BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG948748.1|BG948748 LG1_330_B09.b1_A002 Light Grown 1 (L... 567 e-160
gb|CX608695.1|CX608695 ANR1_40_E04.b1_A002 Anaerobic roots ... 559 e-157
gb|CX608780.1|CX608780 ANR1_40_E04.g1_A002 Anaerobic roots ... 559 e-157
gb|CN147613.1|CN147613 WOUND1_50_G07.g1_A002 Wounded leaves... 557 e-157
gb|CN137511.1|CN137511 OX1_57_F09.g1_A002 Oxidatively-stres... 549 e-154
gb|CF772686.1|CF772686 DSBF1_38_B07.g1_A010 Drought-stresse... 504 e-141
gb|BE352878.1|BE352878 LG1_295_E09.g1_A002 Light Grown 1 (L... 454 e-126
gb|CN137437.1|CN137437 OX1_57_F09.b1_A002 Oxidatively-stres... 442 e-122
gb|BG048004.1|BG048004 OV1_26_E03.g1_A002 Ovary 1 (OV1) Sor... 436 e-120
gb|BG047650.1|BG047650 OV1_26_E03.b1_A002 Ovary 1 (OV1) Sor... 420 e-116
gb|BE593549.1|BE593549 WS1_100_F02.b1_A002 Water-stressed 1... 406 e-111
gb|BE593343.1|BE593343 WS1_100_F02.g1_A002 Water-stressed 1... 353 1e-095
gb|BZ342419.1|BZ342419 ic83d06.b1 WGS-SbicolorF (JM107 adap... 335 3e-090
gb|BZ628144.1|BZ628144 ih58b12.b1 WGS-SbicolorF (DH5a methy... 335 3e-090
gb|CW281247.1|CW281247 104_756_11408071_148_35453_018 Sorgh... 335 3e-090
gb|CD432106.1|CD432106 ETH1_26_A06.b1_A002 Ethylene-treated... 333 1e-089
gb|CD432203.1|CD432203 ETH1_26_A06.g1_A002 Ethylene-treated... 333 1e-089
gb|CW056425.1|CW056425 104_298_10517676_115_30157 Sorghum m... 311 5e-083
gb|CW058776.1|CW058776 104_301_10518927_114_30160 Sorghum m... 311 5e-083
gb|CW200534.1|CW200534 104_626_11184106_148_36867_045 Sorgh... 311 5e-083
gb|CW321435.1|CW321435 104_814_11475549_148_35938_083 Sorgh... 305 3e-081
gb|CF484027.1|CF484027 POL1_2_D10.g1_A002 Pollen Sorghum bi... 272 4e-071
gb|AW679925.1|AW679925 WS1_33_E12.g1_A002 Water-stressed 1 ... 266 3e-069
gb|AW745353.1|AW745353 WS1_33_E12.b1_A002 Water-stressed 1 ... 266 3e-069
gb|CW401589.1|CW401589 fsbb001f092h14f0 Sorghum methylation... 258 6e-067
gb|CW052880.1|CW052880 104_292_10515660_115_30190 Sorghum m... 180 1e-043
gb|CW052881.1|CW052881 104_292_10515660_115_30287 Sorghum m... 180 1e-043
gb|CW310460.1|CW310460 104_799_11469725_148_35749_021 Sorgh... 180 1e-043
gb|CW408461.1|CW408461 fsbb001f102f20f0 Sorghum methylation... 180 1e-043
gb|CW310459.1|CW310459 104_799_11469725_116_35745_021 Sorgh... 174 7e-042
gb|CD211819.1|CD211819 HS1_64_B01.g1_A012 Heat-shocked seed... 151 1e-034
gb|CW021136.1|CW021136 104_109_10409369_116_30501 Sorghum m... 137 2e-030
gb|CW321434.1|CW321434 104_814_11475549_116_35934_083 Sorgh... 129 4e-028
gb|CW281246.1|CW281246 104_756_11408071_116_35449_018 Sorgh... 115 6e-024
gb|CW335505.1|CW335505 104_834_11483075_116_36084_042 Sorgh... 115 6e-024
gb|BF656971.1|BF656971 OV2_19_D04.b1_A002 Ovary 2 (OV2) Sor... 103 2e-020
gb|CW052879.1|CW052879 104_292_10515660_114_30286 Sorghum m... 96 5e-018
gb|CW215179.1|CW215179 104_647_11194405_148_37166_057 Sorgh... 94 2e-017
gb|CW401590.1|CW401590 fsbb001f092h14k0 Sorghum methylation... 78 1e-012
gb|CW251260.1|CW251260 104_713_11223833_116_35064_067 Sorgh... 48 0.001
gb|CW251261.1|CW251261 104_713_11223833_148_35060_067 Sorgh... 48 0.001
gb|CW397781.1|CW397781 fsbb001f086o24k0 Sorghum methylation... 48 0.001
gb|CW084047.1|CW084047 104_426_10945543_116_32438_022 Sorgh... 44 0.017
gb|CL147899.1|CL147899 104_327_10592712_116_31781_220 Sorgh... 40 0.27
gb|CL177858.1|CL177858 104_385_10894137_148_31913_201 Sorgh... 40 0.27
gb|CL185855.1|CL185855 104_400_10899826_116_32405_043 Sorgh... 40 0.27
gb|CL187337.1|CL187337 104_402_10900809_114_32430_033 Sorgh... 40 0.27
gb|CW030837.1|CW030837 104_259_10500454_114_30397 Sorghum m... 40 0.27
gb|CW039937.1|CW039937 104_272_10505780_114_30389 Sorghum m... 40 0.27
gb|CW079714.1|CW079714 104_402_10900809_114_32571_033 Sorgh... 40 0.27
gb|CW135788.1|CW135788 104_520_11118032_148_34835_024 Sorgh... 40 0.27
gb|CW137047.1|CW137047 104_523_11119085_116_34870_027 Sorgh... 40 0.27
gb|CW270825.1|CW270825 104_742_11402654_148_35335_051 Sorgh... 40 0.27
gb|CW294426.1|CW294426 104_775_11415182_148_35609_057 Sorgh... 40 0.27
gb|CW302284.1|CW302284 104_786_11464640_148_35669_026 Sorgh... 40 0.27
gb|CW321806.1|CW321806 104_815_11475751_116_35947_026 Sorgh... 40 0.27
gb|CW321807.1|CW321807 104_815_11475751_148_35940_026 Sorgh... 40 0.27
gb|CW488731.1|CW488731 fsbb001f265e17k0 Sorghum methylation... 40 0.27
gb|BE918095.1|BE918095 OV1_1_G12.b1_A002 Ovary 1 (OV1) Sorg... 40 0.27
gb|CX607275.1|CX607275 ANR1_7_D10.g1_A002 Anaerobic roots S... 40 0.27
gb|CX613145.1|CX613145 GABR1_6_B09.g1_A002 GA- or brassinol... 40 0.27
gb|CX616873.1|CX616873 GABR1_30_A03.g1_A002 GA- or brassino... 40 0.27
>gb|BG948748.1|BG948748 LG1_330_B09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 567 bits (286), Expect = e-160
Identities = 407/445 (91%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 90 cctccaccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagt 149
||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 19 cctccgccatggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagt 78
Query: 150 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 138
Query: 210 acaacgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagt 269
||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 139 acaacgcggtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagt 198
Query: 270 acaagcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcac 329
|||||||||||||||| ||| | || || ||||| |||||| | ||||||||||||||||
Sbjct: 199 acaagcagatcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcac 258
Query: 330 ggagggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattcta 389
|||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| |
Sbjct: 259 ggagggccattaaggatctgatggcaagggggctcataaggatgatcgctgttcattcca 318
Query: 390 gccagcagatatacaccagggcaaccaacacatgaggggtgttttgcgtcttgcggacgt 449
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 319 gccagcagatatacaccagggcaaccaacacatgagggatgttttgcatcttgtcgatgt 378
Query: 450 tatc-agtctagacgacttgatgttgctat--tatatcaagtttaatttaatcgtggctc 506
|||| ||||||||||||||| ||||||||| ||||||||||||| || |||| ||||||
Sbjct: 379 tatctagtctagacgacttggtgttgctattatatatcaagtttatttcaatcatggctc 438
Query: 507 gatcaatcttactgttgtgttgaat 531
||||||||||||| ||||||||
Sbjct: 439 agtcaatcttactgtcatgttgaat 463
Score = 46.1 bits (23), Expect = 0.004
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 593 catgttgccatccaaattttaatcttggtgaggaatatcaaccaatctctgctct 647
|||||||||||||||| ||| |||||| ||||||| || || | |||||||||||
Sbjct: 494 catgttgccatccaaaattt-atcttgatgaggaacataaatctatctctgctct 547
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 tccgtcgctcgcctcacgcctccg 83
||||||||||||||||| ||||||
Sbjct: 1 tccgtcgctcgcctcactcctccg 24
>gb|CX608695.1|CX608695 ANR1_40_E04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_E04_A002 3', mRNA sequence
Length = 515
Score = 559 bits (282), Expect = e-157
Identities = 406/445 (91%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 90 cctccaccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagt 149
||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 9 cctccgccatggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagt 68
Query: 150 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 128
Query: 210 acaacgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagt 269
||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 129 acaacgcggtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagt 188
Query: 270 acaagcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcac 329
|||||||||||||||| ||| | || || ||||| |||||| | ||||||||||||||||
Sbjct: 189 acaagcagatcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcac 248
Query: 330 ggagggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattcta 389
|| ||||||| |||||||||||||||| |||||||||||||||| || |||||||||| |
Sbjct: 249 ggggggccattaaggatctgatggcaagggggctcataaggatgatcgctgttcattcca 308
Query: 390 gccagcagatatacaccagggcaaccaacacatgaggggtgttttgcgtcttgcggacgt 449
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 309 gccagcagatatacaccagggcaaccaacacatgagggatgttttgcatcttgtcgatgt 368
Query: 450 tatc-agtctagacgacttgatgttgctat--tatatcaagtttaatttaatcgtggctc 506
|||| ||||||||||||||| ||||||||| ||||||||||||| || |||| ||||||
Sbjct: 369 tatctagtctagacgacttggtgttgctattatatatcaagtttatttcaatcatggctc 428
Query: 507 gatcaatcttactgttgtgttgaat 531
||||||||||||| ||||||||
Sbjct: 429 agtcaatcttactgtcatgttgaat 453
>gb|CX608780.1|CX608780 ANR1_40_E04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_E04_A002 5', mRNA sequence
Length = 535
Score = 559 bits (282), Expect = e-157
Identities = 406/445 (91%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 90 cctccaccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagt 149
||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 32 cctccgccatggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagt 91
Query: 150 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 151
Query: 210 acaacgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagt 269
||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 152 acaacgcggtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagt 211
Query: 270 acaagcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcac 329
|||||||||||||||| ||| | || || ||||| |||||| | ||||||||||||||||
Sbjct: 212 acaagcagatcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcac 271
Query: 330 ggagggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattcta 389
|| ||||||| |||||||||||||||| |||||||||||||||| || |||||||||| |
Sbjct: 272 ggggggccattaaggatctgatggcaagggggctcataaggatgatcgctgttcattcca 331
Query: 390 gccagcagatatacaccagggcaaccaacacatgaggggtgttttgcgtcttgcggacgt 449
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 332 gccagcagatatacaccagggcaaccaacacatgagggatgttttgcatcttgtcgatgt 391
Query: 450 tatc-agtctagacgacttgatgttgctat--tatatcaagtttaatttaatcgtggctc 506
|||| ||||||||||||||| ||||||||| ||||||||||||| || |||| ||||||
Sbjct: 392 tatctagtctagacgacttggtgttgctattatatatcaagtttatttcaatcatggctc 451
Query: 507 gatcaatcttactgttgtgttgaat 531
||||||||||||| ||||||||
Sbjct: 452 agtcaatcttactgtcatgttgaat 476
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 ctccgtcgctcgcctcacgcctccg 83
|||||||||||||||||| ||||||
Sbjct: 13 ctccgtcgctcgcctcactcctccg 37
>gb|CN147613.1|CN147613 WOUND1_50_G07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_G07_A002 5', mRNA sequence
Length = 528
Score = 557 bits (281), Expect = e-157
Identities = 335/353 (94%)
Strand = Plus / Plus
Query: 90 cctccaccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagt 149
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 52 cctccgccatggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagt 111
Query: 150 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 171
Query: 210 acaacgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagt 269
||||| | ||||||||||| |||||||||||||| ||| || ||||||||||||||||||
Sbjct: 172 acaactcggtgctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagt 231
Query: 270 acaagcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcac 329
|||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||||||
Sbjct: 232 acaagcagatcaccccatccgtcctctccgagcgtctcaggattaatggatccttggcac 291
Query: 330 ggagggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattcta 389
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 292 ggagggccattaaggatctgatggcaagggggctcataaggatggtctctgttcattcca 351
Query: 390 gccagcagatatacaccagggcaaccaacacatgaggggtgttttgcgtcttg 442
|||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 352 gccagcagatatacaccagggcaaccaacacatgagggatgttttgcatcttg 404
Score = 103 bits (52), Expect = 2e-020
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 479 tatatcaagtttaatttaatcgtggctcgatcaatcttactgttgtgttgaatgtcgaat 538
||||||||||||| || |||| |||||| ||||||||||||||||||||||||| ||||
Sbjct: 431 tatatcaagtttatttcaatcatggctcagtcaatcttactgttgtgttgaatgttgaat 490
Query: 539 atttttgagattattgtactattttaag 566
|||||||| |||| |||||||||||||
Sbjct: 491 atttttgaagttatcgtactattttaag 518
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 41 ccgccgccgccgcttccgctccgtcgctcgcctcacgcctccg 83
|||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 15 ccgccgccgcgccctcccctccgtcgctcgcctcacgcctccg 57
>gb|CN137511.1|CN137511 OX1_57_F09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_F09_A002 5', mRNA sequence
Length = 573
Score = 549 bits (277), Expect = e-154
Identities = 334/353 (94%)
Strand = Plus / Plus
Query: 90 cctccaccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagt 149
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 30 cctccgccatggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagt 89
Query: 150 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtca 149
Query: 210 acaacgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagt 269
||||| | ||||||||||| |||||||||||||| ||| || ||||||||||||||||||
Sbjct: 150 acaactcggtgctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagt 209
Query: 270 acaagcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcac 329
|||||||||||||||||||| |||| || ||||| |||| | ||||||||||||||||||
Sbjct: 210 acaagcagatcaccccatccgtcctctccgagcgtctcatgattaatggatccttggcac 269
Query: 330 ggagggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattcta 389
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 270 ggagggccattaaggatctgatggcaagggggctcataaggatggtctctgttcattcca 329
Query: 390 gccagcagatatacaccagggcaaccaacacatgaggggtgttttgcgtcttg 442
|||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 330 gccagcagatatacaccagggcaaccaacacatgagggatgttttgcatcttg 382
Score = 103 bits (52), Expect = 2e-020
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 479 tatatcaagtttaatttaatcgtggctcgatcaatcttactgttgtgttgaatgtcgaat 538
||||||||||||| || |||| |||||| ||| |||||||||||||||||||||| ||||
Sbjct: 409 tatatcaagtttatttcaatcatggctcaatcgatcttactgttgtgttgaatgttgaat 468
Query: 539 atttttgagattattgtactattttaag 566
|||||||| |||| |||||||||||||
Sbjct: 469 atttttgaagttatcgtactattttaag 496
Score = 42.1 bits (21), Expect = 0.069
Identities = 42/48 (87%), Gaps = 2/48 (4%)
Strand = Plus / Plus
Query: 600 ccatccaaattttaatcttggtgaggaatatcaaccaatctctgctct 647
|||||||||| || ||| || ||||||||||||||| ||||||||||
Sbjct: 506 ccatccaaatatttatcctgatgaggaatatcaacc--tctctgctct 551
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tcgctcgcctcacgcctccg 83
||||||||||||||||||||
Sbjct: 16 tcgctcgcctcacgcctccg 35
>gb|CF772686.1|CF772686 DSBF1_38_B07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_38_B07_A010 3', mRNA sequence
Length = 462
Score = 504 bits (254), Expect = e-141
Identities = 366/401 (91%), Gaps = 3/401 (0%)
Strand = Plus / Plus
Query: 134 tccaagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaag 193
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccaagccggctaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaag 60
Query: 194 cagaaggagaaggtcaacaacgctgtgctcttcgatcaggccacctacgataagctgctc 253
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||
Sbjct: 61 cagaaggagaaggtcaacaacgcggtgctcttcgaccaggccacctacgacaagttgctc 120
Query: 254 tccgaggtgcccaagtacaagcagatcaccccatccatcctatctgagcgcctcagggtt 313
|||||||| ||||||||||||||||||||||| ||| | || || ||||| |||||| |
Sbjct: 121 tccgaggttcccaagtacaagcagatcaccccgtccgtgctctccgagcgtctcaggatc 180
Query: 314 aatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataaggatg 373
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 181 aatggatccttggcacggagggccattaaggatctgatggcaagggggctcataaggatg 240
Query: 374 gtctctgttcattctagccagcagatatacaccagggcaaccaacacatgaggggtgttt 433
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 241 atcgctgttcattccagccagcagatatacaccagggcaaccaacacatgagggatgttt 300
Query: 434 tgcgtcttgcggacgttatc-agtctagacgacttgatgttgctat--tatatcaagttt 490
||| ||||| || |||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct: 301 tgcatcttgtcgatgttatctagtctagacgacttggtgttgctattatatatcaagttt 360
Query: 491 aatttaatcgtggctcgatcaatcttactgttgtgttgaat 531
| || |||| |||||| ||||||||||||| ||||||||
Sbjct: 361 atttcaatcatggctcagtcaatcttactgtcatgttgaat 401
>gb|BE352878.1|BE352878 LG1_295_E09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 428
Score = 454 bits (229), Expect = e-126
Identities = 274/289 (94%)
Strand = Plus / Plus
Query: 154 aggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaa 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaa 60
Query: 214 cgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaa 273
| | |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct: 61 ctcggtgctcttcgatcaggccacctacgacaagttggtctccgaggtgcccaagtacaa 120
Query: 274 gcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggag 333
|||||||||||||||| |||| || ||||| |||||| ||||||||||||||||||||||
Sbjct: 121 gcagatcaccccatccgtcctctccgagcgtctcaggattaatggatccttggcacggag 180
Query: 334 ggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagcca 393
|||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 181 ggccattaaggatctgatggcaagggggctcataaggatggtctctgttcattccagcca 240
Query: 394 gcagatatacaccagggcaaccaacacatgaggggtgttttgcgtcttg 442
|||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 241 gcagatatacaccagggcaaccaacacatgagggatgttttgcatcttg 289
Score = 103 bits (52), Expect = 2e-020
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 479 tatatcaagtttaatttaatcgtggctcgatcaatcttactgttgtgttgaatgtcgaat 538
||||||||||||| || |||| |||||| ||||||||||||||||||||||||| ||||
Sbjct: 316 tatatcaagtttatttcaatcatggctcagtcaatcttactgttgtgttgaatgttgaat 375
Query: 539 atttttgagattattgtactattttaag 566
|||||||| |||| |||||||||||||
Sbjct: 376 atttttgaagttatcgtactattttaag 403
>gb|CN137437.1|CN137437 OX1_57_F09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_F09_A002 3', mRNA sequence
Length = 471
Score = 442 bits (223), Expect = e-122
Identities = 286/307 (93%)
Strand = Plus / Plus
Query: 136 caagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagca 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagca 60
Query: 196 gaaggagaaggtcaacaacgctgtgctcttcgatcaggccacctacgataagctgctctc 255
||||||||||||||||||| ||||||||||| ||| |||||| ||| ||| || ||||
Sbjct: 61 gaaggagaaggtcaacaacttggtgctcttcgaccagcccaccttcgacaagttggtctc 120
Query: 256 cgaggtgcccaagtacaagcagatcaccccatccatcctatctgagcgcctcagggttaa 315
|||||||||||||||||||||||||||||||||| |||| || ||||| |||||| ||||
Sbjct: 121 cgaggtgcccaagtacaagcagatcaccccatccgtcctctccgagcgtctcaggattaa 180
Query: 316 tggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataaggatggt 375
|||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct: 181 tggatcctcggcacggagggccattaaggatctgacggcaagggggctcataaggatggt 240
Query: 376 ctctgttcattctagccagcagatatacaccagggcaaccaacacatgaggggtgttttg 435
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 ctctgttcattccagccagcagatatacaccagggcaaccaacacatgagggatgttttg 300
Query: 436 cgtcttg 442
| |||||
Sbjct: 301 catcttg 307
Score = 103 bits (52), Expect = 2e-020
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 479 tatatcaagtttaatttaatcgtggctcgatcaatcttactgttgtgttgaatgtcgaat 538
||||||||||||| || |||| |||||| ||||||||||||||||||||||||| ||||
Sbjct: 334 tatatcaagtttatttcaatcatggctcagtcaatcttactgttgtgttgaatgttgaat 393
Query: 539 atttttgagattattgtactattttaag 566
|||||||| |||| |||||||||||||
Sbjct: 394 atttttgaagttatcgtactattttaag 421
Score = 40.1 bits (20), Expect = 0.27
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 600 ccatccaaattttaatcttggtgaggaatatcaacc 635
|||||||||| || ||| || |||||||||||||||
Sbjct: 431 ccatccaaatatttatcctgatgaggaatatcaacc 466
>gb|BG048004.1|BG048004 OV1_26_E03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 371
Score = 436 bits (220), Expect = e-120
Identities = 329/363 (90%), Gaps = 3/363 (0%)
Strand = Plus / Plus
Query: 172 gaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatca 231
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 8 gaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggtgctcttcgacca 67
Query: 232 ggccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccat 291
|||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 68 ggccacctacgacaagttgctctccgaggttcccaagtacaagcagatcaccccgtccgt 127
Query: 292 cctatctgagcgcctcagggttaatggatccttggcacggagggccatcaaggatctgat 351
|| || ||||| |||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct: 128 gctctccgagcgtctcaggatcaatggatccttggcacggagggccattaaggatctgat 187
Query: 352 ggcaaaggggctcataaggatggtctctgttcattctagccagcagatatacaccagggc 411
||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct: 188 ggcaagggggctcataaggatgatcgctgttcattccagccagcagatatacaccagggc 247
Query: 412 aaccaacacatgaggggtgttttgcgtcttgcggacgttatc-agtctagacgacttgat 470
|||||||||||||||| |||||||| ||||| || |||||| ||||||||||||||| |
Sbjct: 248 aaccaacacatgagggatgttttgcatcttgtcgatgttatctagtctagacgacttggt 307
Query: 471 gttgctat--tatatcaagtttaatttaatcgtggctcgatcaatcttactgttgtgttg 528
|||||||| ||||||||||||| || |||| |||||| ||||||||||||| |||||
Sbjct: 308 gttgctattatatatcaagtttatttcaatcatggctcagtcaatcttactgtcatgttg 367
Query: 529 aat 531
|||
Sbjct: 368 aat 370
>gb|BG047650.1|BG047650 OV1_26_E03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 430
Score = 420 bits (212), Expect = e-116
Identities = 328/363 (90%), Gaps = 4/363 (1%)
Strand = Plus / Plus
Query: 172 gaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatca 231
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 8 gaagaagtggagcaagggtaagcagaaggagaaggt-aacaacgcggtgctcttcgacca 66
Query: 232 ggccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccat 291
|||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 67 ggccacctacgacaagttgctctccgaggttcccaagtacaagcagatcaccccgtccgt 126
Query: 292 cctatctgagcgcctcagggttaatggatccttggcacggagggccatcaaggatctgat 351
|| || ||||| |||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct: 127 gctctccgagcgtctcaggatcaatggatccttggcacggagggccattaaggatctgat 186
Query: 352 ggcaaaggggctcataaggatggtctctgttcattctagccagcagatatacaccagggc 411
||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct: 187 ggcaagggggctcataaggatgatcgctgttcattccagccagcagatatacaccagggc 246
Query: 412 aaccaacacatgaggggtgttttgcgtcttgcggacgttatc-agtctagacgacttgat 470
|||||||||||||||| |||||||| ||||| || |||||| ||||||||||||||| |
Sbjct: 247 aaccaacacatgagggatgttttgcatcttgtcgatgttatctagtctagacgacttggt 306
Query: 471 gttgctat--tatatcaagtttaatttaatcgtggctcgatcaatcttactgttgtgttg 528
|||||||| ||||||||||||| || |||| |||||| ||||||||||||| |||||
Sbjct: 307 gttgctattatatatcaagtttatttcaatcatggctcagtcaatcttactgtcatgttg 366
Query: 529 aat 531
|||
Sbjct: 367 aat 369
>gb|BE593549.1|BE593549 WS1_100_F02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 325
Score = 406 bits (205), Expect = e-111
Identities = 266/287 (92%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 39 ccatggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggag 98
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 158
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct: 159 cggtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagc 218
Query: 276 agatcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggaggg 335
|||||||||| ||| | || || ||||| |||||| | ||||||||||||||||||||||
Sbjct: 219 agatcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcacggaggg 278
Query: 336 ccatcaaggatctgatggcaaaggggctcataaggatggtctctgtt 382
|||| ||||||||||||||| |||||||||||||||| || |||||
Sbjct: 279 ccatnnaggatctgatggcaagggggctcataaggatgatcgctgtt 325
>gb|BE593343.1|BE593343 WS1_100_F02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 329
Score = 353 bits (178), Expect = 1e-095
Identities = 284/317 (89%), Gaps = 3/317 (0%)
Strand = Plus / Plus
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct: 8 gtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcag 67
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || || ||||| |||||| | ||||||||||||||||||||||||
Sbjct: 68 atcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcacggagggcc 127
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
|| |||||||||||||||| |||||||||||||||| || |||||||||| |||||||||
Sbjct: 128 attaaggatctgatggcaagggggctcataaggatgatcgctgttcattccagccagcag 187
Query: 398 atatacaccagggcaaccaacacatgaggggtgttttgcgtcttgcggacgttatc-agt 456
|||||||||||||||||||||||||||||| |||||||| ||||| || |||||| |||
Sbjct: 188 atatacaccagggcaaccaacacatgagggatgttttgcatcttgtcgatgttatctagt 247
Query: 457 ctagacgacttgatgttgctat--tatatcaagtttaatttaatcgtggctcgatcaatc 514
|||||||||||| ||||||||| ||||||||||||| || |||| |||||| ||||||
Sbjct: 248 ctagacgacttggtgttgctattatatatcaagtttatttcaatcatggctcagtcaatc 307
Query: 515 ttactgttgtgttgaat 531
||||||| ||||||||
Sbjct: 308 ttactgtcatgttgaat 324
>gb|BZ342419.1|BZ342419 ic83d06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic83d06 5', DNA sequence
Length = 694
Score = 335 bits (169), Expect = 3e-090
Identities = 202/213 (94%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 412 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 471
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 472 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcggt 531
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagat 279
||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct: 532 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagat 591
Query: 280 caccccatccatcctatctgagcgcctcagggt 312
|||||||||| |||| || ||||| ||||||||
Sbjct: 592 caccccatccgtcctctccgagcgtctcagggt 624
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 41 ccgccgccgccgcttccgctccgtcgctcgcctcacgcctccg 83
|||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 286 ccgccgccgcgccctcccctccgtcgctcgcctcacgcctccg 328
>gb|BZ628144.1|BZ628144 ih58b12.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih58b12 5', DNA sequence
Length = 828
Score = 335 bits (169), Expect = 3e-090
Identities = 202/213 (94%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 582 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 523
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 522 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcggt 463
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagat 279
||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct: 462 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagat 403
Query: 280 caccccatccatcctatctgagcgcctcagggt 312
|||||||||| |||| || ||||| ||||||||
Sbjct: 402 caccccatccgtcctctccgagcgtctcagggt 370
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 41 ccgccgccgccgcttccgctccgtcgctcgcctcacgcctccg 83
|||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 708 ccgccgccgcgccctcccctccgtcgctcgcctcacgcctccg 666
>gb|CW281247.1|CW281247 104_756_11408071_148_35453_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408071, DNA
sequence
Length = 607
Score = 335 bits (169), Expect = 3e-090
Identities = 202/213 (94%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 445
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 444 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcggt 385
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagat 279
||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct: 384 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagat 325
Query: 280 caccccatccatcctatctgagcgcctcagggt 312
|||||||||| |||| || ||||| ||||||||
Sbjct: 324 caccccatccgtcctctccgagcgtctcagggt 292
>gb|CD432106.1|CD432106 ETH1_26_A06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_A06_A002 3', mRNA sequence
Length = 611
Score = 333 bits (168), Expect = 1e-089
Identities = 282/320 (88%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 87 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggt 146
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 147 ggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggtgaacaacgct 206
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 207 gtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaagtacaagcag 266
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| |||| || |||||| | ||| | ||||| ||| | || |||||||||
Sbjct: 267 atcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgctcggagggcc 326
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
|||||||| |||||||| || ||||| |||||||| |||| || || |||||||||
Sbjct: 327 atcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactcaagccagcag 386
Query: 398 atatacaccagggcaaccaa 417
|| |||||||||||||||||
Sbjct: 387 atctacaccagggcaaccaa 406
>gb|CD432203.1|CD432203 ETH1_26_A06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_A06_A002 5', mRNA sequence
Length = 609
Score = 333 bits (168), Expect = 1e-089
Identities = 282/320 (88%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 89 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggt 148
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 149 ggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggtgaacaacgct 208
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 209 gtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaagtacaagcag 268
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| |||| || |||||| | ||| | ||||| ||| | || |||||||||
Sbjct: 269 atcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgctcggagggcc 328
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
|||||||| |||||||| || ||||| |||||||| |||| || || |||||||||
Sbjct: 329 atcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactcaagccagcag 388
Query: 398 atatacaccagggcaaccaa 417
|| |||||||||||||||||
Sbjct: 389 atctacaccagggcaaccaa 408
>gb|CW056425.1|CW056425 104_298_10517676_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517676, DNA
sequence
Length = 414
Score = 311 bits (157), Expect = 5e-083
Identities = 199/213 (93%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 412 ggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggcgg 353
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 352 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggt 293
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagat 279
||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 292 gctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcagat 233
Query: 280 caccccatccatcctatctgagcgcctcagggt 312
|||||| ||| | || || ||||| ||||||||
Sbjct: 232 caccccgtccgtgctctccgagcgtctcagggt 200
>gb|CW058776.1|CW058776 104_301_10518927_114_30160 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518927, DNA
sequence
Length = 609
Score = 311 bits (157), Expect = 5e-083
Identities = 199/213 (93%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 240 ggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggcgg 181
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 180 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggt 121
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagat 279
||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 120 gctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcagat 61
Query: 280 caccccatccatcctatctgagcgcctcagggt 312
|||||| ||| | || || ||||| ||||||||
Sbjct: 60 caccccgtccgtgctctccgagcgtctcagggt 28
Score = 50.1 bits (25), Expect = 3e-004
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 40 cccgccgccgccgct-tccgctccgtcgctcgcctcacgcctccg 83
|||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 365 cccgccgccgccgccctcctctccgtcgctcgcctcactcctccg 321
>gb|CW200534.1|CW200534 104_626_11184106_148_36867_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184106, DNA
sequence
Length = 714
Score = 311 bits (157), Expect = 5e-083
Identities = 199/213 (93%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 30 ggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggcgg 89
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 90 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggt 149
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagat 279
||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 150 gctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcagat 209
Query: 280 caccccatccatcctatctgagcgcctcagggt 312
|||||| ||| | || || ||||| ||||||||
Sbjct: 210 caccccgtccgtgctctccgagcgtctcagggt 242
>gb|CW321435.1|CW321435 104_814_11475549_148_35938_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475549, DNA
sequence
Length = 664
Score = 305 bits (154), Expect = 3e-081
Identities = 200/214 (93%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 18 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 77
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||
Sbjct: 78 gaagcagaagaagaagaagtggagcaagggtatgcagaaggggaaggtcaacaactcggt 137
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag-a 278
||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||| |
Sbjct: 138 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagaa 197
Query: 279 tcaccccatccatcctatctgagcgcctcagggt 312
||||||||||| |||| || ||||| ||||||||
Sbjct: 198 tcaccccatccgtcctctccgagcgtctcagggt 231
>gb|CF484027.1|CF484027 POL1_2_D10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_2_D10_A002 5', mRNA sequence
Length = 502
Score = 272 bits (137), Expect = 4e-071
Identities = 245/281 (87%)
Strand = Plus / Minus
Query: 137 aagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcag 196
||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct: 502 aagcccgccaagtccggcggtggcaagcagaagaagaagaagtggagcaagggtaagcaa 443
Query: 197 aaggagaaggtcaacaacgctgtgctcttcgatcaggccacctacgataagctgctctcc 256
||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||||||||
Sbjct: 442 aaggagaaggtgaacaacgctgtgctgttcgaccaggccacctgcgacaagctgctctct 383
Query: 257 gaggtgcccaagtacaagcagatcaccccatccatcctatctgagcgcctcagggttaat 316
||||||||||||||||||||||||||||| ||| |||| || |||||| | ||| | |||
Sbjct: 382 gaggtgcccaagtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaat 323
Query: 317 ggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataaggatggtc 376
|| ||| | || ||||||||||||||||| |||||||| || ||||| ||||||||
Sbjct: 322 ggctcccttgctcggagggccatcaaggacctgatggcgcgtggcctcatccggatggtc 263
Query: 377 tctgttcattctagccagcagatatacaccagggcaaccaa 417
|||| || || ||||||||||| |||||||||||||||||
Sbjct: 262 gctgtccactcaagccagcagatctacaccagggcaaccaa 222
>gb|AW679925.1|AW679925 WS1_33_E12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 464
Score = 266 bits (134), Expect = 3e-069
Identities = 236/270 (87%)
Strand = Plus / Plus
Query: 148 gtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggt 207
|||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9 gtccggcggtggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggt 68
Query: 208 caacaacgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaa 267
|||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 69 gaacaacgctgtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaa 128
Query: 268 gtacaagcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggc 327
|||||||||||||||||| ||| |||| || |||||| | ||| | ||||| ||| | ||
Sbjct: 129 gtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgc 188
Query: 328 acggagggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattc 387
||||||||||||||||| |||||||| || ||||| |||||||| |||| || ||
Sbjct: 189 tcggagggccatcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactc 248
Query: 388 tagccagcagatatacaccagggcaaccaa 417
||||||||||| |||||||||||||||||
Sbjct: 249 aagccagcagatctacaccagggcaaccaa 278
>gb|AW745353.1|AW745353 WS1_33_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 266 bits (134), Expect = 3e-069
Identities = 236/270 (87%)
Strand = Plus / Plus
Query: 148 gtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggt 207
|||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9 gtccggcggtggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggt 68
Query: 208 caacaacgctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaa 267
|||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 69 gaacaacgctgtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaa 128
Query: 268 gtacaagcagatcaccccatccatcctatctgagcgcctcagggttaatggatccttggc 327
|||||||||||||||||| ||| |||| || |||||| | ||| | ||||| ||| | ||
Sbjct: 129 gtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgc 188
Query: 328 acggagggccatcaaggatctgatggcaaaggggctcataaggatggtctctgttcattc 387
||||||||||||||||| |||||||| || ||||| |||||||| |||| || ||
Sbjct: 189 tcggagggccatcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactc 248
Query: 388 tagccagcagatatacaccagggcaaccaa 417
||||||||||| |||||||||||||||||
Sbjct: 249 aagccagcagatctacaccagggcaaccaa 278
>gb|CW401589.1|CW401589 fsbb001f092h14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092h14, DNA
sequence
Length = 541
Score = 258 bits (130), Expect = 6e-067
Identities = 163/174 (93%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 368 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 427
Query: 160 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgt 219
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||
Sbjct: 428 gaagcagaagaagaagaagtggagcaagggcaagcagaatgagaaggtcaacaactcggt 487
Query: 220 gctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaa 273
||||||||| | |||||||||||| ||||| || |||||||||||||||||||
Sbjct: 488 gctcttcgacccggccacctacgaccagctggtccccgaggtgcccaagtacaa 541
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 41 ccgccgccgccgcttccgctccgtcgctcgcctcacgcctccg 83
|||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 242 ccgccgccgcgccctcccctccgtcgctcgcctcacgcctccg 284
>gb|CW052880.1|CW052880 104_292_10515660_115_30190 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515660, DNA
sequence
Length = 535
Score = 180 bits (91), Expect = 1e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 403 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 344
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 343 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 284
Query: 294 tatctgagcgc 304
| || ||||||
Sbjct: 283 tctccgagcgc 273
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 137 aagccggccaagtccggaggcgggaagcagaagaagaag 175
||||| ||||||||||| || || |||||||||||||||
Sbjct: 535 aagcccgccaagtccggcggtggcaagcagaagaagaag 497
>gb|CW052881.1|CW052881 104_292_10515660_115_30287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515660, DNA
sequence
Length = 742
Score = 180 bits (91), Expect = 1e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 403 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 344
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 343 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 284
Query: 294 tatctgagcgc 304
| || ||||||
Sbjct: 283 tctccgagcgc 273
Score = 95.6 bits (48), Expect = 5e-018
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct: 572 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 513
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 512 caagcagaagaagaag 497
>gb|CW310460.1|CW310460 104_799_11469725_148_35749_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469725, DNA
sequence
Length = 655
Score = 180 bits (91), Expect = 1e-043
Identities = 121/131 (92%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 223 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 282
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 283 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 342
Query: 294 tatctgagcgc 304
| || ||||||
Sbjct: 343 tctccgagcgc 353
Score = 95.6 bits (48), Expect = 5e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct: 54 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 113
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 114 caagcagaagaagaag 129
>gb|CW408461.1|CW408461 fsbb001f102f20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102f20, DNA
sequence
Length = 698
Score = 180 bits (91), Expect = 1e-043
Identities = 121/131 (92%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 226 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 285
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 286 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 345
Query: 294 tatctgagcgc 304
| || ||||||
Sbjct: 346 tctccgagcgc 356
Score = 95.6 bits (48), Expect = 5e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct: 57 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 116
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 117 caagcagaagaagaag 132
>gb|CW310459.1|CW310459 104_799_11469725_116_35745_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469725, DNA
sequence
Length = 681
Score = 174 bits (88), Expect = 7e-042
Identities = 120/131 (91%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 548 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 489
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 488 ccacntacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 429
Query: 294 tatctgagcgc 304
| || ||||||
Sbjct: 428 tctccgagcgc 418
>gb|CD211819.1|CD211819 HS1_64_B01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_B01_A012 5', mRNA sequence
Length = 551
Score = 151 bits (76), Expect = 1e-034
Identities = 168/197 (85%), Gaps = 5/197 (2%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||| ||||||||| |||||||| || | ||||| ||||| ||||||||||| ||
Sbjct: 89 atggccctgaagaaggacaaggcccc--cgtcgtcgtcgaagcccgccaagtccggcggt 146
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| | || ||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 147 ggca---agtggaagaagaagtggagcaagggtaagcaaaaggagaaggtgaagaacgcg 203
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| | |||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 204 gtgctgttcgacctggccacctacgacaagcttctctctcaggtgcccaagtacaagcag 263
Query: 278 atcaccccatccatcct 294
|||||||| ||| ||||
Sbjct: 264 atcaccccctccgtcct 280
>gb|CW021136.1|CW021136 104_109_10409369_116_30501 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409369, DNA
sequence
Length = 532
Score = 137 bits (69), Expect = 2e-030
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 101 gccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcggg 160
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 452 gccccgaagaaagagaaggccccgccgccgtcgtccaagccggccaagtccggaagcggg 511
Query: 161 aagcagaagaagaagaagtgg 181
|||||||||||||||||||||
Sbjct: 512 aagcagaagaagaagaagtgg 532
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 41 ccgccgccgccgcttccgctccgtcgctcgcctcacgcctccg 83
|||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 325 ccgccgccgcgccctcccctccgtcgctcgcctcacgcctccg 367
>gb|CW321434.1|CW321434 104_814_11475549_116_35934_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475549, DNA
sequence
Length = 476
Score = 129 bits (65), Expect = 4e-028
Identities = 112/125 (89%), Gaps = 2/125 (1%)
Strand = Plus / Minus
Query: 188 ggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcaggccacctacgataag 247
|||||||||||||||||| |||||||| | ||| ||||||| |||||||| ||||| |||
Sbjct: 474 ggtaagcagaaggagaag-tcaacaactcggtg-tcttcgaccaggccacttacgacaag 417
Query: 248 ctgctctccgaggtgcccaagtacaagcagatcaccccatccatcctatctgagcgcctc 307
|| |||||||||||||||||||||||||||||||||||||| |||| || ||||| |||
Sbjct: 416 ttggtctccgaggtgcccaagtacaagcagatcaccccatccgtcctctccgagcgtctc 357
Query: 308 agggt 312
|||||
Sbjct: 356 agggt 352
>gb|CW281246.1|CW281246 104_756_11408071_116_35449_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408071, DNA
sequence
Length = 360
Score = 115 bits (58), Expect = 6e-024
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 291 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccgggagcgg 350
Query: 160 gaagcagaag 169
||||||||||
Sbjct: 351 gaagcagaag 360
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 41 ccgccgccgccgcttccgctccgtcgctcgcctcacgcctccg 83
|||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 165 ccgccgccgcgccctcccctccgtcgctcgcctcacgcctccg 207
>gb|CW335505.1|CW335505 104_834_11483075_116_36084_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483075, DNA
sequence
Length = 290
Score = 115 bits (58), Expect = 6e-024
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 314 aatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataaggatg 373
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 76 aatggatccttggcacggagggccattaaggatctgatggcaagggggctcataaggatg 17
Query: 374 gtctctgttcattc 387
|| ||||||||||
Sbjct: 16 atcgctgttcattc 3
>gb|BF656971.1|BF656971 OV2_19_D04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 360
Score = 103 bits (52), Expect = 2e-020
Identities = 133/160 (83%)
Strand = Plus / Minus
Query: 258 aggtgcccaagtacaagcagatcaccccatccatcctatctgagcgcctcagggttaatg 317
|||||||||||||||||||||||||||| ||| |||| || |||||| | ||| | ||||
Sbjct: 360 aggtgcccaagtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaatg 301
Query: 318 gatccttggcacggagggccatcaaggatctgatggcaaaggggctcataaggatggtct 377
| ||| | || ||||||||||||||||| ||||||| || |||| ||||||||
Sbjct: 300 gctcccttgctcggagggccatcaaggacttgatggcgcgtggcttcatccggatggtcg 241
Query: 378 ctgttcattctagccagcagatatacaccagggcaaccaa 417
|||| || || ||||||||||| |||||||||||||||||
Sbjct: 240 ctgtccactcaagccagcagatctacaccagggcaaccaa 201
>gb|CW052879.1|CW052879 104_292_10515660_114_30286 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515660, DNA
sequence
Length = 494
Score = 95.6 bits (48), Expect = 5e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct: 309 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 368
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 369 caagcagaagaagaag 384
>gb|CW215179.1|CW215179 104_647_11194405_148_37166_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194405, DNA
sequence
Length = 664
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 230 caggccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatcc 289
|||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 661 caggccacctacgacaagttgctctccgaggttcccaagtacaagcagatcaccccgtcc 602
Query: 290 atcctatctgagcgcctcagggt 312
| || || ||||| ||||||||
Sbjct: 601 gtgctctccgagcgtctcagggt 579
>gb|CW401590.1|CW401590 fsbb001f092h14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092h14, DNA
sequence
Length = 585
Score = 77.8 bits (39), Expect = 1e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 258 aggtgcccaagtacaagcagatcaccccatccatcctatctgagcgcctcagggt 312
|||||||||||||||||||||||||||||||| |||| || ||||| ||||||||
Sbjct: 585 aggtgcccaagtacaagcagatcaccccatccgtcctctccgagcgtctcagggt 531
>gb|CW251260.1|CW251260 104_713_11223833_116_35064_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223833, DNA
sequence
Length = 661
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggca 355
||||||| ||| |||| ||||||||||||||||| ||||||||
Sbjct: 392 ttaatggctccctggctcggagggccatcaaggacttgatggca 349
Score = 40.1 bits (20), Expect = 0.27
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 370 gatggtctctgttcattctagccagcagatatacaccagggcaaccaa 417
||||||||| || || || || |||||| | |||||||||||||||||
Sbjct: 333 gatggtctcagtgcactcaaggcagcaggtctacaccagggcaaccaa 286
>gb|CW251261.1|CW251261 104_713_11223833_148_35060_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223833, DNA
sequence
Length = 651
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggca 355
||||||| ||| |||| ||||||||||||||||| ||||||||
Sbjct: 576 ttaatggctccctggctcggagggccatcaaggacttgatggca 619
>gb|CW397781.1|CW397781 fsbb001f086o24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086o24, DNA
sequence
Length = 789
Score = 48.1 bits (24), Expect = 0.001
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 104 ccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgggaag 163
||||| ||||| |||||| ||||||| |||| |||| ||||||||| || || | |||
Sbjct: 340 ccgaacaaggacaaggcctcgccgccgccgtcaaagctggccaagtctggcggtgtcaag 399
Query: 164 cagaagaagaag 175
||||||||||||
Sbjct: 400 cagaagaagaag 411
>gb|CW084047.1|CW084047 104_426_10945543_116_32438_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945543, DNA
sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.017
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 603 tccaaattttaatcttggtgaggaatatcaaccaatctctgctct 647
||||||| || |||||| ||||||||||||||| ||||||||||
Sbjct: 1 tccaaatatttatcttgatgaggaatatcaacc--tctctgctct 43
>gb|CL147899.1|CL147899 104_327_10592712_116_31781_220 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592712, DNA
sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 41 ccgccgccgccgcttccgct 60
||||||||||||||||||||
Sbjct: 679 ccgccgccgccgcttccgct 660
>gb|CL177858.1|CL177858 104_385_10894137_148_31913_201 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894137, DNA
sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 155 ggcgggaagcagaagaagaagaag 178
||||||||| ||||||||||||||
Sbjct: 510 ggcgggaagaagaagaagaagaag 487
>gb|CL185855.1|CL185855 104_400_10899826_116_32405_043 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899826, DNA
sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 160 gaagcagaagaagaagaagtggag 183
|||| |||||||||||||||||||
Sbjct: 148 gaagaagaagaagaagaagtggag 125
>gb|CL187337.1|CL187337 104_402_10900809_114_32430_033 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900809, DNA
sequence
Length = 332
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 155 ggcgggaagcagaagaagaagaag 178
||||||||| ||||||||||||||
Sbjct: 96 ggcgggaagaagaagaagaagaag 73
>gb|CW030837.1|CW030837 104_259_10500454_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500454, DNA
sequence
Length = 804
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 155 ggcgggaagcagaagaagaagaag 178
||||||||| ||||||||||||||
Sbjct: 176 ggcgggaagaagaagaagaagaag 199
>gb|CW039937.1|CW039937 104_272_10505780_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505780, DNA
sequence
Length = 349
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 160 gaagcagaagaagaagaagtggag 183
|||| |||||||||||||||||||
Sbjct: 139 gaagaagaagaagaagaagtggag 116
>gb|CW079714.1|CW079714 104_402_10900809_114_32571_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900809, DNA
sequence
Length = 325
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 155 ggcgggaagcagaagaagaagaag 178
||||||||| ||||||||||||||
Sbjct: 95 ggcgggaagaagaagaagaagaag 72
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 362,522
Number of Sequences: 832831
Number of extensions: 362522
Number of successful extensions: 147805
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147605
Number of HSP's gapped (non-prelim): 129
length of query: 713
length of database: 491,359,669
effective HSP length: 20
effective length of query: 693
effective length of database: 474,703,049
effective search space: 328969212957
effective search space used: 328969212957
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)