BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum ... 1066 0.0
gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/ce... 775 0.0
gb|BF421433.1|BF421433 FM1_8_F10.b1_A003 Floral-Induced Mer... 507 e-142
gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sor... 272 4e-071
gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/ce... 254 1e-065
gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Mer... 246 2e-063
gb|CW083677.1|CW083677 104_426_10945316_116_32439_080 Sorgh... 190 1e-046
gb|CW041428.1|CW041428 104_274_10506544_116_30434 Sorghum m... 182 3e-044
gb|CW041429.1|CW041429 104_274_10506544_116_30484 Sorghum m... 182 3e-044
gb|CW272374.1|CW272374 104_744_11403400_116_36228_054 Sorgh... 182 3e-044
gb|CW272375.1|CW272375 104_744_11403400_148_36227_054 Sorgh... 176 2e-042
gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorgh... 139 4e-031
gb|CW382183.1|CW382183 fsbb001f063p06k0 Sorghum methylation... 139 4e-031
gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Me... 121 9e-026
gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorgh... 117 1e-024
gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) So... 117 1e-024
gb|BI140650.1|BI140650 IP1_52_A07.b1_A002 Immature pannicle... 101 9e-020
gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Me... 100 3e-019
gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stres... 100 3e-019
gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Me... 88 1e-015
gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sor... 88 1e-015
gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) So... 88 1e-015
gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle... 88 1e-015
gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum b... 88 1e-015
gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stres... 88 1e-015
gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum ... 88 1e-015
gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Me... 86 5e-015
gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stresse... 86 5e-015
gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2... 80 3e-013
gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle... 80 3e-013
gb|BI074812.1|BI074812 IP1_16_G03.b1_A002 Immature pannicle... 76 5e-012
gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2... 70 3e-010
gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum b... 70 3e-010
gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation... 68 1e-009
gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Me... 68 1e-009
gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2... 68 1e-009
gb|BM324187.1|BM324187 PIC1_25_D06.b1_A002 Pathogen-infecte... 62 7e-008
gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1... 54 2e-005
gb|CF485311.1|CF485311 POL1_30_F05.g1_A002 Pollen Sorghum b... 54 2e-005
gb|BZ336052.1|BZ336052 hz28d11.b1 WGS-SbicolorF (JM107 adap... 50 3e-004
gb|CW066457.1|CW066457 104_313_10523697_114_30148 Sorghum m... 50 3e-004
gb|CW257089.1|CW257089 104_722_11227151_148_35148_090 Sorgh... 50 3e-004
gb|CW288849.1|CW288849 104_767_11412169_148_35539_007 Sorgh... 50 3e-004
gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorgh... 46 0.004
gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sor... 46 0.004
gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2... 44 0.017
gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2... 44 0.017
gb|BZ336053.1|BZ336053 hz28d11.g1 WGS-SbicolorF (JM107 adap... 42 0.069
gb|CL187585.1|CL187585 104_403_10900988_114_32462_076 Sorgh... 42 0.069
gb|CW051010.1|CW051010 104_291_10514996_114_30192 Sorghum m... 42 0.069
gb|CW061656.1|CW061656 104_305_10520518_114_30152 Sorghum m... 42 0.069
gb|CW061657.1|CW061657 104_305_10520518_115_30153 Sorghum m... 42 0.069
gb|CW288848.1|CW288848 104_767_11412169_116_35543_007 Sorgh... 42 0.069
gb|BF655982.1|BF655982 FM1_42_D11.b1_A003 Floral-Induced Me... 42 0.069
gb|BG412718.1|BG412718 OV2_33_H08.b1_A002 Ovary 2 (OV2) Sor... 42 0.069
gb|CW081756.1|CW081756 104_421_10942771_114_32308_066 Sorgh... 40 0.27
gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infecte... 40 0.27
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 40 0.27
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 40 0.27
gb|CW102128.1|CW102128 104_470_11011172_148_34413_076 Sorgh... 38 1.1
gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Me... 38 1.1
gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Me... 38 1.1
gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Me... 38 1.1
gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) So... 38 1.1
gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle... 38 1.1
gb|BZ780104.1|BZ780104 ii37c09.b1 WGS-SbicolorF (DH5a methy... 36 4.3
gb|CL175719.1|CL175719 104_381_10892640_148_31764_240 Sorgh... 36 4.3
gb|CL188884.1|CL188884 104_405_10901898_114_32453_069 Sorgh... 36 4.3
gb|CL188885.1|CL188885 104_405_10901898_116_32457_069 Sorgh... 36 4.3
gb|CW034441.1|CW034441 104_264_10502549_114_30358 Sorghum m... 36 4.3
gb|CW119243.1|CW119243 104_496_11108659_116_34636_078 Sorgh... 36 4.3
gb|CW210449.1|CW210449 104_640_11189800_148_36999_050 Sorgh... 36 4.3
gb|CW227618.1|CW227618 104_667_11205904_148_37241_062 Sorgh... 36 4.3
gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorgh... 36 4.3
gb|CW265821.1|CW265821 104_735_11232092_148_35268_076 Sorgh... 36 4.3
gb|CW266023.1|CW266023 104_735_11232204_116_35270_038 Sorgh... 36 4.3
gb|CW376483.1|CW376483 fsbb001f054g08f0 Sorghum methylation... 36 4.3
gb|CW407933.1|CW407933 fsbb001f101j19f0 Sorghum methylation... 36 4.3
gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation... 36 4.3
gb|CW465022.1|CW465022 fsbb001f215j07k0 Sorghum methylation... 36 4.3
gb|CW471475.1|CW471475 fsbb001f225g13f0 Sorghum methylation... 36 4.3
gb|BG053773.1|BG053773 RHIZ2_9_F01.b1_A003 Rhizome2 (RHIZ2)... 36 4.3
gb|BG102295.1|BG102295 RHIZ2_24_E08.b1_A003 Rhizome2 (RHIZ2... 36 4.3
gb|BG947240.1|BG947240 IP1_3_B12.b1_A002 Immature pannicle ... 36 4.3
gb|CN128984.1|CN128984 RHOH1_32_G05.g1_A002 Acid- and alkal... 36 4.3
gb|CN138234.1|CN138234 OX1_62_C02.g1_A002 Oxidatively-stres... 36 4.3
>gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1523
Score = 1066 bits (538), Expect = 0.0
Identities = 670/714 (93%)
Strand = Plus / Minus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1221 gtacctgcttaatttgctgatgaagattaatgcaaagcttggtggtctgaattcgttgct 1162
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatcttagg 120
|||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| ||
Sbjct: 1161 gcaagttgaagcatctccatcaataccccatgtgtcggaagtacccaccatcatcttggg 1102
Query: 121 tatggatgtttcacatggtcatccaggacaagatagaccttcggttgcagcggtggttag 180
||||||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 1101 tatggatgtgtctcatggccatccaggacaagataggccttcagttgcagccgtggttag 1042
Query: 181 ttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatctgccag 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 1041 ttctcgtcaatggcctcttatctctaaatatagagcatcagtgcacacccaatccgccag 982
Query: 241 actagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctcatccg 300
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 981 actagaaatgatgtcctccttgtttaagccacggggtactgatgatgatggcctcattag 922
Query: 301 ggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacataattat 360
|||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||
Sbjct: 921 ggaatcactgattgacttctacactagctctggcaagcgaaaaccagaccacattatcat 862
Query: 361 tttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 861 tttcagggatggagtcagcgaaagtcagtttacccaggtcatcaacattgaactggatca 802
Query: 421 gatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgt 480
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 gataattgaggcatgtaagtttcttgatgagaagtggtcacccaagttcactgtgattgt 742
Query: 481 tgctcaaaagaaccaccacaccaagttctttcagacggcatcaccagacaatgttcttcc 540
||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct: 741 tgctcaaaagaaccaccacaccaagttttttcagaccggatcaccagacaatgttcttcc 682
Query: 541 tggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgc 600
|||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 cggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgc 622
Query: 601 acatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgagat 660
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 621 acatgctgggatgattggaacaacaaggccgacccattatcatgttctgcacgatgagat 562
Query: 661 aggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgta 714
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 561 aggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgta 508
>gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 5', mRNA sequence
Length = 599
Score = 775 bits (391), Expect = 0.0
Identities = 478/507 (94%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 88 gtacctgcttaatttgctgatgaagattaatgcaaagcttggtggtctgaattcgttgct 147
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatcttagg 120
|||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| ||
Sbjct: 148 gcaagttgaagcatctccatcaataccccatgtgtcggaagtacccaccatcatcttggg 207
Query: 121 tatggatgtttcacatggtcatccaggacaagatagaccttcggttgcagcggtggttag 180
||||||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 208 tatggatgtgtctcatggccatccaggacaagataggccttcagttgcagccgtggttag 267
Query: 181 ttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatctgccag 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 268 ttctcgtcaatggcctcttatctctaaatatagagcatcagtgcacacccaatccgccag 327
Query: 241 actagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctcatccg 300
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 328 actagaaatgatgtcctccttgtttaagccacggggtactgatgatgatggcctcattag 387
Query: 301 ggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacataattat 360
|||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||
Sbjct: 388 ggaatcactgattgacttctacactagctctggcaagcgaaaaccagaccacattatcat 447
Query: 361 tttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 448 tttcagggatggagtcagcgaaagtcagtttacccaggtcatcaacattgaactggatca 507
Query: 421 gatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgt 480
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 508 gataattgaggcatgtaagtttcttgatgagaagtggtcacccaagttcactgtgattgt 567
Query: 481 tgctcaaaagaaccaccacaccaagtt 507
|||||||||||||||||||||||||||
Sbjct: 568 tgctcaaaagaaccaccacaccaagtt 594
>gb|BF421433.1|BF421433 FM1_8_F10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 557
Score = 507 bits (256), Expect = e-142
Identities = 319/340 (93%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 218 gtacctgcttaatttgctgatgaagattaatgcaaagcttggtggtctgaattcgttgct 277
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatcttagg 120
|||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| ||
Sbjct: 278 gcaagttgaagcatctccatcaataccccatgtgtcggaagtacccaccatcatcttggg 337
Query: 121 tatggatgtttcacatggtcatccaggacaagatagaccttcggttgcagcggtggttag 180
||||||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 338 tatggatgtgtctcatggccatccaggacaagataggccttcagttgcagccgtggttag 397
Query: 181 ttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatctgccag 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 398 ttctcgtcaatggcctcttatctctaaatatagagcatcagtgcacacccaatccgccag 457
Query: 241 actagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctcatccg 300
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 458 actagaaatgatgtcctccttgtttaagccacggggtactgatgatgatggcctcattag 517
Query: 301 ggaatcactgatcgacttctacactagctctggaaagcga 340
|||||||||||| |||||||||||||||||||| ||||||
Sbjct: 518 ggaatcactgattgacttctacactagctctggcaagcga 557
>gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 272 bits (137), Expect = 4e-071
Identities = 173/185 (93%)
Strand = Plus / Plus
Query: 530 aatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttc 589
||||||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||
Sbjct: 1 aatgttcttcccggaactgtcgtggacaataaagtttgccatcctaagaactttgacttc 60
Query: 590 tacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctg 649
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 61 tacatgtgtgcacatgctgggatgattggaacaacaaggccgacccattatcatgttctg 120
Query: 650 cacgacgagataggtttctctgcagacgagatgcaggagtttgttcattcgctatcttac 709
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 121 cacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttat 180
Query: 710 gtgta 714
|||||
Sbjct: 181 gtgta 185
>gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 3', mRNA sequence
Length = 638
Score = 254 bits (128), Expect = 1e-065
Identities = 149/156 (95%)
Strand = Plus / Plus
Query: 559 taaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2 taaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctgggatgattgg 61
Query: 619 aacaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagacga 678
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 62 aacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgacga 121
Query: 679 gatgcaggagtttgttcattcgctatcttacgtgta 714
||||||||||||||||||||||| |||||||||||
Sbjct: 122 aatgcaggagtttgttcattcgctctcttacgtgta 157
>gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 246 bits (124), Expect = 2e-063
Identities = 148/156 (94%)
Strand = Plus / Plus
Query: 559 taaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12 taaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctgggatgattgg 71
Query: 619 aacaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagacga 678
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 72 aacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgacga 131
Query: 679 gatgcaggagtttgttcattcgctatcttacgtgta 714
||||||||||||||||||||||| ||||| |||||
Sbjct: 132 aatgcaggagtttgttcattcgctctcttatgtgta 167
>gb|CW083677.1|CW083677 104_426_10945316_116_32439_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945316, DNA
sequence
Length = 425
Score = 190 bits (96), Expect = 1e-046
Identities = 108/112 (96%)
Strand = Plus / Plus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 aggcatgtaagtttcttgatgagaagtggtcacccaagttcactgtgattgttgctcaaa 78
Query: 489 agaaccaccacaccaagttctttcagacggcatcaccagacaatgttcttcc 540
||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct: 79 agaaccaccacaccaagttttttcagaccggatcaccagacaatgttcttcc 130
Score = 119 bits (60), Expect = 4e-025
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 542 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 601
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 233 ggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgca 292
Query: 602 catgctgggatgattg 617
||||||||||||||||
Sbjct: 293 catgctgggatgattg 308
>gb|CW041428.1|CW041428 104_274_10506544_116_30434 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 715
Score = 182 bits (92), Expect = 3e-044
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 433 atgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaa 492
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtaagtttcttgatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaa 60
Query: 493 ccaccacaccaagttctttcagacggcatcaccagacaatgttcttcc 540
||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct: 61 ccaccacaccaagttttttcagaccggatcaccagacaatgttcttcc 108
Score = 139 bits (70), Expect = 4e-031
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagac 676
|||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 406 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 465
Query: 677 gagatgcaggagtttgttcattcgctatcttacgtgta 714
|| ||||||||||||||||||||||| ||||| |||||
Sbjct: 466 gaaatgcaggagtttgttcattcgctctcttatgtgta 503
Score = 119 bits (60), Expect = 4e-025
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 542 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 601
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 211 ggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgca 270
Query: 602 catgctgggatgattg 617
||||||||||||||||
Sbjct: 271 catgctgggatgattg 286
>gb|CW041429.1|CW041429 104_274_10506544_116_30484 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 679
Score = 182 bits (92), Expect = 3e-044
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 433 atgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaa 492
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtaagtttcttgatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaa 60
Query: 493 ccaccacaccaagttctttcagacggcatcaccagacaatgttcttcc 540
||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct: 61 ccaccacaccaagttttttcagaccggatcaccagacaatgttcttcc 108
Score = 139 bits (70), Expect = 4e-031
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagac 676
|||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 406 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 465
Query: 677 gagatgcaggagtttgttcattcgctatcttacgtgta 714
|| ||||||||||||||||||||||| ||||| |||||
Sbjct: 466 gaaatgcaggagtttgttcattcgctctcttatgtgta 503
Score = 119 bits (60), Expect = 4e-025
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 542 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 601
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 211 ggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgca 270
Query: 602 catgctgggatgattg 617
||||||||||||||||
Sbjct: 271 catgctgggatgattg 286
>gb|CW272374.1|CW272374 104_744_11403400_116_36228_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403400, DNA
sequence
Length = 671
Score = 182 bits (92), Expect = 3e-044
Identities = 125/136 (91%)
Strand = Plus / Plus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||
Sbjct: 487 agcttggtggtctgaattcgttgctgcaagttgaagcatctccatcaataccccatgtgt 546
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaagata 155
|| ||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct: 547 cggaagtacccaccatcatcttgggtatggatgtgtctcatggccatccaggacaagata 606
Query: 156 gaccttcggttgcagc 171
| ||||| ||||||||
Sbjct: 607 ggccttcagttgcagc 622
Score = 65.9 bits (33), Expect = 5e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaag 37
||||||||||||||||||||||||||| |||||||||
Sbjct: 367 gtacctgcttaatttgctgatgaagattaatgcaaag 403
>gb|CW272375.1|CW272375 104_744_11403400_148_36227_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403400, DNA
sequence
Length = 709
Score = 176 bits (89), Expect = 2e-042
Identities = 108/113 (95%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 185 cgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatctgccagacta 244
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 709 cgtcaatggcctcttatctctaaatatagagcatcagtgcacacccaatccgccagacta 650
Query: 245 gaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctcat 297
|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct: 649 gaaatgatgtcctccttg-ttaagccacggggtactgatgatgatggcctcat 598
Score = 163 bits (82), Expect = 3e-038
Identities = 94/98 (95%)
Strand = Plus / Minus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 aggcatgtaagtttcttgatgagaagtggtcacccaagttcactgtgattgttgctcaaa 39
Query: 489 agaaccaccacaccaagttctttcagacggcatcacca 526
||||||||||||||||||| |||||||| | |||||||
Sbjct: 38 agaaccaccacaccaagttttttcagaccggatcacca 1
Score = 101 bits (51), Expect = 9e-020
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatcagat 423
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 271 agggatggagtcagcgaaagtcagtttacccaggtcatcaacattgaactggatcagat 213
Score = 95.6 bits (48), Expect = 5e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacataatta 359
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || |
Sbjct: 497 gggaatcactgattgacttctacactagctctggcaagcgaaaaccagaccacattatca 438
Query: 360 ttttcagg 367
||||||||
Sbjct: 437 ttttcagg 430
>gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154280, DNA
sequence
Length = 692
Score = 139 bits (70), Expect = 4e-031
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagac 676
|||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 80 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 139
Query: 677 gagatgcaggagtttgttcattcgctatcttacgtgta 714
|| ||||||||||||||||||||||| ||||| |||||
Sbjct: 140 gaaatgcaggagtttgttcattcgctctcttatgtgta 177
>gb|CW382183.1|CW382183 fsbb001f063p06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063p06, DNA
sequence
Length = 429
Score = 139 bits (70), Expect = 4e-031
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagac 676
|||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 92 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 151
Query: 677 gagatgcaggagtttgttcattcgctatcttacgtgta 714
|| ||||||||||||||||||||||| ||||| |||||
Sbjct: 152 gaaatgcaggagtttgttcattcgctctcttatgtgta 189
>gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 550
Score = 121 bits (61), Expect = 9e-026
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 626 aggcccacccactatcatgttctgcacgacgagataggtttctctgcagacgagatgcag 685
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 1 aggccgacccattatcatgttctgcacgatgagataggtttctctgctgacgaaatgcag 60
Query: 686 gagtttgttcattcgctatcttacgtgta 714
||||||||||||||||| ||||| |||||
Sbjct: 61 gagtttgttcattcgctctcttatgtgta 89
>gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891763, DNA
sequence
Length = 743
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 632 acccactatcatgttctgcacgacgagataggtttctctgcagacgagatgcaggagttt 691
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 3 acccattatcatgttctgcacgatgagataggtttctctgctgacgaaatgcaggagttt 62
Query: 692 gttcattcgctatcttacgtgta 714
||||||||||| ||||| |||||
Sbjct: 63 gttcattcgctctcttatgtgta 85
>gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 632 acccactatcatgttctgcacgacgagataggtttctctgcagacgagatgcaggagttt 691
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 4 acccattatcatgttctgcacgatgagataggtttctctgctgacgaaatgcaggagttt 63
Query: 692 gttcattcgctatcttacgtgta 714
||||||||||| ||||| |||||
Sbjct: 64 gttcattcgctctcttatgtgta 86
>gb|BI140650.1|BI140650 IP1_52_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 101 bits (51), Expect = 9e-020
Identities = 219/275 (79%)
Strand = Plus / Plus
Query: 176 gttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatct 235
|||||||||||| |||||||||||||||| | ||||||||| || || | |||||||||
Sbjct: 257 gttagttctcgtgaatggcctcttatctcgaaatatagagcttctgtccgcacccaatca 316
Query: 236 gccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctc 295
| | | |||||||| ||| ||||||||||| |||| ||||| |||||||| ||
Sbjct: 317 cctaagatggaaatgattgactctttgtttaagccacgggaaactgaagatgatggtctg 376
Query: 296 atccgggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacata 355
|||||||| | ||||| ||||||||||| || ||||| ||| || || || || |
Sbjct: 377 atccgggagtgtctgattgacttctacaccagttctgggaagaagaagcctgaccaagtc 436
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
|| || ||||||||||| || |||||||||||||||| ||||| | ||||||||| ||
Sbjct: 437 atcatcttcagggatggtgttagtgaaagtcagtttaatcaggtgctgaacattgagttg 496
Query: 416 gatcagatcatcgaggcatgtaagtttctggatga 450
| || ||||||||||| || |||||| |||||||
Sbjct: 497 caacaaatcatcgaggcttgcaagtttttggatga 531
Score = 42.1 bits (21), Expect = 0.069
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||| ||||| |||| |||||||| ||| ||||| ||||
Sbjct: 101 aagataaatgcaaagctgggtggcatgaattcgttgctccaaattgaaacatc 153
>gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 99.6 bits (50), Expect = 3e-019
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 645 ttctgcacgacgagataggtttctctgcagacgagatgcaggagtttgttcattcgctat 704
|||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1 ttctgcacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctct 60
Query: 705 cttacgtgta 714
|||| |||||
Sbjct: 61 cttatgtgta 70
>gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 5', mRNA sequence
Length = 723
Score = 99.6 bits (50), Expect = 3e-019
Identities = 257/326 (78%)
Strand = Plus / Plus
Query: 176 gttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatct 235
|||||||||||| |||||||||||||||| | ||||||||| || || | |||||||||
Sbjct: 87 gttagttctcgtgaatggcctcttatctcgaaatatagagcttctgtccgcacccaatca 146
Query: 236 gccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctc 295
| | | |||||||| ||| ||||||||||| |||| ||||| |||||| | ||
Sbjct: 147 cctaagatggaaatgattgactctttgtttaagccacgggaaactgaagatgatagtctg 206
Query: 296 atccgggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacata 355
|||||||| | ||||| ||||||||||| || ||||| ||| || || || || |
Sbjct: 207 atccgggagtgtctgattgacttctacaccagttctgggaagaagaagcctgaccaagtc 266
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
|| || ||||||||||| || |||||||||||||||| ||||| | ||||||||| ||
Sbjct: 267 atcatcttcagggatggtgttagtgaaagtcagtttaatcaggtgctgaacattgagttg 326
Query: 416 gatcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtg 475
| || ||||||||||| || |||||| ||||||| || ||| || |||||||| ||
Sbjct: 327 caacaaatcatcgaggcttgcaagtttttggatgaaaaatggaatccaaagttcacgttg 386
Query: 476 attgttgctcaaaagaaccaccacac 501
||| |||| || ||||| ||||||||
Sbjct: 387 attattgcccagaagaatcaccacac 412
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 451 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 510
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 511 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 570
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 571 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 626
>gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 656
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 14 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 73
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
| |||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||
Sbjct: 74 cgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgaga 133
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 134 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 189
>gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 677
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 15 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 74
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 75 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 134
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 135 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 190
>gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 61 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 120
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 121 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 180
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 181 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 236
>gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 28 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 87
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 88 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 147
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 148 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 203
>gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_B05_A002 3', mRNA sequence
Length = 683
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 106 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 165
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 166 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 225
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 226 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 281
>gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 3', mRNA sequence
Length = 733
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Plus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 39 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 98
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 99 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 158
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 159 taggcttcaatcctgatgatctgcaggagctggtgcattcgctttcttacgtgtac 214
>gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 871
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Minus
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 708 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 649
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
| |||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||
Sbjct: 648 cgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgaga 589
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 588 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 533
Score = 58.0 bits (29), Expect = 1e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 377 agtgaaagtcagtttacccaggtcatcaacattgagctggatcagatcatcgaggcatgt 436
|||||||||||||||| ||||| | ||||||||| || | || ||||||||||| ||
Sbjct: 871 agtgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgc 812
Query: 437 aagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaaccac 496
|||||| ||||||| || ||| || |||||||| ||||| |||| || ||||| |||
Sbjct: 811 aagtttttggatgaaaaatggaatccgaagttcacgttgattattgcgcagaagaatcac 752
Query: 497 cacac 501
|||||
Sbjct: 751 cacac 747
>gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 360
Score = 85.7 bits (43), Expect = 5e-015
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 656 gagataggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgta 714
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 10 gagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgta 68
>gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_F09_A011 3', mRNA sequence
Length = 585
Score = 85.7 bits (43), Expect = 5e-015
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 656 gagataggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgta 714
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 3 gagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgta 61
>gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 646
Score = 79.8 bits (40), Expect = 3e-013
Identities = 127/156 (81%)
Strand = Plus / Plus
Query: 560 aaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgga 619
|||||||| ||||| | |||||| ||||||||||||||| |||||||||| ||||| ||
Sbjct: 4 aaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatcggg 63
Query: 620 acaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagacgag 679
|| || ||||| || || |||||| | ||||| || |||||||| ||| | | || ||
Sbjct: 64 actacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgatgat 123
Query: 680 atgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||| ||||||||||||
Sbjct: 124 ctgcaggagctggtgcattcgctctcttacgtgtac 159
>gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 79.8 bits (40), Expect = 3e-013
Identities = 127/156 (81%)
Strand = Plus / Plus
Query: 560 aaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgga 619
|||||||| ||||| | |||||| ||||||||||||||| |||||||||| ||||| ||
Sbjct: 7 aaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatcggg 66
Query: 620 acaacaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagacgag 679
|| || ||||| || || |||||| | ||||| || |||||||| ||| | | || ||
Sbjct: 67 actacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgatgat 126
Query: 680 atgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||| ||||||||||||
Sbjct: 127 ctgcaggagctggtgcattcgctctcttacgtgtac 162
>gb|BI074812.1|BI074812 IP1_16_G03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 75.8 bits (38), Expect = 5e-012
Identities = 128/158 (81%)
Strand = Plus / Plus
Query: 176 gttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatct 235
|||||||||||| |||||||||||||||| | ||||||||| || || | |||||||||
Sbjct: 354 gttagttctcgtgaatggcctcttatctcgaaatatagagcttctgtccgcacccaatca 413
Query: 236 gccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctc 295
| | | |||||||| ||| ||||||||||| |||| ||||| |||||||| ||
Sbjct: 414 cctaagatggaaatgattgactctttgtttaagccacgggaaactgaagatgatggtctg 473
Query: 296 atccgggaatcactgatcgacttctacactagctctgg 333
|||||||| | ||||| ||||||||||| || |||||
Sbjct: 474 atccgggagtgtctgattgacttctacaccagttctgg 511
Score = 42.1 bits (21), Expect = 0.069
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||| ||||| |||| |||||||| ||| ||||| ||||
Sbjct: 198 aagataaatgcaaagctgggtggcatgaattcgttgctccaaattgaaacatc 250
>gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 635
Score = 69.9 bits (35), Expect = 3e-010
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 577 gaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccaccca 636
|||||| ||||||||||||||| | |||||||| ||||| || || || ||||| || ||
Sbjct: 15 gaactttgacttctacatgtgttcgcatgctggaatgatcgggactacgaggccaactca 74
Query: 637 ctatcatgttctgcacgacgagataggtttctctgcagacgagatgcaggagtttgttca 696
|||||| ||||||| || |||||||| ||| | | || || |||||||| | || ||
Sbjct: 75 ttatcatattctgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgca 134
Query: 697 ttcgctatcttacgtgtac 715
|||||| ||||||||||||
Sbjct: 135 ttcgctctcttacgtgtac 153
>gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 3', mRNA sequence
Length = 638
Score = 69.9 bits (35), Expect = 3e-010
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 577 gaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccaccca 636
|||||| ||||||||||||||| |||||||||| ||||| || || || ||||| || ||
Sbjct: 8 gaactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggccaactca 67
Query: 637 ctatcatgttctgcacgacgagataggtttctctgcagacgagatgcaggagtttgttca 696
|||||| | ||||| || |||||||| ||| | | || || |||||||| | || ||
Sbjct: 68 ttatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgca 127
Query: 697 ttcgctatcttacgtgtac 715
|||||| ||||||||||||
Sbjct: 128 ttcgctctcttacgtgtac 146
>gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f20, DNA
sequence
Length = 703
Score = 67.9 bits (34), Expect = 1e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 542 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 601
|||||||| ||||| | |||||||| ||||| | |||||| ||||||||||||||| ||
Sbjct: 62 ggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgttca 121
Query: 602 catgctgggatgat 615
|||||||| |||||
Sbjct: 122 catgctggaatgat 135
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgta 714
|||||||| | || |||||||| |||||||||||
Sbjct: 521 tgcaggagctggtgcattcgctctcttacgtgta 554
>gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 651
Score = 67.9 bits (34), Expect = 1e-009
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 563 gtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaaca 622
||||| ||||| | |||||| ||||||||||||||| | ||||||| ||||| || ||
Sbjct: 1 gtttgtcatccaaggaactttgacttctacatgtgttcgcatgctgnaatgatcgggact 60
Query: 623 acaaggcccacccactatcatgttctgcacgacgagataggtttctctgcagacgagatg 682
|| ||||| || || |||||| ||||||| || |||||||| ||| | | || || ||
Sbjct: 61 acgaggccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatctg 120
Query: 683 caggagtttgttcattcgctatcttacgtgtac 715
|||||| | || |||||||| ||||||||||||
Sbjct: 121 caggagctggtgcattcgctctcttacgtgtac 153
>gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 324
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 665 ttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgta 714
|||||||| ||||| ||||||||||||||||||||||| ||||| |||||
Sbjct: 1 ttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgta 50
>gb|BM324187.1|BM324187 PIC1_25_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 512
Score = 61.9 bits (31), Expect = 7e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 176 gttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatc 234
|||||||||||| |||||||||||||||| | ||||||||| || || | |||||||||
Sbjct: 426 gttagttctcgtgaatggcctcttatctcgaaatatagagcttctgtccgcacccaatc 484
Score = 42.1 bits (21), Expect = 0.069
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||| ||||| |||| |||||||| ||| ||||| ||||
Sbjct: 270 aagataaatgcaaagctgggtggcatgaattcgttgctccaaattgaaacatc 322
>gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 674 gacgagatgcaggagtttgttcattcgctatctta 708
||||| ||||||||||||||||||||||| |||||
Sbjct: 8 gacgaaatgcaggagtttgttcattcgctctctta 42
>gb|CF485311.1|CF485311 POL1_30_F05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 5', mRNA sequence
Length = 689
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 176 gttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatc 234
|||||||||||| |||||||||||||||| ||||||||| || || | |||||||||
Sbjct: 627 gttagttctcgtgaatggcctcttatctcggaatatagagcttctgtccgcacccaatc 685
Score = 42.1 bits (21), Expect = 0.069
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||| ||||| |||| |||||||| ||| ||||| ||||
Sbjct: 471 aagataaatgcaaagctgggtggcatgaattcgttgctccaaattgaaacatc 523
>gb|BZ336052.1|BZ336052 hz28d11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz28d11 5', DNA sequence
Length = 688
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 461 cccaagttcactgtgattgttgctcaaaagaaccaccacac 501
||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 436 cccaagttcacagtgattgttgcgcagaagaaccatcacac 396
>gb|CW066457.1|CW066457 104_313_10523697_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523697, DNA
sequence
Length = 696
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 461 cccaagttcactgtgattgttgctcaaaagaaccaccacac 501
||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 433 cccaagttcacagtgattgttgcgcagaagaaccatcacac 473
>gb|CW257089.1|CW257089 104_722_11227151_148_35148_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227151, DNA
sequence
Length = 681
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 461 cccaagttcactgtgattgttgctcaaaagaaccaccacac 501
||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 258 cccaagttcacagtgattgttgcgcagaagaaccatcacac 298
>gb|CW288849.1|CW288849 104_767_11412169_148_35539_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412169, DNA
sequence
Length = 630
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 461 cccaagttcactgtgattgttgctcaaaagaaccaccacac 501
||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 48 cccaagttcacagtgattgttgcgcagaagaaccatcacac 8
>gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945316, DNA
sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 684 aggagtttgttcattcgctatcttacgtgta 714
||||||||||||||||||| ||||| |||||
Sbjct: 625 aggagtttgttcattcgctctcttatgtgta 595
>gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 193
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||||||||||||||||
Sbjct: 2 tgcaggagctggtgcattcgctatcttacgtgtac 36
>gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 634
Score = 44.1 bits (22), Expect = 0.017
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 602 catgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgagata 661
|||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||||
Sbjct: 7 catgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgagata 66
Query: 662 ggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 67 ggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 120
>gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 44.1 bits (22), Expect = 0.017
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 602 catgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgagata 661
|||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||||
Sbjct: 9 catgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgagata 68
Query: 662 ggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 69 ggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 122
>gb|BZ336053.1|BZ336053 hz28d11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz28d11 5', DNA sequence
Length = 578
Score = 42.1 bits (21), Expect = 0.069
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 107 accatcatcttaggtatggatgtttcacatggt 139
||||| ||||| |||||||||||||| ||||||
Sbjct: 381 accattatctttggtatggatgtttcgcatggt 413
>gb|CL187585.1|CL187585 104_403_10900988_114_32462_076 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900988, DNA
sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.069
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 107 accatcatcttaggtatggatgtttcacatggt 139
||||| ||||| |||||||||||||| ||||||
Sbjct: 84 accattatctttggtatggatgtttcgcatggt 116
>gb|CW051010.1|CW051010 104_291_10514996_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514996, DNA
sequence
Length = 433
Score = 42.1 bits (21), Expect = 0.069
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 107 accatcatcttaggtatggatgtttcacatggt 139
||||| ||||| |||||||||||||| ||||||
Sbjct: 242 accattatctttggtatggatgtttcgcatggt 274
>gb|CW061656.1|CW061656 104_305_10520518_114_30152 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520518, DNA
sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.069
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatggt 139
||||| ||||| |||||||||||||| ||||||
Sbjct: 397 accattatctttggtatggatgtttcgcatggt 365
>gb|CW061657.1|CW061657 104_305_10520518_115_30153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520518, DNA
sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.069
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 107 accatcatcttaggtatggatgtttcacatggt 139
||||| ||||| |||||||||||||| ||||||
Sbjct: 448 accattatctttggtatggatgtttcgcatggt 480
>gb|CW288848.1|CW288848 104_767_11412169_116_35543_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412169, DNA
sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.069
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 107 accatcatcttaggtatggatgtttcacatggt 139
||||| ||||| |||||||||||||| ||||||
Sbjct: 241 accattatctttggtatggatgtttcgcatggt 273
>gb|BF655982.1|BF655982 FM1_42_D11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 616
Score = 42.1 bits (21), Expect = 0.069
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||| ||||| |||| |||||||| ||| ||||| ||||
Sbjct: 541 aagataaatgcaaagctgggtggcatgaattcgttgctccaaattgaaacatc 593
>gb|BG412718.1|BG412718 OV2_33_H08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.069
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||| ||||| |||| |||||||| ||| ||||| ||||
Sbjct: 411 aagataaatgcaaagctgggtggcatgaattcgttgctccaaattgaaacatc 463
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 176 gttagttctcgtcaatggcctc 197
|||||||||||| |||||||||
Sbjct: 567 gttagttctcgtgaatggcctc 588
>gb|CW081756.1|CW081756 104_421_10942771_114_32308_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942771, DNA
sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 197 cttatctctagatatagagc 216
||||||||||||||||||||
Sbjct: 561 cttatctctagatatagagc 580
>gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.27
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 2 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 61
Query: 660 taggtttctctgcagacgagatgcaggagtttgttcattcgctatcttacgtgtac 715
|||| ||| | | || || |||||||| | || |||||||| ||||||||||||
Sbjct: 62 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtac 117
>gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 3', mRNA sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 534 ttcttcctggaactgtggtggata 557
||||||||||||||||||| ||||
Sbjct: 49 ttcttcctggaactgtggttgata 72
>gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_A08_A002 5', mRNA sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 534 ttcttcctggaactgtggtggata 557
||||||||||||||||||| ||||
Sbjct: 460 ttcttcctggaactgtggttgata 483
>gb|CW102128.1|CW102128 104_470_11011172_148_34413_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011172, DNA
sequence
Length = 295
Score = 38.2 bits (19), Expect = 1.1
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 461 cccaagttcactgtgattgttgctcaaaagaacca 495
||||||||||| |||||||||| ||||| |||||
Sbjct: 210 cccaagttcacaatgattgttgcgcaaaacaacca 244
>gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 38.2 bits (19), Expect = 1.1
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||| ||||||||||||
Sbjct: 27 tgcaggagctggtgcattcgctctcttacgtgtac 61
>gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 522
Score = 38.2 bits (19), Expect = 1.1
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||| ||||||||||||
Sbjct: 2 tgcaggagctggtgcattcgctctcttacgtgtac 36
>gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 609
Score = 38.2 bits (19), Expect = 1.1
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||| ||||||||||||
Sbjct: 61 tgcaggagctggtgcattcgctctcttacgtgtac 95
>gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 38.2 bits (19), Expect = 1.1
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||| ||||||||||||
Sbjct: 51 tgcaggagctggtgcattcgctctcttacgtgtac 85
>gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 680
Score = 38.2 bits (19), Expect = 1.1
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgtac 715
|||||||| | || |||||||| ||||||||||||
Sbjct: 132 tgcaggagctggtgcattcgctctcttacgtgtac 166
>gb|BZ780104.1|BZ780104 ii37c09.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii37c09, DNA sequence
Length = 477
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 36 tcttatcactagatatagagca 57
>gb|CL175719.1|CL175719 104_381_10892640_148_31764_240 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892640, DNA
sequence
Length = 280
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 196 tcttatctctagatatagagca 217
||||||||||||||||| ||||
Sbjct: 110 tcttatctctagatatatagca 131
>gb|CL188884.1|CL188884 104_405_10901898_114_32453_069 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901898, DNA
sequence
Length = 671
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59 ctgcaagttgaagcatct 76
||||||||||||||||||
Sbjct: 616 ctgcaagttgaagcatct 599
>gb|CL188885.1|CL188885 104_405_10901898_116_32457_069 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901898, DNA
sequence
Length = 674
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59 ctgcaagttgaagcatct 76
||||||||||||||||||
Sbjct: 571 ctgcaagttgaagcatct 588
>gb|CW034441.1|CW034441 104_264_10502549_114_30358 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502549, DNA
sequence
Length = 385
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 153 tcttatcactagatatagagca 174
>gb|CW119243.1|CW119243 104_496_11108659_116_34636_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108659, DNA
sequence
Length = 621
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 432 tcttatcactagatatagagca 453
>gb|CW210449.1|CW210449 104_640_11189800_148_36999_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189800, DNA
sequence
Length = 609
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 6 tcttatcactagatatagagca 27
>gb|CW227618.1|CW227618 104_667_11205904_148_37241_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205904, DNA
sequence
Length = 617
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59 ctgcaagttgaagcatct 76
||||||||||||||||||
Sbjct: 580 ctgcaagttgaagcatct 563
>gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225238, DNA
sequence
Length = 665
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgta 714
|||||||| | || |||||||| |||||||||||
Sbjct: 50 tgcaggagctggtgcattcgctctcttacgtgta 83
>gb|CW265821.1|CW265821 104_735_11232092_148_35268_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232092, DNA
sequence
Length = 630
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 41 tcttatcactagatatagagca 62
>gb|CW266023.1|CW266023 104_735_11232204_116_35270_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232204, DNA
sequence
Length = 707
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 574 tcttatcactagatatagagca 553
>gb|CW376483.1|CW376483 fsbb001f054g08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054g08, DNA
sequence
Length = 611
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59 ctgcaagttgaagcatct 76
||||||||||||||||||
Sbjct: 302 ctgcaagttgaagcatct 285
>gb|CW407933.1|CW407933 fsbb001f101j19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101j19, DNA
sequence
Length = 781
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59 ctgcaagttgaagcatct 76
||||||||||||||||||
Sbjct: 123 ctgcaagttgaagcatct 106
>gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163m16, DNA
sequence
Length = 725
Score = 36.2 bits (18), Expect = 4.3
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 681 tgcaggagtttgttcattcgctatcttacgtgta 714
|||||||| | || |||||||| |||||||||||
Sbjct: 119 tgcaggagctggtgcattcgctctcttacgtgta 152
>gb|CW465022.1|CW465022 fsbb001f215j07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215j07, DNA
sequence
Length = 642
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 535 tcttatcactagatatagagca 514
>gb|CW471475.1|CW471475 fsbb001f225g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225g13, DNA
sequence
Length = 426
Score = 36.2 bits (18), Expect = 4.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 196 tcttatctctagatatagagca 217
||||||| ||||||||||||||
Sbjct: 193 tcttatcactagatatagagca 214
>gb|BG053773.1|BG053773 RHIZ2_9_F01.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 305
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 75 atagagcatcagtgcaca 58
>gb|BG102295.1|BG102295 RHIZ2_24_E08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 560
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 208 atagagcatcagtgcaca 191
>gb|BG947240.1|BG947240 IP1_3_B12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 625
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 596 atagagcatcagtgcaca 579
>gb|CN128984.1|CN128984 RHOH1_32_G05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_G05_A002 5', mRNA sequence
Length = 898
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 832 atagagcatcagtgcaca 815
>gb|CN138234.1|CN138234 OX1_62_C02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_62_C02_A002 5', mRNA sequence
Length = 841
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atagagcatcagtgcaca 227
||||||||||||||||||
Sbjct: 828 atagagcatcagtgcaca 811
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 194,902
Number of Sequences: 832831
Number of extensions: 194902
Number of successful extensions: 55131
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54982
Number of HSP's gapped (non-prelim): 135
length of query: 715
length of database: 491,359,669
effective HSP length: 20
effective length of query: 695
effective length of database: 474,703,049
effective search space: 329918619055
effective search space used: 329918619055
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)