BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.1
(1236 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkali... 474 e-131
gb|CN124236.1|CN124236 RHOH1_3_B09.g1_A002 Acid- and alkali... 448 e-124
gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkal... 365 6e-099
gb|CN128033.1|CN128033 RHOH1_26_C10.g1_A002 Acid- and alkal... 347 2e-093
gb|CF758652.1|CF758652 DSAF1_35_A01.g1_A011 Drought-stresse... 278 1e-072
gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorgh... 236 4e-060
gb|CW100055.1|CW100055 104_467_11003894_116_34391_059 Sorgh... 176 3e-042
gb|CW142692.1|CW142692 104_534_11137002_116_34951_077 Sorgh... 167 3e-039
gb|CW142693.1|CW142693 104_534_11137002_148_34947_077 Sorgh... 167 3e-039
gb|CW188144.1|CW188144 104_607_11172866_116_36724_001 Sorgh... 167 3e-039
gb|CW204386.1|CW204386 104_632_11186514_148_36919_073 Sorgh... 167 3e-039
gb|CW255741.1|CW255741 104_720_11226402_116_35131_071 Sorgh... 167 3e-039
gb|CW456886.1|CW456886 fsbb001f202h04k0 Sorghum methylation... 167 3e-039
gb|CW366040.1|CW366040 fsbb001f038n13k0 Sorghum methylation... 163 5e-038
gb|CW183861.1|CW183861 104_599_11164841_116_36675_065 Sorgh... 161 2e-037
gb|BZ366510.1|BZ366510 ic97e06.b1 WGS-SbicolorF (JM107 adap... 153 5e-035
gb|CW120731.1|CW120731 104_498_11109499_116_34651_076 Sorgh... 151 2e-034
gb|CW120732.1|CW120732 104_498_11109499_148_34655_076 Sorgh... 151 2e-034
gb|CW320107.1|CW320107 104_813_11474839_116_35898_032 Sorgh... 151 2e-034
gb|BM324463.1|BM324463 PIC1_31_E07.b1_A002 Pathogen-infecte... 151 2e-034
gb|CW101233.1|CW101233 104_469_11004532_116_34405_016 Sorgh... 147 3e-033
gb|CW121998.1|CW121998 104_500_11110302_116_34668_025 Sorgh... 147 3e-033
gb|CW207036.1|CW207036 104_636_11187903_116_36971_064 Sorgh... 115 1e-023
gb|CL701845.2|CL701845 SP__Ba0078E02.f SP__Ba Sorghum propi... 105 1e-020
gb|CW100056.1|CW100056 104_467_11003894_148_34387_059 Sorgh... 84 4e-014
gb|CL703516.2|CL703516 SP__Bb0002F21.r SP__Bb Sorghum propi... 72 1e-010
gb|BZ349552.1|BZ349552 hr42b05.g1 WGS-SbicolorF (JM107 adap... 70 5e-010
gb|BZ780254.1|BZ780254 ii38c12.g1 WGS-SbicolorF (DH5a methy... 70 5e-010
gb|CW032378.1|CW032378 104_261_10501343_115_30364 Sorghum m... 70 5e-010
gb|CW135383.1|CW135383 104_520_11117821_148_34832_063 Sorgh... 70 5e-010
gb|CW339531.1|CW339531 104_840_11485320_148_36140_092 Sorgh... 70 5e-010
gb|CW339530.1|CW339530 104_840_11485320_116_36141_092 Sorgh... 62 1e-007
gb|BZ366511.1|BZ366511 ic97e06.g1 WGS-SbicolorF (JM107 adap... 60 5e-007
gb|CW139361.1|CW139361 104_529_11135198_116_34905_055 Sorgh... 60 5e-007
gb|CW168295.1|CW168295 104_577_11154068_116_36494_066 Sorgh... 60 5e-007
gb|CW192938.1|CW192938 104_615_11179297_116_36769_005 Sorgh... 60 5e-007
gb|CW403430.1|CW403430 fsbb001f095c10k0 Sorghum methylation... 60 5e-007
gb|BE359158.1|BE359158 DG1_39_C02.b1_A002 Dark Grown 1 (DG1... 60 5e-007
gb|BE363053.1|BE363053 DG1_9_D02.b1_A002 Dark Grown 1 (DG1)... 60 5e-007
gb|CB925013.1|CB925013 ABA1_29_B06.g1_A012 Abscisic acid-tr... 60 5e-007
gb|CD206390.1|CD206390 HS1_22_H01.g1_A012 Heat-shocked seed... 60 5e-007
gb|CD206423.1|CD206423 HS1_22_G03.g1_A012 Heat-shocked seed... 60 5e-007
gb|CD213428.1|CD213428 HS1_40_A07.g1_A012 Heat-shocked seed... 60 5e-007
gb|CF428507.1|CF428507 PH1_15_D07.g1_A002 Phosphorous-defic... 60 5e-007
gb|BG048617.1|BG048617 OV1_14_H08.b1_A002 Ovary 1 (OV1) Sor... 56 8e-006
gb|CW185512.1|CW185512 104_603_11166099_148_36698_012 Sorgh... 52 1e-004
gb|AW923197.1|AW923197 DG1_50_E07.b1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|BE357273.1|BE357273 DG1_148_D02.b1_A002 Dark Grown 1 (DG... 52 1e-004
gb|CW171844.1|CW171844 104_582_11155957_116_36529_051 Sorgh... 48 0.002
gb|CD431095.1|CD431095 ETH1_6_A10.g1_A002 Ethylene-treated ... 48 0.002
gb|CW139362.1|CW139362 104_529_11135198_148_34909_055 Sorgh... 44 0.031
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 44 0.031
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 44 0.031
gb|CL161049.1|CL161049 104_352_10805442_114_31826_114 Sorgh... 42 0.12
gb|CW065681.1|CW065681 104_312_10523281_114_30128 Sorghum m... 42 0.12
gb|CW065682.1|CW065682 104_312_10523281_115_30130 Sorghum m... 42 0.12
gb|CW206175.1|CW206175 104_634_11187455_116_36955_084 Sorgh... 42 0.12
gb|CW206176.1|CW206176 104_634_11187455_148_36956_084 Sorgh... 42 0.12
gb|CW299315.1|CW299315 104_782_11463048_116_36235_092 Sorgh... 42 0.12
gb|CW332609.1|CW332609 104_830_11481507_148_36035_010 Sorgh... 42 0.12
gb|CW494629.1|CW494629 fsbb001f286a06k0 Sorghum methylation... 42 0.12
gb|CD213720.1|CD213720 HS1_52_G04.g1_A012 Heat-shocked seed... 42 0.12
gb|CN125662.1|CN125662 RHOH1_12_B03.g1_A002 Acid- and alkal... 42 0.12
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.12
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.12
gb|BZ367896.1|BZ367896 id07b12.b1 WGS-SbicolorF (JM107 adap... 40 0.48
gb|BZ367897.1|BZ367897 id07b12.g1 WGS-SbicolorF (JM107 adap... 40 0.48
gb|CL158533.1|CL158533 104_347_10803605_114_31377_197 Sorgh... 40 0.48
gb|CL183456.1|CL183456 104_396_10898188_114_31923_028 Sorgh... 40 0.48
gb|CL183457.1|CL183457 104_396_10898188_116_31924_028 Sorgh... 40 0.48
gb|CW031414.1|CW031414 104_260_10500796_114_30365 Sorghum m... 40 0.48
gb|CW065145.1|CW065145 104_311_10522975_115_30121 Sorghum m... 40 0.48
gb|CW122678.1|CW122678 104_501_11110803_148_34673_004 Sorgh... 40 0.48
gb|CW166624.1|CW166624 104_575_11153153_148_36762_071 Sorgh... 40 0.48
gb|CW183574.1|CW183574 104_599_11164688_116_36678_024 Sorgh... 40 0.48
gb|CW183575.1|CW183575 104_599_11164688_148_36677_024 Sorgh... 40 0.48
gb|CW247119.1|CW247119 104_708_11221624_116_36078_064 Sorgh... 40 0.48
gb|CW247120.1|CW247120 104_708_11221624_148_36079_064 Sorgh... 40 0.48
gb|CW260704.1|CW260704 104_727_11229109_116_35197_055 Sorgh... 40 0.48
gb|CW260705.1|CW260705 104_727_11229109_148_35201_055 Sorgh... 40 0.48
gb|CW269378.1|CW269378 104_740_11401813_116_36229_055 Sorgh... 40 0.48
gb|CW269379.1|CW269379 104_740_11401813_148_36230_055 Sorgh... 40 0.48
gb|CW270902.1|CW270902 104_742_11402697_148_35334_033 Sorgh... 40 0.48
gb|CW298129.1|CW298129 104_780_11462416_116_35647_054 Sorgh... 40 0.48
gb|CW302637.1|CW302637 104_786_11464823_116_35662_082 Sorgh... 40 0.48
gb|CW305139.1|CW305139 104_790_11466160_116_37435_058 Sorgh... 40 0.48
gb|CW305140.1|CW305140 104_790_11466160_148_37436_058 Sorgh... 40 0.48
gb|CW317381.1|CW317381 104_809_11473385_116_35861_077 Sorgh... 40 0.48
gb|CW329395.1|CW329395 104_825_11479823_116_35999_082 Sorgh... 40 0.48
gb|CW357876.1|CW357876 fsbb001f024l14k0 Sorghum methylation... 40 0.48
gb|CW390378.1|CW390378 fsbb001f076a05f0 Sorghum methylation... 40 0.48
gb|CW408711.1|CW408711 fsbb001f102l13k0 Sorghum methylation... 40 0.48
gb|CW482650.1|CW482650 fsbb001f242n16f0 Sorghum methylation... 40 0.48
gb|CW482651.1|CW482651 fsbb001f242n16k0 Sorghum methylation... 40 0.48
gb|BG240109.1|BG240109 OV1_18_A05.b1_A002 Ovary 1 (OV1) Sor... 40 0.48
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.48
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.48
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.48
>gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_3_B09_A002 3', mRNA sequence
Length = 695
Score = 474 bits (239), Expect = e-131
Identities = 472/549 (85%), Gaps = 3/549 (0%)
Strand = Plus / Plus
Query: 482 tttgatgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtattta 541
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 37 tttgatgaagactgttggtcagatgaggattactgcaggaagaatgaggattggtattac 96
Query: 542 gtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggac 601
|||||||||| ||||| ||||| || ||| |||||| |||||||||||| ||| ||||
Sbjct: 97 ctttccaaaactctgtccgaacgtgaggcttttgcttatgcagcaaaaacggggttggat 156
Query: 602 gttgtaactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttg 661
||||||||| |||| ||| | || ||||||||||||||||||||| ||| | ||||| |
Sbjct: 157 gttgtaactatttgcccggccttggtatttggacccttgatgcagtctatattaaatgcg 216
Query: 662 agcagcgaaatgatccttaaatatttcaaag---atctcgagactgttgaaaatgtactc 718
|| || |||| ||||||| |||||||||| ||| ||||| |||||||| ||||
Sbjct: 217 agtagtaaaatactccttaactatttcaaaggagatcgtgagaccattgaaaatagactc 276
Query: 719 agtaatatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagcca 778
|| ||||| |||||| ||||||||||||||||||||||||||||| | || ||||| |||
Sbjct: 277 agaaatattgtggatgttcgtgatgttgctgatgctcttcttctggcatatgaaaaacca 336
Query: 779 gaagcgtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaac 838
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 337 gaagcgtctggacgatacatctgcagctcacaaccaataaaagtttctgatatgataaac 396
Query: 839 atactgaagaccatgtatccgtcttacccttatcccaaaaattttgtggaagatgatgtc 898
||| | ||||| | ||||| ||||||||||||||||||| ||||||||| |||| |
Sbjct: 397 atattaaagactttatatccaacttacccttatcccaaaaactttgtggaaatggatgac 456
Query: 899 aactctgtatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagag 958
||||| ||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 457 aactccatatacagttctgagaaacttcagaagctagggtggaccttcaggcctatagag 516
Query: 959 gaatccctccgtgacactgttgaatcctacaaggcatttggcatcctgaattgaacatcc 1018
|| ||||||| || | ||||||||||||||| ||||||||||||||||||||| | |||
Sbjct: 517 gagaccctccgcgaaagtgttgaatcctacaaagcatttggcatcctgaattgagcgtcc 576
Query: 1019 aactaggac 1027
|||| ||||
Sbjct: 577 aactgggac 585
>gb|CN124236.1|CN124236 RHOH1_3_B09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_3_B09_A002 5', mRNA sequence
Length = 566
Score = 448 bits (226), Expect = e-124
Identities = 335/370 (90%), Gaps = 1/370 (0%)
Strand = Plus / Plus
Query: 67 gaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcct 126
||||||||| |||||||||||||| ||||||||| |||||||| ||| |||||||||||
Sbjct: 114 gaagagcgtatgcgtgaccggcgcgggcggcttcatcgcgtcgtggctcgtgaagctcct 173
Query: 127 cctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaa 186
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cctctcccgtggccaatacacggtccgcggcaccgtgcgcgaccctggtgctagcaagaa 233
Query: 187 tgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatct 246
||| |||||||||| ||||||||||||| |||||||||||||||||| |||| |||| |
Sbjct: 234 tgctcatctcaaggcgctggaaggagctatggaaaggttgcagcttcttaaggttgattt 293
Query: 247 gatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagc 306
| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 294 gttggactacagcagtgttgcatcagcaattgccggctgtgagggtgtcttccatgtagc 353
Query: 307 tagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgt 366
||| ||||| | |||| ||| ||||||||||||||||||||||||||| ||| |||||
Sbjct: 354 tagtcctgttccttccggtcggtcctccaaccctgaggtggaggtcataggtcctgctgt 413
Query: 367 aacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagtt-gtgg 425
| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 414 attaggaacaaccaatgtgttaaaggcttgctatgaggcaaaagttaagcgagttggtgg 473
Query: 426 tggtgtcttc 435
||||||||||
Sbjct: 474 tggtgtcttc 483
Score = 65.9 bits (33), Expect = 8e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 482 tttgatgaagactgctggtcagatgaggattactgca 518
|||||||||||||| ||||||||||||||||||||||
Sbjct: 530 tttgatgaagactgttggtcagatgaggattactgca 566
>gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_26_C10_A002 3', mRNA sequence
Length = 800
Score = 365 bits (184), Expect = 6e-099
Identities = 384/450 (85%), Gaps = 3/450 (0%)
Strand = Plus / Plus
Query: 581 gcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttg 640
||||||||||| ||| |||| ||||||||| |||| ||| | || |||||||||||||||
Sbjct: 1 gcagcaaaaacggggttggatgttgtaactatttgcccggccttggtatttggacccttg 60
Query: 641 atgcagcctacagtaaatttgagcagcgaaatgatccttaaatatttcaaag---atctc 697
|||||| ||| | ||||| ||| || |||| ||||||| |||||||||| |||
Sbjct: 61 atgcagtctatattaaatgcgagtagtaaaatactccttaactatttcaaaggagatcgt 120
Query: 698 gagactgttgaaaatgtactcagtaatatggtggatattcgtgatgttgctgatgctctt 757
||||| |||||||| |||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 121 gagaccattgaaaatagactcagaaatattgtggatgttcgtgatgttgctgatgctctt 180
Query: 758 cttctgacttacgaaaagccagaagcgtctggacgatacatctgcagttcacatgcaata 817
|||||| | || ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 181 cttctggcatatgaaaaaccagaagcgtctggacgatacatctgcagctcacaaccaata 240
Query: 818 aaaatttctgatatgataaacatactgaagaccatgtatccgtcttacccttatcccaaa 877
||| |||||||||||||||||||| | ||||| | ||||| |||||||||||||||||
Sbjct: 241 aaagtttctgatatgataaacatattaaagactttatatccaacttacccttatcccaaa 300
Query: 878 aattttgtggaagatgatgtcaactctgtatacagctctgagaaactgcagaagctgggg 937
|| ||||||||| |||| |||||| ||||||| ||||||||||| |||||||| |||
Sbjct: 301 aactttgtggaaatggatgacaactccatatacagttctgagaaacttcagaagctaggg 360
Query: 938 tggaccttcaagcctatagaggaatccctccgtgacactgttgaatcctacaaggcattt 997
|||||||||| |||||||||||| ||||||| || | ||||||||||||||| ||||||
Sbjct: 361 tggaccttcaggcctatagaggagaccctccgcgaaagtgttgaatcctacaaagcattt 420
Query: 998 ggcatcctgaattgaacatccaactaggac 1027
||||||||||||||| | ||||||| ||||
Sbjct: 421 ggcatcctgaattgagcgtccaactgggac 450
>gb|CN128033.1|CN128033 RHOH1_26_C10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_C10_A002 5', mRNA sequence
Length = 297
Score = 347 bits (175), Expect = 2e-093
Identities = 259/287 (90%)
Strand = Plus / Plus
Query: 67 gaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcct 126
||||||||| |||||||||||||| ||||||||| |||||||| ||| |||||||||||
Sbjct: 11 gaagagcgtatgcgtgaccggcgcgggcggcttcatcgcgtcgtggctcgtgaagctcct 70
Query: 127 cctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaa 186
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 cctctcccgtggccaatacacggtccgcggcaccgtgcgcgaccctggtgctagcaagaa 130
Query: 187 tgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatct 246
||| |||||||||| ||||||||||||| |||||||||||||||||| |||| |||| |
Sbjct: 131 tgctcatctcaaggcgctggaaggagctatggaaaggttgcagcttcttaaggttgattt 190
Query: 247 gatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagc 306
| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 191 gttggactacagcagtgttgcatcagcaattgccggctgtgagggtgtcttccatgtagc 250
Query: 307 tagccctgtcctttcccatcgaccctccaaccctgaggtggaggtca 353
||| ||||| | |||| ||| ||||||||||||||||||||||||
Sbjct: 251 tagtcctgttccttccggtcggtcctccaaccctgaggtggaggtca 297
>gb|CF758652.1|CF758652 DSAF1_35_A01.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_35_A01_A011 3', mRNA sequence
Length = 463
Score = 278 bits (140), Expect = 1e-072
Identities = 215/240 (89%)
Strand = Plus / Plus
Query: 196 caaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggacta 255
||||| ||||||||||||| |||||||||||||||||| |||| |||| || |||||||
Sbjct: 1 caaggcgctggaaggagctatggaaaggttgcagcttcttaaggttgatttgttggacta 60
Query: 256 cgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccctgt 315
| ||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 cagcagtgttgcatcagcaattgccggctgtgagggtgtcttccatgtagctagtcctgt 120
Query: 316 cctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggtac 375
| |||| ||| ||||||||||||||||||||||||||| ||| |||||| ||| ||
Sbjct: 121 tccttccggtcggtcctccaaccctgaggtggaggtcataggtcctgctgtattaggaac 180
Query: 376 aaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 aaccaatgtgttaaaggcttgctatgaggcaaaagttaagcgagttgtggtggtgtcttc 240
Score = 81.8 bits (41), Expect = 1e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 482 tttgatgaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 287 tttgatgaagactgttggtcagatgaggattactgcaggaagaatgagg 335
>gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474839, DNA
sequence
Length = 722
Score = 236 bits (119), Expect = 4e-060
Identities = 170/187 (90%)
Strand = Plus / Plus
Query: 693 atctcgagactgttgaaaatgtactcagtaatatggtggatattcgtgatgttgctgatg 752
|||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||
Sbjct: 127 atctcgagactgttgaaaatagactcagaaatatggtggatgttcgtgatgttgctgatg 186
Query: 753 ctcttcttctgacttacgaaaagccagaagcgtctggacgatacatctgcagttcacatg 812
|||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 187 ctcttcttctagcttacgaaaactcagaagcgtctggacgatacatcagcagttcacatc 246
Query: 813 caataaaaatttctgatatgataaacatactgaagaccatgtatccgtcttacccttatc 872
|||||||| |||||||||||||||||||| |||||||| | ||||| |||||| |||||
Sbjct: 247 caataaaagtttctgatatgataaacatattgaagaccttatatccaacttaccattatc 306
Query: 873 ccaaaaa 879
|||||||
Sbjct: 307 ccaaaaa 313
>gb|CW100055.1|CW100055 104_467_11003894_116_34391_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003894, DNA
sequence
Length = 652
Score = 176 bits (89), Expect = 3e-042
Identities = 146/165 (88%)
Strand = Plus / Minus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
||||||||||||| |||||||||||||| ||||||| | ||| |||||| ||||||||
Sbjct: 396 aggattggtatttcctttccaaaacactggcggaacgtggggcttttgcttatgcagcaa 337
Query: 588 aaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagc 647
|||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 336 aaacagggttggacgttgtaactatttgtccgtcatatgtatttggacccttgatgcagc 277
Query: 648 ctacagtaaatttgagcagcgaaatgatccttaaatatttcaaag 692
||| |||||||| |||||| || | |||||||| ||||||||||
Sbjct: 276 ctatagtaaattcgagcagtaaagtcatccttaattatttcaaag 232
>gb|CW142692.1|CW142692 104_534_11137002_116_34951_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137002, DNA
sequence
Length = 613
Score = 167 bits (84), Expect = 3e-039
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 48 aaacaatggatccggtgcggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgt 107
|||||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 424 aaacaatggaggcggcggggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgt 365
Query: 108 cggagctggtgaagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcg 167
|| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 364 cgtggctggtgaagctcctcctctcccggggccagtacgccgtccgtggcaccgtgcgcg 305
Query: 168 accctggt 175
||||||||
Sbjct: 304 accctggt 297
>gb|CW142693.1|CW142693 104_534_11137002_148_34947_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137002, DNA
sequence
Length = 495
Score = 167 bits (84), Expect = 3e-039
Identities = 117/128 (91%)
Strand = Plus / Plus
Query: 48 aaacaatggatccggtgcggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgt 107
|||||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 347 aaacaatggaggcggcggggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgt 406
Query: 108 cggagctggtgaagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcg 167
|| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 407 cgtggctggtgaagctcctcctctcccggggccagtacgccgtccggggcaccgtgcgcg 466
Query: 168 accctggt 175
||||||||
Sbjct: 467 accctggt 474
>gb|CW188144.1|CW188144 104_607_11172866_116_36724_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172866, DNA
sequence
Length = 636
Score = 167 bits (84), Expect = 3e-039
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 48 aaacaatggatccggtgcggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgt 107
|||||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 371 aaacaatggaggcggcggggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgt 312
Query: 108 cggagctggtgaagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcg 167
|| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 311 cgtggctggtgaagctcctcctctcccggggccagtacgccgtccgtggcaccgtgcgcg 252
Query: 168 accctggt 175
||||||||
Sbjct: 251 accctggt 244
>gb|CW204386.1|CW204386 104_632_11186514_148_36919_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186514, DNA
sequence
Length = 640
Score = 167 bits (84), Expect = 3e-039
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 48 aaacaatggatccggtgcggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgt 107
|||||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 452 aaacaatggaggcggcggggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgt 393
Query: 108 cggagctggtgaagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcg 167
|| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 392 cgtggctggtgaagctcctcctctcccggggccagtacgccgtccgtggcaccgtgcgcg 333
Query: 168 accctggt 175
||||||||
Sbjct: 332 accctggt 325
>gb|CW255741.1|CW255741 104_720_11226402_116_35131_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226402, DNA
sequence
Length = 638
Score = 167 bits (84), Expect = 3e-039
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 48 aaacaatggatccggtgcggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgt 107
|||||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 359 aaacaatggaggcggcggggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgt 300
Query: 108 cggagctggtgaagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcg 167
|| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 299 cgtggctggtgaagctcctcctctcccggggccagtacgccgtccgtggcaccgtgcgcg 240
Query: 168 accctggt 175
||||||||
Sbjct: 239 accctggt 232
>gb|CW456886.1|CW456886 fsbb001f202h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202h04, DNA
sequence
Length = 601
Score = 167 bits (84), Expect = 3e-039
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 48 aaacaatggatccggtgcggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgt 107
|||||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 383 aaacaatggaggcggcggggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgt 324
Query: 108 cggagctggtgaagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcg 167
|| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 323 cgtggctggtgaagctcctcctctcccggggccagtacgccgtccgtggcaccgtgcgcg 264
Query: 168 accctggt 175
||||||||
Sbjct: 263 accctggt 256
>gb|CW366040.1|CW366040 fsbb001f038n13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038n13, DNA
sequence
Length = 648
Score = 163 bits (82), Expect = 5e-038
Identities = 103/110 (93%)
Strand = Plus / Minus
Query: 66 ggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcc 125
||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct: 564 ggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgtcgtggctggtgaagctcc 505
Query: 126 tcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggt 175
|||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 504 tcctctcccggggccagtacgccgtccgtggcaccgtgcgcgaccctggt 455
>gb|CW183861.1|CW183861 104_599_11164841_116_36675_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164841, DNA
sequence
Length = 349
Score = 161 bits (81), Expect = 2e-037
Identities = 118/129 (91%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 48 aaacaatggatccggtgcggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgt 107
|||||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 149 aaacaatggaggcggcggggaagagcgtgtgcgtgaccggcgccggcggcttcatcgcgt 208
Query: 108 cggagctggtgaagctcctcctctcccggggcca-atacgcggtccgcggcaccgtgcgc 166
|| |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 209 cgtggctggtgaagctcctcctctcccggggccagatacgccgtccgtggcaccgtgcgc 268
Query: 167 gaccctggt 175
|||||||||
Sbjct: 269 gaccctggt 277
>gb|BZ366510.1|BZ366510 ic97e06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic97e06 5', DNA sequence
Length = 710
Score = 153 bits (77), Expect = 5e-035
Identities = 101/109 (92%)
Strand = Plus / Minus
Query: 67 gaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcct 126
||||||||| |||||||||||||| ||||||||| |||||||| ||| |||||||||||
Sbjct: 466 gaagagcgtatgcgtgaccggcgcgggcggcttcatcgcgtcgtggctcgtgaagctcct 407
Query: 127 cctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggt 175
||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 406 cctctcccgtggccaatacacggtccgcggcaccgtgcgcgaccctggt 358
>gb|CW120731.1|CW120731 104_498_11109499_116_34651_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109499, DNA
sequence
Length = 603
Score = 151 bits (76), Expect = 2e-034
Identities = 133/152 (87%)
Strand = Plus / Plus
Query: 880 ttttgtggaagatgatgtcaactctgtatacagctctgagaaactgcagaagctggggtg 939
||||||||||| |||| | ||||||||| ||| ||| ||||| |||||||||| || ||
Sbjct: 413 ttttgtggaagtggatgactactctgtattcagttctaagaaattgcagaagctaggctg 472
Query: 940 gaccttcaagcctatagaggaatccctccgtgacactgttgaatcctacaaggcatttgg 999
|||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 473 gaccttcaggcctatagaggaaatcctccgtgacactgttgaatcctacaaagcatttgg 532
Query: 1000 catcctgaattgaacatccaactaggactgtt 1031
|||||| |||||| |||||||| || |||||
Sbjct: 533 catcctaaattgagtatccaactggggctgtt 564
>gb|CW120732.1|CW120732 104_498_11109499_148_34655_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109499, DNA
sequence
Length = 603
Score = 151 bits (76), Expect = 2e-034
Identities = 133/152 (87%)
Strand = Plus / Minus
Query: 880 ttttgtggaagatgatgtcaactctgtatacagctctgagaaactgcagaagctggggtg 939
||||||||||| |||| | ||||||||| ||| ||| ||||| |||||||||| || ||
Sbjct: 580 ttttgtggaagtggatgactactctgtattcagttctaagaaattgcagaagctaggctg 521
Query: 940 gaccttcaagcctatagaggaatccctccgtgacactgttgaatcctacaaggcatttgg 999
|||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 520 gaccttcaggcctatagaggaaatcctccgtgacactgttgaatcctacaaagcatttgg 461
Query: 1000 catcctgaattgaacatccaactaggactgtt 1031
|||||| |||||| |||||||| || |||||
Sbjct: 460 catcctaaattgagtatccaactggggctgtt 429
>gb|CW320107.1|CW320107 104_813_11474839_116_35898_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474839, DNA
sequence
Length = 674
Score = 151 bits (76), Expect = 2e-034
Identities = 133/152 (87%)
Strand = Plus / Minus
Query: 880 ttttgtggaagatgatgtcaactctgtatacagctctgagaaactgcagaagctggggtg 939
||||||||||| |||| | ||||||||| ||| ||| ||||| |||||||||| || ||
Sbjct: 260 ttttgtggaagtggatgactactctgtattcagttctaagaaattgcagaagctaggctg 201
Query: 940 gaccttcaagcctatagaggaatccctccgtgacactgttgaatcctacaaggcatttgg 999
|||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 200 gaccttcaggcctatagaggaaatcctccgtgacactgttgaatcctacaaagcatttgg 141
Query: 1000 catcctgaattgaacatccaactaggactgtt 1031
|||||| |||||| |||||||| || |||||
Sbjct: 140 catcctaaattgagtatccaactggggctgtt 109
>gb|BM324463.1|BM324463 PIC1_31_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 484
Score = 151 bits (76), Expect = 2e-034
Identities = 289/360 (80%)
Strand = Plus / Plus
Query: 77 tgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcccgg 136
|||||||||||||| || |||||| | |||||| ||| || |||||| | ||||||
Sbjct: 98 tgcgtgaccggcgcggggggcttcctggcgtcgtggctcgtcaagctcttgctctccacc 157
Query: 137 ggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccatctc 196
|||| ||||| ||||||||||||||||| || | |||| | ||||||||||||||||
Sbjct: 158 ggccgctacgccgtccgcggcaccgtgcgggatctcggtgatggcaagaatgcccatctt 217
Query: 197 aaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggactac 256
| | || |||| || | || ||||||||| | |||||||||| || ||||||||
Sbjct: 218 atgacactcgaagacgccggcgagaggttgcagttggtcaaggctgacatgctggactac 277
Query: 257 gacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccctgtc 316
| |||| |||| || || || |||||||||||||||||||||||||| || |||||||||
Sbjct: 278 ggcagcgttgcgtccgcggtcgccggctgtgagggtgtcttccatgtcgcgagccctgtc 337
Query: 317 ctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggtaca 376
| ||| || || |||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 338 ccctccggtcaactctccaaccctgaggcagatgtcatagctcctgctgtaactggtaca 397
Query: 377 accaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtcttca 436
|||||||| || |||||| | ||||||||||| | | ||||||| ||||| ||||||
Sbjct: 398 ctgaatgtgttgaaagcttgccacgaggcaaaagtgaagagagttgttgtggtatcttca 457
>gb|CW101233.1|CW101233 104_469_11004532_116_34405_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004532, DNA
sequence
Length = 672
Score = 147 bits (74), Expect = 3e-033
Identities = 98/106 (92%)
Strand = Plus / Plus
Query: 67 gaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcct 126
||||||||| |||||||||||||| ||||||||| |||||||| ||| |||||||||||
Sbjct: 567 gaagagcgtatgcgtgaccggcgcgggcggcttcatcgcgtcgtggctcgtgaagctcct 626
Query: 127 cctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccct 172
||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 627 cctctcccgtggccaatacacggtccgcggcaccgtgcgcgaccct 672
>gb|CW121998.1|CW121998 104_500_11110302_116_34668_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110302, DNA
sequence
Length = 657
Score = 147 bits (74), Expect = 3e-033
Identities = 113/126 (89%)
Strand = Plus / Plus
Query: 880 ttttgtggaagatgatgtcaactctgtatacagctctgagaaactgcagaagctggggtg 939
||||||||||| |||| | ||||||||| ||| ||| ||||| |||||||||| || ||
Sbjct: 498 ttttgtggaagtggatgactactctgtattcagttctaagaaattgcagaagctaggctg 557
Query: 940 gaccttcaagcctatagaggaatccctccgtgacactgttgaatcctacaaggcatttgg 999
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 558 gaccttcaagcctatagaggaaatcctccgtgacactgttgaatcctacaaagcatttgg 617
Query: 1000 catcct 1005
||||||
Sbjct: 618 catcct 623
Score = 93.7 bits (47), Expect = 4e-017
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 801 gcagttcacatgcaataaaaatttctgatatgataaacatactgaagaccatgtatccgt 860
||||||||||| |||||||| |||||||||||||||||||| |||||||| | |||||
Sbjct: 5 gcagttcacatccaataaaagtttctgatatgataaacatattgaagaccttatatccaa 64
Query: 861 cttacccttatcccaaaaa 879
|||||| ||||||||||||
Sbjct: 65 cttaccattatcccaaaaa 83
>gb|CW207036.1|CW207036 104_636_11187903_116_36971_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187903, DNA
sequence
Length = 288
Score = 115 bits (58), Expect = 1e-023
Identities = 119/138 (86%), Gaps = 1/138 (0%)
Strand = Plus / Minus
Query: 173 ggtgctagcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagctt 232
||||||||||||||||| |||||||||| || |||||||||| |||||| ||||||||
Sbjct: 162 ggtgctagcaagaatgctcatctcaaggcgccggaaggagctatggaaagcatgcagctt 103
Query: 233 ctcaaggctgatctgatggactacga-cagcattgcatcagcagttgccggctgtgaggg 291
|| |||| |||| || ||||| |||| ||| ||||||||||| |||||||||| ||||
Sbjct: 102 cttaaggttgatatgttggaccacgagcagtgttgcatcagcaattgccggctgcgagga 43
Query: 292 tgtcttccatgtagctag 309
|||| |||||||||||||
Sbjct: 42 tgtcctccatgtagctag 25
>gb|CL701845.2|CL701845 SP__Ba0078E02.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0078E02 5', DNA sequence
Length = 479
Score = 105 bits (53), Expect = 1e-020
Identities = 137/165 (83%)
Strand = Plus / Plus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
|||||||||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||
Sbjct: 87 aggattggtattacctttccaaaactctgtccgaacgtgaggcttttgcttatgcagcaa 146
Query: 588 aaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagc 647
|||| ||| |||| ||||||||| |||| ||| | || |||||||||||||||||||||
Sbjct: 147 aaacggggttggatgttgtaactatttgcccggccttggtatttggacccttgatgcagt 206
Query: 648 ctacagtaaatttgagcagcgaaatgatccttaaatatttcaaag 692
||| | ||||| ||| || |||| ||||||| ||||||||||
Sbjct: 207 ctatattaaatgcgagtagtaaaatactccttaactatttcaaag 251
>gb|CW100056.1|CW100056 104_467_11003894_148_34387_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003894, DNA
sequence
Length = 611
Score = 83.8 bits (42), Expect = 4e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgcta 399
||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||
Sbjct: 554 aggtggaggtcataggtcctgcttttacaggtacaaccaatgtgttaaaggcttgcta 611
>gb|CL703516.2|CL703516 SP__Bb0002F21.r SP__Bb Sorghum propinquum genomic clone
SP__Bb0002F21 3', DNA sequence
Length = 537
Score = 71.9 bits (36), Expect = 1e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
|||||||||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||
Sbjct: 443 aggattggtattacctttccaaaactctgtccgaacgtgaggcttttgcttatgcagcaa 502
Query: 588 aaacagggctggacgttgtaactgtttg 615
|||| ||| |||| ||||||||| ||||
Sbjct: 503 aaacggggttggatgttgtaactatttg 530
>gb|BZ349552.1|BZ349552 hr42b05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr42b05 5', DNA sequence
Length = 655
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
|||| |||||||| |||| ||||||||| | |||| || ||| |||||| ||||||||
Sbjct: 162 aggaatggtatttcctttctaaaacactggcagaacatgaggcttttgcttatgcagcaa 103
Query: 588 aaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagc 647
|||| ||||| ||| |||||||| |||| || ||||| || ||||||| ||| |||| |
Sbjct: 102 aaactgggctagacattgtaactatttgcccatcattggtgattggacctttgttgcaac 43
Query: 648 ctacagtaaat 658
| |||||||||
Sbjct: 42 ccacagtaaat 32
>gb|BZ780254.1|BZ780254 ii38c12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii38c12, DNA sequence
Length = 515
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
|||| |||||||| |||| ||||||||| | |||| || ||| |||||| ||||||||
Sbjct: 87 aggaatggtatttcctttctaaaacactggcagaacatgaggcttttgcttatgcagcaa 146
Query: 588 aaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagc 647
|||| ||||| ||| |||||||| |||| || ||||| || ||||||| ||| |||| |
Sbjct: 147 aaactgggctagacattgtaactatttgcccatcattggtgattggacctttgttgcaac 206
Query: 648 ctacagtaaat 658
| |||||||||
Sbjct: 207 ccacagtaaat 217
>gb|CW032378.1|CW032378 104_261_10501343_115_30364 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501343, DNA
sequence
Length = 456
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
|||| |||||||| |||| ||||||||| | |||| || ||| |||||| ||||||||
Sbjct: 75 aggaatggtatttcctttctaaaacactggcagaacatgaggcttttgcttatgcagcaa 134
Query: 588 aaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagc 647
|||| ||||| ||| |||||||| |||| || ||||| || ||||||| ||| |||| |
Sbjct: 135 aaactgggctagacattgtaactatttgcccatcattggtgattggacctttgttgcaac 194
Query: 648 ctacagtaaat 658
| |||||||||
Sbjct: 195 ccacagtaaat 205
>gb|CW135383.1|CW135383 104_520_11117821_148_34832_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117821, DNA
sequence
Length = 621
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
|||| |||||||| |||| ||||||||| | |||| || ||| |||||| ||||||||
Sbjct: 215 aggaatggtatttcctttctaaaacactggcagaacatgaggcttttgcttatgcagcaa 156
Query: 588 aaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagc 647
|||| ||||| ||| |||||||| |||| || ||||| || ||||||| ||| |||| |
Sbjct: 155 aaactgggctagacattgtaactatttgcccatcattggtgattggacctttgttgcaac 96
Query: 648 ctacagtaaat 658
| |||||||||
Sbjct: 95 ccacagtaaat 85
>gb|CW339531.1|CW339531 104_840_11485320_148_36140_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485320, DNA
sequence
Length = 625
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 528 aggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaa 587
|||| |||||||| |||| ||||||||| | |||| || ||| |||||| ||||||||
Sbjct: 227 aggaatggtatttcctttctaaaacactggcagaacatgaggcttttgcttatgcagcaa 168
Query: 588 aaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagc 647
|||| ||||| ||| |||||||| |||| || ||||| || ||||||| ||| |||| |
Sbjct: 167 aaactgggctagacattgtaactatttgcccatcattggtgattggacctttgttgcaac 108
Query: 648 ctacagtaaat 658
| |||||||||
Sbjct: 107 ccacagtaaat 97
>gb|CW339530.1|CW339530 104_840_11485320_116_36141_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485320, DNA
sequence
Length = 654
Score = 61.9 bits (31), Expect = 1e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 350 gtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaa 409
||||||||||| |||||||| |||||| |||||||| || |||||| | |||||||||
Sbjct: 83 gtcatagctcctgctgtaactggtacactgaatgtgttgaaagcttgccacgaggcaaaa 142
Query: 410 gttaggcgagttgtggtggtgtcttca 436
|| | | ||||||| ||||| ||||||
Sbjct: 143 gtgaagagagttgttgtggtatcttca 169
>gb|BZ366511.1|BZ366511 ic97e06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic97e06 5', DNA sequence
Length = 731
Score = 60.0 bits (30), Expect = 5e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 67 gaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtc 108
||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 690 gaagagcgtatgcgtgaccggcgcgggcggcttcatcgcgtc 731
>gb|CW139361.1|CW139361 104_529_11135198_116_34905_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135198, DNA
sequence
Length = 617
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 337 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 396
Query: 134 cg 135
||
Sbjct: 397 cg 398
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 574 tcaaggctgatctgctggactacgac 599
>gb|CW168295.1|CW168295 104_577_11154068_116_36494_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154068, DNA
sequence
Length = 649
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 434 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 493
Query: 134 cg 135
||
Sbjct: 494 cg 495
>gb|CW192938.1|CW192938 104_615_11179297_116_36769_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179297, DNA
sequence
Length = 712
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 409 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 350
Query: 134 cg 135
||
Sbjct: 349 cg 348
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 172 tcaaggctgatctgctggactacgac 147
>gb|CW403430.1|CW403430 fsbb001f095c10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095c10, DNA
sequence
Length = 661
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 224 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 283
Query: 134 cg 135
||
Sbjct: 284 cg 285
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 461 tcaaggctgatctgctggactacgac 486
>gb|BE359158.1|BE359158 DG1_39_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 114 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 173
Query: 134 cg 135
||
Sbjct: 174 cg 175
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 271 tcaaggctgatctgctggactacgac 296
>gb|BE363053.1|BE363053 DG1_9_D02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 155 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 214
Query: 134 cg 135
||
Sbjct: 215 cg 216
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 312 tcaaggctgatctgctggactacgac 337
>gb|CB925013.1|CB925013 ABA1_29_B06.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B06_A012 5', mRNA sequence
Length = 642
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 382 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 441
Query: 134 cg 135
||
Sbjct: 442 cg 443
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 539 tcaaggctgatctgctggactacgac 564
>gb|CD206390.1|CD206390 HS1_22_H01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_22_H01_A012 5', mRNA sequence
Length = 592
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 368 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 427
Query: 134 cg 135
||
Sbjct: 428 cg 429
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 525 tcaaggctgatctgctggactacgac 550
>gb|CD206423.1|CD206423 HS1_22_G03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_22_G03_A012 5', mRNA sequence
Length = 511
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 121 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 180
Query: 134 cg 135
||
Sbjct: 181 cg 182
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 278 tcaaggctgatctgctggactacgac 303
>gb|CD213428.1|CD213428 HS1_40_A07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_40_A07_A012 5', mRNA sequence
Length = 595
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 108 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 167
Query: 134 cg 135
||
Sbjct: 168 cg 169
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 265 tcaaggctgatctgctggactacgac 290
>gb|CF428507.1|CF428507 PH1_15_D07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_D07_A002 5', mRNA sequence
Length = 623
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| ||||| ||| |||| ||| ||| ||||||||||| ||||||
Sbjct: 377 gtgtgcgtgaccggcgccggcgggttcatcgcctcgtggctcgtgaagctcctgctctcc 436
Query: 134 cg 135
||
Sbjct: 437 cg 438
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 234 tcaaggctgatctgatggactacgac 259
|||||||||||||| |||||||||||
Sbjct: 534 tcaaggctgatctgctggactacgac 559
>gb|BG048617.1|BG048617 OV1_14_H08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 56.0 bits (28), Expect = 8e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||| ||||| |||||||||||||| ||| ||| ||| ||| ||||||||||
Sbjct: 37 gtgtgcgtgacgggcgccggcggcttcgtcgcctcgtggctcgtgcagcgcctcctctcc 96
>gb|CW185512.1|CW185512 104_603_11166099_148_36698_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166099, DNA
sequence
Length = 751
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||| ||||| ||||||| | |||| ||| ||| || |||||||||||||||
Sbjct: 220 gtgtgcgtgacgggcgccggcggctacatcgcctcgtggctcgtcaagctcctcctctcc 161
Query: 134 cg 135
||
Sbjct: 160 cg 159
>gb|AW923197.1|AW923197 DG1_50_E07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 392
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||| ||||| ||||||| | |||| ||| ||| || |||||||||||||||
Sbjct: 210 gtgtgcgtgacgggcgccggcggctacatcgcctcgtggctcgtcaagctcctcctctcc 269
Query: 134 cg 135
||
Sbjct: 270 cg 271
>gb|BE357273.1|BE357273 DG1_148_D02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||| ||||| ||||||| | |||| ||| ||| || |||||||||||||||
Sbjct: 206 gtgtgcgtgacgggcgccggcggctacatcgcctcgtggctcgtcaagctcctcctctcc 265
Query: 134 cg 135
||
Sbjct: 266 cg 267
>gb|CW171844.1|CW171844 104_582_11155957_116_36529_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155957, DNA
sequence
Length = 699
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
||||||||||| ||||| ||||||||||||||
Sbjct: 564 gtgtgcgtgacgggcgccggcggcttcgtcgc 595
>gb|CD431095.1|CD431095 ETH1_6_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_A10_A002 5', mRNA sequence
Length = 681
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcg 109
||||||||||||||||| ||||||| ||||| ||||
Sbjct: 210 gtgtgcgtgaccggcgccggcggctacgtcgggtcg 245
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 370,087
Number of Sequences: 832831
Number of extensions: 370087
Number of successful extensions: 97771
Number of sequences better than 0.5: 98
Number of HSP's better than 0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97630
Number of HSP's gapped (non-prelim): 136
length of query: 1236
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1216
effective length of database: 474,703,049
effective search space: 577238907584
effective search space used: 577238907584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)