BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.5
(545 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sor... 438 e-121
gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sor... 430 e-119
gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stresse... 424 e-117
gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stresse... 424 e-117
gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1... 422 e-116
gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (L... 398 e-109
gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (L... 398 e-109
gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cD... 398 e-109
gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorgh... 220 1e-055
gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorgh... 220 1e-055
gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorgh... 196 1e-048
gb|CW205319.1|CW205319 104_633_11187006_116_36932_021 Sorgh... 196 1e-048
gb|CW205320.1|CW205320 104_633_11187006_148_36931_021 Sorgh... 196 1e-048
gb|CW393605.1|CW393605 fsbb001f080l22f0 Sorghum methylation... 167 1e-039
gb|AI724128.1|AI724128 RHIZ1_7_B02.y2_A001 Rhizome1 (RHIZ1)... 98 1e-018
gb|CF769744.1|CF769744 DSBF1_3_C07.g1_A010 Drought-stressed... 60 2e-007
gb|CF756080.1|CF756080 DSAF1_3_H08.b1_A011 Drought-stressed... 58 9e-007
gb|CF756152.1|CF756152 DSAF1_3_H08.g1_A011 Drought-stressed... 58 9e-007
gb|CF757474.1|CF757474 DSAF1_18_D03.g1_A011 Drought-stresse... 58 9e-007
gb|CF757918.1|CF757918 DSAF1_25_A04.g1_A011 Drought-stresse... 58 9e-007
gb|CF760293.1|CF760293 DSAF1_58_A02.b1_A011 Drought-stresse... 58 9e-007
gb|CF760343.1|CF760343 DSAF1_58_H09.b1_A011 Drought-stresse... 58 9e-007
gb|CF760865.1|CF760865 DSAF1_67_G04.b1_A011 Drought-stresse... 58 9e-007
gb|CF769495.1|CF769495 DSBF1_2_B11.b1_A010 Drought-stressed... 58 9e-007
gb|CF769581.1|CF769581 DSBF1_2_B11.g1_A010 Drought-stressed... 58 9e-007
gb|CF769668.1|CF769668 DSBF1_3_C07.b1_A010 Drought-stressed... 58 9e-007
gb|CF769669.1|CF769669 DSBF1_3_C08.b1_A010 Drought-stressed... 58 9e-007
gb|CF769745.1|CF769745 DSBF1_3_C08.g1_A010 Drought-stressed... 58 9e-007
gb|CF771805.1|CF771805 DSBF1_24_C11.g1_A010 Drought-stresse... 58 9e-007
>gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 352
Score = 438 bits (221), Expect = e-121
Identities = 283/301 (94%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| ||||| || |||||||||||||||||||||
Sbjct: 351 acagaagtgagaaataagttcacaactaaaactct-agtgatacaagagatgcatttgtc 293
Query: 219 gccacaaactcaatcaccatc-atcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| | |||||||||||| | ||||||||| |||||||||||||
Sbjct: 292 gccacaaactcagccaccacccatcttactcctctgcctcagcctcaccactcttcttgt 233
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 173
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 172 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 113
Query: 398 gcgccgtgtggttcttcgacttggccatccagaatccctctcgctactgctcctagtcac 457
|||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||
Sbjct: 112 gcgccgtgtggttcttcgacttggccattccgaatccctcttgctcctgctcctagtcac 53
Query: 458 c 458
|
Sbjct: 52 c 52
>gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 430 bits (217), Expect = e-119
Identities = 282/301 (93%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| ||||| || |||||||||||||||||||||
Sbjct: 351 acagaagtgagaaataagttcacaactaaaactct-agtgatacaagagatgcatttgtc 293
Query: 219 gccacaaactcaatcaccatc-atcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| | |||||||||||| | ||||||||| |||||||||||||
Sbjct: 292 gccacaaactcagccaccacccatcttactcctctgcctcagcctcaccactcttcttgt 233
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 173
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 172 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 113
Query: 398 gcgccgtgtggttcttcgacttggccatccagaatccctctcgctactgctcctagtcac 457
|| ||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||
Sbjct: 112 gcaccgtgtggttcttcgacttggccattccgaatccctcttgctcctgctcctagtcac 53
Query: 458 c 458
|
Sbjct: 52 c 52
>gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_H03_A011 5', mRNA sequence
Length = 448
Score = 424 bits (214), Expect = e-117
Identities = 303/330 (91%), Gaps = 2/330 (0%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 330 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 272
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | ||||||||| |||||||||||||
Sbjct: 271 gccacaaactcagccaccactcattttactcctctgcctcagcctcaccactcttcttgt 212
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 211 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatccccttggtggagg 152
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 151 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 92
Query: 398 gcgccgtgtggttcttcgacttggccatccagaatccctctcgctactgctcctagtcac 457
|||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||| ||||
Sbjct: 91 gcgccgtgtggttctttgacttggccatcccgaatccctcttgctcctgctcctattcac 32
Query: 458 cagcaacagagcagatcagtggcggcgtga 487
| || | | |||| |||| ||||||||||
Sbjct: 31 cggcgtcggggcaggtcagcggcggcgtga 2
Score = 67.9 bits (34), Expect = 9e-010
Identities = 83/97 (85%), Gaps = 3/97 (3%)
Strand = Plus / Minus
Query: 48 acaagtgatggttttaattaaattccaggtaaccaacaagacataaaata--cacttcgg 105
|||| ||||||||||||||||||||||| || | |||||||| |||| | ||||| ||
Sbjct: 419 acaactgatggttttaattaaattccagataggcgacaagacaaaaaaaaatcactttgg 360
Query: 106 taccaactgatgg-atctcctttgatcatacacaagt 141
|||||| |||||| |||||||| ||||||||| ||||
Sbjct: 359 taccaattgatggtatctccttcgatcatacagaagt 323
>gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_C05_A010 3', mRNA sequence
Length = 426
Score = 424 bits (214), Expect = e-117
Identities = 303/330 (91%), Gaps = 2/330 (0%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 330 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 272
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | ||||||||| |||||||||||||
Sbjct: 271 gccacaaactcagccaccactcattttactcctctgcctcagcctcaccactcttcttgt 212
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 211 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatccccttggtggagg 152
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 151 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 92
Query: 398 gcgccgtgtggttcttcgacttggccatccagaatccctctcgctactgctcctagtcac 457
|||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||| ||||
Sbjct: 91 gcgccgtgtggttctttgacttggccatcccgaatccctcttgctcctgctcctattcac 32
Query: 458 cagcaacagagcagatcagtggcggcgtga 487
| || | | |||| |||| ||||||||||
Sbjct: 31 cggcgtcggggcaggtcagcggcggcgtga 2
Score = 65.9 bits (33), Expect = 4e-009
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 53 tgatggttttaattaaattccaggtaaccaacaagacataaaata--cacttcggtacca 110
||||||||||||||||||||||| || | |||||||| |||| | ||||| |||||||
Sbjct: 414 tgatggttttaattaaattccagataggcgacaagacaaaaaaaaatcactttggtacca 355
Query: 111 actgatgg-atctcctttgatcatacacaagt 141
| |||||| |||||||| ||||||||| ||||
Sbjct: 354 attgatggtatctccttcgatcatacagaagt 323
>gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 472
Score = 422 bits (213), Expect = e-116
Identities = 282/301 (93%), Gaps = 3/301 (0%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| ||||| ||||||| || |||||||||||||
Sbjct: 345 acagaagtgagaaataagttcacaactaaaactct-agcgatataa-agatgcatttgtc 288
Query: 219 gccacaaactcaatcaccatc-atcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| | |||||||||||| | ||||||||| || ||||||||||
Sbjct: 287 gccacaaactcagccaccacccatcttactcctctgcctcagcctcaccgctcttcttgt 228
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 168
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 167 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 108
Query: 398 gcgccgtgtggttcttcgacttggccatccagaatccctctcgctactgctcctagtcac 457
|||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 107 gcgccgtgtggttcttcgacttggccatcccgaatccctcttgctcctgctcctagtcac 48
Query: 458 c 458
|
Sbjct: 47 c 47
Score = 99.6 bits (50), Expect = 3e-019
Identities = 117/137 (85%), Gaps = 3/137 (2%)
Strand = Plus / Minus
Query: 5 agaacagaaaacgacacatcaattgcccaattctcaaaaggatacaagtgatggttttaa 64
||||||||||| |||||||| | |||||||||| ||||||| |||| ||||||||||||
Sbjct: 471 agaacagaaaatgacacatctagtgcccaattcgcaaaagg--acaactgatggttttaa 414
Query: 65 ttaaattccaggtaaccaacaagacataaaatacacttcggtaccaactgatggatctcc 124
|| |||||||| || ||||||||| |||| ||||| | ||||||||||||| ||| |
Sbjct: 413 tt-aattccagataggcaacaagaccgaaaaaacactatgataccaactgatgggtcttc 355
Query: 125 tttgatcatacacaagt 141
|||||||||||| ||||
Sbjct: 354 tttgatcatacagaagt 338
>gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 398 bits (201), Expect = e-109
Identities = 278/301 (92%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 336 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 278
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | |||| ||| |||||||||||||
Sbjct: 277 gccacaaactcagccaccactcattttactcctctgcctcaagctcaccactcttcttgt 218
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 217 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatccccttggtggagg 158
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 157 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 98
Query: 398 gcgccgtgtggttcttcgacttggccatccagaatccctctcgctactgctcctagtcac 457
|||||||||||||||| ||||||||||||| |||||||||| ||| |||| |||| ||||
Sbjct: 97 gcgccgtgtggttctttgacttggccatcccgaatccctcttgctcctgcacctattcac 38
Query: 458 c 458
|
Sbjct: 37 c 37
Score = 67.9 bits (34), Expect = 9e-010
Identities = 83/97 (85%), Gaps = 3/97 (3%)
Strand = Plus / Minus
Query: 48 acaagtgatggttttaattaaattccaggtaaccaacaagacataaaata--cacttcgg 105
|||| ||||||||||||||||||||||| || | |||||||| |||| | ||||| ||
Sbjct: 425 acaactgatggttttaattaaattccagataggcgacaagacaaaaaaaaatcactttgg 366
Query: 106 taccaactgatgg-atctcctttgatcatacacaagt 141
|||||| |||||| |||||||| ||||||||| ||||
Sbjct: 365 taccaattgatggtatctccttcgatcatacagaagt 329
>gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 419
Score = 398 bits (201), Expect = e-109
Identities = 278/301 (92%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 322 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 264
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | |||| ||| |||||||||||||
Sbjct: 263 gccacaaactcagccaccactcattttactcctctgcctcaagctcaccactcttcttgt 204
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatccccttggtggagg 144
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 143 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 84
Query: 398 gcgccgtgtggttcttcgacttggccatccagaatccctctcgctactgctcctagtcac 457
|||||||||||||||| ||||||||||||| |||||||||| ||| |||| |||| ||||
Sbjct: 83 gcgccgtgtggttctttgacttggccatcccgaatccctcttgctcctgcacctattcac 24
Query: 458 c 458
|
Sbjct: 23 c 23
Score = 60.0 bits (30), Expect = 2e-007
Identities = 82/97 (84%), Gaps = 3/97 (3%)
Strand = Plus / Minus
Query: 48 acaagtgatggttttaattaaattccaggtaaccaacaagacataaaata--cacttcgg 105
|||| ||||||||||||||||||||||| || | |||||||| |||| | || || ||
Sbjct: 411 acaactgatggttttaattaaattccagataggcgacaagacaaaaaaaaatcattttgg 352
Query: 106 taccaactgatgg-atctcctttgatcatacacaagt 141
|||||| |||||| |||||||| ||||||||| ||||
Sbjct: 351 taccaattgatggtatctccttcgatcatacagaagt 315
>gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0111, mRNA sequence
Length = 371
Score = 398 bits (201), Expect = e-109
Identities = 257/273 (94%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 95 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 153
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | ||||||||| |||||||||||||
Sbjct: 154 gccacaaactcagccaccactcattttactcctctgcctcagcctcaccactcttcttgt 213
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatccccttggtggagg 337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 214 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatccccttggtggagg 273
Query: 338 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgaacgattggttat 397
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 274 tctggcggtggcgcttgggcttcttgatgccgttcttgtgcgccttgtacgactggttat 333
Query: 398 gcgccgtgtggttcttcgacttggccatccaga 430
|||||||||||||||| ||||||||||||||||
Sbjct: 334 gcgccgtgtggttctttgacttggccatccaga 366
Score = 67.9 bits (34), Expect = 9e-010
Identities = 83/97 (85%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 48 acaagtgatggttttaattaaattccaggtaaccaacaagacataaaata--cacttcgg 105
|||| ||||||||||||||||||||||| || | |||||||| |||| | ||||| ||
Sbjct: 6 acaactgatggttttaattaaattccagataggcgacaagacaaaaaaaaatcactttgg 65
Query: 106 taccaactgatgg-atctcctttgatcatacacaagt 141
|||||| |||||| |||||||| ||||||||| ||||
Sbjct: 66 taccaattgatggtatctccttcgatcatacagaagt 102
>gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 673
Score = 220 bits (111), Expect = 1e-055
Identities = 129/135 (95%)
Strand = Plus / Minus
Query: 324 ccccttggtggaggtctggcggtggcgcttgggcttcttgatgccgttcttgtgcgcctt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccccttggtggaggtctggcggtggcgcttgggcttcttgatgccgttcttgtgcgcctt 429
Query: 384 gaacgattggttatgcgccgtgtggttcttcgacttggccatccagaatccctctcgcta 443
| |||| ||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct: 428 gtacgactggttatgcgccgtgtggttcttcgacttggccattccgaatccctcttgctc 369
Query: 444 ctgctcctagtcacc 458
|||||||||||||||
Sbjct: 368 ctgctcctagtcacc 354
>gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 548
Score = 220 bits (111), Expect = 1e-055
Identities = 129/135 (95%)
Strand = Plus / Plus
Query: 324 ccccttggtggaggtctggcggtggcgcttgggcttcttgatgccgttcttgtgcgcctt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccccttggtggaggtctggcggtggcgcttgggcttcttgatgccgttcttgtgcgcctt 340
Query: 384 gaacgattggttatgcgccgtgtggttcttcgacttggccatccagaatccctctcgcta 443
| |||| ||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct: 341 gtacgactggttatgcgccgtgtggttcttcgacttggccattccgaatccctcttgctc 400
Query: 444 ctgctcctagtcacc 458
|||||||||||||||
Sbjct: 401 ctgctcctagtcacc 415
>gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155469, DNA
sequence
Length = 744
Score = 196 bits (99), Expect = 1e-048
Identities = 152/167 (91%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 401 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 459
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | |||| ||| |||||||||||||
Sbjct: 460 gccacaaactcagccaccactcattttactcctctgcctcaagctcaccactcttcttgt 519
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatc 324
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 520 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatc 566
Score = 77.8 bits (39), Expect = 9e-013
Identities = 117/140 (83%), Gaps = 6/140 (4%)
Strand = Plus / Plus
Query: 5 agaacagaaaacgacacatcaattgcccaattctcaaaaggatacaagtgatggttttaa 64
||||||||||| |||||||||| || |||||| |||| | |||| ||||||||||||
Sbjct: 272 agaacagaaaatgacacatcaagggcacaattcgcaaagg---acaactgatggttttaa 328
Query: 65 ttaaattccaggtaaccaacaagacataaaata--cacttcggtaccaactgatgg-atc 121
||||||||||| || | |||||||| |||| | ||||| |||||||| |||||| |||
Sbjct: 329 ttaaattccagataggcgacaagacaaaaaaaaatcactttggtaccaattgatggtatc 388
Query: 122 tcctttgatcatacacaagt 141
||||| ||||||||| ||||
Sbjct: 389 tccttcgatcatacagaagt 408
>gb|CW205319.1|CW205319 104_633_11187006_116_36932_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187006, DNA
sequence
Length = 596
Score = 196 bits (99), Expect = 1e-048
Identities = 152/167 (91%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 78 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 136
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | |||| ||| |||||||||||||
Sbjct: 137 gccacaaactcagccaccactcattttactcctctgcctcaagctcaccactcttcttgt 196
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatc 324
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 197 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatc 243
Score = 52.0 bits (26), Expect = 5e-005
Identities = 72/85 (84%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 60 tttaattaaattccaggtaaccaacaagacataaaata--cacttcggtaccaactgatg 117
|||||||||||||||| || | |||||||| |||| | ||||| |||||||| |||||
Sbjct: 1 tttaattaaattccagataggctacaagacaaaaaaaaatcactttggtaccaattgatg 60
Query: 118 g-atctcctttgatcatacacaagt 141
| |||||||| ||||||||| ||||
Sbjct: 61 gtatctccttcgatcatacagaagt 85
>gb|CW205320.1|CW205320 104_633_11187006_148_36931_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187006, DNA
sequence
Length = 596
Score = 196 bits (99), Expect = 1e-048
Identities = 152/167 (91%), Gaps = 2/167 (1%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 517 acagaagtgagaattaagttcacaactaaaaccct-agcgatacaagagatgcatttgtc 459
Query: 219 gccacaaactcaatcacca-tcatcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| |||| ||||||||| | |||| ||| |||||||||||||
Sbjct: 458 gccacaaactcagccaccactcattttactcctctgcctcaagctcaccactcttcttgt 399
Query: 278 tgcccttccttgagtacctcaagttcctcagaaacttcgggtccatc 324
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 398 tgcccttccttgagtacctcaagttcctcagaaacttagggtccatc 352
Score = 54.0 bits (27), Expect = 1e-005
Identities = 73/86 (84%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 59 ttttaattaaattccaggtaaccaacaagacataaaata--cacttcggtaccaactgat 116
||||||||||||||||| || | |||||||| |||| | ||||| |||||||| ||||
Sbjct: 595 ttttaattaaattccagataggcgacaagacaaaaaaaaatcactttggtaccaattgat 536
Query: 117 gg-atctcctttgatcatacacaagt 141
|| |||||||| ||||||||| ||||
Sbjct: 535 ggtatctccttcgatcatacagaagt 510
>gb|CW393605.1|CW393605 fsbb001f080l22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080l22, DNA
sequence
Length = 717
Score = 167 bits (84), Expect = 1e-039
Identities = 128/140 (91%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| ||||| || |||||||||||||||||||||
Sbjct: 579 acagaagtgagaaataagttcacaactaaaactct-agtgatacaagagatgcatttgtc 637
Query: 219 gccacaaactcaatcaccatc-atcttactcctcggactcagcctcgccactcttcttgt 277
|||||||||||| ||||| | |||||||||||| | ||||||||| |||||||||||||
Sbjct: 638 gccacaaactcagccaccacccatcttactcctctgcctcagcctcaccactcttcttgt 697
Query: 278 tgcccttccttgagtacctc 297
||||||||||||||||||||
Sbjct: 698 tgcccttccttgagtacctc 717
Score = 75.8 bits (38), Expect = 4e-012
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 5 agaacagaaaacgacacatcaattgcccaattctcaaaaggatacaagtgatggttttaa 64
||||||||||| |||||||||| |||||||||| ||||||| |||| ||||||||||||
Sbjct: 453 agaacagaaaatgacacatcaagtgcccaattcgcaaaagg--acaactgatggttttaa 510
Query: 65 ttaaattccaggtaaccaacaagac 89
|| |||||||| || |||||||||
Sbjct: 511 tt-aattccagataggcaacaagac 534
>gb|AI724128.1|AI724128 RHIZ1_7_B02.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 215
Score = 97.6 bits (49), Expect = 1e-018
Identities = 116/136 (85%), Gaps = 3/136 (2%)
Strand = Plus / Minus
Query: 6 gaacagaaaacgacacatcaattgcccaattctcaaaaggatacaagtgatggttttaat 65
|||||||||| |||||||| | |||||||||| |||||||| ||| |||||||||||||
Sbjct: 215 gaacagaaaatgacacatctagtgcccaattcgcaaaagga--caactgatggttttaat 158
Query: 66 taaattccaggtaaccaacaagacataaaatacacttcggtaccaactgatggatctcct 125
||| |||||| || ||||||||| |||| ||||| | ||||||||||||| ||| ||
Sbjct: 157 taa-ttccagataggcaacaagaccgaaaaaacactatgataccaactgatgggtcttct 99
Query: 126 ttgatcatacacaagt 141
||||||||||| ||||
Sbjct: 98 ttgatcatacagaagt 83
Score = 79.8 bits (40), Expect = 2e-013
Identities = 66/72 (91%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagagatgcatttgtc 218
||||||||||||| |||||||||| |||| ||||| ||||||| || |||||||||||||
Sbjct: 90 acagaagtgagaaataagttcacaactaaaactct-agcgatataa-agatgcatttgtc 33
Query: 219 gccacaaactca 230
||||||||||||
Sbjct: 32 gccacaaactca 21
>gb|CF769744.1|CF769744 DSBF1_3_C07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C07_A010 3', mRNA sequence
Length = 147
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 162 gaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
|||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 46 gaagtgagaaataagttcacaactaaaactcatagcgatacaagag 1
>gb|CF756080.1|CF756080 DSAF1_3_H08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_H08_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF756152.1|CF756152 DSAF1_3_H08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_H08_A011 3', mRNA sequence
Length = 141
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF757474.1|CF757474 DSAF1_18_D03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_18_D03_A011 3', mRNA sequence
Length = 141
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF757918.1|CF757918 DSAF1_25_A04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_A04_A011 3', mRNA sequence
Length = 129
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF760293.1|CF760293 DSAF1_58_A02.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_58_A02_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF760343.1|CF760343 DSAF1_58_H09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_58_H09_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF760865.1|CF760865 DSAF1_67_G04.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_67_G04_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF769495.1|CF769495 DSBF1_2_B11.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B11_A010 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF769581.1|CF769581 DSBF1_2_B11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B11_A010 3', mRNA sequence
Length = 141
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF769668.1|CF769668 DSBF1_3_C07.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C07_A010 5', mRNA sequence
Length = 151
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF769669.1|CF769669 DSBF1_3_C08.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C08_A010 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF769745.1|CF769745 DSBF1_3_C08.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C08_A010 3', mRNA sequence
Length = 129
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
>gb|CF771805.1|CF771805 DSBF1_24_C11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_24_C11_A010 3', mRNA sequence
Length = 142
Score = 58.0 bits (29), Expect = 9e-007
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 159 acagaagtgagaactaagttcacagctaagactcttagcgatacaagag 207
||||||||||||| |||||||||| |||| |||| ||||||||||||||
Sbjct: 48 acagaagtgagaaataagttcacaactaaaactc-tagcgatacaagag 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,585
Number of Sequences: 832831
Number of extensions: 136585
Number of successful extensions: 37392
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37281
Number of HSP's gapped (non-prelim): 68
length of query: 545
length of database: 491,359,669
effective HSP length: 19
effective length of query: 526
effective length of database: 475,535,880
effective search space: 250131872880
effective search space used: 250131872880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)