BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.1
(724 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN134916.1|CN134916 OX1_29_H04.b1_A002 Oxidatively-stres... 692 0.0
gb|CF760165.1|CF760165 DSAF1_56_C09.b1_A011 Drought-stresse... 640 0.0
gb|CF758077.1|CF758077 DSAF1_27_A03.g1_A011 Drought-stresse... 418 e-115
gb|CF757766.1|CF757766 DSAF1_22_A08.g1_A011 Drought-stresse... 309 2e-082
gb|BZ350862.1|BZ350862 ht61f07.g1 WGS-SbicolorF (JM107 adap... 198 5e-049
gb|BZ340000.1|BZ340000 ic36b03.g1 WGS-SbicolorF (JM107 adap... 50 3e-004
>gb|CN134916.1|CN134916 OX1_29_H04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_29_H04_A002 3', mRNA sequence
Length = 737
Score = 692 bits (349), Expect = 0.0
Identities = 423/450 (94%)
Strand = Plus / Plus
Query: 89 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 148
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15 aggttatgtgggtgacgacgaggctactgcagcaacagttgattcagaaggctggttgaa 74
Query: 149 aaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcggttgaa 208
||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 75 aactggtgacctatgctacttcaatgaggatgggtttctctacattgttgatcggttgaa 134
Query: 209 agagttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaa 268
|||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 135 agagttgataaaatacaagggatatcaggtacctccagccgaactggggcatatcctgaa 194
Query: 269 ttctcatcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggca 328
||||||||||||||||||||| |||||||||||||| || ||||||||||| | ||||||
Sbjct: 195 ttctcatcctgatatcatggatgcagcagttattccgtacccagacgaagatgtcgggca 254
Query: 329 actcccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcat 388
||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 255 actaccaatggcttttatagtgaggaaaccaggctcaaaccttaccaagcaacaagtcat 314
Query: 389 ggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttc 448
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 315 ggatttcgtggctaaacaggtcgcaccgtacaagaaagtccgtcgagtggcctttgtttc 374
Query: 449 tgcaatccccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgt 508
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgcaattcccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgt 434
Query: 509 gtccatgggtacctccaagctttgaagttt 538
|||||||| |||||||||||||||||||||
Sbjct: 435 gtccatggttacctccaagctttgaagttt 464
>gb|CF760165.1|CF760165 DSAF1_56_C09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_56_C09_A011 5', mRNA sequence
Length = 564
Score = 640 bits (323), Expect = 0.0
Identities = 391/416 (93%)
Strand = Plus / Plus
Query: 123 acagtggattcagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatggg 182
||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct: 1 acagttgattcagaaggctggttgaaaactggtgacctatgctacttcaatgaggatggg 60
Query: 183 ttactctacattgttgatcggttgaaagagttgataaagtacaagggatatcaggtacct 242
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 tttctctacattgttgatcggttgaaagagttgataaaatacaagggatatcaggtacct 120
Query: 243 cctgccgaactggagcatatcctgaattctcatcctgatatcatggacgcagcagttatt 302
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 ccagccgaactggagcatatcctgaattctcatcctgatatcatggatgcagcagttatt 180
Query: 303 ccttatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccaggg 362
|| || ||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 ccgtacccagacgaagatgtcgggcaactaccaatggcttttatagtgaggaaaccaggc 240
Query: 363 tcaaaccttaccgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaag 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 tcaaaccttaccaagcaacaagtcatggatttcgtggctaaacaggtcgcaccgtacaag 300
Query: 423 aaagttcgtcgagtggcctttgtttctgcaatccccaaatcgcctgctgggaagatcttg 482
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 301 aaagtccgtcgagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttg 360
Query: 483 cggcgggagcttgtagagcaggccgtgtccatgggtacctccaagctttgaagttt 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 361 cggcgggagcttgtagagcaggccgtgtccatggttacctccaagctttgaagttt 416
>gb|CF758077.1|CF758077 DSAF1_27_A03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_27_A03_A011 3', mRNA sequence
Length = 532
Score = 418 bits (211), Expect = e-115
Identities = 247/259 (95%)
Strand = Plus / Plus
Query: 280 atatcatggacgcagcagttattccttatccagacgaagacgccgggcaactcccaatgg 339
|||||||||| |||||||||||||| || ||||||||||| | ||||||||| |||||||
Sbjct: 1 atatcatggatgcagcagttattccgtacccagacgaagatgtcgggcaactaccaatgg 60
Query: 340 cttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatggatttcgtgg 399
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 61 cttttatagtgaggaaaccaggctcaaaccttaccaagcaacaagtcatggatttcgtgg 120
Query: 400 ctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatcccca 459
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 121 ctaaacaggtcgcaccgtacaagaaagtccgtcgagtggcctttgtttctgcaattccca 180
Query: 460 aatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggta 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 aatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatggtta 240
Query: 520 cctccaagctttgaagttt 538
|||||||||||||||||||
Sbjct: 241 cctccaagctttgaagttt 259
>gb|CF757766.1|CF757766 DSAF1_22_A08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_22_A08_A011 3', mRNA sequence
Length = 461
Score = 309 bits (156), Expect = 2e-082
Identities = 181/188 (96%), Gaps = 1/188 (0%)
Strand = Plus / Plus
Query: 351 aggaaaccagggtcaaaccttaccgagcaacaagtcatggatttcgtggctaaacaggtc 410
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaaaccaggctcaaacct-accaagcaacaagtcatggatttcgtggctaaacaggtc 59
Query: 411 gcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcgcctgct 470
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 60 gcaccgtacaagaaagtccgtcgagtggcctttgtttctgcaattcccaaatcgcctgct 119
Query: 471 gggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctccaagctt 530
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 120 gggaagatcttgcggcgggagcttgtagagcaggccgtgtccatggttacctccaagctt 179
Query: 531 tgaagttt 538
||||||||
Sbjct: 180 tgaagttt 187
>gb|BZ350862.1|BZ350862 ht61f07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht61f07 5', DNA sequence
Length = 714
Score = 198 bits (100), Expect = 5e-049
Identities = 132/145 (91%)
Strand = Plus / Plus
Query: 94 atgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaaaaccg 153
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 1 atgtgggtgacgacgaggctactgcagcaacagttgattcagaaggctggttgaaaactg 60
Query: 154 gtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcggttgaaagagt 213
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 gtgacctatgctacttcaatgaggatgggtttctctacattgttgatcggttgaaagagt 120
Query: 214 tgataaagtacaagggatatcaggt 238
||||||| |||||||||||||||||
Sbjct: 121 tgataaaatacaagggatatcaggt 145
Score = 161 bits (81), Expect = 1e-037
Identities = 96/101 (95%)
Strand = Plus / Plus
Query: 309 ccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaac 368
||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 430 ccagacgaagatgtcgggcaactaccaatggcttttatagtgaggaaaccaggctcaaac 489
Query: 369 cttaccgagcaacaagtcatggatttcgtggctaaacaggt 409
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 490 cttaccaagcaacaagtcatggatttcgtggctaaacaggt 530
Score = 125 bits (63), Expect = 6e-027
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 234 caggtacctcctgccgaactggagcatatcctgaattctcatcctgatatcatggacgca 293
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 244 caggtacctccagccgaactggagcatatcctgaattctcatcctgatatcatggatgca 303
Query: 294 gcagttattcc 304
|||||||||||
Sbjct: 304 gcagttattcc 314
>gb|BZ340000.1|BZ340000 ic36b03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic36b03 5', DNA sequence
Length = 654
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 5 attttagatatttcccttgaatctt 29
|||||||||||||||||||||||||
Sbjct: 56 attttagatatttcccttgaatctt 32
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,406
Number of Sequences: 832831
Number of extensions: 165406
Number of successful extensions: 44911
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44894
Number of HSP's gapped (non-prelim): 13
length of query: 724
length of database: 491,359,669
effective HSP length: 20
effective length of query: 704
effective length of database: 474,703,049
effective search space: 334190946496
effective search space used: 334190946496
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)