BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.1
(634 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sor... 276 2e-072
gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sor... 268 6e-070
gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1... 266 2e-069
gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cD... 266 2e-069
gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stresse... 266 2e-069
gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stresse... 266 2e-069
gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (L... 250 1e-064
gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (L... 250 1e-064
gb|AW564045.1|AW564045 LG1_281_C02.b1_A002 Light Grown 1 (L... 198 4e-049
gb|AW680999.1|AW680999 WS1_9_D08.b1_A002 Water-stressed 1 (... 198 4e-049
gb|AW746735.1|AW746735 WS1_55_F02.b1_A002 Water-stressed 1 ... 198 4e-049
gb|AW924551.1|AW924551 WS1_70_F09.b1_A002 Water-stressed 1 ... 198 4e-049
gb|AW925010.1|AW925010 WS1_74_C08.b1_A002 Water-stressed 1 ... 198 4e-049
gb|BE361054.1|BE361054 DG1_69_E05.b1_A002 Dark Grown 1 (DG1... 198 4e-049
gb|BE918046.1|BE918046 OV1_1_C02.b1_A002 Ovary 1 (OV1) Sorg... 198 4e-049
gb|BG157932.1|BG157932 EM1_6_F11.b1_A002 Embryo 1 (EM1) Sor... 198 4e-049
gb|BG356205.1|BG356205 EM1_22_G05.b1_A002 Embryo 1 (EM1) So... 198 4e-049
gb|BG817539.1|BG817539 EM1_74_C12.b1_A002 Embryo 1 (EM1) So... 198 4e-049
gb|BI246082.1|BI246082 IP1_68_E11.b1_A002 Immature pannicle... 198 4e-049
gb|BM322378.1|BM322378 PIC1_4_A09.b1_A002 Pathogen-infected... 198 4e-049
gb|BM324015.1|BM324015 PIC1_30_C10.b1_A002 Pathogen-infecte... 198 4e-049
gb|BM324255.1|BM324255 PIC1_26_B08.b1_A002 Pathogen-infecte... 198 4e-049
gb|BM325149.1|BM325149 PIC1_40_B03.b1_A002 Pathogen-infecte... 198 4e-049
gb|CB927298.1|CB927298 ABA1_14_B07.g1_A012 Abscisic acid-tr... 198 4e-049
gb|CD206269.1|CD206269 HS1_21_E12.g1_A012 Heat-shocked seed... 198 4e-049
gb|CD220348.1|CD220348 CCC1_66_E08.g1_A007 Callus culture/c... 198 4e-049
gb|CD220523.1|CD220523 CCC1_67_C03.g1_A007 Callus culture/c... 198 4e-049
gb|CD223833.1|CD223833 CCC1_30_E04.g1_A007 Callus culture/c... 198 4e-049
gb|CD225149.1|CD225149 CCC1_38_B03.g1_A007 Callus culture/c... 198 4e-049
gb|CD227207.1|CD227207 CCC1_4_A11.g1_A007 Callus culture/ce... 198 4e-049
gb|CD227223.1|CD227223 CCC1_4_D12.g1_A007 Callus culture/ce... 198 4e-049
gb|CD229670.1|CD229670 CCC1_18_D11.g1_A007 Callus culture/c... 198 4e-049
gb|CD230532.1|CD230532 SS1_44_B12.g1_A012 Salt-stressed see... 198 4e-049
gb|CD233854.1|CD233854 SS1_4_F12.g1_A012 Salt-stressed seed... 198 4e-049
gb|CD428832.1|CD428832 ETH1_36_E04.g1_A002 Ethylene-treated... 198 4e-049
gb|CD430053.1|CD430053 ETH1_13_H02.g1_A002 Ethylene-treated... 198 4e-049
gb|CD431427.1|CD431427 ETH1_8_E08.g1_A002 Ethylene-treated ... 198 4e-049
gb|CD431763.1|CD431763 ETH1_10_B09.g1_A002 Ethylene-treated... 198 4e-049
gb|CD462495.1|CD462495 ETH1_37_G07.g1_A002 Ethylene-treated... 198 4e-049
gb|CF433887.1|CF433887 NIT1_30_B09.g1_A002 Nitrogen-deficie... 198 4e-049
gb|CF482426.1|CF482426 POL1_6_H05.g1_A002 Pollen Sorghum bi... 198 4e-049
gb|CN126717.1|CN126717 RHOH1_18_F08.g1_A002 Acid- and alkal... 198 4e-049
gb|CN128670.1|CN128670 RHOH1_30_H08.g1_A002 Acid- and alkal... 198 4e-049
gb|CN131236.1|CN131236 RHOH1_46_E10.g1_A002 Acid- and alkal... 198 4e-049
gb|CN131826.1|CN131826 OX1_2_B07.g1_A002 Oxidatively-stress... 198 4e-049
gb|CN132489.1|CN132489 OX1_6_B02.g1_A002 Oxidatively-stress... 198 4e-049
gb|CN136834.1|CN136834 OX1_53_C07.g1_A002 Oxidatively-stres... 198 4e-049
gb|CN142193.1|CN142193 WOUND1_4_A06.g1_A002 Wounded leaves ... 198 4e-049
gb|CN144489.1|CN144489 WOUND1_22_E03.g1_A002 Wounded leaves... 198 4e-049
gb|CN148300.1|CN148300 WOUND1_55_A07.g1_A002 Wounded leaves... 198 4e-049
gb|CX608896.1|CX608896 ANR1_9_A03.g1_A002 Anaerobic roots S... 198 4e-049
gb|CX613347.1|CX613347 GABR1_7_D11.g1_A002 GA- or brassinol... 198 4e-049
gb|CX616220.1|CX616220 GABR1_26_D02.g1_A002 GA- or brassino... 198 4e-049
gb|CX617746.1|CX617746 GABR1_35_C01.g1_A002 GA- or brassino... 198 4e-049
gb|CX618114.1|CX618114 GABR1_37_F09.g1_A002 GA- or brassino... 198 4e-049
gb|CX620754.1|CX620754 GABR1_53_F12.g1_A002 GA- or brassino... 198 4e-049
gb|CX622408.1|CX622408 GABR1_63_F11.g2_A002 GA- or brassino... 198 4e-049
gb|CX622567.1|CX622567 GABR1_64_E10.g2_A002 GA- or brassino... 198 4e-049
gb|BG101741.1|BG101741 EM1_5_G02.b1_A002 Embryo 1 (EM1) Sor... 190 1e-046
gb|CD228456.1|CD228456 CCC1_7_E10.g1_A007 Callus culture/ce... 190 1e-046
gb|CF488092.1|CF488092 POL1_47_F04.g1_A002 Pollen Sorghum b... 190 1e-046
gb|CX610597.1|CX610597 ANR1_19_E02.g1_A002 Anaerobic roots ... 190 1e-046
gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorgh... 180 1e-043
gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorgh... 180 1e-043
gb|BG463923.1|BG463923 EM1_52_E06.b1_A002 Embryo 1 (EM1) So... 176 2e-042
gb|CD222248.1|CD222248 CCC1_2_E07.g1_A007 Callus culture/ce... 176 2e-042
gb|CF484324.1|CF484324 POL1_4_C11.g1_A002 Pollen Sorghum bi... 168 4e-040
gb|CD427036.1|CD427036 SA1_17_C09.b1_A002 Salicylic acid-tr... 155 6e-036
gb|CW439738.1|CW439738 fsbb001f158a12k0 Sorghum methylation... 131 9e-029
gb|AW286714.2|AW286714 LG1_204_D05.b1_A002 Light Grown 1 (L... 131 9e-029
gb|AW677661.1|AW677661 WS1_10_H03.b1_A002 Water-stressed 1 ... 131 9e-029
gb|CX609218.1|CX609218 ANR1_11_H04.b1_A002 Anaerobic roots ... 131 9e-029
gb|CX609304.1|CX609304 ANR1_11_H04.g1_A002 Anaerobic roots ... 131 9e-029
gb|CX612032.1|CX612032 ANR1_28_D05.b1_A002 Anaerobic roots ... 131 9e-029
gb|CX612122.1|CX612122 ANR1_28_D05.g1_A002 Anaerobic roots ... 131 9e-029
gb|CW323656.1|CW323656 104_817_11476747_148_35960_066 Sorgh... 109 3e-022
gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorgh... 82 7e-014
gb|CW205319.1|CW205319 104_633_11187006_116_36932_021 Sorgh... 82 7e-014
gb|CW205320.1|CW205320 104_633_11187006_148_36931_021 Sorgh... 82 7e-014
gb|CW283230.1|CW283230 104_759_11409134_148_35474_053 Sorgh... 74 2e-011
gb|CW356628.1|CW356628 fsbb001f021m23f0 Sorghum methylation... 74 2e-011
gb|CW393605.1|CW393605 fsbb001f080l22f0 Sorghum methylation... 68 1e-009
gb|CX608820.1|CX608820 ANR1_9_A03.b1_A002 Anaerobic roots S... 66 4e-009
gb|AW563235.1|AW563235 LG1_204_D05.g1_A002 Light Grown 1 (L... 64 2e-008
gb|AW677706.1|AW677706 WS1_10_H03.g1_A002 Water-stressed 1 ... 64 2e-008
gb|BE363876.1|BE363876 PI1_10_D06.b1_A002 Pathogen induced ... 48 0.001
gb|BE363945.1|BE363945 PI1_10_D06.g1_A002 Pathogen induced ... 48 0.001
gb|CW332452.1|CW332452 104_830_11481429_116_36036_093 Sorgh... 44 0.015
gb|AW924333.1|AW924333 WS1_52_B06.b1_A002 Water-stressed 1 ... 44 0.015
gb|BE357610.1|BE357610 DG1_21_D09.b1_A002 Dark Grown 1 (DG1... 44 0.015
gb|BE598153.1|BE598153 PI1_66_D01.b1_A002 Pathogen induced ... 44 0.015
gb|BE599415.1|BE599415 PI1_87_C06.b1_A002 Pathogen induced ... 44 0.015
gb|BG052055.1|BG052055 RHIZ2_5_E05.b1_A003 Rhizome2 (RHIZ2)... 44 0.015
gb|BG357047.1|BG357047 OV2_9_C07.b1_A002 Ovary 2 (OV2) Sorg... 44 0.015
gb|CD431023.1|CD431023 ETH1_6_A06.g1_A002 Ethylene-treated ... 44 0.015
gb|CN125573.1|CN125573 RHOH1_11_H09.g1_A002 Acid- and alkal... 44 0.015
gb|CN131150.1|CN131150 RHOH1_46_E10.b1_A002 Acid- and alkal... 44 0.015
gb|CN134149.1|CN134149 OX1_20_C05.g1_A002 Oxidatively-stres... 44 0.015
gb|CX622082.1|CX622082 GABR1_61_H11.g2_A002 GA- or brassino... 44 0.015
gb|BZ330468.1|BZ330468 hv92f04.g1 WGS-SbicolorF (JM107 adap... 42 0.061
gb|BG488449.1|BG488449 RHIZ2_63_H05.b1_A003 Rhizome2 (RHIZ2... 42 0.061
gb|BG933091.1|BG933091 WS1_29_B02.b1_A002 Water-stressed 1 ... 42 0.061
gb|BE367594.1|BE367594 PI1_9_E12.b1_A002 Pathogen induced 1... 40 0.24
gb|BG412312.1|BG412312 OV2_40_D06.b1_A002 Ovary 2 (OV2) Sor... 40 0.24
>gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 352
Score = 276 bits (139), Expect = 2e-072
Identities = 172/183 (93%)
Strand = Plus / Plus
Query: 128 aatggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacgg 187
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 84 aatggccaagtcgaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacgg 143
Query: 188 cattaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcct 247
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 144 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 203
Query: 248 gaggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgagga 307
||||||| ||||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 204 gaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagagga 263
Query: 308 gta 310
|||
Sbjct: 264 gta 266
>gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 268 bits (135), Expect = 6e-070
Identities = 171/183 (93%)
Strand = Plus / Plus
Query: 128 aatggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacgg 187
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 84 aatggccaagtcgaagaaccacacggtgcataaccagtcgtacaaggcgcacaagaacgg 143
Query: 188 cattaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcct 247
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 144 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 203
Query: 248 gaggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgagga 307
||||||| ||||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 204 gaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagagga 263
Query: 308 gta 310
|||
Sbjct: 264 gta 266
>gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 472
Score = 266 bits (134), Expect = 2e-069
Identities = 170/182 (93%)
Strand = Plus / Plus
Query: 129 atggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacggc 188
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 80 atggccaagtcgaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 139
Query: 189 attaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcctg 248
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 140 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttctg 199
Query: 249 aggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgaggag 308
|||||| ||||||| || |||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 200 aggaacttgaggtactcaaggaagggcaacaagaagagcggtgaggctgaggcagaggag 259
Query: 309 ta 310
||
Sbjct: 260 ta 261
>gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0111, mRNA sequence
Length = 371
Score = 266 bits (134), Expect = 2e-069
Identities = 170/182 (93%)
Strand = Plus / Minus
Query: 129 atggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacggc 188
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 361 atggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 302
Query: 189 attaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcctg 248
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 301 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttctg 242
Query: 249 aggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgaggag 308
|||||| ||||||| || |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 241 aggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagaggag 182
Query: 309 ta 310
||
Sbjct: 181 ta 180
>gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_H03_A011 5', mRNA sequence
Length = 448
Score = 266 bits (134), Expect = 2e-069
Identities = 170/182 (93%)
Strand = Plus / Plus
Query: 129 atggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacggc 188
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 64 atggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 123
Query: 189 attaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcctg 248
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 124 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttctg 183
Query: 249 aggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgaggag 308
|||||| ||||||| || |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 184 aggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagaggag 243
Query: 309 ta 310
||
Sbjct: 244 ta 245
>gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_C05_A010 3', mRNA sequence
Length = 426
Score = 266 bits (134), Expect = 2e-069
Identities = 170/182 (93%)
Strand = Plus / Plus
Query: 129 atggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacggc 188
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 64 atggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 123
Query: 189 attaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcctg 248
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 124 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttctg 183
Query: 249 aggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgaggag 308
|||||| ||||||| || |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 184 aggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagaggag 243
Query: 309 ta 310
||
Sbjct: 244 ta 245
>gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 250 bits (126), Expect = 1e-064
Identities = 168/182 (92%)
Strand = Plus / Plus
Query: 129 atggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacggc 188
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 70 atggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 129
Query: 189 attaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcctg 248
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 130 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttctg 189
Query: 249 aggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgaggag 308
|||||| ||||||| || |||||||||||||| |||||||||||| ||| || ||||||
Sbjct: 190 aggaacttgaggtactcaaggaagggcaacaagaagagtggtgagcttgaggcagaggag 249
Query: 309 ta 310
||
Sbjct: 250 ta 251
>gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 419
Score = 250 bits (126), Expect = 1e-064
Identities = 168/182 (92%)
Strand = Plus / Plus
Query: 129 atggccaagtcgaagaaccacacggcgcacaaccagtcgttcaaggcgcacaagaacggc 188
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 56 atggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacggc 115
Query: 189 attaagaagcccaagcgccaccgccagacctccaccaaggggatggaccccaagttcctg 248
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 116 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttctg 175
Query: 249 aggaacctgaggtattctaggaagggcaacaaaaagagtggtgaggctgaagctgaggag 308
|||||| ||||||| || |||||||||||||| |||||||||||| ||| || ||||||
Sbjct: 176 aggaacttgaggtactcaaggaagggcaacaagaagagtggtgagcttgaggcagaggag 235
Query: 309 ta 310
||
Sbjct: 236 ta 237
>gb|AW564045.1|AW564045 LG1_281_C02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 418
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 42 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 101
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 102 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 161
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 162 catcaataactg 173
>gb|AW680999.1|AW680999 WS1_9_D08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 24 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 83
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 84 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 143
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 144 catcaataactg 155
>gb|AW746735.1|AW746735 WS1_55_F02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 447
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 33 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 92
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 93 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 152
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 153 catcaataactg 164
>gb|AW924551.1|AW924551 WS1_70_F09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 33 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 92
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 93 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 152
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 153 catcaataactg 164
>gb|AW925010.1|AW925010 WS1_74_C08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 426
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 45 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 104
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 105 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 164
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 165 catcaataactg 176
>gb|BE361054.1|BE361054 DG1_69_E05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 582
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 37 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 96
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 97 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 156
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 157 catcaataactg 168
>gb|BE918046.1|BE918046 OV1_1_C02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 547
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 7 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 66
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 67 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 126
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 127 catcaataactg 138
>gb|BG157932.1|BG157932 EM1_6_F11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 506
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 34 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 93
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 94 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 153
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 154 catcaataactg 165
>gb|BG356205.1|BG356205 EM1_22_G05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 525
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 31 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 90
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 91 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 150
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 151 catcaataactg 162
>gb|BG817539.1|BG817539 EM1_74_C12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 427
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 48 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 107
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 108 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 167
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 168 catcaataactg 179
>gb|BI246082.1|BI246082 IP1_68_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 44 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 103
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 104 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 163
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 164 catcaataactg 175
>gb|BM322378.1|BM322378 PIC1_4_A09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 576
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 46 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 105
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 106 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 165
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 166 catcaataactg 177
>gb|BM324015.1|BM324015 PIC1_30_C10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 601
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 33 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 92
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 93 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 152
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 153 catcaataactg 164
>gb|BM324255.1|BM324255 PIC1_26_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 552
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 20 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 79
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 80 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 139
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 140 catcaataactg 151
>gb|BM325149.1|BM325149 PIC1_40_B03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 384
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 24 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 83
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 84 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 143
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 144 catcaataactg 155
>gb|CB927298.1|CB927298 ABA1_14_B07.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_14_B07_A012 5', mRNA sequence
Length = 607
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 51 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 110
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 111 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 170
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 171 catcaataactg 182
>gb|CD206269.1|CD206269 HS1_21_E12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_E12_A012 5', mRNA sequence
Length = 728
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 44 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 103
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 104 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 163
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 164 catcaataactg 175
>gb|CD220348.1|CD220348 CCC1_66_E08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_66_E08_A007 5', mRNA sequence
Length = 649
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 53 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 112
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 113 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 172
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 173 catcaataactg 184
>gb|CD220523.1|CD220523 CCC1_67_C03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_C03_A007 5', mRNA sequence
Length = 653
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 44 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 103
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 104 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 163
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 164 catcaataactg 175
>gb|CD223833.1|CD223833 CCC1_30_E04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_E04_A007 5', mRNA sequence
Length = 634
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 53 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 112
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 113 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 172
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 173 catcaataactg 184
>gb|CD225149.1|CD225149 CCC1_38_B03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_38_B03_A007 5', mRNA sequence
Length = 627
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 53 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 112
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 113 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 172
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 173 catcaataactg 184
>gb|CD227207.1|CD227207 CCC1_4_A11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_A11_A007 5', mRNA sequence
Length = 624
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 48 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 107
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 108 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 167
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 168 catcaataactg 179
>gb|CD227223.1|CD227223 CCC1_4_D12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_D12_A007 5', mRNA sequence
Length = 607
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 53 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 112
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 113 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 172
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 173 catcaataactg 184
>gb|CD229670.1|CD229670 CCC1_18_D11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_18_D11_A007 5', mRNA sequence
Length = 643
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 57 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 116
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 117 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 176
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 177 catcaataactg 188
>gb|CD230532.1|CD230532 SS1_44_B12.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_B12_A012 5', mRNA sequence
Length = 709
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 65 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 124
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 125 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 184
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 185 catcaataactg 196
>gb|CD233854.1|CD233854 SS1_4_F12.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_4_F12_A012 5', mRNA sequence
Length = 646
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 50 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 109
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 110 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 169
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 170 catcaataactg 181
>gb|CD428832.1|CD428832 ETH1_36_E04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_E04_A002 5', mRNA sequence
Length = 581
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 51 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 110
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 111 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 170
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 171 catcaataactg 182
>gb|CD430053.1|CD430053 ETH1_13_H02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_13_H02_A002 5', mRNA sequence
Length = 609
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 57 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 116
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 117 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 176
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 177 catcaataactg 188
>gb|CD431427.1|CD431427 ETH1_8_E08.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_8_E08_A002 5', mRNA sequence
Length = 611
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 51 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 110
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 111 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 170
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 171 catcaataactg 182
>gb|CD431763.1|CD431763 ETH1_10_B09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_10_B09_A002 5', mRNA sequence
Length = 754
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 47 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 106
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 107 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 166
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 167 catcaataactg 178
>gb|CD462495.1|CD462495 ETH1_37_G07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_37_G07_A002 5', mRNA sequence
Length = 608
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 51 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 110
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 111 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 170
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 171 catcaataactg 182
>gb|CF433887.1|CF433887 NIT1_30_B09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_B09_A002 5', mRNA sequence
Length = 719
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 59 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 118
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 119 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 178
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 179 catcaataactg 190
>gb|CF482426.1|CF482426 POL1_6_H05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_6_H05_A002 5', mRNA sequence
Length = 800
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 40 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 99
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 100 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 159
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 160 catcaataactg 171
>gb|CN126717.1|CN126717 RHOH1_18_F08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_F08_A002 5', mRNA sequence
Length = 862
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 37 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 96
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 97 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 156
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 157 catcaataactg 168
>gb|CN128670.1|CN128670 RHOH1_30_H08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_H08_A002 5', mRNA sequence
Length = 814
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 50 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 109
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 110 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 169
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 170 catcaataactg 181
>gb|CN131236.1|CN131236 RHOH1_46_E10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_E10_A002 5', mRNA sequence
Length = 800
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 55 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 114
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 115 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 174
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 175 catcaataactg 186
>gb|CN131826.1|CN131826 OX1_2_B07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_2_B07_A002 5', mRNA sequence
Length = 636
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 41 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 100
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 101 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 160
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 161 catcaataactg 172
>gb|CN132489.1|CN132489 OX1_6_B02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_6_B02_A002 5', mRNA sequence
Length = 390
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 54 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 113
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 114 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 173
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 174 catcaataactg 185
>gb|CN136834.1|CN136834 OX1_53_C07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_53_C07_A002 5', mRNA sequence
Length = 753
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 49 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 108
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 109 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 168
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 169 catcaataactg 180
>gb|CN142193.1|CN142193 WOUND1_4_A06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_4_A06_A002 5', mRNA sequence
Length = 847
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 61 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 120
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 121 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 180
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 181 catcaataactg 192
>gb|CN144489.1|CN144489 WOUND1_22_E03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_E03_A002 5', mRNA sequence
Length = 833
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 37 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 96
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 97 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 156
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 157 catcaataactg 168
>gb|CN148300.1|CN148300 WOUND1_55_A07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_A07_A002 5', mRNA sequence
Length = 817
Score = 198 bits (100), Expect = 4e-049
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 503 ctcgtctccccctaggggatcgtcggagaggaatcgcaaagagggccgtctcatccgagt 562
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 21 ctcgtcttcccctaggggatcgccggagaggaatcgcaaagagggccgtctcatccaagt 80
Query: 563 taaggaagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctg 622
||||||||||||||||||||||||| |||| |||||||| || |||||||||||||| ||
Sbjct: 81 taaggaagccatggagcacaaggagactggatgccaggcacctgagggacccatcctttg 140
Query: 623 catcaataactg 634
||||||||||||
Sbjct: 141 catcaataactg 152
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189,296
Number of Sequences: 832831
Number of extensions: 189296
Number of successful extensions: 52048
Number of sequences better than 0.5: 104
Number of HSP's better than 0.5 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51886
Number of HSP's gapped (non-prelim): 162
length of query: 634
length of database: 491,359,669
effective HSP length: 19
effective length of query: 615
effective length of database: 475,535,880
effective search space: 292454566200
effective search space used: 292454566200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)