BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716365.2.1
(936 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW353450.1|CW353450 fsbb001f016d09f0 Sorghum methylation... 147 2e-033
gb|CW365890.1|CW365890 fsbb001f038k04f0 Sorghum methylation... 113 3e-023
gb|CW365891.1|CW365891 fsbb001f038k04k0 Sorghum methylation... 113 3e-023
gb|CF489387.1|CF489387 POL1_57_F11.b1_A002 Pollen Sorghum b... 113 3e-023
gb|CN134750.1|CN134750 OX1_28_E12.b1_A002 Oxidatively-stres... 101 1e-019
gb|AW565318.1|AW565318 LG1_342_A06.g1_A002 Light Grown 1 (L... 96 7e-018
gb|BE597334.1|BE597334 PI1_72_B09.g1_A002 Pathogen induced ... 96 7e-018
gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorgh... 94 3e-017
gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation... 94 3e-017
gb|CN147606.1|CN147606 WOUND1_50_F12.g1_A002 Wounded leaves... 94 3e-017
gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves... 94 3e-017
gb|CX606300.1|CX606300 ANR1_2_F08.b1_A002 Anaerobic roots S... 90 4e-016
gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves... 86 7e-015
gb|CF489555.1|CF489555 POL1_58_F10.b1_A002 Pollen Sorghum b... 84 3e-014
gb|BF705043.1|BF705043 RHIZ2_1_F10.g1_A003 Rhizome2 (RHIZ2)... 72 1e-010
gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Me... 68 2e-009
gb|BG103243.1|BG103243 RHIZ2_19_H12.g1_A003 Rhizome2 (RHIZ2... 56 6e-006
gb|CX613644.1|CX613644 GABR1_9_H06.b1_A002 GA- or brassinol... 56 6e-006
gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seed... 52 9e-005
gb|CW183962.1|CW183962 104_600_11164896_148_36687_096 Sorgh... 48 0.001
gb|AW679681.1|AW679681 WS1_30_E12.g1_A002 Water-stressed 1 ... 48 0.001
gb|AW923900.1|AW923900 WS1_30_E12.b1_A002 Water-stressed 1 ... 48 0.001
gb|BE594970.1|BE594970 PI1_48_B08.g1_A002 Pathogen induced ... 48 0.001
gb|BG357481.1|BG357481 OV2_30_D12.g1_A002 Ovary 2 (OV2) Sor... 48 0.001
gb|CD423436.1|CD423436 SA1_23_C04.b1_A002 Salicylic acid-tr... 48 0.001
gb|CF074385.1|CF074385 FE1_24_H07.b1_A002 Iron-deficient se... 48 0.001
gb|CF485574.1|CF485574 POL1_32_G12.b1_A002 Pollen Sorghum b... 48 0.001
gb|CN126293.1|CN126293 RHOH1_16_G04.b1_A002 Acid- and alkal... 48 0.001
gb|CN126382.1|CN126382 RHOH1_16_G04.g1_A002 Acid- and alkal... 48 0.001
gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation... 44 0.023
gb|CW223650.1|CW223650 104_659_11203029_116_37185_085 Sorgh... 40 0.36
gb|CW223651.1|CW223651 104_659_11203029_148_37186_085 Sorgh... 40 0.36
gb|BF480784.1|BF480784 FM1_14_H09.g1_A003 Floral-Induced Me... 40 0.36
>gb|CW353450.1|CW353450 fsbb001f016d09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016d09, DNA
sequence
Length = 730
Score = 147 bits (74), Expect = 2e-033
Identities = 263/326 (80%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| || || || ||||| || || || |||||||| |||
Sbjct: 616 gcccagttcacaccctcaaagaaaggatgttgctttatctcggtagcaccacgcttgtac 557
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
| | ||| ||||| || ||||||| ||||||||||| || | ||||| |||| ||
Sbjct: 556 ccaagtcggtgctgcgggtccttgactagcaatccccttatcatgtccctcgcagagaag 497
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
||||| | || || ||||||||||| ||||| || || || |||||||| | ||| |||
Sbjct: 496 ctcacaattggggactctgggaacctcaagggctggcccacaacgttgaagagtgtagcc 437
Query: 567 ctattcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgcca 626
| || || ||||||||||| || |||||||| || | | ||| |||||||||||||||
Sbjct: 436 cggttgcctgaacctttgaacggggtcttgccaaacaacaactcgtacaagaatatgcca 377
Query: 627 aatgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaag 686
|| |||||||| || |||||||||||||| ||||| || ||||| ||||| || ||||||
Sbjct: 376 aaggtccaccaatccacagcacttccatggccctccccttttattatttctggggccaag 317
Query: 687 tactcatgggtgccaacaaaagacat 712
|||||||||||||||||||| |||||
Sbjct: 316 tactcatgggtgccaacaaaggacat 291
>gb|CW365890.1|CW365890 fsbb001f038k04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038k04, DNA
sequence
Length = 678
Score = 113 bits (57), Expect = 3e-023
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 552 ttgaacaatgtcgccctattcccagaacctttgaatggtgtcttgccgaagagaagctca 611
||||||| |||||||| ||||| | |||||||||||||| || || || || ||||||
Sbjct: 333 ttgaacagtgtcgcccggttccccgtgcctttgaatggtgttttcccaaacaggagctca 274
Query: 612 tacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccctttata 671
|| | |||||| ||||| ||||||||||| |||||||| ||||| ||||| || || |||
Sbjct: 273 tataggaatataccaaaggtccaccagtcaacagcactaccatgaccctcacctttgata 214
Query: 672 atttcaggtgccaagtactcatgggtgccaacaaaagacat 712
|| || ||||||||||||||||| || |||||||| |||||
Sbjct: 213 atctcgggtgccaagtactcatgtgtaccaacaaatgacat 173
Score = 56.0 bits (28), Expect = 6e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 384 aatgcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgctta 443
|||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||||
Sbjct: 501 aatgcccagttcacaccctcaaaaaatgggtgctgttttatctcggtggcaccacgctta 442
>gb|CW365891.1|CW365891 fsbb001f038k04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038k04, DNA
sequence
Length = 693
Score = 113 bits (57), Expect = 3e-023
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 552 ttgaacaatgtcgccctattcccagaacctttgaatggtgtcttgccgaagagaagctca 611
||||||| |||||||| ||||| | |||||||||||||| || || || || ||||||
Sbjct: 358 ttgaacagtgtcgcccggttccccgtgcctttgaatggtgttttcccaaacaggagctca 417
Query: 612 tacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccctttata 671
|| | |||||| ||||| ||||||||||| |||||||| ||||| ||||| || || |||
Sbjct: 418 tataggaatataccaaaggtccaccagtcaacagcactaccatgaccctcacctttgata 477
Query: 672 atttcaggtgccaagtactcatgggtgccaacaaaagacat 712
|| || ||||||||||||||||| || |||||||| |||||
Sbjct: 478 atctcgggtgccaagtactcatgtgtaccaacaaatgacat 518
Score = 56.0 bits (28), Expect = 6e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 384 aatgcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgctta 443
|||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||||
Sbjct: 190 aatgcccagttcacaccctcaaaaaatgggtgctgttttatctcggtggcaccacgctta 249
>gb|CF489387.1|CF489387 POL1_57_F11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_F11_A002 3', mRNA sequence
Length = 712
Score = 113 bits (57), Expect = 3e-023
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 552 ttgaacaatgtcgccctattcccagaacctttgaatggtgtcttgccgaagagaagctca 611
||||||| |||||||| ||||| | |||||||||||||| || || || || ||||||
Sbjct: 195 ttgaacagtgtcgcccggttccccgtgcctttgaatggtgttttcccaaacaggagctca 136
Query: 612 tacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccctttata 671
|| | |||||| ||||| ||||||||||| |||||||| ||||| ||||| || || |||
Sbjct: 135 tataggaatataccaaaggtccaccagtcaacagcactaccatgaccctcacctttgata 76
Query: 672 atttcaggtgccaagtactcatgggtgccaacaaaagacat 712
|| || ||||||||||||||||| || |||||||| |||||
Sbjct: 75 atctcgggtgccaagtactcatgtgtaccaacaaatgacat 35
Score = 56.0 bits (28), Expect = 6e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 384 aatgcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgctta 443
|||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||||
Sbjct: 363 aatgcccagttcacaccctcaaaaaatgggtgctgttttatctcggtggcaccacgctta 304
>gb|CN134750.1|CN134750 OX1_28_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_E12_A002 3', mRNA sequence
Length = 842
Score = 101 bits (51), Expect = 1e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 606 agctcatacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccc 665
|||||||| | |||||| ||||| |||||||| || |||||||| ||||| || || |||
Sbjct: 347 agctcataaaggaatataccaaaggtccaccaatccacagcactgccatggccttctccc 288
Query: 666 tttataatttcaggtgccaagtactcatgggtgccaacaaaagacatagaccttgcatct 725
|| || ||||| || |||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 287 ttgattatttctggcgccaagtactcatgggtgccaacaaatgacatagagcgagcatcg 228
Query: 726 gtcggctctgcaacaagctcagg 748
|| ||||| |||| ||||||||
Sbjct: 227 gttggctccgcaatgagctcagg 205
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 566 gcccaattcacaccctcaaagaacgggtgctg 535
>gb|AW565318.1|AW565318 LG1_342_A06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 95.6 bits (48), Expect = 7e-018
Identities = 225/284 (79%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| || || || ||||| || || || |||||||| |||
Sbjct: 286 gcccagttcacaccctcaaagaaaggatgttgctttatctcggtagcaccacgcttgtac 227
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
| | ||| ||||| || ||||||| ||||||||||| || | ||||| |||| ||
Sbjct: 226 ccaagtcggtgctgcgggtccttgactagcaatccccttatcatgtccctcgcagagaag 167
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
||||| | || || ||||||||||| ||||| || || || |||||||| | ||| |||
Sbjct: 166 ctcacaattggggactctgggaacctcaagggctggcccacaacgttgaagagtgtagcc 107
Query: 567 ctattcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgcca 626
| || || ||||||||||| || |||||||| || | | ||| |||||||||||||||
Sbjct: 106 cggttgcctgaacctttgaacggggtcttgccaaacaacaactcgtacaagaatatgcca 47
Query: 627 aatgtccaccagtctacagcacttccatgcccctcgccctttat 670
|| |||||||| || |||||||||||||| ||||| || |||||
Sbjct: 46 aaggtccaccaatccacagcacttccatggccctccccttttat 3
>gb|BE597334.1|BE597334 PI1_72_B09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 614
Score = 95.6 bits (48), Expect = 7e-018
Identities = 225/284 (79%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| || || || ||||| || || || |||||||| |||
Sbjct: 287 gcccagttcacaccctcaaagaaaggatgttgctttatctcggtagcaccacgcttgtac 228
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
| | ||| ||||| || ||||||| ||||||||||| || | ||||| |||| ||
Sbjct: 227 ccaagtcggtgctgcgggtccttgactagcaatccccttatcatgtccctcgcagagaag 168
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
||||| | || || ||||||||||| ||||| || || || |||||||| | ||| |||
Sbjct: 167 ctcacaattggggactctgggaacctcaagggctggcccacaacgttgaagagtgtagcc 108
Query: 567 ctattcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgcca 626
| || || ||||||||||| || |||||||| || | | ||| |||||||||||||||
Sbjct: 107 cggttgcctgaacctttgaacggggtcttgccaaacaacaactcgtacaagaatatgcca 48
Query: 627 aatgtccaccagtctacagcacttccatgcccctcgccctttat 670
|| |||||||| || |||||||||||||| ||||| || |||||
Sbjct: 47 aaggtccaccaatccacagcacttccatggccctccccttttat 4
>gb|CW105163.1|CW105163 104_474_11012772_116_34453_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012772, DNA
sequence
Length = 714
Score = 93.7 bits (47), Expect = 3e-017
Identities = 149/183 (81%)
Strand = Plus / Minus
Query: 569 attcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaa 628
|||||||| ||| |||| ||||||||||| | | ||| ||||| | ||| | ||||||
Sbjct: 285 attcccaggtcctctgaagggtgtcttgccatataaaagttcataaaggaagacgccaaa 226
Query: 629 tgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagta 688
||||||||||| |||||||||||||| || || || || || ||||| ||||| | |||
Sbjct: 225 ggtccaccagtcaacagcacttccatggccatcccctttgatgatttctggtgcaaggta 166
Query: 689 ctcatgggtgccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcagg 748
|||||| ||||||||||| || |||| | |||||| || |||||| ||||||||| |||
Sbjct: 165 ctcatgtgtgccaacaaaggaattagagcgtgcatcagtaggctctacaacaagctgagg 106
Query: 749 aag 751
|||
Sbjct: 105 aag 103
>gb|CW403691.1|CW403691 fsbb001f095i13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 681
Score = 93.7 bits (47), Expect = 3e-017
Identities = 149/183 (81%)
Strand = Plus / Minus
Query: 569 attcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaa 628
|||||||| ||| |||| ||||||||||| | | ||| ||||| | ||| | ||||||
Sbjct: 431 attcccaggtcctctgaagggtgtcttgccatataaaagttcataaaggaagacgccaaa 372
Query: 629 tgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagta 688
||||||||||| |||||||||||||| || || || || || ||||| ||||| | |||
Sbjct: 371 ggtccaccagtcaacagcacttccatggccatcccctttgatgatttctggtgcaaggta 312
Query: 689 ctcatgggtgccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcagg 748
|||||| ||||||||||| || |||| | |||||| || |||||| ||||||||| |||
Sbjct: 311 ctcatgtgtgccaacaaaggaattagagcgtgcatcagtaggctctacaacaagctgagg 252
Query: 749 aag 751
|||
Sbjct: 251 aag 249
>gb|CN147606.1|CN147606 WOUND1_50_F12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_F12_A002 5', mRNA sequence
Length = 818
Score = 93.7 bits (47), Expect = 3e-017
Identities = 149/183 (81%)
Strand = Plus / Minus
Query: 569 attcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaa 628
|||||||| ||| |||| ||||||||||| | | ||| ||||| | ||| | ||||||
Sbjct: 711 attcccaggtcctctgaagggtgtcttgccatataaaagttcataaaggaagacgccaaa 652
Query: 629 tgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagta 688
||||||||||| |||||||||||||| || || || || || ||||| ||||| | |||
Sbjct: 651 ggtccaccagtcaacagcacttccatggccatcccctttgatgatttctggtgcaaggta 592
Query: 689 ctcatgggtgccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcagg 748
|||||| ||||||||||| || |||| | |||||| || |||||| ||||||||| |||
Sbjct: 591 ctcatgtgtgccaacaaaggaattagagcgtgcatcagtaggctctacaacaagctgagg 532
Query: 749 aag 751
|||
Sbjct: 531 aag 529
>gb|CN149831.1|CN149831 WOUND1_65_D05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_65_D05_A002 3', mRNA sequence
Length = 685
Score = 93.7 bits (47), Expect = 3e-017
Identities = 149/183 (81%)
Strand = Plus / Minus
Query: 569 attcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaa 628
|||||||| ||| |||| ||||||||||| | | ||| ||||| | ||| | ||||||
Sbjct: 229 attcccaggtcctctgaagggtgtcttgccatataaaagttcataaaggaagacgccaaa 170
Query: 629 tgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagta 688
||||||||||| |||||||||||||| || || || || || ||||| ||||| | |||
Sbjct: 169 ggtccaccagtcaacagcacttccatggccatcccctttgatgatttctggtgcaaggta 110
Query: 689 ctcatgggtgccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcagg 748
|||||| ||||||||||| || |||| | |||||| || |||||| ||||||||| |||
Sbjct: 109 ctcatgtgtgccaacaaaggaattagagcgtgcatcagtaggctctacaacaagctgagg 50
Query: 749 aag 751
|||
Sbjct: 49 aag 47
>gb|CX606300.1|CX606300 ANR1_2_F08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_F08_A002 3', mRNA sequence
Length = 593
Score = 89.7 bits (45), Expect = 4e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 552 ttgaacaatgtcgccctattcccagaacctttgaatggtgtcttgccgaagagaagctca 611
||||||| |||||||| ||||| | ||||||||||| || || || || || |||||
Sbjct: 195 ttgaacagtgtcgcccggttccccgtgcctttgaatggggttttcccaaacaggagctcc 136
Query: 612 tacaagaatatgccaaatgtccaccagtctacagcacttccatgcccctcgccctttata 671
|| | |||||| ||||| ||||||||||| |||||||| ||||| ||||| || || |||
Sbjct: 135 tataggaatataccaaaggtccaccagtcaacagcactaccatgaccctcacctttgata 76
Query: 672 atttcaggtgccaagtactcatgggtgccaacaaaagacat 712
|| || || |||||||||||||| || |||||||| |||||
Sbjct: 75 atctcgggggccaagtactcatgtgtaccaacaaatgacat 35
>gb|CN147521.1|CN147521 WOUND1_50_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_F12_A002 3', mRNA sequence
Length = 763
Score = 85.7 bits (43), Expect = 7e-015
Identities = 148/183 (80%)
Strand = Plus / Minus
Query: 569 attcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaa 628
|||||||| ||| |||| ||||||||||| | | ||| ||||| | ||| | ||||||
Sbjct: 224 attcccaggtcctctgaagggtgtcttgccatataaaagttcataaaggaagacgccaaa 165
Query: 629 tgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagta 688
||||||| ||| |||||||||||||| || || || || || ||||| ||||| | |||
Sbjct: 164 ggtccaccggtcaacagcacttccatggccatcccctttgatgatttctggtgcaaggta 105
Query: 689 ctcatgggtgccaacaaaagacatagaccttgcatctgtcggctctgcaacaagctcagg 748
|||||| ||||||||||| || |||| | |||||| || |||||| ||||||||| |||
Sbjct: 104 ctcatgtgtgccaacaaaggaattagagcgtgcatcagtaggctctacaacaagctgagg 45
Query: 749 aag 751
|||
Sbjct: 44 aag 42
>gb|CF489555.1|CF489555 POL1_58_F10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_58_F10_A002 3', mRNA sequence
Length = 692
Score = 83.8 bits (42), Expect = 3e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 579 cctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaatgtccaccag 638
|||||||||||||| || || || || |||||||| | |||||| ||||| | ||||||
Sbjct: 147 cctttgaatggtgttttcccaaacaggagctcatataggaatataccaaaggggcaccag 88
Query: 639 tctacagcacttccatgcccctcgccctttataatttcaggtgccaagtactcatgggtg 698
|| ||| |||| ||||| ||||| || || ||||| || ||||||||||||||||| ||
Sbjct: 87 tcaacaacactaccatgaccctcacctttgataatctcgggtgccaagtactcatgtgta 28
Query: 699 ccaacaaaagacat 712
|||||||| |||||
Sbjct: 27 ccaacaaatgacat 14
Score = 56.0 bits (28), Expect = 6e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 384 aatgcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgctta 443
|||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||||
Sbjct: 342 aatgcccagttcacaccctcaaaaaatgggtgctgttttatctcggtggcaccacgctta 283
>gb|BF705043.1|BF705043 RHIZ2_1_F10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 639
Score = 71.9 bits (36), Expect = 1e-010
Identities = 204/260 (78%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| || || || ||||| || || || |||||||| |||
Sbjct: 260 gcccagttcacaccctcaaagaaaggatgttgctttatctcggtagcaccacgcttgtac 201
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
| | ||| ||||| || ||||||| ||||||||||| || | ||||| |||| ||
Sbjct: 200 ccaagtcggtgctgcgggtccttgactagcaatccccttatcatgtccctcgcagagaag 141
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
||||| | || || ||||||||||| ||||| || || || |||||||| | ||| |||
Sbjct: 140 ctcacaattggggactctgggaacctcaagggctggcccacaacgttgaagagtgtagcc 81
Query: 567 ctattcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgcca 626
| || || ||||||||||| || |||||||| || | | ||| |||||||||||||||
Sbjct: 80 cggttgcctgaacctttgaacggggtcttgccaaacaacaactcgtacaagaatatgcca 21
Query: 627 aatgtccaccagtctacagc 646
|| |||||||| || |||||
Sbjct: 20 aaggtccaccaatccacagc 1
>gb|BF422042.1|BF422042 FM1_12_C02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 591
Score = 67.9 bits (34), Expect = 2e-009
Identities = 109/134 (81%)
Strand = Plus / Minus
Query: 569 attcccagaacctttgaatggtgtcttgccgaagagaagctcatacaagaatatgccaaa 628
|||||||| ||| |||| ||||||||||| | | ||| ||||| | ||| | ||||||
Sbjct: 134 attcccaggtcctctgaagggtgtcttgccatataaaagttcataaaggaagacgccaaa 75
Query: 629 tgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggtgccaagta 688
||||||||||| |||||||||||||| || || || || || ||||| ||||| | |||
Sbjct: 74 ggtccaccagtcaacagcacttccatggccatcccctttgatgatttctggtgcaaggta 15
Query: 689 ctcatgggtgccaa 702
|||||| |||||||
Sbjct: 14 ctcatgtgtgccaa 1
>gb|BG103243.1|BG103243 RHIZ2_19_H12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 691
Score = 56.0 bits (28), Expect = 6e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 621 atgccaaatgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggt 680
||||| || ||||||||||| || || ||||||||||| || ||||| || ||||||||
Sbjct: 164 atgccgaaggtccaccagtcgacggcgcttccatgcccttcacccttgatgatttcaggg 105
Query: 681 gccaagtactcatgggtgccaacaaaagacat 712
|| ||||| ||||| || || ||||| |||||
Sbjct: 104 gctaagtattcatgagtcccgacaaatgacat 73
>gb|CX613644.1|CX613644 GABR1_9_H06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_H06_A002 3', mRNA sequence
Length = 508
Score = 56.0 bits (28), Expect = 6e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 384 aatgcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgctta 443
|||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||||
Sbjct: 229 aatgcccagttcacaccctcaaaaaatgggtgctgttttatctcggtggcaccacgctta 170
>gb|CD209113.1|CD209113 HS1_46_A12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_46_A12_A012 3', mRNA sequence
Length = 651
Score = 52.0 bits (26), Expect = 9e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 621 atgccaaatgtccaccagtctacagcacttccatgcccctcgccctttataatttcaggt 680
||||| || ||||||||||| || || ||||||||||| || ||||| || ||||||||
Sbjct: 113 atgccgaaggtccaccagtcgacggcgcttccatgcccttcacccttgatgatttcaggg 54
Query: 681 gccaagtactcatg 694
|| ||||| |||||
Sbjct: 53 gctaagtattcatg 40
>gb|CW183962.1|CW183962 104_600_11164896_148_36687_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164896, DNA
sequence
Length = 665
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 104 gcccaattcacaccctcaaagaacgggtgctg 73
>gb|AW679681.1|AW679681 WS1_30_E12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 637
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 178 gcccaattcacaccctcaaagaacgggtgctg 147
>gb|AW923900.1|AW923900 WS1_30_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 569
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 246 gcccaattcacaccctcaaagaacgggtgctg 215
>gb|BE594970.1|BE594970 PI1_48_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 645
Score = 48.1 bits (24), Expect = 0.001
Identities = 165/212 (77%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| || || || ||||| || || || |||||||| |||
Sbjct: 235 gcccagttcacaccctcaaagaaaggatgttgctttatctcggtagcaccacgcttgtac 176
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
| | ||| ||||| || ||||||| ||||||||||| || | ||||| |||| ||
Sbjct: 175 ccaagtcggtgctgcgggtccttgactagcaatccccttatcatgtccctcgcagagaag 116
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
||||| | || || ||||||||||| ||||| || || || |||||||| | ||| |||
Sbjct: 115 ctcacaattggggactctgggaacctcaagggctggcccacaacgttgaagagtgtagcc 56
Query: 567 ctattcccagaacctttgaatggtgtcttgcc 598
| || || ||||||||||| || ||||||||
Sbjct: 55 cggttgcctgaacctttgaacggggtcttgcc 24
>gb|BG357481.1|BG357481 OV2_30_D12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 658
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 234 gcccaattcacaccctcaaagaacgggtgctg 203
>gb|CD423436.1|CD423436 SA1_23_C04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_23_C04_A002 3', mRNA sequence
Length = 643
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 196 gcccaattcacaccctcaaagaacgggtgctg 165
>gb|CF074385.1|CF074385 FE1_24_H07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_24_H07_A002 3', mRNA sequence
Length = 635
Score = 48.1 bits (24), Expect = 0.001
Identities = 165/212 (77%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| || || || ||||| || || || |||||||| |||
Sbjct: 226 gcccagttcacaccctcaaagaaaggatgttgctttatctcggtagcaccacgcttgtac 167
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
| | ||| ||||| || ||||||| ||||||||||| || | ||||| |||| ||
Sbjct: 166 ccaagtcggtgctgcgggtccttgactagcaatccccttatcatgtccctcgcagagaag 107
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
||||| | || || ||||||||||| ||||| || || || |||||||| | ||| |||
Sbjct: 106 ctcacaattggggactctgggaacctcaagggctggcccacaacgttgaagagtgtagcc 47
Query: 567 ctattcccagaacctttgaatggtgtcttgcc 598
| || || ||||||||||| || ||||||||
Sbjct: 46 cggttgcctgaacctttgaacggggtcttgcc 15
>gb|CF485574.1|CF485574 POL1_32_G12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_G12_A002 3', mRNA sequence
Length = 563
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 204 gcccaattcacaccctcaaagaacgggtgctg 173
>gb|CN126293.1|CN126293 RHOH1_16_G04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G04_A002 3', mRNA sequence
Length = 820
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 365 gcccaattcacaccctcaaagaacgggtgctg 334
>gb|CN126382.1|CN126382 RHOH1_16_G04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G04_A002 5', mRNA sequence
Length = 724
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
|||||||| ||||| |||||||||||||||||
Sbjct: 675 gcccaattcacaccctcaaagaacgggtgctg 644
>gb|CW403690.1|CW403690 fsbb001f095i13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i13, DNA
sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 630 gtccaccagtctacagcacttccatg 655
||||||||||| ||||||||||||||
Sbjct: 567 gtccaccagtcaacagcacttccatg 592
>gb|CW223650.1|CW223650 104_659_11203029_116_37185_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203029, DNA
sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.36
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
||||| || |||||||| ||||||||||||||
Sbjct: 600 gcccagttgacaccttcgaagaacgggtgctg 631
>gb|CW223651.1|CW223651 104_659_11203029_148_37186_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203029, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.36
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctg 418
||||| || |||||||| ||||||||||||||
Sbjct: 344 gcccagttgacaccttcgaagaacgggtgctg 313
>gb|BF480784.1|BF480784 FM1_14_H09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.36
Identities = 155/200 (77%)
Strand = Plus / Minus
Query: 387 gcccaattaacaccttcaaagaacgggtgctgttttatttctgtggctccacgcttatac 446
||||| || ||||| |||||||| || || || ||||| || || || |||||||| |||
Sbjct: 202 gcccagttcacaccctcaaagaaaggatgttgctttatctcggtagcaccacgcttgtac 143
Query: 447 gctaatcgatgctgaggttccttgatgagcaatcccctaataagatcccttgcagcaaaa 506
| | ||| ||||| || ||||||| ||||||||||| || | ||||| |||| ||
Sbjct: 142 ccaagtcggtgctgcgggtccttgactagcaatccccttatcatgtccctcgcagagaag 83
Query: 507 ctcactacaggtgattctgggaaccttaagggttgtccaactacgttgaacaatgtcgcc 566
||||| | || || ||||||||||| ||||| || || || |||||||| | ||| |||
Sbjct: 82 ctcacaattggggactctgggaacctcaagggctggcccacaacgttgaagagtgtagcc 23
Query: 567 ctattcccagaacctttgaa 586
| || || |||||||||||
Sbjct: 22 cggttgcctgaacctttgaa 3
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,257
Number of Sequences: 832831
Number of extensions: 217257
Number of successful extensions: 57348
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57281
Number of HSP's gapped (non-prelim): 55
length of query: 936
length of database: 491,359,669
effective HSP length: 20
effective length of query: 916
effective length of database: 474,703,049
effective search space: 434827992884
effective search space used: 434827992884
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)