BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN126300.1|CN126300 RHOH1_16_G12.b1_A002 Acid- and alkal... 844 0.0
gb|BE593318.1|BE593318 WS1_100_C08.g1_A002 Water-stressed 1... 674 0.0
gb|CF758320.1|CF758320 DSAF1_30_C09.g1_A011 Drought-stresse... 611 e-173
gb|AW747488.1|AW747488 WS1_68_D08.g1_A002 Water-stressed 1 ... 591 e-167
gb|BG051126.1|BG051126 FM1_56_F02.b1_A003 Floral-Induced Me... 571 e-161
gb|BG051449.1|BG051449 FM1_56_F02.g1_A003 Floral-Induced Me... 539 e-151
gb|CN126390.1|CN126390 RHOH1_16_G12.g1_A002 Acid- and alkal... 486 e-135
gb|CL187978.1|CL187978 104_404_10901272_114_32445_064 Sorgh... 373 e-101
gb|CL187979.1|CL187979 104_404_10901272_116_32449_064 Sorgh... 353 2e-095
gb|CW133689.1|CW133689 104_517_11116897_116_34808_005 Sorgh... 283 2e-074
gb|BG050015.1|BG050015 FM1_65_D01.b1_A003 Floral-Induced Me... 212 5e-053
gb|BE593521.1|BE593521 WS1_100_C08.b1_A002 Water-stressed 1... 192 5e-047
gb|CN144500.1|CN144500 WOUND1_22_F05.g1_A002 Wounded leaves... 131 2e-028
gb|CN151685.1|CN151685 WOUND1_77_A02.b1_A002 Wounded leaves... 129 6e-028
gb|CD213655.1|CD213655 HS1_52_H08.b1_A012 Heat-shocked seed... 117 2e-024
gb|CW080018.1|CW080018 104_406_10902039_116_32473_064 Sorgh... 107 2e-021
gb|CN144436.1|CN144436 WOUND1_22_F05.b1_A002 Wounded leaves... 103 4e-020
gb|AW283663.1|AW283663 LG1_222_A03.g1_A002 Light Grown 1 (L... 94 3e-017
gb|BE356603.1|BE356603 DG1_126_A12.g1_A002 Dark Grown 1 (DG... 86 8e-015
gb|CN139065.1|CN139065 OX1_15_F09.g1_A002 Oxidatively-stres... 86 8e-015
gb|AW671986.1|AW671986 LG1_353_B10.b1_A002 Light Grown 1 (L... 80 5e-013
gb|BG104074.1|BG104074 RHIZ2_40_B12.b1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|CF760790.1|CF760790 DSAF1_66_F10.b1_A011 Drought-stresse... 80 5e-013
gb|BG159117.1|BG159117 RHIZ2_28_B02.b1_A003 Rhizome2 (RHIZ2... 78 2e-012
gb|BG159222.1|BG159222 RHIZ2_27_H08.b1_A003 Rhizome2 (RHIZ2... 78 2e-012
gb|AW286827.2|AW286827 LG1_222_A02.b1_A002 Light Grown 1 (L... 74 3e-011
gb|BG052677.1|BG052677 RHIZ2_28_B02.g1_A003 Rhizome2 (RHIZ2... 74 3e-011
gb|BZ339082.1|BZ339082 ic29f12.g1 WGS-SbicolorF (JM107 adap... 66 8e-009
gb|CL185139.1|CL185139 104_399_10899321_116_32394_047 Sorgh... 66 8e-009
gb|CW209191.1|CW209191 104_639_11189100_116_36988_046 Sorgh... 66 8e-009
gb|CW209192.1|CW209192 104_639_11189100_148_36987_046 Sorgh... 66 8e-009
gb|BG052663.1|BG052663 RHIZ2_27_H08.g1_A003 Rhizome2 (RHIZ2... 66 8e-009
gb|CN138974.1|CN138974 OX1_15_F09.b1_A002 Oxidatively-stres... 66 8e-009
gb|CF480847.1|CF480847 POL1_68_G02.b1_A002 Pollen Sorghum b... 60 5e-007
gb|BG103736.1|BG103736 RHIZ2_40_B12.g1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|CN125521.1|CN125521 RHOH1_11_C10.g1_A002 Acid- and alkal... 58 2e-006
gb|CF480911.1|CF480911 POL1_68_G02.g1_A002 Pollen Sorghum b... 50 5e-004
gb|CL177079.1|CL177079 104_384_10893587_148_31915_035 Sorgh... 42 0.11
gb|CW072101.1|CW072101 104_325_10592075_114_30535 Sorghum m... 42 0.11
gb|CW182718.1|CW182718 104_598_11164228_148_36665_010 Sorgh... 42 0.11
gb|CW262993.1|CW262993 104_730_11230394_116_35227_001 Sorgh... 42 0.11
gb|CW356403.1|CW356403 fsbb001f021h10f0 Sorghum methylation... 42 0.11
gb|CW356404.1|CW356404 fsbb001f021h10k0 Sorghum methylation... 42 0.11
gb|CW359625.1|CW359625 fsbb001f027f13f0 Sorghum methylation... 42 0.11
gb|CW359626.1|CW359626 fsbb001f027f13k0 Sorghum methylation... 42 0.11
gb|CW361169.1|CW361169 fsbb001f029j11f0 Sorghum methylation... 42 0.11
gb|CW361170.1|CW361170 fsbb001f029j11k0 Sorghum methylation... 42 0.11
gb|CW409783.1|CW409783 fsbb001f104d20f0 Sorghum methylation... 42 0.11
gb|CW409784.1|CW409784 fsbb001f104d20k0 Sorghum methylation... 42 0.11
gb|CD213675.1|CD213675 HS1_52_H08.g1_A012 Heat-shocked seed... 42 0.11
gb|CD229430.1|CD229430 CCC1_15_F09.g1_A007 Callus culture/c... 42 0.11
>gb|CN126300.1|CN126300 RHOH1_16_G12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G12_A002 3', mRNA sequence
Length = 725
Score = 844 bits (426), Expect = 0.0
Identities = 622/680 (91%), Gaps = 8/680 (1%)
Strand = Plus / Minus
Query: 75 agagagaaccaaggttacacaacagtaataatatcggaaaacagatacaa-tttcacaat 133
|||||||||| ||||||||||||||| ||| || |||||||||||||| |||||||
Sbjct: 674 agagagaacctaggttacacaacagtgata---tcagaaaacagatacaaatttcacagc 618
Query: 134 agttt-acagcgaggcccaggctcgcgaattcgtacatcaataatacaacagtatttgaa 192
||||| |||||||| |||| ||||||||||||||||||||||| || || |||||||
Sbjct: 617 agttttacagcgagacccaagctcgcgaattcgtacatcaataggcca-caacatttgaa 559
Query: 193 ggccacgatgctctccctaaaacctaggtgacaggggtgcttctggcggaagctacaact 252
||||||| |||||||||||| |||||||||| |||| |||||||| | ||| |||| ||
Sbjct: 558 ggccacggtgctctccctaagacctaggtgaaaggg-tgcttctgctgaaag-tacagct 501
Query: 253 ctgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacgg 312
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 500 ctgtcatgacggcttgtgaagtttgaagccaaaaactcttggagtgtattgctgcaacgg 441
Query: 313 cttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaa 372
|||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 440 cttctgcggcttcaagtgtggataagtcatcaggaaaagatgggggaatgtcgtcccaaa 381
Query: 373 gtatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcattt 432
|||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 380 gtatgatccatcaatgttgccttggtacttggatcttggataattaagttcctcacattt 321
Query: 433 cggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggca 492
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 320 gggacaatatatcttcactgtgctcgatctaggaatatctgattgccctgctggaagaca 261
Query: 493 gggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctc 552
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 260 gggctggccacagcagtacactctggggcatctaccaaagtcatagttcttgaacttctc 201
Query: 553 caacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacag 612
|||||||||||||||||||||||||||||| |||||||| || |||||||| || |||||
Sbjct: 200 caacattgcagctagacccttgctggttaagatgtatcgggcgtgaattaatccatacag 141
Query: 613 catctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattaga 672
|||||||||||| |||||||||||||| ||||||||||| || ||| | ||| |||||||
Sbjct: 140 catctctgcagacgactcgattaattcgttttgctcctcagtgaacacatcaccattaga 81
Query: 673 agactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcag 732
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 80 agactcaatgtctaagatgagatcaagtgcataatcataatatgggacctgattactcag 21
Query: 733 accacacaggttaaaatcat 752
||||||||||||||||||||
Sbjct: 20 accacacaggttaaaatcat 1
>gb|BE593318.1|BE593318 WS1_100_C08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 580
Score = 674 bits (340), Expect = 0.0
Identities = 475/516 (92%), Gaps = 3/516 (0%)
Strand = Plus / Minus
Query: 136 tttacagcgaggcccaggctcgcgaattcgtacatcaataatacaacagtatttgaaggc 195
||||||||||| |||| ||||||||||||||||||||||| || || ||||||||||
Sbjct: 518 tttacagcgagacccaagctcgcgaattcgtacatcaataggcca-caacatttgaaggc 460
Query: 196 cacgatgctctccctaaaacctaggtgacaggggtgcttctggcggaagctacaactctg 255
|||| |||||||||||| |||||||||| |||| |||||||| | ||| |||| |||||
Sbjct: 459 cacggtgctctccctaagacctaggtgaaaggg-tgcttctgctgaaag-tacagctctg 402
Query: 256 tcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggctt 315
||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 401 tcatgacggcttgtgaagtttgaagccaaaaactcttggagtgtattgctgcaacggctt 342
Query: 316 ctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 341 ctgcggcttcaagtgtggataagtcatcaggaaaagatgggggaatgtcgtcccaaagta 282
Query: 376 tgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttcgg 435
||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 281 tgatccatcaatgttgccttggtacttggatcttggataattaagttcctcacatttggg 222
Query: 436 acaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcaggg 495
||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 221 acaatatatcttcactgtgctcgatctaggaatatctgattgccctgctggaagacaggg 162
Query: 496 ctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaa 555
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 161 ctggccacagcagtacactctggggcatctaccaaagtcatagttcttgaacttctccaa 102
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct: 101 cattgcagctagacccttgctggttaagatgtatcgtgcgtgaattaatccatacagcat 42
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||| |||||||||||||| |||||||||||
Sbjct: 41 ctctgcagacgactcgattaattcgttttgctcctc 6
>gb|CF758320.1|CF758320 DSAF1_30_C09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_C09_A011 3', mRNA sequence
Length = 555
Score = 611 bits (308), Expect = e-173
Identities = 465/510 (91%), Gaps = 8/510 (1%)
Strand = Plus / Minus
Query: 75 agagagaaccaaggttacacaacagtaataatatcggaaaacagatacaa-tttcacaat 133
|||||||||| ||||||||||||||| ||| || |||||||||||||| |||||||
Sbjct: 505 agagagaacctaggttacacaacagtgata---tcagaaaacagatacaaatttcacagc 449
Query: 134 agttt-acagcgaggcccaggctcgcgaattcgtacatcaataatacaacagtatttgaa 192
||||| |||||||| |||| ||||||||||||||||||||||| || || |||||||
Sbjct: 448 agttttacagcgagacccaagctcgcgaattcgtacatcaataggcca-caacatttgaa 390
Query: 193 ggccacgatgctctccctaaaacctaggtgacaggggtgcttctggcggaagctacaact 252
||||||| |||||||||||| |||||||||| |||| |||||||| | ||| |||| ||
Sbjct: 389 ggccacggtgctctccctaagacctaggtgaaaggg-tgcttctgctgaaag-tacagct 332
Query: 253 ctgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacgg 312
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 331 ctgtcatgacggcttgtgaagtttgaagccaaaaactcttggagtgtattgctgcaacgg 272
Query: 313 cttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaa 372
|||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 271 cttctgcggcttcaagtgtggataagtcatcaggaaaagatgggggaatgtcgtcccaaa 212
Query: 373 gtatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcattt 432
|||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 211 gtatgatccatcaatgttgccttggtacttggatcttggataattaagttcctcacattt 152
Query: 433 cggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggca 492
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 151 gggacaatatatcttcactgtgctcgatctaggaatatctgattgccctgctggaagaca 92
Query: 493 gggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctc 552
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 91 gggctggccacagcagtacactctggggcatctaccaaagtcatagttcttgaacttctc 32
Query: 553 caacattgcagctagacccttgctggttaa 582
||||||||||||||||||||||||||||||
Sbjct: 31 caacattgcagctagacccttgctggttaa 2
>gb|AW747488.1|AW747488 WS1_68_D08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 591 bits (298), Expect = e-167
Identities = 455/500 (91%), Gaps = 8/500 (1%)
Strand = Plus / Minus
Query: 75 agagagaaccaaggttacacaacagtaataatatcggaaaacagatacaa-tttcacaat 133
|||||||||| ||||||||||||||| ||| || |||||||||||||| |||||||
Sbjct: 494 agagagaacctaggttacacaacagtgata---tcagaaaacagatacaaatttcacagc 438
Query: 134 agttt-acagcgaggcccaggctcgcgaattcgtacatcaataatacaacagtatttgaa 192
||||| |||||||| |||| ||||||||||||||||||||||| || || |||||||
Sbjct: 437 agttttacagcgagacccaagctcgcgaattcgtacatcaataggcca-caacatttgaa 379
Query: 193 ggccacgatgctctccctaaaacctaggtgacaggggtgcttctggcggaagctacaact 252
||||||| |||||||||||| |||||||||| |||| |||||||| | ||| |||| ||
Sbjct: 378 ggccacggtgctctccctaagacctaggtgaaaggg-tgcttctgctgaaag-tacagct 321
Query: 253 ctgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacgg 312
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 320 ctgtcatgacggcttgtgaagtttgaagccaaaaactcttggagtgtattgctgcaacgg 261
Query: 313 cttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaa 372
|||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 260 cttctgcggcttcaagtgtggataagtcatcaggaaaagatgggggaatgtcgtcccaaa 201
Query: 373 gtatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcattt 432
|||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 200 gtatgatccatcaatgttgccttggtacttggatcttggataattaagttcctcacattt 141
Query: 433 cggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggca 492
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 140 gggacaatatatcttcactgtgctcgatctaggaatatctgattgccctgctggaagaca 81
Query: 493 gggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctc 552
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 80 gggctggccacagcagtacactctggggcatctaccaaagtcatagttcttgaacttctc 21
Query: 553 caacattgcagctagaccct 572
||||||||||||||||||||
Sbjct: 20 caacattgcagctagaccct 1
>gb|BG051126.1|BG051126 FM1_56_F02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 482
Score = 571 bits (288), Expect = e-161
Identities = 369/394 (93%), Gaps = 9/394 (2%)
Strand = Plus / Minus
Query: 665 tcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctga 724
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 416 tcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatgggacgtga 357
Query: 725 ttactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaag 784
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 356 ttactcagaccacacaggttaaaatcatcctgtatgtagtcttcatcgatctcacaaaag 297
Query: 785 aattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaa 844
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 296 aattcattgcctcgcaatgtacagaaccatgaaatccaggatgtgtcctccccctcagaa 237
Query: 845 ccactcacatcagaatcttcactgtcagtttcaaattcctcaccatcagaca---cctcc 901
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 236 ccactgacatcagaatcttcgctgtcagtttcaaattcctcaccatcagacatcttctcc 177
Query: 902 gccttgccaagcgacgacggcagcttcccg---gcagcgaggcgctccctctccttggac 958
|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |
Sbjct: 176 gccttgccaagcgacgctggcagcttcccggcagcagctaggcgctccctctccttgggc 117
Query: 959 acga---cgcccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtcc 1015
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 116 acgacgccgcccctggaggtggacggcgacgacctctccaggtgcttctcgagggcgtcc 57
Query: 1016 ttgatgcgcttccggtccatccctgcgccgccgc 1049
||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgatgcgcttccggtccatccctgcgccgccgc 23
Score = 103 bits (52), Expect = 4e-020
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 551 tccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtac 610
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||
Sbjct: 482 tccaacattgcagctagaccattgctggttaagatgtatcgtgcatgaattaatccatac 423
Query: 611 agcatctc 618
||||||||
Sbjct: 422 agcatctc 415
>gb|BG051449.1|BG051449 FM1_56_F02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 539 bits (272), Expect = e-151
Identities = 441/487 (90%), Gaps = 9/487 (1%)
Strand = Plus / Minus
Query: 75 agagagaaccaaggttacacaacagtaataatatcggaaaacagatacaa-tttcacaat 133
|||||||||| ||||||||||||||| ||| || |||||||||||||| ||||||| |
Sbjct: 482 agagagaacctaggttacacaacagtgatatcat--gaaaacagatacaaatttcacagt 425
Query: 134 -agttt-aca-gcgaggcccaggctcgcgaattcgtacatcaataatacaacagtatttg 190
||||| ||| ||||| |||| ||||||||||||||||||||||| || || |||||
Sbjct: 424 cagttttacatgcgagacccaagctcgcgaattcgtacatcaataggcca-caacatttg 366
Query: 191 aaggccacgatgctctccctaaaacctaggtgacaggggtgcttctggcggaagctacaa 250
||||||||| |||||||||||| |||||||||| |||| |||||||| | ||| ||||
Sbjct: 365 aaggccacggtgctctccctaagacctaggtgaaaggg-tgcttctgctgaaag-tacag 308
Query: 251 ctctgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgac 310
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 307 ctctgtcatgacggcttgtgaagtttgaagccaaaaactcttggagtgtattgctgcaac 248
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 247 ggcttctgcggcttcaagtgcggataagtcatcaggaaaagatgggggaatgtcgtccca 188
Query: 371 aagtatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcat 430
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 187 aagtatgatccatcaatgttgccttggtacttggatcttggataattaagttcctcacat 128
Query: 431 ttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaagg 490
|| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct: 127 ttgggacaatatatcttcactgtgctcgatctacgaatatctgattgccctgctggaaga 68
Query: 491 cagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttc 550
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 67 cagggctggccacagcagtacactctggggcatctaccaaagtcatagttcttgaacttc 8
Query: 551 tccaaca 557
|||||||
Sbjct: 7 tccaaca 1
>gb|CN126390.1|CN126390 RHOH1_16_G12.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_16_G12_A002 5', mRNA sequence
Length = 608
Score = 486 bits (245), Expect = e-135
Identities = 317/339 (93%), Gaps = 9/339 (2%)
Strand = Plus / Minus
Query: 720 cctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcac 779
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 603 cctgattactcagaccacacaggttaaaatcatcctgtatgtagtcttcatcgatctcac 544
Query: 780 aaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccct 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 543 aaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctccccct 484
Query: 840 cggaaccactcacatcagaatcttcactgtcagtttcaaattcctcaccatcagaca--- 896
| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 483 cagaaccactgacatcagaatcttcgctgtcagtttcaaattcctcaccatcagacatct 424
Query: 897 cctccgccttgccaagcgacgacggcagcttcccg---gcagcgaggcgctccctctcct 953
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 423 tctccgccttgccaagcgacgctggcagcttcccggcagcagctaggcgctccctctcct 364
Query: 954 tggacacga---cgcccctggaggtagacggcgacgacctctccaggtgcttctcgagcg 1010
||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 363 tgggcacgacgccgcccctggaggtggacggcgacgacctctccaggtgcttctcgaggg 304
Query: 1011 cgtccttgatgcgcttccggtccatccctgcgccgccgc 1049
|||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cgtccttgatgcgcttccggtccatccctgcgccgccgc 265
Score = 170 bits (86), Expect = 2e-040
Identities = 107/113 (94%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 1041 cgccgccgcagcagcaccaaacaaccccgatccacgtaagttgccgctggtttctctccc 1100
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 255 cgccgccgcagc--caccaaacaaccccgatccacgtaagctgccgctggtttctctccc 198
Query: 1101 ccgatccttgcgcgacaggttgagttatccgctgccgagagcctcgcagaacg 1153
|||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 197 ccgatctttgcgcgacaggtcgagttatccgctgccgagagcctcgcaaaacg 145
>gb|CL187978.1|CL187978 104_404_10901272_114_32445_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901272, DNA
sequence
Length = 758
Score = 373 bits (188), Expect = e-101
Identities = 212/220 (96%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatgggacctgat 321
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 320 tactcagaccacacaggttaaaatcatcctgtatgtagtcttcatcgatctcacaaaaga 261
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 260 attcattgcctcgcaatgtacagaaccatgaaatccaggatgtgtcctccccctcagaac 201
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattcctc 885
|||| |||||||||||||| ||||||||||||||||||||
Sbjct: 200 cactgacatcagaatcttcgctgtcagtttcaaattcctc 161
Score = 143 bits (72), Expect = 4e-032
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct: 699 cattgcagctagacccttgctggttaagatgtatcgtgcgtgaattaatccatacagcat 640
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||| |||||||||||||| |||||||||||
Sbjct: 639 ctctgcagacgactcgattaattcgttttgctcctc 604
>gb|CL187979.1|CL187979 104_404_10901272_116_32449_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901272, DNA
sequence
Length = 705
Score = 353 bits (178), Expect = 2e-095
Identities = 202/210 (96%)
Strand = Plus / Plus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 496 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatgggacctgat 555
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 556 tactcagaccacacaggttaaaatcatcctgtatgtagtcttcatcgatctcacaaaaga 615
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 616 attcattgcctcgcaatgtacagaaccatgaaatccaggatgtgtcctccccctcagaac 675
Query: 846 cactcacatcagaatcttcactgtcagttt 875
|||| |||||||||||||| ||||||||||
Sbjct: 676 cactgacatcagaatcttcgctgtcagttt 705
Score = 143 bits (72), Expect = 4e-032
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct: 177 cattgcagctagacccttgctggttaagatgtatcgtgcgtgaattaatccatacagcat 236
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||| |||||||||||||| |||||||||||
Sbjct: 237 ctctgcagacgactcgattaattcgttttgctcctc 272
Score = 133 bits (67), Expect = 4e-029
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 478 ccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgta 537
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1 ccctgctggaagacagggctggccacagcagtacactctggggcatctaccaaagtcata 60
Query: 538 gttcttgaacttctccaac 556
|||||||||||||||||||
Sbjct: 61 gttcttgaacttctccaac 79
>gb|CW133689.1|CW133689 104_517_11116897_116_34808_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116897, DNA
sequence
Length = 677
Score = 283 bits (143), Expect = 2e-074
Identities = 279/317 (88%), Gaps = 8/317 (2%)
Strand = Plus / Minus
Query: 75 agagagaaccaaggttacacaacagtaataatatcggaaaacagatacaa-tttcacaat 133
|||||||||| ||||||||||||||| ||| || |||||||||||||| |||||||
Sbjct: 646 agagagaacctaggttacacaacagtgata---tcagaaaacagatacaaatttcacagc 590
Query: 134 agttt-acagcgaggcccaggctcgcgaattcgtacatcaataatacaacagtatttgaa 192
||||| |||||||| |||| ||||||||||||||||||||||| || || |||||||
Sbjct: 589 agttttacagcgagacccaagctcgcgaattcgtacatcaataggcca-caacatttgaa 531
Query: 193 ggccacgatgctctccctaaaacctaggtgacaggggtgcttctggcggaagctacaact 252
||||||| |||||||| ||| || ||||||| |||| |||||||| | ||| |||| ||
Sbjct: 530 ggccacggtgctctccgtaagacataggtgaaaggg-tgcttctgctgaaag-tacagct 473
Query: 253 ctgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacgg 312
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 472 ctgtcatgacggcttgtgaagtttgaagccaaaaactcttggagtgtattgctgcaacgg 413
Query: 313 cttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaa 372
|||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 412 cttctgcggcttcaagtgtggataagtcatcaggaaaagatgggggaatgtcgtcccaaa 353
Query: 373 gtatgatccatcgatgt 389
|||||||||||| ||||
Sbjct: 352 gtatgatccatcaatgt 336
Score = 50.1 bits (25), Expect = 5e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggata 414
|||||||||||||||||||||||||
Sbjct: 27 tgccttggtacttggatcttggata 3
>gb|BG050015.1|BG050015 FM1_65_D01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 426
Score = 212 bits (107), Expect = 5e-053
Identities = 161/177 (90%), Gaps = 9/177 (5%)
Strand = Plus / Minus
Query: 882 cctcaccatcagacacct---ccgccttgccaagcgacgacggcagcttcccggcagcg- 937
||||||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 426 cctcaccatcagacatcttctccgccttgccaagcgacgctggcagcttcccggcagcag 367
Query: 938 --aggcgctccctctccttggacacgacgcc---cctggaggtagacggcgacgacctct 992
||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 366 ctaggcgctccctctccttgggcacgacgccgcccctggaggtggacggcgacgacctct 307
Query: 993 ccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgccgc 1049
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccaggtgcttctcgagggcgtccttgatgcgcttccggtccatccctgcgccgccgc 250
Score = 178 bits (90), Expect = 7e-043
Identities = 108/113 (95%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 1041 cgccgccgcagcagcaccaaacaaccccgatccacgtaagttgccgctggtttctctccc 1100
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 240 cgccgccgcagc--caccaaacaaccccgatccacgtaagctgccgctggtttctctccc 183
Query: 1101 ccgatccttgcgcgacaggttgagttatccgctgccgagagcctcgcagaacg 1153
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 182 ccgatctttgcgcgacaggtcgagttatccgctgccgagagcctcgcagaacg 130
>gb|BE593521.1|BE593521 WS1_100_C08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 428
Score = 192 bits (97), Expect = 5e-047
Identities = 137/149 (91%), Gaps = 6/149 (4%)
Strand = Plus / Minus
Query: 907 gccaagcgacgacggcagcttcccggcagcg---aggcgctccctctccttggacacgac 963
||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 428 gccaagcgacgctggcagcttcccggcagcagctaggcgctccctctccttgggcacgac 369
Query: 964 gcc---cctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgat 1020
||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 368 gccgcccctggaggtggacggcgacgacctctccaggtgcttctcgagggcgtccttgat 309
Query: 1021 gcgcttccggtccatccctgcgccgccgc 1049
|||||||||||||||||||||||||||||
Sbjct: 308 gcgcttccggtccatccctgcgccgccgc 280
Score = 168 bits (85), Expect = 7e-040
Identities = 106/112 (94%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 1042 gccgccgcagcagcaccaaacaaccccgatccacgtaagttgccgctggtttctctcccc 1101
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 269 gccgccgcagc--caccaaacaaccccgatccacgtaagctgccgctggtttctctcccc 212
Query: 1102 cgatccttgcgcgacaggttgagttatccgctgccgagagcctcgcagaacg 1153
||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 211 cgatctttgcgcgacaggtcgagttatccgctgccgagagcctcgcaaaacg 160
>gb|CN144500.1|CN144500 WOUND1_22_F05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_F05_A002 5', mRNA sequence
Length = 246
Score = 131 bits (66), Expect = 2e-028
Identities = 81/86 (94%)
Strand = Plus / Minus
Query: 1057 ccaaacaaccccgatccacgtaagttgccgctggtttctctcccccgatccttgcgcgac 1116
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct: 246 ccaaacaaccccgatccacgtaagctgccgctggtttctctcccccgatctttgcgtgac 187
Query: 1117 aggttgagttatccgctgccgagagc 1142
|||| |||||||| ||||||||||||
Sbjct: 186 aggtcgagttatctgctgccgagagc 161
>gb|CN151685.1|CN151685 WOUND1_77_A02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_77_A02_A002 3', mRNA sequence
Length = 728
Score = 129 bits (65), Expect = 6e-028
Identities = 251/313 (80%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||| ||||| | |||| ||| ||||||||||| ||||||||||| || ||||||
Sbjct: 322 ggcttctgtggcttgaggtgctcgtatgtcatcaggaacagatgagggaacgttgtccca 263
Query: 371 aagtatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcat 430
||||||| || ||||||||||||||||||||||| | ||| |||| | ||||| ||
Sbjct: 262 aagtatgcgccgtcgatgttgccttggtacttggaccgtgggtagtagatgtcttcacac 203
Query: 431 ttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaagg 490
|| || || ||||||||||| || || |||| | | | ||||||||| || |||| |||
Sbjct: 202 ttggggcagtatatcttcacggtactagatcgatggatatctgattgtccaactggcagg 143
Query: 491 cagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttc 550
|| || || || |||||||| || | ||||| | |||||||| |||||||| |||||
Sbjct: 142 catggttgaccgcagcagtaaacacgtgggcaccgcccaaagtcatagttcttatacttc 83
Query: 551 tccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtac 610
|||| ||||||||| || || || ||||| | ||||||||||||||| || | || ||
Sbjct: 82 tccagcattgcagccagtcctttactggtaagaatgtatcgtgcatggatcagcccataa 23
Query: 611 agcatctctgcag 623
|||||||||||||
Sbjct: 22 agcatctctgcag 10
>gb|CD213655.1|CD213655 HS1_52_H08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_H08_A012 3', mRNA sequence
Length = 695
Score = 117 bits (59), Expect = 2e-024
Identities = 251/314 (79%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||| ||||| | |||| ||| ||||||||||| ||||||||||| || ||||||
Sbjct: 342 ggcttctgtggcttgaggtgctcgtatgtcatcaggaacagatgagggaacgttgtccca 283
Query: 371 aagtatgatccatcgatgttgccttggtacttggatc-ttggatagttaagttcttcgca 429
||||||| || ||||||||||||||||||||||| | | || |||| | ||||| ||
Sbjct: 282 aagtatgcgccgtcgatgttgccttggtacttggaccgtngggtagtagatgtcttcaca 223
Query: 430 tttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaag 489
|| || || ||||||||||| || || |||| | | | ||||||||| || |||| ||
Sbjct: 222 cttggggcagtatatcttcacggtactagatcgatggatatctgattgtccaactggcag 163
Query: 490 gcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaactt 549
||| || || || |||||||| || | ||||| | |||||||| |||||||| ||||
Sbjct: 162 gcatggttgaccgcagcagtaaacacgtgggcaccgcccaaagtcatagttcttatactt 103
Query: 550 ctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgta 609
||||| ||||||||| || || || ||||| | ||||||||||||||| || | || ||
Sbjct: 102 ctccagcattgcagccagtcctttactggtaagaatgtatcgtgcatggatcagcccata 43
Query: 610 cagcatctctgcag 623
|||||||||||||
Sbjct: 42 aagcatctctgcag 29
>gb|CW080018.1|CW080018 104_406_10902039_116_32473_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902039, DNA
sequence
Length = 74
Score = 107 bits (54), Expect = 2e-021
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 479 cctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtag 538
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 1 cctgctggaagacagggctggccacagcagtacactctggggcatctgccaaagtcatag 60
Query: 539 ttcttgaacttctc 552
||||||| ||||||
Sbjct: 61 ttcttgatcttctc 74
>gb|CN144436.1|CN144436 WOUND1_22_F05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_F05_A002 3', mRNA sequence
Length = 124
Score = 103 bits (52), Expect = 4e-020
Identities = 99/112 (88%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 186 atttgaaggccacgatgctctccctaaaacctaggtgacaggggtgcttctggcggaagc 245
|||||||||||||| |||||||||||| |||||||||| |||| |||||| | | |||
Sbjct: 110 atttgaaggccacggtgctctccctaagacctaggtgaaaggg-tgcttcagctgaaag- 53
Query: 246 tacaactctgtcatgacggcttgtgaagtttgaagccgaaaacccttggagt 297
|||| |||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct: 52 tacagctctgtcatgacggcttgggaagtttgaagccaaaaactcttggagt 1
>gb|AW283663.1|AW283663 LG1_222_A03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 93.7 bits (47), Expect = 3e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||| ||||| | |||| ||| ||||||||||| ||||||||||| || ||||||
Sbjct: 168 ggcttctgtggcttgaggtgctcgtatgtcatcaggaacagatgagggaacgttgtccca 109
Query: 371 aagtatgatccatcgatgttgccttggtacttgga 405
||||||| || |||||||||||||||||||||||
Sbjct: 108 aagtatgcgccgtcgatgttgccttggtacttgga 74
>gb|BE356603.1|BE356603 DG1_126_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 85.7 bits (43), Expect = 8e-015
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||| ||||| | |||| ||| ||||||||||| ||||||||||| || ||||||
Sbjct: 169 ggcttctgtggcttgaggtgctcgtatgtcatcaggaacagatgagggaacgttgtccca 110
Query: 371 aagtatgatccatcgatgttgccttggtacttgga 405
||||||| || ||||||| |||||||||||||||
Sbjct: 109 aagtatgcgccgtcgatgtagccttggtacttgga 75
>gb|CN139065.1|CN139065 OX1_15_F09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F09_A002 5', mRNA sequence
Length = 766
Score = 85.7 bits (43), Expect = 8e-015
Identities = 223/283 (78%)
Strand = Plus / Minus
Query: 594 catgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcgg 653
||||||| || || || |||||||| |||| ||| || || | |||||||||||| || |
Sbjct: 696 catgaatcaatccatagagcatctcagcagctgattcaatgagttcattttgctcttctg 637
Query: 654 taaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataat 713
| ||| ||| ||| ||||| |||| ||||| || |||||||| ||||| || ||||
Sbjct: 636 tgaacatatcaccatgggaagattcaacatctaatatcagatcaagcgcatagtcgtaat 577
Query: 714 atggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcga 773
|||| || || || || || ||||||||||| |||||||| ||||| || || ||||| |
Sbjct: 576 atggaacttggttgcttagcccacacaggttgaaatcatcttgtatgtactcgtcatcaa 517
Query: 774 tctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcct 833
|||||| || || ||||| || | || ||||||||||||||||||| || || || |
Sbjct: 516 cctcacagaaaaactcattaccccttaaactacagaaccatgaaatccacgaagtatctt 457
Query: 834 ctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
| || || |||||||||||||| || ||||| ||||| |||||
Sbjct: 456 ccccatcagaaccactcacatctgattcttcgctgtcggtttc 414
>gb|AW671986.1|AW671986 LG1_353_B10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 79.8 bits (40), Expect = 5e-013
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
|||||||| |||||||| ||||||||| ||||||||| || || || ||||| | ||||
Sbjct: 532 ccaaagtcatagttcttatacttctccagcattgcagccagtcctttactggtaagaatg 473
Query: 587 tatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgc 646
||||||||||| || | || || ||||||||||||| ||| || | | ||||| ||
Sbjct: 472 tatcgtgcatggatcagcccataaagcatctctgcagctgattctacaagctcattctgt 413
Query: 647 tcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataa 706
|||||||| ||| ||| ||| ||| ||||| || ||||| |||||||| || ||||||
Sbjct: 412 tcctcggtgaacatatcaccatgagatgactcgatatctaaaatgagatcgagagcataa 353
Query: 707 tcataata 714
||||||||
Sbjct: 352 tcataata 345
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
|||| |||||||| || |||||||| |||| |||||||||||||
Sbjct: 54 tctcgaggtgcttgtctagcgcgtcgctgatccgcttccggtcca 10
>gb|BG104074.1|BG104074 RHIZ2_40_B12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 435
Score = 79.8 bits (40), Expect = 5e-013
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
|||||||| |||||||| ||||||||| ||||||||| || || || ||||| | ||||
Sbjct: 405 ccaaagtcatagttcttatacttctccagcattgcagccagtcctttactggtaagaatg 346
Query: 587 tatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgc 646
||||||||||| || | || || ||||||||||||| ||| || | | ||||| ||
Sbjct: 345 tatcgtgcatggatcagcccataaagcatctctgcagctgattctacaagctcattctgt 286
Query: 647 tcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataa 706
|||||||| ||| ||| ||| ||| ||||| || ||||| |||||||| || ||||||
Sbjct: 285 tcctcggtgaacatatcaccatgagatgactcgatatctaaaatgagatcgagagcataa 226
Query: 707 tcataata 714
||||||||
Sbjct: 225 tcataata 218
>gb|CF760790.1|CF760790 DSAF1_66_F10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_F10_A011 5', mRNA sequence
Length = 502
Score = 79.8 bits (40), Expect = 5e-013
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
|||||||| |||||||| ||||||||| ||||||||| || || || ||||| | ||||
Sbjct: 433 ccaaagtcatagttcttatacttctccagcattgcagccagtcctttactggtaagaatg 374
Query: 587 tatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgc 646
||||||||||| || | || || ||||||||||||| ||| || | | ||||| ||
Sbjct: 373 tatcgtgcatggatcagcccataaagcatctctgcagctgattctacaagctcattctgt 314
Query: 647 tcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataa 706
|||||||| ||| ||| ||| ||| ||||| || ||||| |||||||| || ||||||
Sbjct: 313 tcctcggtgaacatatcaccatgagatgactcgatatctaaaatgagatcgagagcataa 254
Query: 707 tcataata 714
||||||||
Sbjct: 253 tcataata 246
>gb|BG159117.1|BG159117 RHIZ2_28_B02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 417
Score = 77.8 bits (39), Expect = 2e-012
Identities = 222/283 (78%)
Strand = Plus / Minus
Query: 594 catgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcgg 653
||||||| || || || |||||||| |||| ||| || || | |||||||||||| || |
Sbjct: 392 catgaatcaatccatagagcatctcagcagctgattcaatgagttcattttgctcttctg 333
Query: 654 taaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataat 713
| ||| ||| ||| ||||| |||| ||||| || |||||||| ||||| | ||||
Sbjct: 332 tgaacatatcaccatgggaagattcaacatctaatatcagatcaagcgcatagtagtaat 273
Query: 714 atggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcga 773
|||| || || || || || ||||||||||| |||||||| ||||| || || ||||| |
Sbjct: 272 atggaacttggttgcttagcccacacaggttgaaatcatcttgtatgtactcgtcatcaa 213
Query: 774 tctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcct 833
|||||| || || ||||| || | || ||||||||||||||||||| || || || |
Sbjct: 212 cctcacagaaaaactcattaccccttaaactacagaaccatgaaatccacgaagtatctt 153
Query: 834 ctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
| || || |||||||||||||| || ||||| ||||| |||||
Sbjct: 152 ccccatcagaaccactcacatctgattcttcgctgtcggtttc 110
>gb|BG159222.1|BG159222 RHIZ2_27_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 544
Score = 77.8 bits (39), Expect = 2e-012
Identities = 222/283 (78%)
Strand = Plus / Minus
Query: 594 catgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcgg 653
||||||| || || || |||||||| |||| ||| || || | |||||||||||| || |
Sbjct: 392 catgaatcaatccatagagcatctcagcagctgattcaatgagttcattttgctcttctg 333
Query: 654 taaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataat 713
| ||| ||| ||| ||||| |||| ||||| || |||||||| ||||| | ||||
Sbjct: 332 tgaacatatcaccatgggaagattcaacatctaatatcagatcaagcgcatagtagtaat 273
Query: 714 atggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcga 773
|||| || || || || || ||||||||||| |||||||| ||||| || || ||||| |
Sbjct: 272 atggaacttggttgcttagcccacacaggttgaaatcatcttgtatgtactcgtcatcaa 213
Query: 774 tctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcct 833
|||||| || || ||||| || | || ||||||||||||||||||| || || || |
Sbjct: 212 cctcacagaaaaactcattaccccttaaactacagaaccatgaaatccacgaagtatctt 153
Query: 834 ctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
| || || |||||||||||||| || ||||| ||||| |||||
Sbjct: 152 ccccatcagaaccactcacatctgattcttcgctgtcggtttc 110
>gb|AW286827.2|AW286827 LG1_222_A02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 73.8 bits (37), Expect = 3e-011
Identities = 150/188 (79%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
||| |||| |||||||| ||||||||| ||||||||| || || || ||||| | ||||
Sbjct: 501 ccanagtcatagttcttatacttctccagcattgcagccagtcctttactggtaagaatg 442
Query: 587 tatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgc 646
||||||||||| || | || || ||||||||||||| ||| || | | ||||| ||
Sbjct: 441 tatcgtgcatggatcagcccataaagcatctctgcagctgattctacaagctcattctgt 382
Query: 647 tcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataa 706
|||||||| ||| ||| ||| ||| ||||| || ||||| |||||||| || ||||||
Sbjct: 381 tcctcggtgaacatatcaccatgagatgactcgatatctaaaatgagatcgagagcataa 322
Query: 707 tcataata 714
||||||||
Sbjct: 321 tcataata 314
>gb|BG052677.1|BG052677 RHIZ2_28_B02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 437
Score = 73.8 bits (37), Expect = 3e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 169 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 110
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||||||| | ||| |||||||| |||||||||||
Sbjct: 109 ttcacatgcgggtatgtcatcaggaacaaatgggggaatgttgtcccaaagta 57
>gb|BZ339082.1|BZ339082 ic29f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic29f12 5', DNA sequence
Length = 677
Score = 65.9 bits (33), Expect = 8e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 219 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 278
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||||||| | || |||||||| |||||||||||
Sbjct: 279 ttcacatgcgggtatgtcatcaggaacaagtgggggaatgttgtcccaaagta 331
>gb|CL185139.1|CL185139 104_399_10899321_116_32394_047 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899321, DNA
sequence
Length = 674
Score = 65.9 bits (33), Expect = 8e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 166 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 107
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||||||| | || |||||||| |||||||||||
Sbjct: 106 ttcacatgcgggtatgtcatcaggaacaagtgggggaatgttgtcccaaagta 54
>gb|CW209191.1|CW209191 104_639_11189100_116_36988_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189100, DNA
sequence
Length = 716
Score = 65.9 bits (33), Expect = 8e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 331 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 390
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||||||| | || |||||||| |||||||||||
Sbjct: 391 ttcacatgcgggtatgtcatcaggaacaagtgggggaatgttgtcccaaagta 443
>gb|CW209192.1|CW209192 104_639_11189100_148_36987_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189100, DNA
sequence
Length = 698
Score = 65.9 bits (33), Expect = 8e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 426 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 367
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||||||| | || |||||||| |||||||||||
Sbjct: 366 ttcacatgcgggtatgtcatcaggaacaagtgggggaatgttgtcccaaagta 314
>gb|BG052663.1|BG052663 RHIZ2_27_H08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 65.9 bits (33), Expect = 8e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 230 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 171
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||| ||| | ||| |||||||| |||||||||||
Sbjct: 170 ttcacatgcgggtatgtcatcaagaacaaatgggggaatgttgtcccaaagta 118
>gb|CN138974.1|CN138974 OX1_15_F09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F09_A002 3', mRNA sequence
Length = 730
Score = 65.9 bits (33), Expect = 8e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 324 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 265
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||||||| | || |||||||| |||||||||||
Sbjct: 264 ttcacatgcgggtatgtcatcaggaacaagtgggggaatgttgtcccaaagta 212
>gb|CF480847.1|CF480847 POL1_68_G02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_G02_A002 3', mRNA sequence
Length = 742
Score = 60.0 bits (30), Expect = 5e-007
Identities = 94/114 (82%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||| |||||| || || ||||| ||| ||||||||| |||||||||| |||
Sbjct: 475 ggcttatgaattttgaacccaaataccctgggaacgtattgctgcaacggcttctggggc 416
Query: 323 ttcaagtgcgagtaagtcatcaggaa-aagatgagggaatgtcgtcccaaagta 375
|||| |||| ||| ||||||||||| ||| | |||||||| |||||||||||
Sbjct: 415 ttcacatgcgggtatgtcatcaggaacaagtggtgggaatgttgtcccaaagta 362
>gb|BG103736.1|BG103736 RHIZ2_40_B12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 628
Score = 58.0 bits (29), Expect = 2e-006
Identities = 79/95 (83%), Gaps = 3/95 (3%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||| ||||| | |||| ||| |||||||| || ||||||||||| || ||||||
Sbjct: 211 ggcttctgtggcttgaggtgctcgtatgtcatcagaaacagatgagggaacgttgtccca 152
Query: 371 aagtatgatccatcgatgttgccttggtacttgga 405
||||||| || ||||||| |||||||||||||
Sbjct: 151 aagtatgcgccgtcgatgt---cttggtacttgga 120
>gb|CN125521.1|CN125521 RHOH1_11_C10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_C10_A002 5', mRNA sequence
Length = 317
Score = 58.0 bits (29), Expect = 2e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
||||||||||||||||||| || || || || || || |||||||||||||| || ||||
Sbjct: 298 tacagaaccatgaaatccacgaagtatcttccccatcagaaccactcacatctgattctt 239
Query: 864 cactgtcagtttc 876
| ||||| |||||
Sbjct: 238 cgctgtcggtttc 226
>gb|CF480911.1|CF480911 POL1_68_G02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_G02_A002 5', mRNA sequence
Length = 542
Score = 50.1 bits (25), Expect = 5e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
||||||||||||||||||| || || || || || || ||||||||||||| || ||||
Sbjct: 526 tacagaaccatgaaatccacgaagtatcttccccatcagaaccactcacatgtgattctt 467
Query: 864 cactgtcagtttc 876
| ||||| |||||
Sbjct: 466 cgctgtcggtttc 454
>gb|CL177079.1|CL177079 104_384_10893587_148_31915_035 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893587, DNA
sequence
Length = 477
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
|||| |||||||| || |||||||| |||| |||||||||||||
Sbjct: 286 tctcgaggtgcttgtctagcgcgtcgctgatccgcttccggtcca 330
>gb|CW072101.1|CW072101 104_325_10592075_114_30535 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592075, DNA
sequence
Length = 545
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
|||| |||||||| || |||||||| |||| |||||||||||||
Sbjct: 285 tctcgaggtgcttgtctagcgcgtcgctgatccgcttccggtcca 329
>gb|CW182718.1|CW182718 104_598_11164228_148_36665_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164228, DNA
sequence
Length = 725
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
|||| |||||||| || |||||||| |||| |||||||||||||
Sbjct: 280 tctcgaggtgcttgtctagcgcgtcgctgatccgcttccggtcca 324
>gb|CW262993.1|CW262993 104_730_11230394_116_35227_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230394, DNA
sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1035 tccctgcgccgccgcagcagc 1055
|||||||||||||||||||||
Sbjct: 588 tccctgcgccgccgcagcagc 568
>gb|CW356403.1|CW356403 fsbb001f021h10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021h10, DNA
sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 905 ttgccaagcgacgacggcagcttcccggc 933
||||||||||||||||||| ||||||||
Sbjct: 567 ttgccaagcgacgacggcacgttcccggc 595
>gb|CW356404.1|CW356404 fsbb001f021h10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021h10, DNA
sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 905 ttgccaagcgacgacggcagcttcccggc 933
||||||||||||||||||| ||||||||
Sbjct: 397 ttgccaagcgacgacggcacgttcccggc 369
>gb|CW359625.1|CW359625 fsbb001f027f13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027f13, DNA
sequence
Length = 476
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1035 tccctgcgccgccgcagcagc 1055
|||||||||||||||||||||
Sbjct: 421 tccctgcgccgccgcagcagc 401
>gb|CW359626.1|CW359626 fsbb001f027f13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027f13, DNA
sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1035 tccctgcgccgccgcagcagc 1055
|||||||||||||||||||||
Sbjct: 552 tccctgcgccgccgcagcagc 572
>gb|CW361169.1|CW361169 fsbb001f029j11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029j11, DNA
sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 905 ttgccaagcgacgacggcagcttcccggc 933
||||||||||||||||||| ||||||||
Sbjct: 409 ttgccaagcgacgacggcacgttcccggc 437
>gb|CW361170.1|CW361170 fsbb001f029j11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029j11, DNA
sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 905 ttgccaagcgacgacggcagcttcccggc 933
||||||||||||||||||| ||||||||
Sbjct: 496 ttgccaagcgacgacggcacgttcccggc 468
>gb|CW409783.1|CW409783 fsbb001f104d20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104d20, DNA
sequence
Length = 716
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1035 tccctgcgccgccgcagcagc 1055
|||||||||||||||||||||
Sbjct: 482 tccctgcgccgccgcagcagc 462
>gb|CW409784.1|CW409784 fsbb001f104d20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104d20, DNA
sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1035 tccctgcgccgccgcagcagc 1055
|||||||||||||||||||||
Sbjct: 632 tccctgcgccgccgcagcagc 652
>gb|CD213675.1|CD213675 HS1_52_H08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_52_H08_A012 5', mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
|||| |||||||| || |||||||| |||| |||||||||||||
Sbjct: 299 tctcgaggtgcttgtctagcgcgtcgctgatccgcttccggtcca 255
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 295,815
Number of Sequences: 832831
Number of extensions: 295815
Number of successful extensions: 85021
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84887
Number of HSP's gapped (non-prelim): 87
length of query: 1153
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1133
effective length of database: 474,703,049
effective search space: 537838554517
effective search space used: 537838554517
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)