BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced ... 658 0.0
gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced ... 658 0.0
gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Mer... 571 e-161
gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Mer... 545 e-153
gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorgh... 224 8e-057
gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorgh... 224 8e-057
gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorgh... 208 5e-052
gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorgh... 204 8e-051
gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sor... 196 2e-048
gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sor... 196 2e-048
gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/ce... 196 2e-048
gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/ce... 196 2e-048
gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/c... 196 2e-048
gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves... 196 2e-048
gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves... 196 2e-048
gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum met... 188 5e-046
gb|CW083473.1|CW083473 104_425_10944264_116_32355_084 Sorgh... 139 4e-031
gb|CW022583.1|CW022583 104_162_10431932_1_30008 Sorghum met... 82 8e-014
gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorgh... 82 8e-014
gb|CW246896.1|CW246896 104_707_11221527_116_35084_052 Sorgh... 82 8e-014
gb|CL164331.1|CL164331 104_358_10807835_114_31814_203 Sorgh... 78 1e-012
gb|CL164332.1|CL164332 104_358_10807835_116_31815_203 Sorgh... 78 1e-012
gb|CW046125.1|CW046125 104_283_10509983_114_30137 Sorghum m... 78 1e-012
gb|CW460476.1|CW460476 fsbb001f207l02k0 Sorghum methylation... 78 1e-012
gb|CW296834.1|CW296834 104_778_11461725_116_35630_083 Sorgh... 74 2e-011
gb|CW296835.1|CW296835 104_778_11461725_148_35634_083 Sorgh... 74 2e-011
gb|CW460475.1|CW460475 fsbb001f207l02f0 Sorghum methylation... 64 2e-008
gb|CW355943.1|CW355943 fsbb001f020m20f0 Sorghum methylation... 46 0.004
gb|CW046126.1|CW046126 104_283_10509983_115_30138 Sorghum m... 40 0.26
gb|CW161652.1|CW161652 104_568_11150526_148_36435_021 Sorgh... 40 0.26
>gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 618
Score = 658 bits (332), Expect = 0.0
Identities = 380/396 (95%)
Strand = Plus / Minus
Query: 282 ggttgggcgatcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaaca 341
|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 457 ggttgggcaatcagtttgggttcctcagaacgatgatgaccgagtcgcccctgaggaaca 398
Query: 342 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 338
Query: 402 tggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaa 278
Query: 462 aagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgt 521
|||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 277 aagcgcgaacccggccaagtagtttcttgttgttgcggcaattgatgagcacctgggtgt 218
Query: 522 tgttcttaacactcatcattagtactgacagagggcctgtgctaaattcctcttcctctt 581
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 217 tgttcttaacactcatcattaggactgacagagggcctgtgctaaattcctcctcctctt 158
Query: 582 tcttcccagcctcattctcgtccgccatcgcctagcctccgccctccttctccgcgccgg 641
|||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tctttccagcctgattctcatccgccatcgcctagcctccgccctccttctccgcgccgg 98
Query: 642 tggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||||||||| | |||||||||||||
Sbjct: 97 cggcgagtcgctccgggtggtgctggtgcgctccga 62
Score = 89.7 bits (45), Expect = 3e-016
Identities = 68/75 (90%), Gaps = 3/75 (4%)
Strand = Plus / Minus
Query: 198 cacatgaacgtcagttcaagataaccagttaatcatccccaacatacatcataagctaca 257
|||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||
Sbjct: 575 cacatgaacgtcagttcaaggtaaccagttaatcctccaaaacata---cataagctaca 519
Query: 258 gttttcaacagagac 272
|||||||||||||||
Sbjct: 518 gttttcaacagagac 504
>gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 658 bits (332), Expect = 0.0
Identities = 380/396 (95%)
Strand = Plus / Minus
Query: 282 ggttgggcgatcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaaca 341
|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 457 ggttgggcaatcagtttgggttcctcagaacgatgatgaccgagtcgcccctgaggaaca 398
Query: 342 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 338
Query: 402 tggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaa 278
Query: 462 aagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgt 521
|||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 277 aagcgcgaacccggccaagtagtttcttgttgttgcggcaattgatgagcacctgggtgt 218
Query: 522 tgttcttaacactcatcattagtactgacagagggcctgtgctaaattcctcttcctctt 581
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 217 tgttcttaacactcatcattaggactgacagagggcctgtgctaaattcctcctcctctt 158
Query: 582 tcttcccagcctcattctcgtccgccatcgcctagcctccgccctccttctccgcgccgg 641
|||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tctttccagcctgattctcatccgccatcgcctagcctccgccctccttctccgcgccgg 98
Query: 642 tggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||||||||| | |||||||||||||
Sbjct: 97 cggcgagtcgctccgggtggtgctggtgcgctccga 62
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 247 cataagctacagttttcaacagagac 272
||||||||||||||||||||||||||
Sbjct: 529 cataagctacagttttcaacagagac 504
>gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 390
Score = 571 bits (288), Expect = e-161
Identities = 321/332 (96%)
Strand = Plus / Minus
Query: 346 gctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtcttggg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtcttggg 331
Query: 406 gacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagc 271
Query: 466 acgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgttgtt 525
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 270 acgaacccggccaagtagcttcttgttgttgcggcaattgatgagcacctgggtgttgtt 211
Query: 526 cttaacactcatcattagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 210 cttaacactcatcattaggactgacagggggcctgtgctaaattcctcctcctctttctt 151
Query: 586 cccagcctcattctcgtccgccatcgcctagcctccgccctccttctccgcgccggtggc 645
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 150 tccagcctgattctcatccgccatcgcctagcctccgccctccttctccgcgccggcggc 91
Query: 646 gagtcgctccgggtggcgttggtgcgctccga 677
|||||||||||||||| | |||||||||||||
Sbjct: 90 gagtcgctccgggtggtgctggtgcgctccga 59
>gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 457
Score = 545 bits (275), Expect = e-153
Identities = 308/319 (96%)
Strand = Plus / Minus
Query: 282 ggttgggcgatcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaaca 341
||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 319 ggttgggcgatcagtttgggttcttcagcacgatgatgaccgagtcacccctgaggaaca 260
Query: 342 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 200
Query: 402 tggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tggggacctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaa 140
Query: 462 aagcacgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctgggtgt 521
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 139 aagcacgaacccggccaagtagcttcttgttgttgcggcaattgatgagcacctgggtgt 80
Query: 522 tgttcttaacactcatcattagtactgacagagggcctgtgctaaattcctcttcctctt 581
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 79 tgttcttaacactcatcattaggactgacagggggcctgtgctaaattcctcctcctctt 20
Query: 582 tcttcccagcctcattctc 600
|||| ||||||| ||||||
Sbjct: 19 tctttccagcctgattctc 1
Score = 87.7 bits (44), Expect = 1e-015
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 199 acatgaacgtcagttcaagataaccagttaatcatccccaacatacatcataagctacag 258
||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||
Sbjct: 436 acatgaacgtcagttcaaggtaaccagttaatcctccagaacata---cataagctacag 380
Query: 259 ttttcaacagagac 272
||||||||||||||
Sbjct: 379 ttttcaacagagac 366
>gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 679
Score = 224 bits (113), Expect = 8e-057
Identities = 125/129 (96%)
Strand = Plus / Plus
Query: 282 ggttgggcgatcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaaca 341
|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 55 ggttgggcaatcagtttgggttcctcagaacgatgatgaccgagtcgcccctgaggaaca 114
Query: 342 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 174
Query: 402 tggggacct 410
|||||||||
Sbjct: 175 tggggacct 183
Score = 186 bits (94), Expect = 2e-045
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcg 335
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctg 516
|||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 336 cgaacccggccaagtagtttcttgttgttgcggcaattgatgagcacctg 385
>gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 629
Score = 224 bits (113), Expect = 8e-057
Identities = 125/129 (96%)
Strand = Plus / Plus
Query: 282 ggttgggcgatcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaaca 341
|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 56 ggttgggcaatcagtttgggttcctcagaacgatgatgaccgagtcgcccctgaggaaca 115
Query: 342 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtct 175
Query: 402 tggggacct 410
|||||||||
Sbjct: 176 tggggacct 184
Score = 186 bits (94), Expect = 2e-045
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcg 336
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctg 516
|||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 337 cgaacccggccaagtagtttcttgttgttgcggcaattgatgagcacctg 386
>gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 680
Score = 208 bits (105), Expect = 5e-052
Identities = 110/112 (98%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 632 gggttcctcagaacgatgatgaccgagtcgcccntgaggaacatcttgctgatgaatcta 573
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacct 410
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacct 521
Score = 186 bits (94), Expect = 2e-045
Identities = 106/110 (96%)
Strand = Plus / Minus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcg 369
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctg 516
|||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 368 cgaacccggccaagtagtttcttgttgttgcggcaattgatgagcacctg 319
>gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 738
Score = 204 bits (103), Expect = 8e-051
Identities = 125/130 (96%), Gaps = 2/130 (1%)
Strand = Plus / Minus
Query: 282 ggttgggcgatcacttggggtt-cctcagcacgatgatgaccgagtcgcccctgaggaac 340
|||||||| |||| |||||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct: 647 ggttgggc-atcagttggggtttcctcagaacgatgatgaccgagtcgcccntgaggaac 589
Query: 341 atcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccagtc 529
Query: 401 ttggggacct 410
||||||||||
Sbjct: 528 ttggggacct 519
Score = 186 bits (94), Expect = 2e-045
Identities = 106/110 (96%)
Strand = Plus / Minus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcg 367
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctg 516
|||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 366 cgaacccggccaagtagtttcttgttgttgcggcaattgatgagcacctg 317
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 247 cataagctacagttttcaacagagac 272
||||||||||||||||||||||||||
Sbjct: 719 cataagctacagttttcaacagagac 694
>gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 196 bits (99), Expect = 2e-048
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 381 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 322
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|| |||||||| || ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct: 321 tctttgttcaccggaagagccttcttcttgcctttaccggtctttggtacctcagtccac 262
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || |||||||| |||||||| || || |||||||| || | || || |||
Sbjct: 261 atctccctaacattctcgagaaccatgttgcaatgccgatcaaaggctctcacgcgacca 202
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
||||||||||||||||| ||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 201 agcagcttcttgttgttccggcagttgataagaacctgagtattgttcttgacgctcatc 142
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct: 141 atgagcactgagagaggaccggtgctgaactcctcttcctccttctt 95
>gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 196 bits (99), Expect = 2e-048
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 361 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 302
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|| |||||||| || ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct: 301 tctttgttcaccggaagagccttcttcttgcctttaccggtctttggtacctcagtccac 242
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || |||||||| |||||||| || || |||||||| || | || || |||
Sbjct: 241 atctccctaacattctcgagaaccatgttgcaatgccgatcaaaggctctcacgcgacca 182
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
||||||||||||||||| ||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 181 agcagcttcttgttgttccggcagttgataagaacctgagtattgttcttgacgctcatc 122
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct: 121 atgagcactgagagaggaccggtgctgaactcctcttcctccttctt 75
>gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 3', mRNA sequence
Length = 657
Score = 196 bits (99), Expect = 2e-048
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 322 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 263
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|| |||||||| || ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct: 262 tctttgttcaccggaagagccttcttcttgcctttaccggtctttggtacctcagtccac 203
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || |||||||| |||||||| || || |||||||| || | || || |||
Sbjct: 202 atctccctaacattctcgagaaccatgttgcaatgccgatcaaaggctctcacgcgacca 143
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
||||||||||||||||| ||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 142 agcagcttcttgttgttccggcagttgataagaacctgagtattgttcttgacgctcatc 83
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct: 82 atgagcactgagagaggaccggtgctgaactcctcttcctccttctt 36
>gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 5', mRNA sequence
Length = 664
Score = 196 bits (99), Expect = 2e-048
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 417 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 358
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|| |||||||| || ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct: 357 tctttgttcaccggaagagccttcttcttgcctttaccggtctttggtacctcagtccac 298
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || |||||||| |||||||| || || |||||||| || | || || |||
Sbjct: 297 atctccctaacattctcgagaaccatgttgcaatgccgatcaaaggctctcacgcgacca 238
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
||||||||||||||||| ||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 237 agcagcttcttgttgttccggcagttgataagaacctgagtattgttcttgacgctcatc 178
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct: 177 atgagcactgagagaggaccggtgctgaactcctcttcctccttctt 131
>gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_19_H12_A007 5', mRNA sequence
Length = 569
Score = 196 bits (99), Expect = 2e-048
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 408 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 349
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|| |||||||| || ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct: 348 tctttgttcaccggaagagccttcttcttgcctttaccggtctttggtacctcagtccac 289
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || |||||||| |||||||| || || |||||||| || | || || |||
Sbjct: 288 atctccctaacattctcgagaaccatgttgcaatgccgatcaaaggctctcacgcgacca 229
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
||||||||||||||||| ||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 228 agcagcttcttgttgttccggcagttgataagaacctgagtattgttcttgacgctcatc 169
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct: 168 atgagcactgagagaggaccggtgctgaactcctcttcctccttctt 122
>gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 3', mRNA sequence
Length = 600
Score = 196 bits (99), Expect = 2e-048
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 348 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 289
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|| |||||||| || ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct: 288 tctttgttcaccggaagagccttcttcttgcctttaccggtctttggtacctcagtccac 229
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || |||||||| |||||||| || || |||||||| || | || || |||
Sbjct: 228 atctccctaacattctcgagaaccatgttgcaatgccgatcaaaggctctcacgcgacca 169
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
||||||||||||||||| ||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 168 agcagcttcttgttgttccggcagttgataagaacctgagtattgttcttgacgctcatc 109
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct: 108 atgagcactgagagaggaccggtgctgaactcctcttcctccttctt 62
>gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 5', mRNA sequence
Length = 661
Score = 196 bits (99), Expect = 2e-048
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 392 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 333
Query: 359 tccttgttcacaggcagagccttctttttgcccttgccagtcttggggacctctgtccac 418
|| |||||||| || ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct: 332 tctttgttcaccggaagagccttcttcttgcctttaccggtctttggtacctcagtccac 273
Query: 419 atctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcacgaacccggcca 478
||||||| || |||||||| |||||||| || || |||||||| || | || || |||
Sbjct: 272 atctccctaacattctcgagaaccatgttgcaatgccgatcaaaggctctcacgcgacca 213
Query: 479 agcagcttcttgttgttgcggcaattgatgagaacctgggtgttgttcttaacactcatc 538
||||||||||||||||| ||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 212 agcagcttcttgttgttccggcagttgataagaacctgagtattgttcttgacgctcatc 153
Query: 539 attagtactgacagagggcctgtgctaaattcctcttcctctttctt 585
|| || ||||| ||||| || ||||| || ||||||||||| |||||
Sbjct: 152 atgagcactgagagaggaccggtgctgaactcctcttcctccttctt 106
>gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431932, DNA
sequence
Length = 758
Score = 188 bits (95), Expect = 5e-046
Identities = 123/130 (94%), Gaps = 2/130 (1%)
Strand = Plus / Minus
Query: 282 ggttgggcgatcacttggggttcctcagcacgatgatgaccgagtcgcccctgaggaaca 341
|||||||| |||| || ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 528 ggttgggcaatcagtttgggttcctcagaacgatgatgaccgagtcgcccntgaggaaca 469
Query: 342 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgcccttgccag-tc 400
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 468 tcttgctgatgaatctatccttgttcacaggcagagccttctttttgccc-tgccagatc 410
Query: 401 ttggggacct 410
||||||||||
Sbjct: 409 ttggggacct 400
Score = 186 bits (94), Expect = 2e-045
Identities = 106/110 (96%)
Strand = Plus / Minus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcg 248
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacctg 516
|||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 247 cgaacccggccaagtagtttcttgttgttgcggcaattgatgagcacctg 198
Score = 89.7 bits (45), Expect = 3e-016
Identities = 68/75 (90%), Gaps = 3/75 (4%)
Strand = Plus / Minus
Query: 198 cacatgaacgtcagttcaagataaccagttaatcatccccaacatacatcataagctaca 257
|||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||
Sbjct: 646 cacatgaacgtcagttcaaggtaaccagttaatcctccaaaacata---cataagctaca 590
Query: 258 gttttcaacagagac 272
|||||||||||||||
Sbjct: 589 gttttcaacagagac 575
Score = 81.8 bits (41), Expect = 8e-014
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 86 aataagcagaagtgcaaactcaacattcagggatcaaa-taccgcaggtggtaggttcat 144
|||||||| |||||||| ||||||||||| ||||||| ||| ||||| ||||||| |||
Sbjct: 732 aataagcacaagtgcaagctcaacattcaaagatcaaaatactgcaggaggtaggtacat 673
Query: 145 actccggttaacaaact 161
|||||||||||||||||
Sbjct: 672 actccggttaacaaact 656
>gb|CW083473.1|CW083473 104_425_10944264_116_32355_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 609
Score = 139 bits (70), Expect = 4e-031
Identities = 79/82 (96%)
Strand = Plus / Minus
Query: 512 acctgggtgttgttcttaacactcatcattagtactgacagagggcctgtgctaaattcc 571
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 240 acctgggtgttgttcttaacactcatcattaggactgacagagggcctgtgctaaattcc 181
Query: 572 tcttcctctttcttcccagcct 593
|| ||||||||||| |||||||
Sbjct: 180 tcctcctctttctttccagcct 159
>gb|CW022583.1|CW022583 104_162_10431932_1_30008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431932, DNA
sequence
Length = 694
Score = 81.8 bits (41), Expect = 8e-014
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 86 aataagcagaagtgcaaactcaacattcagggatcaaa-taccgcaggtggtaggttcat 144
|||||||| |||||||| ||||||||||| ||||||| ||| ||||| ||||||| |||
Sbjct: 598 aataagcacaagtgcaagctcaacattcaaagatcaaaatactgcaggaggtaggtacat 657
Query: 145 actccggttaacaaact 161
|||||||||||||||||
Sbjct: 658 actccggttaacaaact 674
>gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011572, DNA
sequence
Length = 705
Score = 81.8 bits (41), Expect = 8e-014
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 407 acctctgtccacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagca 466
||||| ||||||||||||| || |||||||| |||||||| || || |||||||| ||
Sbjct: 394 acctcagtccacatctccctaacattctcgagaaccatgttgcaatgccgatcaaaggct 335
Query: 467 cgaacccggccaagcagcttcttgttgttgcggcaattgatgagaacct 515
| || || |||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 334 ctcacgcgaccaagcagcttcttgttgttccggcagttgataagaacct 286
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 299 gggttcctcagcacgatgatgaccgagtcgcccctgaggaacatcttgctgatgaatcta 358
|||||||| || || ||||||||||| || || | ||||||||||||||| ||||| |||
Sbjct: 593 gggttcctgagaacaatgatgaccgaatccccacggaggaacatcttgcttatgaaccta 534
Query: 359 tccttgttcacaggcagagccttctttttgcc 390
|| |||||||| || ||||||||||| |||||
Sbjct: 533 tctttgttcaccggaagagccttcttcttgcc 502
>gb|CW246896.1|CW246896 104_707_11221527_116_35084_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 710
Score = 81.8 bits (41), Expect = 8e-014
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 86 aataagcagaagtgcaaactcaacattcagggatcaaa-taccgcaggtggtaggttcat 144
|||||||| |||||||| ||||||||||| ||||||| ||| ||||| ||||||| |||
Sbjct: 487 aataagcacaagtgcaagctcaacattcaaagatcaaaatactgcaggaggtaggtacat 546
Query: 145 actccggttaacaaact 161
|||||||||||||||||
Sbjct: 547 actccggttaacaaact 563
Score = 73.8 bits (37), Expect = 2e-011
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 198 cacatgaacgtcagttcaagataaccagttaatcatccccaacatacatcataagctaca 257
|||||||||||||||||||| ||||||||||||| | |||||| |||||||||||
Sbjct: 573 cacatgaacgtcagttcaaggtaaccagttaatccctcaaaacata---cataagctaca 629
Query: 258 gttttcaacagagac 272
|||||||||||||||
Sbjct: 630 gttttcaacagagac 644
>gb|CL164331.1|CL164331 104_358_10807835_114_31814_203 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807835, DNA
sequence
Length = 752
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 627 ccttctccgcgccggtggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 653 ccttctccgcgccggcggcgagtcgctccgggtggtgctggtgcgctccga 703
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 594 cattctcgtccgccatcgcctagcctccgccctcct 629
||||||| ||||||||||||||||||||||||||||
Sbjct: 387 cattctcatccgccatcgcctagcctccgccctcct 422
>gb|CL164332.1|CL164332 104_358_10807835_116_31815_203 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807835, DNA
sequence
Length = 541
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 627 ccttctccgcgccggtggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 456 ccttctccgcgccggcggcgagtcgctccgggtggtgctggtgcgctccga 406
>gb|CW046125.1|CW046125 104_283_10509983_114_30137 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509983, DNA
sequence
Length = 675
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 627 ccttctccgcgccggtggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 305 ccttctccgcgccggcggcgagtcgctccgggtggtgctggtgcgctccga 355
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 594 cattctcgtccgccatcgcctagcctccgccctcct 629
||||||| ||||||||||||||||||||||||||||
Sbjct: 39 cattctcatccgccatcgcctagcctccgccctcct 74
>gb|CW460476.1|CW460476 fsbb001f207l02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207l02, DNA
sequence
Length = 533
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 627 ccttctccgcgccggtggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 330 ccttctccgcgccggcggcgagtcgctccgggtggtgctggtgcgctccga 280
>gb|CW296834.1|CW296834 104_778_11461725_116_35630_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461725, DNA
sequence
Length = 590
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 629 ttctccgcgccggtggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 588 ttctccgcgccggcggcgagtcgctccgggtggtgctggtgcgctccga 540
>gb|CW296835.1|CW296835 104_778_11461725_148_35634_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461725, DNA
sequence
Length = 534
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 629 ttctccgcgccggtggcgagtcgctccgggtggcgttggtgcgctccga 677
||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 1 ttctccgcgccggcggcgagtcgctccgggtggtgctggtgcgctccga 49
>gb|CW460475.1|CW460475 fsbb001f207l02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207l02, DNA
sequence
Length = 688
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 594 cattctcgtccgccatcgcctagcctccgccctcct 629
||||||| ||||||||||||||||||||||||||||
Sbjct: 410 cattctcatccgccatcgcctagcctccgccctcct 445
>gb|CW355943.1|CW355943 fsbb001f020m20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020m20, DNA
sequence
Length = 331
Score = 46.1 bits (23), Expect = 0.004
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 523 gttcttaacactcatcattagtactgacagagggcctgtgctaaattcctcttcctcttt 582
|||||| || |||||||| || ||||| ||||| || ||||| || ||||||||||| ||
Sbjct: 1 gttcttgacgctcatcatgagcactgagagaggaccggtgctgaactcctcttcctcctt 60
Query: 583 ctt 585
|||
Sbjct: 61 ctt 63
>gb|CW046126.1|CW046126 104_283_10509983_115_30138 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509983, DNA
sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.26
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 650 cgctccgggtggcgttggtgcgctccga 677
|||||||||||| | |||||||||||||
Sbjct: 594 cgctccgggtggtgctggtgcgctccga 567
>gb|CW161652.1|CW161652 104_568_11150526_148_36435_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150526, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.26
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 416 cacatctcccgcacgttctcgagcaccatgttacagtggcgatcaaaagcac 467
|||||||||| ||||||||||| | |||||| || || |||||||| ||||
Sbjct: 233 cacatctccctaacgttctcgagaaacatgttgcaatgccgatcaaaggcac 182
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,082
Number of Sequences: 832831
Number of extensions: 171082
Number of successful extensions: 47420
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47351
Number of HSP's gapped (non-prelim): 62
length of query: 687
length of database: 491,359,669
effective HSP length: 19
effective length of query: 668
effective length of database: 475,535,880
effective search space: 317657967840
effective search space used: 317657967840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)