BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkali... 375 e-102
gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkal... 375 e-102
gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorgh... 264 9e-069
gb|CW120731.1|CW120731 104_498_11109499_116_34651_076 Sorgh... 139 3e-031
gb|CW120732.1|CW120732 104_498_11109499_148_34655_076 Sorgh... 139 3e-031
gb|CW121998.1|CW121998 104_500_11110302_116_34668_025 Sorgh... 139 3e-031
gb|CW320107.1|CW320107 104_813_11474839_116_35898_032 Sorgh... 139 3e-031
gb|BM330954.1|BM330954 PIC1_67_F03.g1_A002 Pathogen-infecte... 80 3e-013
gb|BZ780254.1|BZ780254 ii38c12.g1 WGS-SbicolorF (DH5a methy... 64 2e-008
gb|CL701845.2|CL701845 SP__Ba0078E02.f SP__Ba Sorghum propi... 50 2e-004
gb|CW032378.1|CW032378 104_261_10501343_115_30364 Sorghum m... 48 0.001
>gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_3_B09_A002 3', mRNA sequence
Length = 695
Score = 375 bits (189), Expect = e-102
Identities = 297/333 (89%)
Strand = Plus / Minus
Query: 267 tcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctat 326
||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 570 tcaattcaggatgccaaatgctttgtaggattcaacactttcgcggagggtctcctctat 511
Query: 327 aggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagttgacatc 386
|||| ||||| ||||||| |||||||| ||||||||||| ||||||| |||||| ||||
Sbjct: 510 aggcctgaaggtccaccctagcttctgaagtttctcagaactgtatatggagttgtcatc 451
Query: 387 atcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttat 446
||||||||| ||||||||||||||||||| |||||| || ||||| | |||||||||
Sbjct: 450 catttccacaaagtttttgggataagggtaagttggatataaagtctttaatatgtttat 391
Query: 447 catatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggctt 506
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 390 catatcagaaacttttattggttgtgagctgcagatgtatcgtccagacgcttctggttt 331
Query: 507 ttcgtaagccagaagaagagcgtcagcaacatcacgaacatccaccatatttctgagtat 566
||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct: 330 ttcatatgccagaagaagagcatcagcaacatcacgaacatccacaatatttctgagtct 271
Query: 567 gttttcaacagtctcgcgatctcctgtgaaata 599
||||||| ||||| ||||||||| |||||||
Sbjct: 270 attttcaatggtctcacgatctcctttgaaata 238
>gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_C10_A002 3', mRNA sequence
Length = 800
Score = 375 bits (189), Expect = e-102
Identities = 297/333 (89%)
Strand = Plus / Minus
Query: 267 tcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctat 326
||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 435 tcaattcaggatgccaaatgctttgtaggattcaacactttcgcggagggtctcctctat 376
Query: 327 aggcttgaagctccaccccagcttctgcagtttctcagagctgtatacagagttgacatc 386
|||| ||||| ||||||| |||||||| ||||||||||| ||||||| |||||| ||||
Sbjct: 375 aggcctgaaggtccaccctagcttctgaagtttctcagaactgtatatggagttgtcatc 316
Query: 387 atcttccacaaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttat 446
||||||||| ||||||||||||||||||| |||||| || ||||| | |||||||||
Sbjct: 315 catttccacaaagtttttgggataagggtaagttggatataaagtctttaatatgtttat 256
Query: 447 catatcagcaacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggctt 506
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 255 catatcagaaacttttattggttgtgagctgcagatgtatcgtccagacgcttctggttt 196
Query: 507 ttcgtaagccagaagaagagcgtcagcaacatcacgaacatccaccatatttctgagtat 566
||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct: 195 ttcatatgccagaagaagagcatcagcaacatcacgaacatccacaatatttctgagtct 136
Query: 567 gttttcaacagtctcgcgatctcctgtgaaata 599
||||||| ||||| ||||||||| |||||||
Sbjct: 135 attttcaatggtctcacgatctcctttgaaata 103
>gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474839, DNA
sequence
Length = 722
Score = 264 bits (133), Expect = 9e-069
Identities = 178/193 (92%)
Strand = Plus / Minus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
|||||||||||| |||||| |||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 313 tttttgggataatggtaagttggatataaggtcttcaatatgtttatcatatcagaaact 254
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 253 tttattggatgtgaactgctgatgtatcgtccagacgcttctgagttttcgtaagctaga 194
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 193 agaagagcatcagcaacatcacgaacatccaccatatttctgagtctattttcaacagtc 134
Query: 580 tcgcgatctcctg 592
||| ||| |||||
Sbjct: 133 tcgagatttcctg 121
>gb|CW120731.1|CW120731 104_498_11109499_116_34651_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109499, DNA
sequence
Length = 603
Score = 139 bits (70), Expect = 3e-031
Identities = 136/158 (86%)
Strand = Plus / Minus
Query: 242 agatggaacagtcgtagctggatgttcaattcaggatgccaaatgctttgtaggattcaa 301
||||||||||| | || ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 570 agatggaacagccccagttggatactcaatttaggatgccaaatgctttgtaggattcaa 511
Query: 302 cagtgtcgcggagggattcctctataggcttgaagctccaccccagcttctgcagtttct 361
||||||| |||||| ||||||||||||| ||||| |||| || |||||||||| |||||
Sbjct: 510 cagtgtcacggaggatttcctctataggcctgaaggtccagcctagcttctgcaatttct 451
Query: 362 cagagctgtatacagagttgacatcatcttccacaaaa 399
||| ||| ||||||||| | |||| |||||||||||
Sbjct: 450 tagaactgaatacagagtagtcatccacttccacaaaa 413
>gb|CW120732.1|CW120732 104_498_11109499_148_34655_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109499, DNA
sequence
Length = 603
Score = 139 bits (70), Expect = 3e-031
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 242 agatggaacagtcgtagctggatgttcaattcaggatgccaaatgctttgtaggattcaa 301
||||||||||| | || ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 423 agatggaacagccccagttggatactcaatttaggatgccaaatgctttgtaggattcaa 482
Query: 302 cagtgtcgcggagggattcctctataggcttgaagctccaccccagcttctgcagtttct 361
||||||| |||||| ||||||||||||| ||||| |||| || |||||||||| |||||
Sbjct: 483 cagtgtcacggaggatttcctctataggcctgaaggtccagcctagcttctgcaatttct 542
Query: 362 cagagctgtatacagagttgacatcatcttccacaaaa 399
||| ||| ||||||||| | |||| |||||||||||
Sbjct: 543 tagaactgaatacagagtagtcatccacttccacaaaa 580
>gb|CW121998.1|CW121998 104_500_11110302_116_34668_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110302, DNA
sequence
Length = 657
Score = 139 bits (70), Expect = 3e-031
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 623 aggatgccaaatgctttgtaggattcaacagtgtcacggaggatttcctctataggcttg 564
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtatacagagttgacatcatcttcc 393
||| |||| || |||||||||| ||||| ||| ||| ||||||||| | |||| |||||
Sbjct: 563 aaggtccagcctagcttctgcaatttcttagaactgaatacagagtagtcatccacttcc 504
Query: 394 acaaaa 399
||||||
Sbjct: 503 acaaaa 498
Score = 109 bits (55), Expect = 3e-022
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
|||||||||||| |||||| |||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 83 tttttgggataatggtaagttggatataaggtcttcaatatgtttatcatatcagaaact 24
Query: 460 tttattgcatgtgaactgc 478
||||||| |||||||||||
Sbjct: 23 tttattggatgtgaactgc 5
>gb|CW320107.1|CW320107 104_813_11474839_116_35898_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474839, DNA
sequence
Length = 674
Score = 139 bits (70), Expect = 3e-031
Identities = 136/158 (86%)
Strand = Plus / Plus
Query: 242 agatggaacagtcgtagctggatgttcaattcaggatgccaaatgctttgtaggattcaa 301
||||||||||| | || ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 103 agatggaacagccccagttggatactcaatttaggatgccaaatgctttgtaggattcaa 162
Query: 302 cagtgtcgcggagggattcctctataggcttgaagctccaccccagcttctgcagtttct 361
||||||| |||||| ||||||||||||| ||||| |||| || |||||||||| |||||
Sbjct: 163 cagtgtcacggaggatttcctctataggcctgaaggtccagcctagcttctgcaatttct 222
Query: 362 cagagctgtatacagagttgacatcatcttccacaaaa 399
||| ||| ||||||||| | |||| |||||||||||
Sbjct: 223 tagaactgaatacagagtagtcatccacttccacaaaa 260
>gb|BM330954.1|BM330954 PIC1_67_F03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 515
Score = 79.8 bits (40), Expect = 3e-013
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 428 aggtcttcagtatgtttatcatatcagcaacttttattgcatgtgaactgcagatgtatc 487
||||||| ||| |||||| ||||||| ||| ||||||| |||||| ||||| ||| |
Sbjct: 177 aggtctttagtgtgtttacaatatcagagactcttattgctggtgaacagcagaggtacc 118
Query: 488 gtccagacgcttctggcttttcgtaagccagaagaagagcgtcagcaacatcacgaacat 547
||||||| || | || ||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 117 gtccagatgcctgaggattttcgtaagccaacagaagggcgtcagcgacatcacgaacat 58
Query: 548 ccac 551
||||
Sbjct: 57 ccac 54
>gb|BZ780254.1|BZ780254 ii38c12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii38c12, DNA sequence
Length = 515
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 472 gaactgcagatgtatcgtccagacgcttctggcttttcgtaagccagaagaagagcgtca 531
|||| ||||| ||| |||||||| || | || ||||||||||||| ||||| ||||||
Sbjct: 514 gaacagcagaggtaccgtccagatgcctgaggattttcgtaagccaacagaagggcgtca 455
Query: 532 gcaacatcacgaacatccac 551
|| |||||||||||||||||
Sbjct: 454 gcgacatcacgaacatccac 435
>gb|CL701845.2|CL701845 SP__Ba0078E02.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0078E02 5', DNA sequence
Length = 479
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 548 ccaccatatttctgagtatgttttcaacagtctcgcgatctcctg 592
|||| |||||||||||| | ||||||| ||||||||||||||||
Sbjct: 479 ccacaatatttctgagtctattttcaatggtctcgcgatctcctg 435
>gb|CW032378.1|CW032378 104_261_10501343_115_30364 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501343, DNA
sequence
Length = 456
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 520 agaagagcgtcagcaacatcacgaacatccac 551
||||| |||||||| |||||||||||||||||
Sbjct: 454 agaagggcgtcagcgacatcacgaacatccac 423
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,785
Number of Sequences: 832831
Number of extensions: 151785
Number of successful extensions: 41138
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41121
Number of HSP's gapped (non-prelim): 17
length of query: 622
length of database: 491,359,669
effective HSP length: 19
effective length of query: 603
effective length of database: 475,535,880
effective search space: 286748135640
effective search space used: 286748135640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)