0 Sorghum methylation... 100 4e-019
gb|CW108847.1|CW108847 104_480_11097740_148_34500_070 Sorgh... 86 6e-015
gb|AW923483.1|AW923483 DG1_52_C12.b1_A002 Dark Grown 1 (DG1... 86 6e-015
gb|CB924624.1|CB924624 ABA1_1_A07.b1_A012 Abscisic acid-tre... 80 4e-013
gb|CW277776.1|CW277776 104_752_11406206_148_35418_063 Sorgh... 70 3e-010
gb|CB926347.1|CB926347 ABA1_8_G03.b1_A012 Abscisic acid-tre... 70 3e-010
gb|CB926950.1|CB926950 ABA1_11_B02.b1_A012 Abscisic acid-tr... 70 3e-010
gb|CD426207.1|CD426207 SA1_19_E09.b1_A002 Salicylic acid-tr... 70 3e-010
gb|CF073799.1|CF073799 FE1_12_E11.b1_A002 Iron-deficient se... 70 3e-010
gb|CN138029.1|CN138029 OX1_61_F11.b1_A002 Oxidatively-stres... 70 3e-010
gb|CB925266.1|CB925266 ABA1_32_F07.b1_A012 Abscisic acid-tr... 66 5e-009
gb|CW173419.1|CW173419 104_585_11156835_148_36550_014 Sorgh... 64 2e-008
gb|CW296771.1|CW296771 104_778_11461693_116_35628_051 Sorgh... 64 2e-008
gb|CW296772.1|CW296772 104_778_11461693_148_35632_051 Sorgh... 64 2e-008
gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 62 8e-008
gb|CL175246.1|CL175246 104_380_10892299_116_31767_283 Sorgh... 60 3e-007
gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorgh... 60 3e-007
gb|CB927938.1|CB927938 ABA1_35_B08.b1_A012 Abscisic acid-tr... 60 3e-007
gb|CN133765.1|CN133765 OX1_18_E06.b1_A002 Oxidatively-stres... 60 3e-007
gb|BZ340250.1|BZ340250 ic37f08.b1 WGS-SbicolorF (JM107 adap... 58 1e-006
gb|CW179115.1|CW179115 104_593_11159929_148_36629_013 Sorgh... 58 1e-006
gb|CW367740.1|CW367740 fsbb001f041f15k0 Sorghum methylation... 58 1e-006
gb|BE599295.1|BE599295 PI1_87_G04.g1_A002 Pathogen induced ... 58 1e-006
gb|CL193419.1|CL193419 104_417_10940920_116_32282_064 Sorgh... 56 5e-006
gb|CW405793.1|CW405793 fsbb001f098i04k0 Sorghum methylation... 56 5e-006
gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation... 56 5e-006
gb|BE356265.1|BE356265 DG1_123_A04.g1_A002 Dark Grown 1 (DG... 56 5e-006
gb|CB925748.1|CB925748 ABA1_23_C10.b1_A012 Abscisic acid-tr... 56 5e-006
gb|CB927803.1|CB927803 ABA1_34_B03.b1_A012 Abscisic acid-tr... 56 5e-006
gb|CF428156.1|CF428156 PH1_13_G05.b1_A002 Phosphorous-defic... 56 5e-006
gb|CN138113.1|CN138113 OX1_61_F11.g1_A002 Oxidatively-stres... 56 5e-006
gb|CW214421.1|CW214421 104_646_11194008_148_37053_090 Sorgh... 54 2e-005
gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorgh... 54 2e-005
gb|CL147747.1|CL147747 104_327_10592607_116_31781_115 Sorgh... 52 8e-005
gb|CL154714.1|CL154714 104_340_10781602_116_31470_082 Sorgh... 52 8e-005
gb|CL175428.1|CL175428 104_381_10892447_116_31765_047 Sorgh... 52 8e-005
gb|CW049083.1|CW049083 104_288_10513818_115_30199 Sorghum m... 52 8e-005
gb|CW056988.1|CW056988 104_298_10517976_115_30157 Sorghum m... 52 8e-005
gb|CW095662.1|CW095662 104_460_11001451_116_34326_066 Sorgh... 52 8e-005
gb|CW150106.1|CW150106 104_549_11142853_116_36303_057 Sorgh... 52 8e-005
gb|CW150107.1|CW150107 104_549_11142853_148_36304_057 Sorgh... 52 8e-005
gb|CW173832.1|CW173832 104_585_11157062_116_36557_053 Sorgh... 52 8e-005
gb|CW334673.1|CW334673 104_833_11482623_116_36070_060 Sorgh... 52 8e-005
gb|CW334674.1|CW334674 104_833_11482623_148_36071_060 Sorgh... 52 8e-005
gb|CW395484.1|CW395484 fsbb001f083i14k0 Sorghum methylation... 52 8e-005
gb|AW677595.1|AW677595 DG1_8_E07.g1_A002 Dark Grown 1 (DG1)... 52 8e-005
gb|BE355032.1|BE355032 DG1_10_A04.g1_A002 Dark Grown 1 (DG1... 52 8e-005
gb|BE358121.1|BE358121 DG1_24_C10.g1_A002 Dark Grown 1 (DG1... 52 8e-005
gb|BE364954.1|BE364954 PI1_22_F04.b1_A002 Pathogen induced ... 52 8e-005
gb|BE364955.1|BE364955 PI1_22_F03.b1_A002 Pathogen induced ... 52 8e-005
gb|BE595892.1|BE595892 PI1_49_E11.g1_A002 Pathogen induced ... 52 8e-005
gb|BE600358.1|BE600358 PI1_95_D08.g1_A002 Pathogen induced ... 52 8e-005
gb|BG052249.1|BG052249 RHIZ2_12_A12.g1_A003 Rhizome2 (RHIZ2... 52 8e-005
gb|BG323036.1|BG323036 EM1_14_B07.g1_A002 Embryo 1 (EM1) So... 52 8e-005
gb|CF484452.1|CF484452 POL1_25_H12.b1_A002 Pollen Sorghum b... 52 8e-005
gb|CN143621.1|CN143621 WOUND1_17_H10.b1_A002 Wounded leaves... 52 8e-005
gb|CX619210.1|CX619210 GABR1_44_D05.b1_A002 GA- or brassino... 52 8e-005
gb|BZ335976.1|BZ335976 hz27h12.b1 WGS-SbicolorF (JM107 adap... 50 3e-004
gb|CL190026.1|CL190026 104_407_10905785_116_32481_067 Sorgh... 50 3e-004
gb|CW071601.1|CW071601 104_323_10591591_114_30471 Sorghum m... 50 3e-004
gb|CW136399.1|CW136399 104_521_11118359_148_34840_090 Sorgh... 50 3e-004
gb|CW179114.1|CW179114 104_593_11159929_116_36625_013 Sorgh... 50 3e-004
gb|CW200286.1|CW200286 104_625_11183983_116_36861_020 Sorgh... 50 3e-004
gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorgh... 50 3e-004
gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorgh... 50 3e-004
gb|CW365974.1|CW365974 fsbb001f038m02k0 Sorghum methylation... 50 3e-004
gb|CW385470.1|CW385470 fsbb001f068p12f0 Sorghum methylation... 50 3e-004
gb|CW385471.1|CW385471 fsbb001f068p12k0 Sorghum methylation... 50 3e-004
gb|CW445252.1|CW445252 fsbb001f170e15k0 Sorghum methylation... 50 3e-004
gb|CW476248.1|CW476248 fsbb001f233a10f0 Sorghum methylation... 50 3e-004
gb|CW479719.1|CW479719 fsbb001f238g06k0 Sorghum methylation... 50 3e-004
gb|CW483111.1|CW483111 fsbb001f244j08f0 Sorghum methylation... 50 3e-004
gb|CW493408.1|CW493408 fsbb001f284c16f0 Sorghum methylation... 50 3e-004
gb|AW679257.1|AW679257 WS1_23_F01.g1_A002 Water-stressed 1 ... 50 3e-004
gb|BE359082.1|BE359082 DG1_38_F04.g1_A002 Dark Grown 1 (DG1... 50 3e-004
gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1... 50 3e-004
gb|BE595691.1|BE595691 PI1_55_E01.g1_A002 Pathogen induced ... 50 3e-004
gb|CX616004.1|CX616004 GABR1_25_F09.b1_A002 GA- or brassino... 50 3e-004
gb|BZ351665.1|BZ351665 hw05b10.g1 WGS-SbicolorF (JM107 adap... 48 0.001
gb|BZ366101.1|BZ366101 ic94f06.g1 WGS-SbicolorF (JM107 adap... 48 0.001
gb|CL193465.1|CL193465 104_417_10940951_116_32278_094 Sorgh... 48 0.001
gb|CW058606.1|CW058606 104_301_10518833_115_30164 Sorghum m... 48 0.001
gb|CW072473.1|CW072473 104_325_10592285_116_30541 Sorghum m... 48 0.001
gb|CW265845.1|CW265845 104_735_11232105_116_35269_041 Sorgh... 48 0.001
gb|CW269433.1|CW269433 104_740_11401840_148_35315_054 Sorgh... 48 0.001
gb|CW270523.1|CW270523 104_742_11402473_116_35332_011 Sorgh... 48 0.001
gb|CW312127.1|CW312127 104_801_11470592_116_36284_018 Sorgh... 48 0.001
gb|CW312128.1|CW312128 104_801_11470592_148_36283_018 Sorgh... 48 0.001
gb|CW392765.1|CW392765 fsbb001f079i12k0 Sorghum methylation... 48 0.001
gb|CW408967.1|CW408967 fsbb001f103b09k0 Sorghum methylation... 48 0.001
gb|CW480630.1|CW480630 fsbb001f239m17k0 Sorghum methylation... 48 0.001
gb|BE355481.1|BE355481 DG1_114_G09.g1_A002 Dark Grown 1 (DG... 48 0.001
gb|BE358427.1|BE358427 DG1_29_F10.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|CX618886.1|CX618886 GABR1_42_F03.b1_A002 GA- or brassino... 48 0.001
gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete seq... 48 0.001
gb|CL187365.1|CL187365 104_402_10900827_114_32432_002 Sorgh... 46 0.005
gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorgh... 46 0.005
gb|CL196913.1|CL196913 104_423_10943386_114_32326_039 Sorgh... 46 0.005
gb|CW056909.1|CW056909 104_298_10517934_114_30156 Sorghum m... 46 0.005
gb|CW157678.1|CW157678 104_561_11147653_116_36391_061 Sorgh... 46 0.005
gb|CW167041.1|CW167041 104_576_11153389_116_36485_061 Sorgh... 46 0.005
gb|CW168213.1|CW168213 104_577_11154024_116_36494_084 Sorgh... 46 0.005
gb|CW363376.1|CW363376 fsbb001f034p04k0 Sorghum methylation... 46 0.005
gb|CW424419.1|CW424419 fsbb001f134l24f0 Sorghum methylation... 46 0.005
gb|CW501587.1|CW501587 fsbb001f297h15k0 Sorghum methylation... 46 0.005
gb|BE126076.1|BE126076 DG1_65_E03.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BG048307.1|BG048307 OV1_16_E10.g1_A002 Ovary 1 (OV1) Sor... 46 0.005
gb|BE362888.2|BE362888 DG1_90_B11.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BM317870.1|BM317870 OV1_16_E10.b9_A002 Ovary 1 (OV1) Sor... 46 0.005
gb|CN137601.1|CN137601 OX1_58_H01.b1_A002 Oxidatively-stres... 46 0.005
gb|CX616980.1|CX616980 GABR1_31_B05.b1_A002 GA- or brassino... 46 0.005
gb|AF527807.1| Sorghum bicolor clone BAC SB_BBc0126P21 php2... 46 0.005
gb|CW063958.1|CW063958 104_309_10522296_114_30136 Sorghum m... 44 0.020
gb|CW063959.1|CW063959 104_309_10522296_115_30140 Sorghum m... 44 0.020
gb|CW089259.1|CW089259 104_434_10948601_114_32582_071 Sorgh... 44 0.020
gb|CW089260.1|CW089260 104_434_10948601_115_32586_071 Sorgh... 44 0.020
gb|CW115454.1|CW115454 104_490_11106569_116_34592_069 Sorgh... 44 0.020
gb|CW130771.1|CW130771 104_513_11115302_116_34783_057 Sorgh... 44 0.020
gb|CW180651.1|CW180651 104_595_11163067_116_36641_076 Sorgh... 44 0.020
gb|CW208733.1|CW208733 104_638_11188843_148_36982_074 Sorgh... 44 0.020
gb|CW223631.1|CW223631 104_659_11203019_116_37185_038 Sorgh... 44 0.020
gb|CW223632.1|CW223632 104_659_11203019_148_37186_038 Sorgh... 44 0.020
gb|CW239896.1|CW239896 104_698_11217909_116_37504_089 Sorgh... 44 0.020
gb|CW239897.1|CW239897 104_698_11217909_148_37505_089 Sorgh... 44 0.020
gb|CW273802.1|CW273802 104_746_11404095_116_35362_056 Sorgh... 44 0.020
gb|CW288258.1|CW288258 104_766_11411855_148_35535_086 Sorgh... 44 0.020
gb|CW313572.1|CW313572 104_803_11471355_116_35786_002 Sorgh... 44 0.020
gb|CW313573.1|CW313573 104_803_11471355_148_35790_002 Sorgh... 44 0.020
gb|CW408694.1|CW408694 fsbb001f102l04f0 Sorghum methylation... 44 0.020
gb|CW409172.1|CW409172 fsbb001f103f24k0 Sorghum methylation... 44 0.020
gb|CW463308.1|CW463308 fsbb001f211n13f0 Sorghum methylation... 44 0.020
gb|CW496055.1|CW496055 fsbb001f288b11k0 Sorghum methylation... 44 0.020
gb|BE358440.1|BE358440 DG1_29_G10.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|BE360432.1|BE360432 DG1_63_A06.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|BG410775.1|BG410775 EM1_25_F05.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|CD212879.1|CD212879 HS1_17_F07.b1_A012 Heat-shocked seed... 44 0.020
gb|CD221508.1|CD221508 CCC1_55_C03.b1_A007 Callus culture/c... 44 0.020
gb|CD228503.1|CD228503 CCC1_8_D11.b1_A007 Callus culture/ce... 44 0.020
gb|CD236389.1|CD236389 SS1_34_G08.b1_A012 Salt-stressed see... 44 0.020
gb|CD428859.1|CD428859 ETH1_1_C11.b1_A002 Ethylene-treated ... 44 0.020
gb|CD429410.1|CD429410 ETH1_4_G04.b1_A002 Ethylene-treated ... 44 0.020
gb|CF489797.1|CF489797 POL1_59_E03.g1_A002 Pollen Sorghum b... 44 0.020
gb|CN126572.1|CN126572 RHOH1_18_A06.b1_A002 Acid- and alkal... 44 0.020
gb|CN137840.1|CN137840 OX1_60_B05.b1_A002 Oxidatively-stres... 44 0.020
gb|CN137907.1|CN137907 OX1_60_B05.g1_A002 Oxidatively-stres... 44 0.020
gb|CX606448.1|CX606448 ANR1_3_C08.b1_A002 Anaerobic roots S... 44 0.020
gb|CX607334.1|CX607334 ANR1_8_A10.b1_A002 Anaerobic roots S... 44 0.020
gb|CX607843.1|CX607843 ANR1_31_C11.b1_A002 Anaerobic roots ... 44 0.020
gb|CX608331.1|CX608331 ANR1_38_B01.b1_A002 Anaerobic roots ... 44 0.020
gb|CX608499.1|CX608499 ANR1_39_A08.b1_A002 Anaerobic roots ... 44 0.020
gb|CX613398.1|CX613398 GABR1_8_A03.b1_A002 GA- or brassinol... 44 0.020
gb|CX617551.1|CX617551 GABR1_34_H10.b1_A002 GA- or brassino... 44 0.020
gb|CX621626.1|CX621626 GABR1_59_E11.b1_A002 GA- or brassino... 44 0.020
gb|CX623017.1|CX623017 GABR1_67_F09.b1_A002 GA- or brassino... 44 0.020
gb|CX623201.1|CX623201 GABR1_68_G03.b1_A002 GA- or brassino... 44 0.020
gb|BH246238.1|BH246238 pSB1842.2 S. bicolor BTx623 PstI-dig... 42 0.078
gb|CL149321.1|CL149321 104_330_10777748_114_31353_068 Sorgh... 42 0.078
gb|CL188255.1|CL188255 104_404_10901465_116_32448_071 Sorgh... 42 0.078
gb|CL189680.1|CL189680 104_407_10905541_116_32481_061 Sorgh... 42 0.078
gb|CW054459.1|CW054459 104_295_10516543_115_30176 Sorghum m... 42 0.078
gb|CW096606.1|CW096606 104_462_11001990_148_34353_025 Sorgh... 42 0.078
gb|CW097799.1|CW097799 104_464_11002660_148_34365_014 Sorgh... 42 0.078
gb|CW144279.1|CW144279 104_536_11137858_116_34967_041 Sorgh... 42 0.078
gb|CW159792.1|CW159792 104_566_11149541_116_36421_029 Sorgh... 42 0.078
gb|CW234267.1|CW234267 104_687_11213889_148_37382_033 Sorgh... 42 0.078
gb|CW262205.1|CW262205 104_729_11229928_116_35210_054 Sorgh... 42 0.078
gb|CW264348.1|CW264348 104_733_11231241_148_35249_045 Sorgh... 42 0.078
gb|CW298408.1|CW298408 104_781_11462563_116_35658_080 Sorgh... 42 0.078
gb|CW355391.1|CW355391 fsbb001f020a02f0 Sorghum methylation... 42 0.078
gb|CW391036.1|CW391036 fsbb001f076p16f0 Sorghum methylation... 42 0.078
gb|CW412401.1|CW412401 fsbb001f108a11f0 Sorghum methylation... 42 0.078
gb|CW434530.1|CW434530 fsbb001f150e10k0 Sorghum methylation... 42 0.078
gb|CW434797.1|CW434797 fsbb001f150k16k0 Sorghum methylation... 42 0.078
gb|CW449893.1|CW449893 fsbb001f188e03k0 Sorghum methylation... 42 0.078
gb|CW460141.1|CW460141 fsbb001f207d15f0 Sorghum methylation... 42 0.078
gb|CW473657.1|CW473657 fsbb001f229c07f0 Sorghum methylation... 42 0.078
gb|CW495508.1|CW495508 fsbb001f287e23k0 Sorghum methylation... 42 0.078
gb|CW496448.1|CW496448 fsbb001f288l08k0 Sorghum methylation... 42 0.078
gb|CW500380.1|CW500380 fsbb001f295k23k0 Sorghum methylation... 42 0.078
gb|BE596599.1|BE596599 PI1_58_B10.g1_A002 Pathogen induced ... 42 0.078
gb|CB926634.1|CB926634 ABA1_3_D04.b1_A012 Abscisic acid-tre... 42 0.078
gb|CD207584.1|CD207584 HS1_33_G09.g1_A012 Heat-shocked seed... 42 0.078
gb|CD224613.1|CD224613 CCC1_35_F08.b1_A007 Callus culture/c... 42 0.078
gb|CN130059.1|CN130059 RHOH1_39_B11.b1_A002 Acid- and alkal... 42 0.078
gb|CX613268.1|CX613268 GABR1_7_E10.b1_A002 GA- or brassinol... 42 0.078
gb|BZ781167.1|BZ781167 ii24g06.g1 WGS-SbicolorF (DH5a methy... 40 0.31
gb|CL147748.1|CL147748 104_327_10592607_148_31780_115 Sorgh... 40 0.31
gb|CL163790.1|CL163790 104_357_10807410_114_31812_162 Sorgh... 40 0.31
gb|CL164603.1|CL164603 104_359_10808021_116_31817_005 Sorgh... 40 0.31
gb|CW030119.1|CW030119 104_258_10500071_116_30404 Sorghum m... 40 0.31
gb|CW069511.1|CW069511 104_319_10525937_1_30093 Sorghum met... 40 0.31
gb|CW084020.1|CW084020 104_426_10945525_116_32440_055 Sorgh... 40 0.31
gb|CW084531.1|CW084531 104_427_10945849_116_32511_009 Sorgh... 40 0.31
gb|CW120282.1|CW120282 104_497_11109239_148_34644_086 Sorgh... 40 0.31
gb|CW142907.1|CW142907 104_534_11137119_116_34948_056 Sorgh... 40 0.31
gb|CW142908.1|CW142908 104_534_11137119_148_34944_056 Sorgh... 40 0.31
gb|CW234266.1|CW234266 104_687_11213889_116_37381_033 Sorgh... 40 0.31
gb|CW264925.1|CW264925 104_734_11231579_116_35257_048 Sorgh... 40 0.31
gb|CW264926.1|CW264926 104_734_11231579_148_35261_048 Sorgh... 40 0.31
gb|CW265350.1|CW265350 104_734_11231825_148_35261_069 Sorgh... 40 0.31
gb|CW278981.1|CW278981 104_753_11406838_116_35426_085 Sorgh... 40 0.31
gb|CW279975.1|CW279975 104_755_11407368_116_35442_096 Sorgh... 40 0.31
gb|CW338052.1|CW338052 104_838_11484537_148_36123_043 Sorgh... 40 0.31
gb|CW348962.1|CW348962 fsbb001f009j08f0 Sorghum methylation... 40 0.31
gb|CW365767.1|CW365767 fsbb001f038h08f0 Sorghum methylation... 40 0.31
gb|CW365768.1|CW365768 fsbb001f038h08k0 Sorghum methylation... 40 0.31
gb|CW366382.1|CW366382 fsbb001f039f21k0 Sorghum methylation... 40 0.31
gb|CW382423.1|CW382423 fsbb001f064g01k0 Sorghum methylation... 40 0.31
gb|CW386864.1|CW386864 fsbb001f070p11f0 Sorghum methylation... 40 0.31
gb|CW386865.1|CW386865 fsbb001f070p11k0 Sorghum methylation... 40 0.31
gb|CW388737.1|CW388737 fsbb001f073k02k0 Sorghum methylation... 40 0.31
gb|CW395395.1|CW395395 fsbb001f083g14k0 Sorghum methylation... 40 0.31
gb|CW400527.1|CW400527 fsbb001f090o05k0 Sorghum methylation... 40 0.31
gb|CW408966.1|CW408966 fsbb001f103b09f0 Sorghum methylation... 40 0.31
gb|CW442651.1|CW442651 fsbb001f162g15k0 Sorghum methylation... 40 0.31
gb|CW461886.1|CW461886 fsbb001f209m04f0 Sorghum methylation... 40 0.31
gb|CW498960.1|CW498960 fsbb001f293h15f0 Sorghum methylation... 40 0.31
gb|CW498961.1|CW498961 fsbb001f293h15k0 Sorghum methylation... 40 0.31
gb|BE355206.1|BE355206 DG1_10_G03.g1_A002 Dark Grown 1 (DG1... 40 0.31
gb|BE356231.1|BE356231 DG1_123_G05.g1_A002 Dark Grown 1 (DG... 40 0.31
gb|BE363621.1|BE363621 WS1_64_B07.g1_A002 Water-stressed 1 ... 40 0.31
gb|BE593270.1|BE593270 WS1_99_F12.g1_A002 Water-stressed 1 ... 40 0.31
gb|CB925243.1|CB925243 ABA1_32_F05.b1_A012 Abscisic acid-tr... 40 0.31
gb|CF427831.1|CF427831 PH1_11_E10.b1_A002 Phosphorous-defic... 40 0.31
gb|CF429042.1|CF429042 PH1_19_F01.b1_A002 Phosphorous-defic... 40 0.31
gb|CF486816.1|CF486816 POL1_39_H12.g1_A002 Pollen Sorghum b... 40 0.31
gb|CN124792.1|CN124792 RHOH1_7_A02.b1_A002 Acid- and alkali... 40 0.31
gb|CN127822.1|CN127822 RHOH1_25_F09.b1_A002 Acid- and alkal... 40 0.31
gb|CN142613.1|CN142613 WOUND1_11_C11.b1_A002 Wounded leaves... 40 0.31
gb|CX609667.1|CX609667 ANR1_14_B08.b1_A002 Anaerobic roots ... 40 0.31
>gb|BE364586.2|BE364586 PI1_15_G08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 584
Score = 589 bits (297), Expect = e-166
Identities = 404/439 (92%), Gaps = 3/439 (0%)
Strand = Plus / Plus
Query: 59 cctggactccgtggccgggcgcggcgcggtggtgccttggagcccccaggaccgcgtgct 118
||||||| ||||||||||||| ||| |||||||||| |||||||| |||||| | |||||
Sbjct: 1 cctggacgccgtggccgggcggggcacggtggtgccgtggagcccgcaggacagggtgct 60
Query: 119 ggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctggagac 178
||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||
Sbjct: 61 ggcgcacccgtccacggcctgcttcctcacgcactgcggctggaactcgacgctggagac 120
Query: 179 catcgcggcgggcgtgcccgtggtggccttcccgcagtggggcgaccagtgcacggacgc 238
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 catcgcggcgggcgtgcccgtcgtggcgttcccgcagtggggcgaccagtgcacggacgc 180
Query: 239 caagttcctggtggacgagctcgggatgggtgtccgcctccgcgg---gccgctgcggcg 295
||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||
Sbjct: 181 caagttcctggtggaggagctcaggatgggggtccgcctccgcgggtcgccgctgcggcg 240
Query: 296 ggacgccgtgcgggaggcggtggacgccgcagtggcggggcccgaggccgacgcgatgct 355
|||||||||||||||||||||||| || || ||||| ||| ||||||| ||||| |||||
Sbjct: 241 ggacgccgtgcgggaggcggtggaagcggccgtggccggggccgaggcagacgccatgct 300
Query: 356 cgccagcgccaggaggtggagcgcggcggcgcgggaggccgtggcgcccggcgggtcctc 415
|||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct: 301 cgccagcgccaggaggtggagcgccgcggcgagggaggccgtggcgcccggagggtcctc 360
Query: 416 ggacgcgcacgtccaggcgttcgtggacgaggtgtcccggcgagcttgtggcgtgcaagt 475
|||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct: 361 ggacaagcacgtccaggcgttcgtggacgaggtggcacggcgagcgtgtggcgtgcaagc 420
Query: 476 ggctaaggtcgtgccgccg 494
|||||||||||||||||||
Sbjct: 421 ggctaaggtcgtgccgccg 439
>gb|AW923519.1|AW923519 DG1_52_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 531
Score = 563 bits (284), Expect = e-159
Identities = 388/422 (91%), Gaps = 3/422 (0%)
Strand = Plus / Plus
Query: 76 ggcgcggcgcggtggtgccttggagcccccaggaccgcgtgctggcgcacccgtccaccg 135
|||| ||| |||||||||| |||||||| |||||| | |||||||||||||||||||| |
Sbjct: 1 ggcggggcacggtggtgccgtggagcccgcaggacagggtgctggcgcacccgtccacgg 60
Query: 136 cctgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgc 195
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 61 cctgcttcctcacgcactgcggctggaactcgacgctggagaccatcgcggcgggcgtgc 120
Query: 196 ccgtggtggccttcccgcagtggggcgaccagtgcacggacgccaagttcctggtggacg 255
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 121 ccgtcgtggcgttcccgcagtggggcgaccagtgcacggacgccaagttcctggtggagg 180
Query: 256 agctcgggatgggtgtccgcctccgcgg---gccgctgcggcgggacgccgtgcgggagg 312
||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 agctcaggatgggggtccgcctccgcgggtcgccgctgcggcgggacgccgtgcgggagg 240
Query: 313 cggtggacgccgcagtggcggggcccgaggccgacgcgatgctcgccagcgccaggaggt 372
||||||| || || ||||| ||| ||||||| ||||| ||||||||||||||||||||||
Sbjct: 241 cggtggaagcggccgtggccggggccgaggcagacgccatgctcgccagcgccaggaggt 300
Query: 373 ggagcgcggcggcgcgggaggccgtggcgcccggcgggtcctcggacgcgcacgtccagg 432
||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 301 ggagcgccgcggcgagggaggccgtggcgcccggagggtcctcggacaagcacgtccagg 360
Query: 433 cgttcgtggacgaggtgtcccggcgagcttgtggcgtgcaagtggctaaggtcgtgccgc 492
||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||
Sbjct: 361 cgttcgtggacgaggtggcacggcgagcgtgtggcgtgcaagcggctaaggtcgtgccgc 420
Query: 493 cg 494
||
Sbjct: 421 cg 422
>gb|BE358736.1|BE358736 DG1_31_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 474 bits (239), Expect = e-132
Identities = 322/349 (92%), Gaps = 3/349 (0%)
Strand = Plus / Plus
Query: 149 gcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcccgtggtggcctt 208
||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1 gcactgcggctggaactcgacgctggagaccatcgcggcgggcgtgcccgtcgtggcgtt 60
Query: 209 cccgcagtggggcgaccagtgcacggacgccaagttcctggtggacgagctcgggatggg 268
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 61 cccgcagtggggcgaccagtgcacggacgccaagttcctggtggaggagctcaggatggg 120
Query: 269 tgtccgcctccgcggg---ccgctgcggcgggacgccgtgcgggaggcggtggacgccgc 325
||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 121 ggtccgcctccgcgggtcgccgctgcggcgggacgccgtgcgggaggcggtggaagcggc 180
Query: 326 agtggcggggcccgaggccgacgcgatgctcgccagcgccaggaggtggagcgcggcggc 385
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 181 cgtggccggggccgaggcagacgccatgctcgccagcgccaggaggtggagcgccgcggc 240
Query: 386 gcgggaggccgtggcgcccggcgggtcctcggacgcgcacgtccaggcgttcgtggacga 445
| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 241 gagggaggccgtggcgcccggagggtcctcggacaagcacgtccaggcgttcgtggacga 300
Query: 446 ggtgtcccggcgagcttgtggcgtgcaagtggctaaggtcgtgccgccg 494
|||| | |||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 301 ggtggcacggcgagcgtgtggcgtgcaagcggctaaggtcgtgccgccg 349
>gb|CF074059.1|CF074059 FE1_21_D10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_D10_A002 3', mRNA sequence
Length = 594
Score = 398 bits (201), Expect = e-109
Identities = 269/291 (92%), Gaps = 3/291 (1%)
Strand = Plus / Plus
Query: 207 ttcccgcagtggggcgaccagtgcacggacgccaagttcctggtggacgagctcgggatg 266
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 2 ttcccgcagtggggcgaccagtgcacggacgccaagttcctggtggaggagctcaggatg 61
Query: 267 ggtgtccgcctccgcggg---ccgctgcggcgggacgccgtgcgggaggcggtggacgcc 323
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 62 ggggtccgcctccgcgggtcgccgctgcggcgggacgccgtgcgggaggcggtggaagcg 121
Query: 324 gcagtggcggggcccgaggccgacgcgatgctcgccagcgccaggaggtggagcgcggcg 383
|| ||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 122 gccgtggccggggccgaggcagacgccatgctcgccagcgccaggaggtggagcgccgcg 181
Query: 384 gcgcgggaggccgtggcgcccggcgggtcctcggacgcgcacgtccaggcgttcgtggac 443
||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 182 gcgagggaggccgtggcgcccggagggtcctcggacaagcacgtccaggcgttcgtggac 241
Query: 444 gaggtgtcccggcgagcttgtggcgtgcaagtggctaaggtcgtgccgccg 494
|||||| | |||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 242 gaggtggcacggcgagcgtgtggcgtgcaagcggctaaggtcgtgccgccg 292
>gb|CD220596.1|CD220596 CCC1_68_D02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_D02_A007 3', mRNA sequence
Length = 393
Score = 323 bits (163), Expect = 1e-086
Identities = 237/261 (90%), Gaps = 3/261 (1%)
Strand = Plus / Plus
Query: 237 gccaagttcctggtggacgagctcgggatgggtgtccgcctccgcggg---ccgctgcgg 293
||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||
Sbjct: 1 gccaagttcctggtggaggagctcaggatgggggtccgcctccgcgggtcgccgctgcgg 60
Query: 294 cgggacgccgtgcgggaggcggtggacgccgcagtggcggggcccgaggccgacgcgatg 353
|||||| ||||||||||||||||||| || || ||||| ||| ||||||| ||||| |||
Sbjct: 61 cgggaccccgtgcgggaggcggtggaagcggccgtggccggggccgaggcagacgccatg 120
Query: 354 ctcgccagcgccaggaggtggagcgcggcggcgcgggaggccgtggcgcccggcgggtcc 413
|||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||
Sbjct: 121 ctcgccagcgccaggaggtggagccccgcggcgagggaggccgtggcgcccggagggtcc 180
Query: 414 tcggacgcgcacgtccaggcgttcgtggacgaggtgtcccggcgagcttgtggcgtgcaa 473
|||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 181 tcggacaagcacgtccaggcgttcgtggacgaggtggcacggcgagcgtgtggcgtgcaa 240
Query: 474 gtggctaaggtcgtgccgccg 494
| |||||||||||||||||||
Sbjct: 241 gcggctaaggtcgtgccgccg 261
>gb|BG241163.1|BG241163 OV1_39_A04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 321 bits (162), Expect = 6e-086
Identities = 235/258 (91%), Gaps = 1/258 (0%)
Strand = Plus / Plus
Query: 10 ttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctggactcc 68
||||||||||||||||| ||| |||||||| || || ||||| |||||||||||| ||
Sbjct: 152 ttcctgtgggtggtccggccggacacccgggagcacctcccggaagggttcctggacgcc 211
Query: 69 gtggccgggcgcggcgcggtggtgccttggagcccccaggaccgcgtgctggcgcacccg 128
||||||||||| ||| |||||||||| |||||||| |||||| | |||||||||||||||
Sbjct: 212 gtggccgggcggggcacggtggtgccgtggagcccgcaggacagggtgctggcgcacccg 271
Query: 129 tccaccgcctgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcg 188
||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 272 tccacggcctgcttcctcacgcactgcggctggaactcgacgctggagaccatcgcggcg 331
Query: 189 ggcgtgcccgtggtggccttcccgcagtggggcgaccagtgcacggacgccaagttcctg 248
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggcgtgcccgtcgtggcgttcccgcagtggggcgaccagtgcacggacgccaagttcctg 391
Query: 249 gtggacgagctcgggatg 266
||||| |||||| |||||
Sbjct: 392 gtggaggagctcaggatg 409
>gb|CN141229.1|CN141229 OX1_50_D06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_D06_A002 3', mRNA sequence
Length = 758
Score = 274 bits (138), Expect = 1e-071
Identities = 370/446 (82%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 4 cggcccttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctg 62
||||||||||| |||||||| || ||| |||| || || |||| || || ||||||||
Sbjct: 159 cggcccttcctatgggtggtgcggccggacactcgccctttgctccccgaggggttcctt 218
Query: 63 gactccgtggccgggcgcggcgcggtggtgccttggagcccccaggaccgcgtgctggcg 122
||| |||| ||||| |||||| ||| ||||| |||||||| ||||||||||||||||||
Sbjct: 219 gacgccgtcgccggtcgcggcatggtcgtgccgtggagcccgcaggaccgcgtgctggcg 278
Query: 123 cacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctggagaccatc 182
||| | ||||| || |||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct: 279 cacgcctccacggcgtgcttcctgacgcactgcgggtggaactccacgctcgagacggtc 338
Query: 183 gcggcgggcgtgcccgtggtggccttcccgcagtggggcgaccagtgcacggacgccaag 242
|| || || || |||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 339 gccgccggtgttcccgtgctggctttcccacagtggggcgaccagtgcacggacgccaag 398
Query: 243 ttcctggtggacgagctcgggatgggtgtccgcctccgcgggccgctgcggcgggacgcc 302
|||||||| |||||||| ||||||| |||| |||||||| |||||||||||||| |
Sbjct: 399 ttcctggtcgacgagcttaggatgggcgtccacctccgcgccccgctgcggcgggagggt 458
Query: 303 gtgcgggaggcggtggacgccgcagtggcggggcccgaggccgacgcgatgctcgccagc 362
||||| ||||| ||||| || ||| | | ||||| ||||| ||||| |||||||||| |
Sbjct: 459 gtgcgcgaggctgtggatgcagcaacgacagggccagaggctgacgccatgctcgccaac 518
Query: 363 gccaggaggtggagcgcggcggcgcgggaggccgtggcgcccggcgggtcctcggacgcg 422
|| | | ||||||||||||||||||| || ||| |||| || ||||| |||||| |
Sbjct: 519 gctaagtcctggagcgcggcggcgcgggccgcagtgacgccaggagggtcgtcggaccgg 578
Query: 423 cacgtccaggcgttcgtggacgaggt 448
|| || ||||||||| | ||||||||
Sbjct: 579 catgttcaggcgttcatcgacgaggt 604
>gb|CN130398.1|CN130398 RHOH1_41_F02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_F02_A002 3', mRNA sequence
Length = 712
Score = 266 bits (134), Expect = 3e-069
Identities = 369/446 (82%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 4 cggcccttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctg 62
||||||||||| |||||||| || ||| |||| || || |||| || || ||||||||
Sbjct: 99 cggcccttcctatgggtggtgcggccggacactcgccctttgctccccgaggggttcctt 158
Query: 63 gactccgtggccgggcgcggcgcggtggtgccttggagcccccaggaccgcgtgctggcg 122
||| |||| ||||| |||||| ||| ||||| |||||||| ||||||||||||||||||
Sbjct: 159 gacgccgtcgccggtcgcggcatggtcgtgccgtggagcccgcaggaccgcgtgctggcg 218
Query: 123 cacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctggagaccatc 182
||| | ||||| || |||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct: 219 cacgcctccacggcgtgcttcctgacgcactgcgggtggaactccacgctcgagacggtc 278
Query: 183 gcggcgggcgtgcccgtggtggccttcccgcagtggggcgaccagtgcacggacgccaag 242
|| || || || |||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 279 gccgccggtgttcccgtgctggctttcccacagtggggcgaccagtgcacggacgccaag 338
Query: 243 ttcctggtggacgagctcgggatgggtgtccgcctccgcgggccgctgcggcgggacgcc 302
|||||||| |||||||| ||||||| |||| |||||||| |||||||||||||| |
Sbjct: 339 ttcctggtcgacgagcttaggatgggcgtccacctccgcgccccgctgcggcgggagggt 398
Query: 303 gtgcgggaggcggtggacgccgcagtggcggggcccgaggccgacgcgatgctcgccagc 362
||||| ||||| ||||| || || | | ||||| ||||| ||||| |||||||||| |
Sbjct: 399 gtgcgcgaggctgtggatgcagcgacgacagggccagaggctgacgccatgctcgccaac 458
Query: 363 gccaggaggtggagcgcggcggcgcgggaggccgtggcgcccggcgggtcctcggacgcg 422
|| | | ||||||||||||||||||| || ||| |||| || ||||| |||||| |
Sbjct: 459 gctaagtcctggagcgcggcggcgcgggccgcagtgacgccaggagggtcgtcggaccgg 518
Query: 423 cacgtccaggcgttcgtggacgaggt 448
|| || ||||||||| | ||||||||
Sbjct: 519 catgttcaggcgttcatcgacgaggt 544
>gb|CW283440.1|CW283440 104_759_11409248_148_35476_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409248, DNA
sequence
Length = 436
Score = 252 bits (127), Expect = 4e-065
Identities = 328/395 (83%)
Strand = Plus / Minus
Query: 54 gggttcctggactccgtggccgggcgcggcgcggtggtgccttggagcccccaggaccgc 113
|||||||| ||| |||| ||||| |||||| ||| ||||| |||||||| |||||||||
Sbjct: 407 gggttccttgacgccgtcgccggtcgcggcatggtcgtgccgtggagcccgcaggaccgc 348
Query: 114 gtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctg 173
|||||||||||| | ||||| | |||||||| ||||||||||||||||||||||| ||
Sbjct: 347 gtgctggcgcacgcctccacggagtgcttcctgacgcactgcgggtggaactccacgctc 288
Query: 174 gagaccatcgcggcgggcgtgcccgtggtggccttcccgcagtggggcgaccagtgcacg 233
||||| |||| || || || |||||| |||| ||||| |||||||||||||||||||||
Sbjct: 287 gagacggtcgccgccggtgttcccgtgctggctttcccacagtggggcgaccagtgcacg 228
Query: 234 gacgccaagttcctggtggacgagctcgggatgggtgtccgcctccgcgggccgctgcgg 293
||||||||||||||||| |||||||| ||||||| |||| |||||||| |||||||||
Sbjct: 227 gacgccaagttcctggtcgacgagcttaggatgggcgtccacctccgcgccccgctgcgg 168
Query: 294 cgggacgccgtgcgggaggcggtggacgccgcagtggcggggcccgaggccgacgcgatg 353
||||| | ||||| ||||| ||||| || ||| | | ||||| ||||| ||||| |||
Sbjct: 167 cgggagggtgtgcgcgaggctgtggatgcagcaacgacagggccagaggctgacgccatg 108
Query: 354 ctcgccagcgccaggaggtggagcgcggcggcgcgggaggccgtggcgcccggcgggtcc 413
||||||| || | | ||||||||||||||||||| || ||| |||| || |||||
Sbjct: 107 ctcgccaacggtaagtcttggagcgcggcggcgcgggccgcagtgacgccaggagggtcg 48
Query: 414 tcggacgcgcacgtccaggcgttcgtggacgaggt 448
|||||| ||| || ||||||||| | ||||||||
Sbjct: 47 tcggaccggcatgttcaggcgttcatcgacgaggt 13
>gb|CB924730.1|CB924730 ABA1_1_A07.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_1_A07_A012 5', mRNA sequence
Length = 620
Score = 246 bits (124), Expect = 3e-063
Identities = 174/191 (91%)
Strand = Plus / Minus
Query: 304 tgcgggaggcggtggacgccgcagtggcggggcccgaggccgacgcgatgctcgccagcg 363
|||||||||||||||| || | ||||| ||| ||||||| ||||| |||||||||||||
Sbjct: 620 tgcgggaggcggtggaagcgnccgtggccggggccgaggcagacgccatgctcgccagcg 561
Query: 364 ccaggaggtggagcgcggcggcgcgggaggccgtggcgcccggcgggtcctcggacgcgc 423
|||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| ||
Sbjct: 560 ccaggaggtggagcgccgcggcgagggaggccgtggcgcccggagggtcctcggacaagc 501
Query: 424 acgtccaggcgttcgtggacgaggtgtcccggcgagcttgtggcgtgcaagtggctaagg 483
|||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||
Sbjct: 500 acgtccaggcgttcgtggacgaggtggcacggcgagcgtgtggcgtgcaagcggctaagg 441
Query: 484 tcgtgccgccg 494
|||||||||||
Sbjct: 440 tcgtgccgccg 430
>gb|BG240844.1|BG240844 OV1_39_A04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 480
Score = 230 bits (116), Expect = 2e-058
Identities = 155/168 (92%)
Strand = Plus / Plus
Query: 327 gtggcggggcccgaggccgacgcgatgctcgccagcgccaggaggtggagcgcggcggcg 386
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 4 gtggccggggccgaggcagacgccatgctcgccagcgccaggaggtggagcgccgcggcg 63
Query: 387 cgggaggccgtggcgcccggcgggtcctcggacgcgcacgtccaggcgttcgtggacgag 446
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 64 agggaggccgtggcgcccggagggtcctcggacaagcacgtccaggcgttcgtggacgag 123
Query: 447 gtgtcccggcgagcttgtggcgtgcaagtggctaaggtcgtgccgccg 494
||| | |||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 124 gtggcacggcgagcgtgtggcgtgcaagcggctaaggtcgtgccgccg 171
>gb|CD219695.1|CD219695 CCC1_58_C08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_C08_A007 3', mRNA sequence
Length = 218
Score = 184 bits (93), Expect = 8e-045
Identities = 120/129 (93%)
Strand = Plus / Plus
Query: 366 aggaggtggagcgcggcggcgcgggaggccgtggcgcccggcgggtcctcggacgcgcac 425
|||||||||||||| |||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 1 aggaggtggagcgccgcggcgagggaggccgtggcgcccggagggtcctcggacaagcac 60
Query: 426 gtccaggcgttcgtggacgaggtgtcccggcgagcttgtggcgtgcaagtggctaaggtc 485
|||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||
Sbjct: 61 gtccaggcgttcgtggacgaggtggcacggcgagcgtgtggcgtgcaagcggctaaggtc 120
Query: 486 gtgccgccg 494
|||||||||
Sbjct: 121 gtgccgccg 129
>gb|CW107875.1|CW107875 104_478_11096833_116_34485_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096833, DNA
sequence
Length = 573
Score = 170 bits (86), Expect = 1e-040
Identities = 198/234 (84%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 4 cggcccttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctg 62
||||||||||| |||||||| || ||| |||| || || |||| || || ||||||||
Sbjct: 340 cggcccttcctatgggtggtgcggccggacactcgccctttgctccccgaggggttcctt 399
Query: 63 gactccgtggccgggcgcggcgcggtggtgccttggagcccccaggaccgcgtgctggcg 122
||| |||| ||||| |||||| ||| ||||| |||||||| ||||||||||||||||||
Sbjct: 400 gacgccgtcgccggtcgcggcatggtcgtgccgtggagcccgcaggaccgcgtgctggcg 459
Query: 123 cacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctggagaccatc 182
||| | ||||| || |||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct: 460 cacgcctccacggcgtgcttcctgacgcactgcgggtggaactccacgctcgagacggtc 519
Query: 183 gcggcgggcgtgcccgtggtggccttcccgcagtggggcgaccagtgcacggac 236
|| || || || |||||| |||| ||||| ||||||||||||||||||||||||
Sbjct: 520 gccgccggtgttcccgtgctggctttcccacagtggggcgaccagtgcacggac 573
>gb|CW107876.1|CW107876 104_478_11096833_148_34481_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096833, DNA
sequence
Length = 618
Score = 143 bits (72), Expect = 3e-032
Identities = 195/236 (82%)
Strand = Plus / Minus
Query: 213 cagtggggcgaccagtgcacggacgccaagttcctggtggacgagctcgggatgggtgtc 272
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct: 591 cagtggggcgaccagtgcacggacgccaagttcctggtcgacgagcttaggatgggcgtc 532
Query: 273 cgcctccgcgggccgctgcggcgggacgccgtgcgggaggcggtggacgccgcagtggcg 332
| |||||||| ||| |||||||||| | ||||| ||||| ||||| || ||| | |
Sbjct: 531 cacctccgcgccccgatgcggcgggagggtgtgcgcgaggctgtggatgcagcaacgaca 472
Query: 333 gggcccgaggccgacgcgatgctcgccagcgccaggaggtggagcgcggcggcgcgggag 392
||||| ||||| ||||| |||||||||| ||| | | |||||||||||||||||||
Sbjct: 471 gggccagaggctgacgccatgctcgccaacgctaagtcctggagcgcggcggcgcgggcc 412
Query: 393 gccgtggcgcccggcgggtcctcggacgcgcacgtccaggcgttcgtggacgaggt 448
|| ||| |||| || ||||| |||||| ||| || ||||||||| | ||||||||
Sbjct: 411 gcagtgacgccaggagggtcgtcggaccggcatgttcaggcgttcatcgacgaggt 356
>gb|CW021352.1|CW021352 104_160_10431214_5_30005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431214, DNA
sequence
Length = 445
Score = 113 bits (57), Expect = 3e-023
Identities = 128/149 (85%), Gaps = 2/149 (1%)
Strand = Plus / Minus
Query: 4 cggcccttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctg 62
|||||||||||||||||||| || ||| ||||||| |||||||| ||||| |||||||||
Sbjct: 174 cggcccttcctgtgggtggtgcggccggacacccgcccgctgctcccggaggggttcctg 115
Query: 63 gactccgtggccgggcgcggcgcggtggtgccttggagcccccaggaccgcgtgctggcg 122
||| |||| || || |||||| ||| ||||| |||||||| ||||| ||||||||||||
Sbjct: 114 gacaccgtcgcgggccgcggcatggtcgtgccgtggagcccgcaggagcgcgtgctggcg 55
Query: 123 cacccgtccaccgcctgcttcctcacgca 151
||| | ||||||| || |||||||||||
Sbjct: 54 cacgctgccaccgcgtg-ttcctcacgca 27
>gb|CL174737.1|CL174737 104_379_10891859_148_31768_227 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891859, DNA
sequence
Length = 211
Score = 111 bits (56), Expect = 1e-022
Identities = 105/120 (87%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 10 ttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctggactcc 68
||||||||||||||||| ||| |||||||| || || ||||| |||||||||||| ||
Sbjct: 92 ttcctgtgggtggtccggccggacacccgggagcacctcccggaagggttcctggacgcc 151
Query: 69 gtggccgggcgcggcgcggtggtgccttggagcccccaggaccgcgtgctggcgcacccg 128
||||||||||| ||| |||||||||| |||||||| |||||| | |||||||||||||||
Sbjct: 152 gtggccgggcggggcacggtggtgccgtggagcccgcaggacagggtgctggcgcacccg 211
>gb|CW450865.1|CW450865 fsbb001f189l06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189l06, DNA
sequence
Length = 445
Score = 99.6 bits (50), Expect = 4e-019
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 327 gtggcggggcccgaggccgacgcgatgctcgccagcgccaggaggtggagcgcggcggcg 386
||||||||||| ||||||||||| ||||| |||| |||||| ||||||||||| |||
Sbjct: 439 gtggcggggccagaggccgacgccatgctgtccagtgccaggtcgtggagcgcggtggcc 380
Query: 387 cgggaggccgtggcgcccggcgggtcctcggacgcgcacgtccaggcgttcgtggacgag 446
|||| ||||||||| ||||||||||| |||| | || ||||||||||||||| | ||||
Sbjct: 379 cgggcggccgtggcccccggcgggtcgtcggcccggcccgtccaggcgttcgtcgccgag 320
Query: 447 gt 448
||
Sbjct: 319 gt 318
>gb|CW108847.1|CW108847 104_480_11097740_148_34500_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097740, DNA
sequence
Length = 305
Score = 85.7 bits (43), Expect = 6e-015
Identities = 92/107 (85%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 4 cggcccttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctg 62
|||||||||||||||||||| || ||| ||||||| |||||||| ||||| |||||||||
Sbjct: 109 cggcccttcctgtgggtggtgcggccggacacccgcccgctgctcccggaggggttcctg 50
Query: 63 gactccgtggccgggcgcggcgcggtggtgccttggagcccccagga 109
||| |||| || || |||||| ||| ||||| |||||||| |||||
Sbjct: 49 gacaccgtcgcgggccgcggcatggtcgtgccgtggagcccgcagga 3
>gb|AW923483.1|AW923483 DG1_52_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 457
Score = 85.7 bits (43), Expect = 6e-015
Identities = 83/95 (87%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 10 ttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctggactcc 68
||||||||||||||||| ||| |||||||| || || ||||| |||||||||||| ||
Sbjct: 361 ttcctgtgggtggtccggccggacacccgggagcacctcccggaagggttcctggacgcc 420
Query: 69 gtggccgggcgcggcgcggtggtgccttggagccc 103
||||||||||| ||| |||||||||| ||||||||
Sbjct: 421 gtggccgggcggggcacggtggtgccgtggagccc 455
>gb|CB924624.1|CB924624 ABA1_1_A07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_1_A07_A012 3', mRNA sequence
Length = 608
Score = 79.8 bits (40), Expect = 4e-013
Identities = 80/92 (86%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 10 ttcctgtgggtggtccgcccg-acacccggccgctgctgccggacgggttcctggactcc 68
||||||||||||||||| ||| |||||||| || || ||||| |||||||||||| ||
Sbjct: 97 ttcctgtgggtggtccggccggacacccgggagcacctcccggaagggttcctggacgcc 38
Query: 69 gtggccgggcgcggcgcggtggtgccttggag 100
||||||||||| ||| |||||||||| |||||
Sbjct: 37 gtggccgggcggggcacggtggtgccgtggag 6
>gb|CW277776.1|CW277776 104_752_11406206_148_35418_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406206, DNA
sequence
Length = 403
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct: 301 cgcgtgctgtcgcacccggccgtgggctgcttcgtcacgcactgcgggtggaactccacg 360
Query: 171 ctggaga 177
|||||||
Sbjct: 361 ctggaga 367
>gb|CB926347.1|CB926347 ABA1_8_G03.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_8_G03_A012 3', mRNA sequence
Length = 602
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct: 103 cgcgtgctgtcgcacccggccgtgggctgcttcgtcacgcactgcgggtggaactccacg 162
Query: 171 ctggaga 177
|||||||
Sbjct: 163 ctggaga 169
>gb|CB926950.1|CB926950 ABA1_11_B02.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_11_B02_A012 3', mRNA sequence
Length = 531
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct: 28 cgcgtgctgtcgcacccggccgtgggctgcttcgtcacgcactgcgggtggaactccacg 87
Query: 171 ctggaga 177
|||||||
Sbjct: 88 ctggaga 94
>gb|CD426207.1|CD426207 SA1_19_E09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_19_E09_A002 3', mRNA sequence
Length = 620
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct: 44 cgcgtgctgtcgcacccggccgtgggctgcttcgtcacgcactgcgggtggaactccacg 103
Query: 171 ctggaga 177
|||||||
Sbjct: 104 ctggaga 110
>gb|CF073799.1|CF073799 FE1_12_E11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_12_E11_A002 3', mRNA sequence
Length = 596
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct: 81 cgcgtgctgtcgcacccggccgtgggctgcttcgtcacgcactgcgggtggaactccacg 140
Query: 171 ctggaga 177
|||||||
Sbjct: 141 ctggaga 147
>gb|CN138029.1|CN138029 OX1_61_F11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_F11_A002 3', mRNA sequence
Length = 711
Score = 69.9 bits (35), Expect = 3e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct: 135 cgcgtgctgtcgcacccggccgtgggctgcttcgtcacgcactgcgggtggaactccacg 194
Query: 171 ctggaga 177
|||||||
Sbjct: 195 ctggaga 201
>gb|CB925266.1|CB925266 ABA1_32_F07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_32_F07_A012 3', mRNA sequence
Length = 569
Score = 65.9 bits (33), Expect = 5e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 137 ctgcttcctcacgcactgcgggtggaactccaccctggaga 177
||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 1 ctgcttcgtcacgcactgcgggtggaactccacgctggaga 41
>gb|CW173419.1|CW173419 104_585_11156835_148_36550_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156835, DNA
sequence
Length = 683
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccat 181
|||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 558 tgctacctcacgcactgcgggtggaactccacgctggaggccat 515
>gb|CW296771.1|CW296771 104_778_11461693_116_35628_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461693, DNA
sequence
Length = 643
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccat 181
|||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 571 tgctacctcacgcactgcgggtggaactccacgctggaggccat 614
>gb|CW296772.1|CW296772 104_778_11461693_148_35632_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461693, DNA
sequence
Length = 651
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccat 181
|||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 167 tgctacctcacgcactgcgggtggaactccacgctggaggccat 124
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
Length = 142376
Score = 61.9 bits (31), Expect = 8e-008
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 112 gcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactc 166
||||||||||||||||| | |||||||||||| ||||||||||| ||||||||
Sbjct: 123411 gcgtgctggcgcacccggcggtcgcctgcttcctgacgcactgcggctggaactc 123465
Score = 44.1 bits (22), Expect = 0.020
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctgga 175
|||||| | |||||||||||||||||||| ||| ||||
Sbjct: 128073 tgcttcgtgacgcactgcgggtggaactcgaccatgga 128110
Score = 42.1 bits (21), Expect = 0.078
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 148 cgcactgcgggtggaactccaccctggag 176
||||||||||||||||||| ||| |||||
Sbjct: 114135 cgcactgcgggtggaactcgaccatggag 114163
>gb|CL175246.1|CL175246 104_380_10892299_116_31767_283 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892299, DNA
sequence
Length = 272
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
|||||||| |||||| ||||||||||||| || |||||| ||||| || ||||||||||
Sbjct: 50 tgcttcctgacgcacagcgggtggaactcgacgctggagggcatcgtggagggcgtgccc 109
Query: 198 gtggtg 203
|||||
Sbjct: 110 atggtg 115
>gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202620, DNA
sequence
Length = 676
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
|||||||| |||||| ||||||||||||| || |||||| ||||| || ||||||||||
Sbjct: 406 tgcttcctgacgcacagcgggtggaactcgacgctggagggcatcgtggagggcgtgccc 347
Query: 198 gtggtg 203
|||||
Sbjct: 346 atggtg 341
>gb|CB927938.1|CB927938 ABA1_35_B08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_35_B08_A012 3', mRNA sequence
Length = 629
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
|||||||| |||||| ||||||||||||| || |||||| ||||| || ||||||||||
Sbjct: 259 tgcttcctgacgcacagcgggtggaactcgacgctggagggcatcgtggagggcgtgccc 318
Query: 198 gtggtg 203
|||||
Sbjct: 319 atggtg 324
>gb|CN133765.1|CN133765 OX1_18_E06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_18_E06_A002 3', mRNA sequence
Length = 574
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
|||||||| |||||| ||||||||||||| || |||||| ||||| || ||||||||||
Sbjct: 126 tgcttcctgacgcacagcgggtggaactcgacgctggagggcatcgtggagggcgtgccc 185
Query: 198 gtggtg 203
|||||
Sbjct: 186 atggtg 191
>gb|BZ340250.1|BZ340250 ic37f08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic37f08 5', DNA sequence
Length = 602
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
|||||||| ||||||||||| |||||||||||| |||| | | | | |||||||||||
Sbjct: 403 tgcttcctgacgcactgcggctggaactccaccgcggaggcgctggtgacgggcgtgccc 344
Query: 198 gtggtggccttcccgcagtgg 218
|||||||| | |||||||||
Sbjct: 343 atggtggccgtgccgcagtgg 323
>gb|CW179115.1|CW179115 104_593_11159929_148_36629_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159929, DNA
sequence
Length = 681
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 117 ctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctggag 176
|||| ||||||| || |||| |||| || ||||||||||||||| ||| || ||||||
Sbjct: 654 ctggagcacccggccgtcgccggctttctgacgcactgcgggtggggctcgacgctggag 595
Query: 177 accatcgcggcgggcgtgccc 197
| | |||||||||||||||||
Sbjct: 594 agcgtcgcggcgggcgtgccc 574
>gb|CW367740.1|CW367740 fsbb001f041f15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f041f15, DNA
sequence
Length = 521
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 117 ctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctggag 176
|||| ||||||| || |||| |||| || ||||||||||||||| ||| || ||||||
Sbjct: 224 ctggagcacccggccgtcgccggctttctgacgcactgcgggtggggctcgacgctggag 165
Query: 177 accatcgcggcgggcgtgccc 197
| | |||||||||||||||||
Sbjct: 164 agcgtcgcggcgggcgtgccc 144
>gb|BE599295.1|BE599295 PI1_87_G04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 614
Score = 58.0 bits (29), Expect = 1e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
|||||||| ||||||||||| |||||||||||| |||| | | | | |||||||||||
Sbjct: 141 tgcttcctgacgcactgcggctggaactccaccgcggaggcgctggtgacgggcgtgccc 200
Query: 198 gtggtggccttcccgcagtgg 218
|||||||| | |||||||||
Sbjct: 201 atggtggccgtgccgcagtgg 221
>gb|CL193419.1|CL193419 104_417_10940920_116_32282_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940920, DNA
sequence
Length = 692
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 145 tcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
|||| ||||||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 159 tcacccactgcgggtggaactcgacgctggaggccatcgcagcgggggtgcc 108
>gb|CW405793.1|CW405793 fsbb001f098i04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098i04, DNA
sequence
Length = 704
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 145 tcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
|||| ||||||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 312 tcacccactgcgggtggaactcgacgctggaggccatcgcagcgggggtgcc 261
>gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219n18, DNA
sequence
Length = 577
Score = 56.0 bits (28), Expect = 5e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 141 ttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
||||||||||||| |||||||||||| ||||| |||| |||| | ||||| |||||
Sbjct: 254 ttcctcacgcactccgggtggaactcgaccctagagagcatctccgcgggggtgcc 199
>gb|BE356265.1|BE356265 DG1_123_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 145 tcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
|||| ||||||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 266 tcacccactgcgggtggaactcgacgctggaggccatcgcagcgggggtgcc 317
>gb|CB925748.1|CB925748 ABA1_23_C10.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_23_C10_A012 3', mRNA sequence
Length = 641
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 145 tcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
|||| ||||||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 261 tcacccactgcgggtggaactcgacgctggaggccatcgcagcgggggtgcc 312
>gb|CB927803.1|CB927803 ABA1_34_B03.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_34_B03_A012 3', mRNA sequence
Length = 591
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 145 tcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
|||| ||||||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 210 tcacccactgcgggtggaactcgacgctggaggccatcgcagcgggggtgcc 261
>gb|CF428156.1|CF428156 PH1_13_G05.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_13_G05_A002 3', mRNA sequence
Length = 538
Score = 56.0 bits (28), Expect = 5e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 141 ttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
||||||||||||| |||||||||||| ||||| |||| |||| | ||||| |||||
Sbjct: 78 ttcctcacgcactccgggtggaactcgaccctagagagcatctccgcgggggtgcc 133
>gb|CN138113.1|CN138113 OX1_61_F11.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_F11_A002 5', mRNA sequence
Length = 877
Score = 56.0 bits (28), Expect = 5e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactc 166
||||||||| |||||||| || | ||||||| ||||||||||||||||||||||
Sbjct: 822 cgcgtgctgtcgcacccggccgtgggctgcttcgtcacgcactgcgggtggaactc 877
>gb|CW214421.1|CW214421 104_646_11194008_148_37053_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194008, DNA
sequence
Length = 705
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 147 acgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcccgtggtggc 205
|||||||||||||||||||| ||| ||||| ||||| |||| || |||| ||||||||
Sbjct: 184 acgcactgcgggtggaactcgaccatggaggccatcacggccgggctgccggtggtggc 242
>gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230904, DNA
sequence
Length = 637
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 139 gcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
|||||||||| |||||||| |||||||||| |||||||| | | |||||||||||||
Sbjct: 452 gcttcctcacccactgcggctggaactccatcctggagagcgtgtgggcgggcgtgccc 510
>gb|CL147747.1|CL147747 104_327_10592607_116_31781_115 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592607, DNA
sequence
Length = 654
Score = 52.0 bits (26), Expect = 8e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 147 acgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
|||||||||||||||||||| || |||||| | || |||||||||||||
Sbjct: 606 acgcactgcgggtggaactcgacgctggaggcggtcacggcgggcgtgcc 557
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 281,321
Number of Sequences: 832831
Number of extensions: 281321
Number of successful extensions: 86718
Number of sequences better than 0.5: 246
Number of HSP's better than 0.5 without gapping: 244
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 86224
Number of HSP's gapped (non-prelim): 476
length of query: 804
length of database: 491,359,669
effective HSP length: 20
effective length of query: 784
effective length of database: 474,703,049
effective search space: 372167190416
effective search space used: 372167190416
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)