BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.11
(514 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sor... 293 8e-078
gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1... 287 5e-076
gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cD... 287 5e-076
gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stresse... 287 5e-076
gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stresse... 287 5e-076
gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sor... 285 2e-075
gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (L... 274 7e-072
gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (L... 274 7e-072
gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorgh... 186 1e-045
gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorgh... 186 1e-045
gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorgh... 96 4e-018
gb|CW205319.1|CW205319 104_633_11187006_116_36932_021 Sorgh... 96 4e-018
gb|CW205320.1|CW205320 104_633_11187006_148_36931_021 Sorgh... 96 4e-018
gb|CW393605.1|CW393605 fsbb001f080l22f0 Sorghum methylation... 80 2e-013
>gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 352
Score = 293 bits (148), Expect = 8e-078
Identities = 166/172 (96%)
Strand = Plus / Plus
Query: 114 atggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacggc 173
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 85 atggccaagtcgaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 144
Query: 174 atcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcctg 233
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 145 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttctg 204
Query: 234 aggaacctgaggtattcaaggaagggcaacaagaagagtggtgaggctgagg 285
|||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 aggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgagg 256
>gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 472
Score = 287 bits (145), Expect = 5e-076
Identities = 166/173 (95%)
Strand = Plus / Plus
Query: 113 gatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacgg 172
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 79 gatggccaagtcgaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacgg 138
Query: 173 catcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcct 232
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 139 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 198
Query: 233 gaggaacctgaggtattcaaggaagggcaacaagaagagtggtgaggctgagg 285
||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 199 gaggaacttgaggtactcaaggaagggcaacaagaagagcggtgaggctgagg 251
>gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0111, mRNA sequence
Length = 371
Score = 287 bits (145), Expect = 5e-076
Identities = 166/173 (95%)
Strand = Plus / Minus
Query: 113 gatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacgg 172
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 362 gatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacgg 303
Query: 173 catcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcct 232
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 302 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttct 243
Query: 233 gaggaacctgaggtattcaaggaagggcaacaagaagagtggtgaggctgagg 285
||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgagg 190
>gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_H03_A011 5', mRNA sequence
Length = 448
Score = 287 bits (145), Expect = 5e-076
Identities = 166/173 (95%)
Strand = Plus / Plus
Query: 113 gatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacgg 172
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 63 gatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacgg 122
Query: 173 catcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcct 232
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 123 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttct 182
Query: 233 gaggaacctgaggtattcaaggaagggcaacaagaagagtggtgaggctgagg 285
||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 183 gaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgagg 235
>gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_C05_A010 3', mRNA sequence
Length = 426
Score = 287 bits (145), Expect = 5e-076
Identities = 166/173 (95%)
Strand = Plus / Plus
Query: 113 gatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacgg 172
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 63 gatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacgg 122
Query: 173 catcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcct 232
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 123 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttct 182
Query: 233 gaggaacctgaggtattcaaggaagggcaacaagaagagtggtgaggctgagg 285
||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 183 gaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgagg 235
>gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 285 bits (144), Expect = 2e-075
Identities = 165/172 (95%)
Strand = Plus / Plus
Query: 114 atggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacggc 173
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 85 atggccaagtcgaagaaccacacggtgcataaccagtcgtacaaggcgcacaagaacggc 144
Query: 174 atcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcctg 233
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 145 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttctg 204
Query: 234 aggaacctgaggtattcaaggaagggcaacaagaagagtggtgaggctgagg 285
|||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 aggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgagg 256
>gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 274 bits (138), Expect = 7e-072
Identities = 159/166 (95%)
Strand = Plus / Plus
Query: 113 gatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacgg 172
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 69 gatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacgg 128
Query: 173 catcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcct 232
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 129 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttct 188
Query: 233 gaggaacctgaggtattcaaggaagggcaacaagaagagtggtgag 278
||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 189 gaggaacttgaggtactcaaggaagggcaacaagaagagtggtgag 234
>gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 419
Score = 274 bits (138), Expect = 7e-072
Identities = 159/166 (95%)
Strand = Plus / Plus
Query: 113 gatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacgg 172
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 55 gatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacgg 114
Query: 173 catcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcct 232
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 115 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttct 174
Query: 233 gaggaacctgaggtattcaaggaagggcaacaagaagagtggtgag 278
||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 175 gaggaacttgaggtactcaaggaagggcaacaagaagagtggtgag 220
>gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 673
Score = 186 bits (94), Expect = 1e-045
Identities = 100/102 (98%)
Strand = Plus / Plus
Query: 114 atggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacggc 173
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 atggccaagtcgaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 446
Query: 174 atcaagaagcccaagcgccaccggcagacctccaccaagggg 215
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 447 atcaagaagcccaagcgccaccgccagacctccaccaagggg 488
>gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 548
Score = 186 bits (94), Expect = 1e-045
Identities = 100/102 (98%)
Strand = Plus / Minus
Query: 114 atggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacggc 173
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 atggccaagtcgaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 323
Query: 174 atcaagaagcccaagcgccaccggcagacctccaccaagggg 215
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 atcaagaagcccaagcgccaccgccagacctccaccaagggg 281
>gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155469, DNA
sequence
Length = 744
Score = 95.6 bits (48), Expect = 4e-018
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 215 gatggaccccaagttcctgaggaacctgaggtattcaaggaagggcaacaagaagagtgg 274
||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 566 gatggaccctaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 507
Query: 275 tgag 278
||||
Sbjct: 506 tgag 503
>gb|CW205319.1|CW205319 104_633_11187006_116_36932_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187006, DNA
sequence
Length = 596
Score = 95.6 bits (48), Expect = 4e-018
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 215 gatggaccccaagttcctgaggaacctgaggtattcaaggaagggcaacaagaagagtgg 274
||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 243 gatggaccctaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 184
Query: 275 tgag 278
||||
Sbjct: 183 tgag 180
>gb|CW205320.1|CW205320 104_633_11187006_148_36931_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187006, DNA
sequence
Length = 596
Score = 95.6 bits (48), Expect = 4e-018
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 215 gatggaccccaagttcctgaggaacctgaggtattcaaggaagggcaacaagaagagtgg 274
||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 352 gatggaccctaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 411
Query: 275 tgag 278
||||
Sbjct: 412 tgag 415
>gb|CW393605.1|CW393605 fsbb001f080l22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080l22, DNA
sequence
Length = 717
Score = 79.8 bits (40), Expect = 2e-013
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 242 gaggtattcaaggaagggcaacaagaagagtggtgaggctgagg 285
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaggtactcaaggaagggcaacaagaagagtggtgaggctgagg 674
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,124
Number of Sequences: 832831
Number of extensions: 131124
Number of successful extensions: 33370
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33354
Number of HSP's gapped (non-prelim): 16
length of query: 514
length of database: 491,359,669
effective HSP length: 19
effective length of query: 495
effective length of database: 475,535,880
effective search space: 235390260600
effective search space used: 235390260600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)