BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.8
(708 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE598329.1|BE598329 PI1_81_G08.g1_A002 Pathogen induced ... 553 e-156
gb|BE598670.1|BE598670 PI1_81_G08.b1_A002 Pathogen induced ... 553 e-156
gb|BE917631.1|BE917631 OV1_6_B05.g1_A002 Ovary 1 (OV1) Sorg... 553 e-156
gb|BE917708.1|BE917708 OV1_6_B05.b1_A002 Ovary 1 (OV1) Sorg... 553 e-156
gb|BI351376.1|BI351376 IP1_70_G08.b1_A002 Immature pannicle... 553 e-156
gb|BI643767.1|BI643767 IP1_56_G11.b1_A002 Immature pannicle... 553 e-156
gb|CD221265.1|CD221265 CCC1_74_G04.g1_A007 Callus culture/c... 553 e-156
gb|BG050559.1|BG050559 FM1_69_A05.b1_A003 Floral-Induced Me... 551 e-155
gb|CD430389.1|CD430389 ETH1_18_D03.g1_A002 Ethylene-treated... 541 e-152
gb|AW925081.1|AW925081 WS1_75_B10.b1_A002 Water-stressed 1 ... 537 e-151
gb|BF657438.1|BF657438 OV2_24_B07.b1_A002 Ovary 2 (OV2) Sor... 502 e-140
gb|CD221158.1|CD221158 CCC1_74_G04.b1_A007 Callus culture/c... 500 e-139
gb|BE593786.1|BE593786 WS1_102_B10.g1_A002 Water-stressed 1... 496 e-138
gb|BE594099.1|BE594099 WS1_102_B10.b1_A002 Water-stressed 1... 496 e-138
gb|BG050745.1|BG050745 FM1_70_A04.b1_A003 Floral-Induced Me... 484 e-135
gb|BG933158.1|BG933158 WS1_29_H08.b1_A002 Water-stressed 1 ... 482 e-134
gb|AW671475.1|AW671475 LG1_347_C08.b1_A002 Light Grown 1 (L... 466 e-129
gb|BF657366.1|BF657366 OV2_24_B07.g1_A002 Ovary 2 (OV2) Sor... 454 e-126
gb|BG050425.1|BG050425 FM1_69_A05.g1_A003 Floral-Induced Me... 448 e-124
gb|AW747681.1|AW747681 WS1_75_B10.g1_A002 Water-stressed 1 ... 418 e-115
gb|BG050487.1|BG050487 FM1_70_A04.g1_A003 Floral-Induced Me... 387 e-105
gb|BI351172.1|BI351172 IP1_70_G08.g1_A002 Immature pannicle... 321 5e-086
gb|CW230900.1|CW230900 104_680_11210841_148_37337_047 Sorgh... 274 1e-071
gb|CW429623.1|CW429623 fsbb001f142p19k0 Sorghum methylation... 206 2e-051
gb|CW364226.1|CW364226 fsbb001f036c19k0 Sorghum methylation... 194 8e-048
gb|BI141492.1|BI141492 IP1_56_G11.g1_A002 Immature pannicle... 194 8e-048
gb|CF771535.1|CF771535 DSBF1_20_G01.g1_A010 Drought-stresse... 153 3e-035
gb|AW923345.1|AW923345 DG1_51_G07.b1_A002 Dark Grown 1 (DG1... 127 1e-027
gb|AW924069.1|AW924069 WS1_49_H11.b1_A002 Water-stressed 1 ... 127 1e-027
gb|CD462226.1|CD462226 SA1_40_G07.b1_A002 Salicylic acid-tr... 127 1e-027
gb|CD462310.1|CD462310 SA1_40_G07.g1_A002 Salicylic acid-tr... 127 1e-027
gb|CF071260.1|CF071260 FE1_16_C11.b1_A002 Iron-deficient se... 127 1e-027
gb|CF071310.1|CF071310 FE1_16_C11.g1_A002 Iron-deficient se... 127 1e-027
gb|CF430120.1|CF430120 PH1_26_A07.b1_A002 Phosphorous-defic... 127 1e-027
gb|CF430172.1|CF430172 PH1_26_A07.g1_A002 Phosphorous-defic... 127 1e-027
gb|CX606135.1|CX606135 ANR1_1_G09.b1_A002 Anaerobic roots S... 127 1e-027
gb|CX606228.1|CX606228 ANR1_1_G09.g1_A002 Anaerobic roots S... 127 1e-027
gb|CX613695.1|CX613695 GABR1_9_E01.g1_A002 GA- or brassinol... 127 1e-027
gb|CF434229.1|CF434229 NIT1_29_D08.b1_A002 Nitrogen-deficie... 119 4e-025
gb|CN144192.1|CN144192 WOUND1_20_F01.g1_A002 Wounded leaves... 119 4e-025
gb|CD431246.1|CD431246 ETH1_7_D07.g1_A002 Ethylene-treated ... 117 1e-024
gb|AW746392.1|AW746392 WS1_49_H11.g1_A002 Water-stressed 1 ... 115 6e-024
gb|CD431124.1|CD431124 ETH1_7_D07.b1_A002 Ethylene-treated ... 115 6e-024
gb|AI724411.1|AI724411 RHIZ1_36_D03.y2_A001 Rhizome1 (RHIZ1... 111 9e-023
gb|CF434333.1|CF434333 NIT1_29_D08.g1_A002 Nitrogen-deficie... 109 4e-022
gb|CF071649.1|CF071649 FE1_17_D07.g1_A002 Iron-deficient se... 96 5e-018
gb|CF073841.1|CF073841 FE1_12_H01.g1_A002 Iron-deficient se... 96 5e-018
gb|CF073870.1|CF073870 FE1_12_B02.g1_A002 Iron-deficient se... 96 5e-018
gb|BE593214.1|BE593214 WS1_99_A01.g1_A002 Water-stressed 1 ... 88 1e-015
gb|AW746636.1|AW746636 WS1_54_B04.b1_A002 Water-stressed 1 ... 86 5e-015
gb|BE358653.1|BE358653 DG1_30_F11.g1_A002 Dark Grown 1 (DG1... 82 8e-014
gb|BZ366427.1|BZ366427 ic96h10.g1 WGS-SbicolorF (JM107 adap... 58 1e-006
gb|CW092300.1|CW092300 104_454_10999068_116_33041_036 Sorgh... 52 7e-005
gb|CW308818.1|CW308818 104_797_11468871_148_35725_058 Sorgh... 52 7e-005
gb|CW408142.1|CW408142 fsbb001f101o13f0 Sorghum methylation... 52 7e-005
gb|AW923420.1|AW923420 DG1_51_G07.g1_A002 Dark Grown 1 (DG1... 52 7e-005
gb|CW092299.1|CW092299 104_454_10999068_114_33037_036 Sorgh... 48 0.001
gb|BF506867.1|BF506867 10143P-19a Pooled green leaf and roo... 46 0.004
gb|BZ333122.1|BZ333122 hx32h12.b1 WGS-SbicolorF (JM107 adap... 42 0.068
>gb|BE598329.1|BE598329 PI1_81_G08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 553 bits (279), Expect = e-156
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 380 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 322
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 262
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 202
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 142
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 141 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 82
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 22
Score = 121 bits (61), Expect = 9e-026
Identities = 123/138 (89%), Gaps = 8/138 (5%)
Strand = Plus / Minus
Query: 127 tcgttctgaaaccaaccaggttttaacagcagacagtag-tttcactagaagtggacacc 185
||||||||||||||||||| ||||||| ||||||| ||| ||||||| |||||||||||
Sbjct: 596 tcgttctgaaaccaaccag-ttttaacggcagacaataggtttcactggaagtggacac- 539
Query: 186 acatcactttcttatgta--ggttaacataggacaggacgcatgactgacgggaagataa 243
|||||||||||||||| ||||||||||||||||||||||||| |||| || ||| ||
Sbjct: 538 --atcactttcttatgtataggttaacataggacaggacgcatgattgac-ggcagacaa 482
Query: 244 cacggaatgaacaccctc 261
|||||||| |||||||||
Sbjct: 481 cacggaattaacaccctc 464
>gb|BE598670.1|BE598670 PI1_81_G08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 553 bits (279), Expect = e-156
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 393 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 335
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 275
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 215
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 155
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 154 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 95
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 35
>gb|BE917631.1|BE917631 OV1_6_B05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 624
Score = 553 bits (279), Expect = e-156
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 399 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 341
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 340 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 281
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 280 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 221
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 161
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 160 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 101
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 41
Score = 153 bits (77), Expect = 3e-035
Identities = 132/146 (90%), Gaps = 7/146 (4%)
Strand = Plus / Minus
Query: 119 gaaaatcatcgttctgaaaccaaccaggttttaacagcagacagta-gtttcactagaag 177
||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||
Sbjct: 624 gaaaatcatcgttctgaaaccaaccaggttttaacggcagacaataggtttcactggaag 565
Query: 178 tggacaccacatcactttcttatg--taggttaacataggacaggacgcatgactgacgg 235
|||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct: 564 tgga---cacatcactttcttatgtataggttaacataggacaggacgcatgattgac-g 509
Query: 236 gaagataacacggaatgaacaccctc 261
| ||| |||||||||| |||||||||
Sbjct: 508 gcagacaacacggaattaacaccctc 483
>gb|BE917708.1|BE917708 OV1_6_B05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 554
Score = 553 bits (279), Expect = e-156
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 399 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 341
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 340 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 281
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 280 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 221
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 161
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 160 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 101
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 41
Score = 75.8 bits (38), Expect = 5e-012
Identities = 66/73 (90%), Gaps = 3/73 (4%)
Strand = Plus / Minus
Query: 191 actttcttatgta--ggttaacataggacaggacgcatgactgacgggaagataacacgg 248
||||||||||||| ||||||||||||||||||||||||| |||| || ||| |||||||
Sbjct: 554 actttcttatgtataggttaacataggacaggacgcatgattgac-ggcagacaacacgg 496
Query: 249 aatgaacaccctc 261
||| |||||||||
Sbjct: 495 aattaacaccctc 483
>gb|BI351376.1|BI351376 IP1_70_G08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 476
Score = 553 bits (279), Expect = e-156
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 393 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 335
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 275
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 215
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 155
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 154 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 95
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 35
>gb|BI643767.1|BI643767 IP1_56_G11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 553 bits (279), Expect = e-156
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 394 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 336
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 335 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 276
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 275 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 216
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 156
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 155 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 96
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 36
Score = 111 bits (56), Expect = 9e-023
Identities = 111/125 (88%), Gaps = 7/125 (5%)
Strand = Plus / Minus
Query: 140 aaccaggttttaacagcagacagtag-tttcactagaagtggacaccacatcactttctt 198
|||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct: 598 aaccaggttttaacggcagacaataggtttcactggaagtggacac---atcactttctt 542
Query: 199 atgta--ggttaacataggacaggacgcatgactgacgggaagataacacggaatgaaca 256
||||| ||||||||||||||||||||||||| |||| || ||| |||||||||| ||||
Sbjct: 541 atgtataggttaacataggacaggacgcatgattgac-ggcagacaacacggaattaaca 483
Query: 257 ccctc 261
|||||
Sbjct: 482 ccctc 478
>gb|CD221265.1|CD221265 CCC1_74_G04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_G04_A007 5', mRNA sequence
Length = 643
Score = 553 bits (279), Expect = e-156
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 400 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 342
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 341 atctgtcttcggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 282
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 281 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 222
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 162
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 161 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 102
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 42
Score = 145 bits (73), Expect = 6e-033
Identities = 131/146 (89%), Gaps = 7/146 (4%)
Strand = Plus / Minus
Query: 119 gaaaatcatcgttctgaaaccaaccaggttttaacagcagacagta-gtttcactagaag 177
||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||
Sbjct: 625 gaaaatcatcgttctgaaaccaaccaggttttaacggcagacaataggtttcactggaag 566
Query: 178 tggacaccacatcactttcttatg--taggttaacataggacaggacgcatgactgacgg 235
|||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 565 tgga---cacatcactttcttatgtataggttaacataggacaggacgcgtgattgac-g 510
Query: 236 gaagataacacggaatgaacaccctc 261
| ||| |||||||||| |||||||||
Sbjct: 509 gcagacaacacggaattaacaccctc 484
>gb|BG050559.1|BG050559 FM1_69_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 395
Score = 551 bits (278), Expect = e-155
Identities = 325/340 (95%), Gaps = 3/340 (0%)
Strand = Plus / Minus
Query: 323 aggcctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttgg 382
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct: 375 aggcttttcacttcttcagatgggggaagcactggtacacatctgtctttggatgcttag 316
Query: 383 cctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcaca 442
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 315 cctcggcatgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcata 256
Query: 443 ctttgcactggatgctcatggccttcttgttggtctcgagctggctccccttggccccct 502
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 255 ctttgcactggatgctcatggccttcttgttggtctcaagctggctccccttggacccct 196
Query: 503 tgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgccca 562
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 195 tgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttgccgccgccca 136
Query: 563 tggtggatggatccggcgacgatcga---cggcaggtacgcgcacctcgcccggcggccg 619
||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct: 135 tggtggatggacccggcgacgatcgatggcagcagctacgcgcacctcgcccggcggccg 76
Query: 620 gcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gcccgcgccgctccgcgttaggtttgtggttcacgggaag 36
>gb|CD430389.1|CD430389 ETH1_18_D03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_18_D03_A002 5', mRNA sequence
Length = 654
Score = 541 bits (273), Expect = e-152
Identities = 336/354 (94%), Gaps = 6/354 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 359 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 301
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 300 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 241
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 240 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 181
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 121
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 120 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 61
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcac 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcac 7
Score = 174 bits (88), Expect = 7e-042
Identities = 171/193 (88%), Gaps = 8/193 (4%)
Strand = Plus / Minus
Query: 72 atgcaaactggcccaactcccacggaccagtaatctgttttgcacacgaaaatcatcgtt 131
|||||||||||| ||| || |||||||||| ||||||||| | ||| |||||||||||||
Sbjct: 630 atgcaaactggcacaattctcacggaccagcaatctgtttgg-acatgaaaatcatcgtt 572
Query: 132 ctgaaaccaaccaggttttaacagcagacagta-gtttcactagaagtggacaccacatc 190
|||||||||||||||||| ||| ||||||| || |||||||| |||||||| ||||||
Sbjct: 571 ctgaaaccaaccaggtttaaacggcagacaataggtttcactggaagtgga---cacatc 515
Query: 191 actttcttatg--taggttaacataggacaggacgcatgactgacgggaagataacacgg 248
||||||||||| ||||||||||||||||||||||||||| |||| || ||| |||||||
Sbjct: 514 actttcttatgtataggttaacataggacaggacgcatgattgac-ggcagacaacacgg 456
Query: 249 aatgaacaccctc 261
||| |||||||||
Sbjct: 455 aattaacaccctc 443
>gb|AW925081.1|AW925081 WS1_75_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 537 bits (271), Expect = e-151
Identities = 334/352 (94%), Gaps = 6/352 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 359 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 301
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 300 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 241
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 240 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 181
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 121
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 120 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 61
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cgcacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttc 9
Score = 79.8 bits (40), Expect = 3e-013
Identities = 68/75 (90%), Gaps = 3/75 (4%)
Strand = Plus / Minus
Query: 189 tcactttcttatgta--ggttaacataggacaggacgcatgactgacgggaagataacac 246
||||||||||||||| ||||||||||||||||||||||||| |||| || ||| |||||
Sbjct: 516 tcactttcttatgtataggttaacataggacaggacgcatgattgac-ggcagacaacac 458
Query: 247 ggaatgaacaccctc 261
||||| |||||||||
Sbjct: 457 ggaattaacaccctc 443
>gb|BF657438.1|BF657438 OV2_24_B07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 331
Score = 502 bits (253), Expect = e-140
Identities = 300/315 (95%), Gaps = 3/315 (0%)
Strand = Plus / Minus
Query: 323 aggcctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttgg 382
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct: 321 aggcttttcacttcttcagatgggggaagcactggtacacatctgtctttggatgcttag 262
Query: 383 cctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcaca 442
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cctcggcatgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcata 202
Query: 443 ctttgcactggatgctcatggccttcttgttggtctcgagctggctccccttggccccct 502
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 201 ctttgcactggatgctcatggccttcttgttggtctcaagctggctccccttggacccct 142
Query: 503 tgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgccca 562
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 141 tgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttgccgccgccca 82
Query: 563 tggtggatggatccggcgacgatcga---cggcaggtacgcgcacctcgcccggcggccg 619
||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct: 81 tggtggatggacccggcgacgatcgatggcagcagctacgcgcacctcgcccggcggccg 22
Query: 620 gcccgcgccgctccg 634
|||||||||||||||
Sbjct: 21 gcccgcgccgctccg 7
>gb|CD221158.1|CD221158 CCC1_74_G04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_G04_A007 3', mRNA sequence
Length = 567
Score = 500 bits (252), Expect = e-139
Identities = 318/337 (94%), Gaps = 6/337 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 336 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 278
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 277 atctgtcttcggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 218
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 217 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 158
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 98
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 97 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 38
Query: 600 cgcacctcgcccggcggccggcccgcgccgctccgcg 636
|||||||||||||| ||||||||||||||||||||||
Sbjct: 37 cgcacctcgcccgggggccggcccgcgccgctccgcg 1
Score = 145 bits (73), Expect = 6e-033
Identities = 131/146 (89%), Gaps = 7/146 (4%)
Strand = Plus / Minus
Query: 119 gaaaatcatcgttctgaaaccaaccaggttttaacagcagacagta-gtttcactagaag 177
||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||
Sbjct: 561 gaaaatcatcgttctgaaaccaaccaggttttaacggcagacaataggtttcactggaag 502
Query: 178 tggacaccacatcactttcttatg--taggttaacataggacaggacgcatgactgacgg 235
|||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
Sbjct: 501 tgga---cacatcactttcttatgtataggttaacataggacaggacgcgtgattgac-g 446
Query: 236 gaagataacacggaatgaacaccctc 261
| ||| |||||||||| |||||||||
Sbjct: 445 gcagacaacacggaattaacaccctc 420
>gb|BE593786.1|BE593786 WS1_102_B10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 496 bits (250), Expect = e-138
Identities = 313/331 (94%), Gaps = 6/331 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 338 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 280
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 279 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 220
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 219 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 160
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 100
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 99 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 40
Query: 600 cgcacctcgcccggcggccggcccgcgccgc 630
|||||||||||||||||||||||||||||||
Sbjct: 39 cgcacctcgcccggcggccggcccgcgccgc 9
Score = 71.9 bits (36), Expect = 8e-011
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 202 taggttaacataggacaggacgcatgactgacgggaagataacacggaatgaacaccctc 261
||||||||||||||||||||||||||| |||| || ||| |||||||||| |||||||||
Sbjct: 480 taggttaacataggacaggacgcatgattgac-ggcagacaacacggaattaacaccctc 422
>gb|BE594099.1|BE594099 WS1_102_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 496 bits (250), Expect = e-138
Identities = 313/331 (94%), Gaps = 6/331 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 338 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 280
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 279 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 220
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 219 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 160
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 100
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 99 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 40
Query: 600 cgcacctcgcccggcggccggcccgcgccgc 630
|||||||||||||||||||||||||||||||
Sbjct: 39 cgcacctcgcccggcggccggcccgcgccgc 9
Score = 89.7 bits (45), Expect = 3e-016
Identities = 87/98 (88%), Gaps = 6/98 (6%)
Strand = Plus / Minus
Query: 166 tttcactagaagtggacaccacatcactttcttatgta--ggttaacataggacaggacg 223
||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 515 tttcactggaagtggacac---atcactttcttatgtataggttaacataggacaggacg 459
Query: 224 catgactgacgggaagataacacggaatgaacaccctc 261
||||| |||| || ||| |||||||||| |||||||||
Sbjct: 458 catgattgac-ggcagacaacacggaattaacaccctc 422
>gb|BG050745.1|BG050745 FM1_70_A04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 333
Score = 484 bits (244), Expect = e-135
Identities = 285/298 (95%), Gaps = 3/298 (1%)
Strand = Plus / Minus
Query: 365 ctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacaca 424
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtacaca 274
Query: 425 tgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagct 484
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 273 tgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaagct 214
Query: 485 ggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttct 544
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggacttct 154
Query: 545 ggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacgcg 601
|||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||||
Sbjct: 153 ggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacgcg 94
Query: 602 cacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 cacctcgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaag 36
>gb|BG933158.1|BG933158 WS1_29_H08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 526
Score = 482 bits (243), Expect = e-134
Identities = 306/324 (94%), Gaps = 6/324 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 323 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 265
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 205
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 145
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 85
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 84 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 25
Query: 600 cgcacctcgcccggcggccggccc 623
||||||||||||||||||||||||
Sbjct: 24 cgcacctcgcccggcggccggccc 1
Score = 101 bits (51), Expect = 9e-020
Identities = 109/124 (87%), Gaps = 7/124 (5%)
Strand = Plus / Minus
Query: 141 accaggttttaacagcagacagtag-tttcactagaagtggacaccacatcactttctta 199
||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||| |||||
Sbjct: 526 accaggttttaacggcagacaataggtttcactggaagtggacac---atcactctctta 470
Query: 200 tgta--ggttaacataggacaggacgcatgactgacgggaagataacacggaatgaacac 257
|||| ||||||||||||||||||||||||| |||| || ||| |||||||||| |||||
Sbjct: 469 tgtataggttaacataggacaggacgcatgattgac-ggcagacaacacggaattaacac 411
Query: 258 cctc 261
||||
Sbjct: 410 cctc 407
>gb|AW671475.1|AW671475 LG1_347_C08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 466 bits (235), Expect = e-129
Identities = 298/316 (94%), Gaps = 6/316 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 323 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 265
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 205
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 145
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 85
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacg 599
|||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||
Sbjct: 84 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacg 25
Query: 600 cgcacctcgcccggcg 615
||||||||||||||||
Sbjct: 24 cgcacctcgcccggcg 9
Score = 91.7 bits (46), Expect = 8e-017
Identities = 88/99 (88%), Gaps = 6/99 (6%)
Strand = Plus / Minus
Query: 165 gtttcactagaagtggacaccacatcactttcttatgta--ggttaacataggacaggac 222
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 501 gtttcactggaagtggacac---atcactttcttatgtataggttaacataggacaggac 445
Query: 223 gcatgactgacgggaagataacacggaatgaacaccctc 261
|||||| |||| || ||| |||||||||| |||||||||
Sbjct: 444 gcatgattgac-ggcagacaacacggaattaacaccctc 407
>gb|BF657366.1|BF657366 OV2_24_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 454 bits (229), Expect = e-126
Identities = 278/292 (95%), Gaps = 3/292 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 304 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 246
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 245 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 186
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 185 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 126
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 66
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcgacggcag 594
|||||||||||| |||||||||||||||||| |||||||||||||| |||||
Sbjct: 65 ctggccgttgccgccgcccatggtggatggacccggcgacgatcgatggcag 14
Score = 91.7 bits (46), Expect = 8e-017
Identities = 88/99 (88%), Gaps = 6/99 (6%)
Strand = Plus / Minus
Query: 165 gtttcactagaagtggacaccacatcactttcttatgta--ggttaacataggacaggac 222
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 482 gtttcactggaagtggacac---atcactttcttatgtataggttaacataggacaggac 426
Query: 223 gcatgactgacgggaagataacacggaatgaacaccctc 261
|||||| |||| || ||| |||||||||| |||||||||
Sbjct: 425 gcatgattgac-ggcagacaacacggaattaacaccctc 388
>gb|BG050425.1|BG050425 FM1_69_A05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 470
Score = 448 bits (226), Expect = e-124
Identities = 277/292 (94%), Gaps = 3/292 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 307 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 249
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 248 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 189
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 188 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 129
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 69
Query: 543 ctggccgttgccaccgcccatggtggatggatccggcgacgatcgacggcag 594
|||||||||||| |||||||||||||||||| || ||||||||||| |||||
Sbjct: 68 ctggccgttgccgccgcccatggtggatggacccngcgacgatcgatggcag 17
Score = 71.9 bits (36), Expect = 8e-011
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Minus
Query: 189 tcactttcttatgta--ggttaacataggacaggacgcatgactgacgggaagataacac 246
||||||||||||||| ||||||||||||||||||||||||| |||| || ||| ||||
Sbjct: 464 tcactttcttatgtataggttaacataggacaggacgcatgattgac-ggcagacgacac 406
Query: 247 ggaatgaacaccctc 261
||||| |||||||||
Sbjct: 405 ggaattaacaccctc 391
>gb|AW747681.1|AW747681 WS1_75_B10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 482
Score = 418 bits (211), Expect = e-115
Identities = 241/251 (96%)
Strand = Plus / Minus
Query: 323 aggcctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttgg 382
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 251 aggcttttcacttcttcagatgggggaagcactggtacacatctgtctttggatgcttaa 192
Query: 383 cctcggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcaca 442
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 191 cctcggcatgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcata 132
Query: 443 ctttgcactggatgctcatggccttcttgttggtctcgagctggctccccttggccccct 502
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 131 ctttgcactggatgctcatggccttcttgttggtctcaagctggctccccttggacccct 72
Query: 503 tgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgccca 562
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 71 tgttcttctccaagttgcgctcgcgggccatcttggacttctggccgttgccgccgccca 12
Query: 563 tggtggatgga 573
|||||||||||
Sbjct: 11 tggtggatgga 1
Score = 99.6 bits (50), Expect = 3e-019
Identities = 115/131 (87%), Gaps = 8/131 (6%)
Strand = Plus / Minus
Query: 135 aaaccaaccaggttttaacagcagacagtag-tttcactag-aagtggacaccacatcac 192
||||||||||||||||||| ||||||| ||| ||||||| | |||||||||| |||||
Sbjct: 480 aaaccaaccaggttttaacggcagacaataggtttcactgggaagtggacac---atcac 424
Query: 193 tttcttatgta--ggttaacataggacaggacgcatgactgacgggaagataacacggaa 250
||||||||||| || |||||||||||||||||||||| |||| || ||| |||||||||
Sbjct: 423 tttcttatgtatagggtaacataggacaggacgcatgattgac-ggcagacaacacggaa 365
Query: 251 tgaacaccctc 261
| |||||||||
Sbjct: 364 ttaacaccctc 354
>gb|BG050487.1|BG050487 FM1_70_A04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 420
Score = 387 bits (195), Expect = e-105
Identities = 235/246 (95%), Gaps = 3/246 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 245 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 187
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 186 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 127
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 126 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 67
Query: 483 ctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggactt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ctggctccccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggactt 7
Query: 543 ctggcc 548
||||||
Sbjct: 6 ctggcc 1
Score = 75.8 bits (38), Expect = 5e-012
Identities = 69/77 (89%), Gaps = 3/77 (3%)
Strand = Plus / Minus
Query: 187 catcactttcttatgta--ggttaacataggacaggacgcatgactgacgggaagataac 244
||||||||||||||||| ||||||||||||||||||||||||| |||| || ||| ||
Sbjct: 404 catcactttcttatgtataggttaacataggacaggacgcatgattgac-ggcagacgac 346
Query: 245 acggaatgaacaccctc 261
||||||| |||||||||
Sbjct: 345 acggaattaacaccctc 329
>gb|BI351172.1|BI351172 IP1_70_G08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 463
Score = 321 bits (162), Expect = 5e-086
Identities = 202/213 (94%), Gaps = 3/213 (1%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 212 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 154
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 153 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtggtaca 94
Query: 423 catgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgag 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 93 catgaatgtttgcatgcatactttgcactggatgctcatggccttcttgttggtctcaag 34
Query: 483 ctggctccccttggcccccttgttcttctccaa 515
|||||||||||||| ||||||||||||||||||
Sbjct: 33 ctggctccccttggaccccttgttcttctccaa 1
Score = 153 bits (77), Expect = 3e-035
Identities = 132/146 (90%), Gaps = 7/146 (4%)
Strand = Plus / Minus
Query: 119 gaaaatcatcgttctgaaaccaaccaggttttaacagcagacagta-gtttcactagaag 177
||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||
Sbjct: 437 gaaaatcatcgttctgaaaccaaccaggttttaacggcagacaataggtttcactggaag 378
Query: 178 tggacaccacatcactttcttatg--taggttaacataggacaggacgcatgactgacgg 235
|||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct: 377 tgga---cacatcactttcttatgtataggttaacataggacaggacgcatgattgac-g 322
Query: 236 gaagataacacggaatgaacaccctc 261
| ||| |||||||||| |||||||||
Sbjct: 321 gcagacaacacggaattaacaccctc 296
>gb|CW230900.1|CW230900 104_680_11210841_148_37337_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210841, DNA
sequence
Length = 715
Score = 274 bits (138), Expect = 1e-071
Identities = 164/172 (95%), Gaps = 3/172 (1%)
Strand = Plus / Minus
Query: 490 cccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 549
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cccttggaccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 113
Query: 550 ttgccaccgcccatggtggatggatccggcgacgatcga---cggcaggtacgcgcacct 606
||||| |||||||||||||||||| |||||||||||||| | |||| |||||||||||
Sbjct: 112 ttgccgccgcccatggtggatggacccggcgacgatcgatggcagcagctacgcgcacct 53
Query: 607 cgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 cgcccggcggccggcccgcgccgctccgcgttaggtttgtggttcacgggaa 1
Score = 75.8 bits (38), Expect = 5e-012
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccc 491
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 337 ctggatgctcatggccttcttgttggtctcaagctggctccc 296
>gb|CW429623.1|CW429623 fsbb001f142p19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142p19, DNA
sequence
Length = 749
Score = 206 bits (104), Expect = 2e-051
Identities = 141/151 (93%), Gaps = 3/151 (1%)
Strand = Plus / Plus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcactggtacac 362
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 576 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcactggtacac 634
Query: 363 gtctgtcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtaca 422
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct: 635 atctgtctttggatgcttagcctcggcatgctcccggcacttcacttcagtcgtgggaca 694
Query: 423 catgaatgtttgcatgcacactttgcactgg 453
|||||||||||||||||| ||||||||||||
Sbjct: 695 catgaatgtttgcatgcatactttgcactgg 725
Score = 194 bits (98), Expect = 8e-048
Identities = 211/242 (87%), Gaps = 10/242 (4%)
Strand = Plus / Plus
Query: 23 gtatttgcaaaggaattcttgcgctgggcaggaggcacatactaagacaatgcaaactgg 82
||||||||||||| |||||||| ||| |||||| ||||| | ||| |||||||||||
Sbjct: 258 gtatttgcaaagggattcttgcaatggccaggag--acatatttagaacatgcaaactgg 315
Query: 83 cccaactcccacggaccagtaatctgttttgcacacgaaaatcatcgttctgaaaccaac 142
| ||| || |||||||||| ||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 316 cacaattctcacggaccagcaatctgtttgg-acatgaaaatcatcgttctgaaaccaac 374
Query: 143 caggttttaacagcagacagta-gtttcactagaagtggacaccacatcactttcttatg 201
||||||||||| ||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 375 caggttttaacggcagacaataggtttcactggaagtgga---cacatcactttcttatg 431
Query: 202 --taggttaacataggacaggacgcatgactgacgggaagataacacggaatgaacaccc 259
||||||||||||||||||||||||||| |||| || ||| |||||||||| |||||||
Sbjct: 432 tataggttaacataggacaggacgcatgattgac-ggcagacaacacggaattaacaccc 490
Query: 260 tc 261
||
Sbjct: 491 tc 492
>gb|CW364226.1|CW364226 fsbb001f036c19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036c19, DNA
sequence
Length = 729
Score = 194 bits (98), Expect = 8e-048
Identities = 211/242 (87%), Gaps = 10/242 (4%)
Strand = Plus / Minus
Query: 23 gtatttgcaaaggaattcttgcgctgggcaggaggcacatactaagacaatgcaaactgg 82
||||||||||||| |||||||| ||| |||||| ||||| | ||| |||||||||||
Sbjct: 300 gtatttgcaaagggattcttgcaatggccaggag--acatatttagaacatgcaaactgg 243
Query: 83 cccaactcccacggaccagtaatctgttttgcacacgaaaatcatcgttctgaaaccaac 142
| ||| || |||||||||| ||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 242 cacaattctcacggaccagcaatctgtttgg-acatgaaaatcatcgttctgaaaccaac 184
Query: 143 caggttttaacagcagacagta-gtttcactagaagtggacaccacatcactttcttatg 201
||||||||||| ||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 183 caggttttaacggcagacaataggtttcactggaagtgga---cacatcactttcttatg 127
Query: 202 --taggttaacataggacaggacgcatgactgacgggaagataacacggaatgaacaccc 259
||||||||||||||||||||||||||| |||| || ||| |||||||||| |||||||
Sbjct: 126 tataggttaacataggacaggacgcatgattgac-ggcagacaacacggaattaacaccc 68
Query: 260 tc 261
||
Sbjct: 67 tc 66
>gb|BI141492.1|BI141492 IP1_56_G11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 194 bits (98), Expect = 8e-048
Identities = 211/242 (87%), Gaps = 10/242 (4%)
Strand = Plus / Minus
Query: 23 gtatttgcaaaggaattcttgcgctgggcaggaggcacatactaagacaatgcaaactgg 82
||||||||||||| |||||||| ||| |||||| ||||| | ||| |||||||||||
Sbjct: 358 gtatttgcaaagggattcttgcaatggccaggag--acatatttagaacatgcaaactgg 301
Query: 83 cccaactcccacggaccagtaatctgttttgcacacgaaaatcatcgttctgaaaccaac 142
| ||| || |||||||||| ||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 300 cacaattctcacggaccagcaatctgtttgg-acatgaaaatcatcgttctgaaaccaac 242
Query: 143 caggttttaacagcagacagta-gtttcactagaagtggacaccacatcactttcttatg 201
||||||||||| ||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 241 caggttttaacggcagacaataggtttcactggaagtgga---cacatcactttcttatg 185
Query: 202 --taggttaacataggacaggacgcatgactgacgggaagataacacggaatgaacaccc 259
||||||||||||||||||||||||||| |||| || ||| |||||||||| |||||||
Sbjct: 184 tataggttaacataggacaggacgcatgattgac-ggcagacaacacggaattaacaccc 126
Query: 260 tc 261
||
Sbjct: 125 tc 124
>gb|CF771535.1|CF771535 DSBF1_20_G01.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_G01_A010 3', mRNA sequence
Length = 318
Score = 153 bits (77), Expect = 3e-035
Identities = 169/193 (87%), Gaps = 10/193 (5%)
Strand = Plus / Minus
Query: 72 atgcaaactggcccaactcccacggaccagtaatctgttttgcacacgaaaatcatcgtt 131
|||||||||||| ||| || |||||||||| ||||||||| | ||| |||||||||||||
Sbjct: 314 atgcaaactggcacaattctcacggaccagcaatctgtttgg-acatgaaaatcatcgtt 256
Query: 132 ctgaaaccaaccaggttttaacagcagacagta-gtttcactagaagtggacaccacatc 190
|||||||||||||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct: 255 ctgaaaccaaccaggttttaacagcagacaataggtttcactggaagtgga---cacat- 200
Query: 191 actttcttatg--taggttaacataggacaggacgcatgactgacgggaagataacacgg 248
||||||||| ||||||||||||||||||||||||||| || | || ||| |||||||
Sbjct: 199 -atttcttatgtataggttaacataggacaggacgcatgattggc-ggtagacaacacgg 142
Query: 249 aatgaacaccctc 261
||| |||||||||
Sbjct: 141 aattaacaccctc 129
>gb|AW923345.1|AW923345 DG1_51_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 338 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 279
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 278 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 219
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 218 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 159
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 158 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 107
>gb|AW924069.1|AW924069 WS1_49_H11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 590
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 309 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 250
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 249 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 190
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 189 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 130
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 129 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 78
>gb|CD462226.1|CD462226 SA1_40_G07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_G07_A002 3', mRNA sequence
Length = 529
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 263 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 204
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 203 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 144
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 143 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 84
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 83 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 32
>gb|CD462310.1|CD462310 SA1_40_G07.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_G07_A002 5', mRNA sequence
Length = 545
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 252 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 193
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 192 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 133
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 132 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 73
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 72 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 21
>gb|CF071260.1|CF071260 FE1_16_C11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_C11_A002 3', mRNA sequence
Length = 666
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 336 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 395
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 396 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 455
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 456 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 515
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 516 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 567
>gb|CF071310.1|CF071310 FE1_16_C11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_C11_A002 5', mRNA sequence
Length = 623
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 294 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 353
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 354 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 413
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 414 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 473
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 474 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 525
>gb|CF430120.1|CF430120 PH1_26_A07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_26_A07_A002 3', mRNA sequence
Length = 675
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 323 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 382
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 383 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 442
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 443 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 502
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 503 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 554
>gb|CF430172.1|CF430172 PH1_26_A07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_26_A07_A002 5', mRNA sequence
Length = 652
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 327 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 386
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 387 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 446
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 447 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 506
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 507 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 558
>gb|CX606135.1|CX606135 ANR1_1_G09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_G09_A002 3', mRNA sequence
Length = 578
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 315 ttcttgaggtgggggaagcactggtaaaggtcattcttgggatgcctcgcctcggcatgc 256
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 255 tctttgcacttggcctcagaggtggtgcaaataaaagtctgcatacagatcttgcactgg 196
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 195 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 136
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 135 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 84
>gb|CX606228.1|CX606228 ANR1_1_G09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_G09_A002 5', mRNA sequence
Length = 608
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 307 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 248
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 247 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 188
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 187 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 128
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 127 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 76
>gb|CX613695.1|CX613695 GABR1_9_E01.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_E01_A002 5', mRNA sequence
Length = 543
Score = 127 bits (64), Expect = 1e-027
Identities = 190/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 254 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 195
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 194 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 135
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 134 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 75
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 74 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 23
>gb|CF434229.1|CF434229 NIT1_29_D08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_29_D08_A002 3', mRNA sequence
Length = 676
Score = 119 bits (60), Expect = 4e-025
Identities = 189/232 (81%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 324 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 383
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| ||| || | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 384 tctttgcagttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 443
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 444 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 503
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 504 gcgttcctctcccgcgccatcttggacttctggccgttgccgccgcccatgg 555
>gb|CN144192.1|CN144192 WOUND1_20_F01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_20_F01_A002 5', mRNA sequence
Length = 579
Score = 119 bits (60), Expect = 4e-025
Identities = 189/232 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 307 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 248
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 247 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 188
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 187 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 128
Query: 514 aagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
||| | ||| || |||||||||||||||||||||| ||| ||||||||||
Sbjct: 127 gcgttcctctcccgcgccatcttggacttctggccgtagccgccgcccatgg 76
>gb|CD431246.1|CD431246 ETH1_7_D07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_7_D07_A002 5', mRNA sequence
Length = 168
Score = 117 bits (59), Expect = 1e-024
Identities = 120/138 (86%), Gaps = 3/138 (2%)
Strand = Plus / Minus
Query: 24 tatttgcaaaggaattcttgcgctgggcaggaggcacatactaagacaatgcaaactggc 83
|||||||||||| |||||||| ||| |||||| ||||| | ||| ||||||||||||
Sbjct: 151 tatttgcaaagggattcttgcaatggccaggag--acatatttagaacatgcaaactggc 94
Query: 84 ccaactcccacggaccagtaatctgttttgcacacgaaaatcatcgttctgaaaccaacc 143
||| || |||||||||| ||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 93 acaattctcacggaccagcaatctgtttgg-acatgaaaatcatcgttctgaaaccaacc 35
Query: 144 aggttttaacagcagaca 161
|||||||||| |||||||
Sbjct: 34 aggttttaacggcagaca 17
>gb|AW746392.1|AW746392 WS1_49_H11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 115 bits (58), Expect = 6e-024
Identities = 181/222 (81%)
Strand = Plus / Minus
Query: 344 gggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgctcccggcact 403
|||||||||||||||| | ||| ||||||||||| | |||||||| ||||| |||||
Sbjct: 258 gggggaagcactggtaaaggtcattcttgggatgcctcgcctcggcatgctctttgcact 199
Query: 404 tcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactggatgctcatgg 463
| | ||| ||||| || || || || ||||| || | |||||||||||| ||||||
Sbjct: 198 tggcctcaaaggtggtgcaaataaaagtctgcatacaaatcttgcactggatgttcatgg 139
Query: 464 ccttcttgttggtctcgagctggctccccttggcccccttgttcttctccaagttgcgct 523
|||||||||| ||||| ||||| || || |||| |||||||||||||| ||| | ||
Sbjct: 138 ccttcttgtttgtctccagctgactgcctttggaacccttgttcttctcggcgttcctct 79
Query: 524 cgcgggccatcttggacttctggccgttgccaccgcccatgg 565
| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 78 cccgcgccatcttggacttctggccgttgccgccgcccatgg 37
>gb|CD431124.1|CD431124 ETH1_7_D07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_7_D07_A002 3', mRNA sequence
Length = 152
Score = 115 bits (58), Expect = 6e-024
Identities = 132/153 (86%), Gaps = 4/153 (2%)
Strand = Plus / Minus
Query: 26 tttgcaaaggaattcttgcgctgggcaggaggcacatactaagacaatgcaaactggccc 85
|||||||||| |||||||| ||| |||||| ||||| | ||| |||||||||||| |
Sbjct: 150 tttgcaaagggattcttgcaatggccaggag--acatatttagaacatgcaaactggcac 93
Query: 86 aactcccacggaccagtaatctgttttgcacacgaaaatcatcgttctgaaaccaaccag 145
|| || |||||||||| ||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 92 aattctcacggaccagcaatctgtttgg-acatgaaaatcatcgttctgaaaccaaccag 34
Query: 146 gttttaacagcagacagta-gtttcactagaag 177
|||||||| ||||||| || |||||||| ||||
Sbjct: 33 gttttaacggcagacaataggtttcactggaag 1
>gb|AI724411.1|AI724411 RHIZ1_36_D03.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 492
Score = 111 bits (56), Expect = 9e-023
Identities = 173/212 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 212 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 153
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || ||||| || ||||| || | |||||||||
Sbjct: 152 tctttgcacttggcctcagaggtggtgcagatgaaagtctgcatacagatcttgcactgg 93
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||||||||| ||||| || || |||| ||||||||||||||
Sbjct: 92 atgttcatggccttcttgttggtctccagctgactgcctttggagcccttgttcttctcg 33
Query: 514 aagttgcgctcgcgggccatcttggacttctg 545
||| | ||| || |||||||||||||||||
Sbjct: 32 gcgttcctctcccgcgccatcttggacttctg 1
>gb|CF434333.1|CF434333 NIT1_29_D08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_29_D08_A002 5', mRNA sequence
Length = 662
Score = 109 bits (55), Expect = 4e-022
Identities = 181/223 (81%)
Strand = Plus / Plus
Query: 343 tgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgctcccggcac 402
||||||||||||||||| | ||| ||||||||||| | |||||||| ||||| ||||
Sbjct: 388 tgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgctctttgcac 447
Query: 403 ttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactggatgctcatg 462
|| | |||| ||||| || || || || ||||| || | |||||||||| | |||||
Sbjct: 448 ttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactggaagttcatg 507
Query: 463 gccttcttgttggtctcgagctggctccccttggcccccttgttcttctccaagttgcgc 522
||||||||||| ||||| ||||| || || |||| |||||||| ||||| ||| | |
Sbjct: 508 gccttcttgtttgtctccagctgactgcctttggagcccttgtttttctcggcgttcctc 567
Query: 523 tcgcgggccatcttggacttctggccgttgccaccgcccatgg 565
|| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 568 tcccgcgccatcttggacttctggccgttgccgccgcccatgg 610
>gb|CF071649.1|CF071649 FE1_17_D07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_17_D07_A002 5', mRNA sequence
Length = 645
Score = 95.6 bits (48), Expect = 5e-018
Identities = 174/216 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 301 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 360
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| | || || || ||||| || | |||||||||
Sbjct: 361 tctttgcacttggcctcagaggtggtgcggataaaagtctgcatacagatcttgcactgg 420
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 421 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 480
Query: 514 aagttgcgctcgcgggccatcttggacttctggccg 549
||| | ||| || |||||||||||||||||||||
Sbjct: 481 gcgttcctctcccgcgccatcttggacttctggccg 516
>gb|CF073841.1|CF073841 FE1_12_H01.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_12_H01_A002 5', mRNA sequence
Length = 619
Score = 95.6 bits (48), Expect = 5e-018
Identities = 171/212 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 310 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 369
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 370 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 429
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 430 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 489
Query: 514 aagttgcgctcgcgggccatcttggacttctg 545
||| | ||| || |||||||||||||||||
Sbjct: 490 gcgttcctctcccgcgccatcttggacttctg 521
>gb|CF073870.1|CF073870 FE1_12_B02.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_12_B02_A002 5', mRNA sequence
Length = 527
Score = 95.6 bits (48), Expect = 5e-018
Identities = 171/212 (80%)
Strand = Plus / Plus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 307 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 366
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 367 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 426
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctcc 513
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 427 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctcg 486
Query: 514 aagttgcgctcgcgggccatcttggacttctg 545
||| | ||| || |||||||||||||||||
Sbjct: 487 gcgttcctctcccgcgccatcttggacttctg 518
>gb|BE593214.1|BE593214 WS1_99_A01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 639
Score = 87.7 bits (44), Expect = 1e-015
Identities = 72/79 (91%), Gaps = 3/79 (3%)
Strand = Plus / Minus
Query: 185 cacatcactttcttatgta--ggttaacataggacaggacgcatgactgacgggaagata 242
||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||| |
Sbjct: 628 cacatcactttcttatgtataggttaacataggacaggacgcatgattgac-ggcagaca 570
Query: 243 acacggaatgaacaccctc 261
||||||||| |||||||||
Sbjct: 569 acacggaattaacaccctc 551
Score = 58.0 bits (29), Expect = 1e-006
Identities = 48/52 (92%), Gaps = 3/52 (5%)
Strand = Plus / Minus
Query: 305 gcactggttgctaagttcag--gcctttcacttcttcagatgggggaagcac 354
||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 467 gcactggttgcta-gttcagaggcttttcacttcttcagatgggggaagcac 417
>gb|AW746636.1|AW746636 WS1_54_B04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 85.7 bits (43), Expect = 5e-015
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 334 ttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctcggcgtgc 393
||||| || ||||||||||||||||| | ||| ||||||||||| | |||||||| |||
Sbjct: 195 ttcttgaggtgggggaagcactggtagaggtcattcttgggatgcctcgcctcggcatgc 136
Query: 394 tcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacactttgcactgg 453
|| |||||| | |||| ||||| || || || || ||||| || | |||||||||
Sbjct: 135 tctttgcacttggcctcagaggtggtgcagataaaagtctgcatacagatcttgcactgg 76
Query: 454 atgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttcttctc 512
||| |||||||||||||||| ||||| ||||| || || |||| ||||||||||||||
Sbjct: 75 atgttcatggccttcttgtttgtctccagctgactgcctttggagcccttgttcttctc 17
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 179,706
Number of Sequences: 832831
Number of extensions: 179706
Number of successful extensions: 47734
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47511
Number of HSP's gapped (non-prelim): 107
length of query: 708
length of database: 491,359,669
effective HSP length: 20
effective length of query: 688
effective length of database: 474,703,049
effective search space: 326595697712
effective search space used: 326595697712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)