BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.707
(919 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE918758.1|BE918758 OV1_4_F07.b1_A002 Ovary 1 (OV1) Sorg... 811 0.0
gb|AW678624.1|AW678624 WS1_1_B09.b1_A002 Water-stressed 1 (... 801 0.0
gb|AW924819.1|AW924819 WS1_72_B04.b1_A002 Water-stressed 1 ... 791 0.0
gb|AW678772.1|AW678772 WS1_1_B09.b2_A002 Water-stressed 1 (... 771 0.0
gb|BG049052.1|BG049052 OV1_22_F08.g1_A002 Ovary 1 (OV1) Sor... 698 0.0
gb|BG048759.1|BG048759 OV1_22_F08.b1_A002 Ovary 1 (OV1) Sor... 650 0.0
gb|BE918502.1|BE918502 OV1_4_F07.g1_A002 Ovary 1 (OV1) Sorg... 636 0.0
gb|BG240473.1|BG240473 OV1_30_E01.b1_A002 Ovary 1 (OV1) Sor... 583 e-164
gb|BI098849.1|BI098849 IP1_34_A06.b1_A002 Immature pannicle... 563 e-158
gb|CN147282.1|CN147282 WOUND1_48_F06.g1_A002 Wounded leaves... 545 e-153
gb|BI098850.1|BI098850 IP1_34_A07.b1_A002 Immature pannicle... 511 e-143
gb|AW746461.1|AW746461 WS1_53_D09.b1_A002 Water-stressed 1 ... 505 e-141
gb|AW746528.1|AW746528 WS1_53_D09.g1_A002 Water-stressed 1 ... 505 e-141
gb|BI098561.1|BI098561 IP1_34_A06.g1_A002 Immature pannicle... 505 e-141
gb|CF757376.1|CF757376 DSAF1_17_B08.g1_A011 Drought-stresse... 498 e-139
gb|BE125185.1|BE125185 DG1_14_H09.b1_A002 Dark Grown 1 (DG1... 484 e-135
gb|AW924895.1|AW924895 WS1_72_B04.g1_A002 Water-stressed 1 ... 454 e-126
gb|BI098562.1|BI098562 IP1_34_A07.g1_A002 Immature pannicle... 428 e-118
gb|CF481330.1|CF481330 POL1_71_G11.b1_A002 Pollen Sorghum b... 353 2e-095
gb|CW473046.1|CW473046 fsbb001f228e07f0 Sorghum methylation... 276 3e-072
gb|CL170814.1|CL170814 104_372_10888963_116_31779_019 Sorgh... 264 1e-068
gb|CW469883.1|CW469883 fsbb001f222m21k0 Sorghum methylation... 264 1e-068
gb|CW287218.1|CW287218 104_765_11411301_116_35521_091 Sorgh... 147 2e-033
gb|CW287219.1|CW287219 104_765_11411301_148_35525_091 Sorgh... 147 2e-033
gb|BE356605.1|BE356605 DG1_126_A09.g1_A002 Dark Grown 1 (DG... 135 8e-030
gb|CW213053.1|CW213053 104_644_11191343_148_37031_090 Sorgh... 92 1e-016
gb|CW213052.1|CW213052 104_644_11191343_116_37030_090 Sorgh... 80 4e-013
gb|CW469882.1|CW469882 fsbb001f222m21f0 Sorghum methylation... 80 4e-013
gb|CF481415.1|CF481415 POL1_71_G11.g1_A002 Pollen Sorghum b... 78 2e-012
gb|CL159906.1|CL159906 104_350_10804599_116_31823_039 Sorgh... 66 6e-009
gb|CW473047.1|CW473047 fsbb001f228e07k0 Sorghum methylation... 66 6e-009
gb|CW066109.1|CW066109 104_313_10523512_115_30149 Sorghum m... 52 9e-005
gb|CW478973.1|CW478973 fsbb001f237c09k0 Sorghum methylation... 52 9e-005
gb|BH245474.1|BH245474 pSB0708 S. bicolor BTx623 PstI-diges... 44 0.023
gb|AW746106.1|AW746106 WS1_39_H12.b1_A002 Water-stressed 1 ... 44 0.023
gb|BE125106.1|BE125106 DG1_16_B08.b1_A002 Dark Grown 1 (DG1... 44 0.023
gb|BE595081.1|BE595081 PI1_45_D09.b1_A002 Pathogen induced ... 44 0.023
gb|CB928442.1|CB928442 ABA1_15_G12.g1_A012 Abscisic acid-tr... 44 0.023
gb|BZ330788.1|BZ330788 hv97c11.g1 WGS-SbicolorF (JM107 adap... 42 0.089
gb|BZ338637.1|BZ338637 ia96g12.g1 WGS-SbicolorF (JM107 adap... 42 0.089
gb|BZ340465.1|BZ340465 ic39b02.g1 WGS-SbicolorF (JM107 adap... 42 0.089
gb|CW084113.1|CW084113 104_426_10945584_116_32441_086 Sorgh... 42 0.089
gb|CW313819.1|CW313819 104_804_11471491_148_35796_076 Sorgh... 42 0.089
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 42 0.089
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.35
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.35
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.35
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.35
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.35
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.35
>gb|BE918758.1|BE918758 OV1_4_F07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 596
Score = 811 bits (409), Expect = 0.0
Identities = 533/570 (93%), Gaps = 7/570 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 581 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 523
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 522 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 466
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 465 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 406
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 405 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 346
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 345 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 286
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 285 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 226
Query: 653 cttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttgttcggctcctt 712
|||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 225 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 166
Query: 713 ggtgaactgcaccttggcattgccgttgccgaactgcttcacaaggaaggagttgttctt 772
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 165 ggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttctt 106
Query: 773 cctcacaacctgccagatcagatcccctggaacggttgccatttcccttcgccggagaag 832
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 105 cctcacaacctgccagatcagatccccaggaacggttgccatttcccttcgccggagatg 46
Query: 833 aggtgccgcggcgtcgcctcgctctgttcc 862
||||||||||||||||| | ||||||||||
Sbjct: 45 aggtgccgcggcgtcgcgttgctctgttcc 16
>gb|AW678624.1|AW678624 WS1_1_B09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 582
Score = 801 bits (404), Expect = 0.0
Identities = 522/557 (93%), Gaps = 7/557 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 566 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 508
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 507 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 451
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 450 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 391
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 390 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 331
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 330 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 271
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 270 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 211
Query: 653 cttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttgttcggctcctt 712
|||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 210 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 151
Query: 713 ggtgaactgcaccttggcattgccgttgccgaactgcttcacaaggaaggagttgttctt 772
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 150 ggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttctt 91
Query: 773 cctcacaacctgccagatcagatcccctggaacggttgccatttcccttcgccggagaag 832
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 90 cctcacaacctgccagatcagatccccaggaacggttgccatttcccttcgccggagatg 31
Query: 833 aggtgccgcggcgtcgc 849
|||||||||||||||||
Sbjct: 30 aggtgccgcggcgtcgc 14
>gb|AW924819.1|AW924819 WS1_72_B04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 791 bits (399), Expect = 0.0
Identities = 523/560 (93%), Gaps = 7/560 (1%)
Strand = Plus / Minus
Query: 306 aactgttggaacatagataaatataagctgggactacgagcaccaacatgccccctgaca 365
||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 566 aactgttggaacatagataaacataagctgggactatgagcaccaaca-gccccttgaca 508
Query: 366 gaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccggacttggcaacc 425
||||| | ||||| |||| || |||||||||||||||||||||||| ||||||||||||
Sbjct: 507 gaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccagacttggcaacc 451
Query: 426 tggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcagatcaggcctg 485
||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 450 tggaggctgcggtacactgagctcagcctagcaagagccggcttggtcagatcaggcctg 391
Query: 486 tagtagttgtcactaacctggtttttcacagccttggccatcttgcggaactccttgcgc 545
||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 390 tagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaactccttgcgc 331
Query: 546 atcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtcttggtagtagag 605
|||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct: 330 atcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttgag 271
Query: 606 aggaccacagccgagtccttt---gcagctggctggatcgtcacagtcttcttgttcgcc 662
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 270 aggaccacagccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgcc 211
Query: 663 aaacccgagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactgc 722
|| || ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 210 aagccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgc 151
Query: 723 accttggcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaacc 782
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 150 accttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacc 91
Query: 783 tgccagatcagatcccctggaacggttgccatttcccttcgccggagaagaggtgccgcg 842
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 90 tgccagatcagatccccaggaacggttgccatttcccttcgccggagatgaggtgccgcg 31
Query: 843 gcgtcgcctcgctctgttcc 862
||||||| | ||||||||||
Sbjct: 30 gcgtcgcgttgctctgttcc 11
>gb|AW678772.1|AW678772 WS1_1_B09.b2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 771 bits (389), Expect = 0.0
Identities = 507/542 (93%), Gaps = 7/542 (1%)
Strand = Plus / Minus
Query: 311 ttggaacatagataaatataagctgggactacgagcaccaacatgccccctgacagaaca 370
|||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 551 ttggaacatagataaacataagctgggactatgagcaccaaca-gccccttgacagaaca 493
Query: 371 caaacttagcgcttaggactgcctgttcttcttcttgacaccggacttggcaacctggag 430
| ||||| |||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 492 --agcttagtgcttggg-ctgcctgttcttcttcttgacaccagacttggcaacctggag 436
Query: 431 gctgaggtacaccgagctcagcctagcaagagctggcttggtcagatcaggcctgtagta 490
|||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 435 gctgcggtacactgagctcagcctagcaagagccggcttggtcagatcaggcctgtagta 376
Query: 491 gttgtcactaacctggtttttcacagccttggccatcttgcggaactccttgcgcatcac 550
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 375 gttgtcgctaacctgatttttcacggccttagccatcttgcggaactccttgcgcatcac 316
Query: 551 agacttgtggctgagcttcgcaggtgcgttctgcttcttggtcttggtagtagagaggac 610
||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 315 agacttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttgagaggac 256
Query: 611 cacagccgagtccttt---gcagctggctggatcgtcacagtcttcttgttcgccaaacc 667
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 255 cacagccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgccaagcc 196
Query: 668 cgagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactgcacctt 727
||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 195 agagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacctt 136
Query: 728 ggcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaacctgcca 787
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgcca 76
Query: 788 gatcagatcccctggaacggttgccatttcccttcgccggagaagaggtgccgcggcgtc 847
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 75 gatcagatccccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcgtc 16
Query: 848 gc 849
||
Sbjct: 15 gc 14
>gb|BG049052.1|BG049052 OV1_22_F08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 532
Score = 698 bits (352), Expect = 0.0
Identities = 464/497 (93%), Gaps = 7/497 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 493 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 435
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 434 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 378
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 377 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 318
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 317 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 258
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 257 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 198
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 197 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 138
Query: 653 cttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttgttcggctcctt 712
|||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 137 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 78
Query: 713 ggtgaactgcaccttggcattgccgttgccgaactgcttcacaaggaaggagttgttctt 772
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 77 ggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttctt 18
Query: 773 cctcacaacctgccaga 789
|||||||||||||||||
Sbjct: 17 cctcacaacctgccaga 1
>gb|BG048759.1|BG048759 OV1_22_F08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 442
Score = 650 bits (328), Expect = 0.0
Identities = 405/430 (94%), Gaps = 3/430 (0%)
Strand = Plus / Minus
Query: 436 ggtacaccgagctcagcctagcaagagctggcttggtcagatcaggcctgtagtagttgt 495
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 ggtacactgagctcagcctagcaagagccggcttggtcagatcaggcctgtagtagttgt 381
Query: 496 cactaacctggtttttcacagccttggccatcttgcggaactccttgcgcatcacagact 555
| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 cgctaacctgatttttcacggccttagccatcttgcggaactccttgcgcatcacagact 321
Query: 556 tgtggctgagcttcgcaggtgcgttctgcttcttggtcttggtagtagagaggaccacag 615
|||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 320 tgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttgagaggaccacag 261
Query: 616 ccgagtccttt---gcagctggctggatcgtcacagtcttcttgttcgccaaacccgagt 672
||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct: 260 ccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgccaagccagagt 201
Query: 673 gtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactgcaccttggcat 732
||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 200 gtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcaccttagcat 141
Query: 733 tgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaacctgccagatca 792
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccagatca 81
Query: 793 gatcccctggaacggttgccatttcccttcgccggagaagaggtgccgcggcgtcgcctc 852
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 80 gatccccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcgtcgcgtt 21
Query: 853 gctctgttcc 862
||||||||||
Sbjct: 20 gctctgttcc 11
>gb|BE918502.1|BE918502 OV1_4_F07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 616
Score = 636 bits (321), Expect = 0.0
Identities = 433/466 (92%), Gaps = 7/466 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 462 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 404
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 403 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 347
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 346 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 287
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 286 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 227
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 226 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 167
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 166 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 107
Query: 653 cttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttgttcggctcctt 712
|||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 106 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 47
Query: 713 ggtgaactgcaccttggcattgccgttgccgaactgcttcacaagg 758
||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 46 ggtgaactgcaccttagcattgccgttgccaaactgcttcacaagg 1
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 518 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 466
>gb|BG240473.1|BG240473 OV1_30_E01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 583 bits (294), Expect = e-164
Identities = 375/400 (93%), Gaps = 4/400 (1%)
Strand = Plus / Minus
Query: 467 cttggtcagatcaggcc-tgtagtagttgtcactaacctggtttttcacagccttggcca 525
||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 409 cttggtcagatcaggccctgtagtagttgtcgctaacctgatttttcacggccttagcca 350
Query: 526 tcttgcggaactccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgct 585
||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 349 tcttgcggaactcgttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgct 290
Query: 586 tcttggtcttggtagtagagaggaccacagccgagtccttt---gcagctggctggatcg 642
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct: 289 tcttggtcttggtagttgagaggaccacagccgagtcctttccagcagctggctggatag 230
Query: 643 tcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttgt 702
|||||||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||
Sbjct: 229 tcacagtcttcttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgt 170
Query: 703 tcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaaggaagg 762
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 169 tgggctccttggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaagg 110
Query: 763 agttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttcccttc 822
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 109 agttgttcttcctcacaacctgccagatcagatccccaggaacggttgccatttcccttc 50
Query: 823 gccggagaagaggtgccgcggcgtcgcctcgctctgttcc 862
|||||||| |||||||||||||||||| | ||||||||||
Sbjct: 49 gccggagatgaggtgccgcggcgtcgcgttgctctgttcc 10
>gb|BI098849.1|BI098849 IP1_34_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 402
Score = 563 bits (284), Expect = e-158
Identities = 357/381 (93%), Gaps = 3/381 (0%)
Strand = Plus / Minus
Query: 485 gtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaactccttgcg 544
|||||||||||| |||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 397 gtagtagttgtcgctaacctgatttttcacggcnttagccatcttgcggaactccttgcg 338
Query: 545 catcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtcttggtagtaga 604
||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct: 337 catcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttga 278
Query: 605 gaggaccacagccgagtccttt---gcagctggctggatcgtcacagtcttcttgttcgc 661
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 277 gaggaccacagccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgc 218
Query: 662 caaacccgagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactg 721
||| || ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 217 caagccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactg 158
Query: 722 caccttggcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaac 781
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 157 caccttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaac 98
Query: 782 ctgccagatcagatcccctggaacggttgccatttcccttcgccggagaagaggtgccgc 841
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 97 ctgccagatcagatccccaggaacggttgccatttcccttcgccggagatgaggtgccgc 38
Query: 842 ggcgtcgcctcgctctgttcc 862
|||||||| | ||||||||||
Sbjct: 37 ggcgtcgcgttgctctgttcc 17
>gb|CN147282.1|CN147282 WOUND1_48_F06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_F06_A002 5', mRNA sequence
Length = 715
Score = 545 bits (275), Expect = e-153
Identities = 343/365 (93%), Gaps = 3/365 (0%)
Strand = Plus / Minus
Query: 501 acctggtttttcacagccttggccatcttgcggaactccttgcgcatcacagacttgtgg 560
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acctgatttttcacggccttagccatcttgcggaactccttgcgcatcacagacttgtga 320
Query: 561 ctgagcttcgcaggtgcgttctgcttcttggtcttggtagtagagaggaccacagccgag 620
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 ctgagcttagcaggtgtgttctgcttcttggtcttggtagttgagaggaccacagccgag 260
Query: 621 tccttt---gcagctggctggatcgtcacagtcttcttgttcgccaaacccgagtgtttg 677
|||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 259 tcctttccagcagctggctggatagtcacagtcttcttgttcgccaagccagagtgtttg 200
Query: 678 aaggagtggatgttgtagaggttgttcggctccttggtgaactgcaccttggcattgccg 737
||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 199 taggagtggacgttgtagaggttgttgggctccttggtgaactgcaccttagcattgccg 140
Query: 738 ttgccgaactgcttcacaaggaaggagttgttcttcctcacaacctgccagatcagatcc 797
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccagatcagatcc 80
Query: 798 cctggaacggttgccatttcccttcgccggagaagaggtgccgcggcgtcgcctcgctct 857
|| |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct: 79 ccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcgtcgcgttgctct 20
Query: 858 gttcc 862
|||||
Sbjct: 19 gttcc 15
>gb|BI098850.1|BI098850 IP1_34_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 355
Score = 511 bits (258), Expect = e-143
Identities = 319/339 (94%), Gaps = 3/339 (0%)
Strand = Plus / Minus
Query: 527 cttgcggaactccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgctt 586
||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 355 cttgcggaactccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgctt 296
Query: 587 cttggtcttggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgt 643
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 295 cttggtcttggtagtgnagaggaccacagccgagtcctttccagcagctggctggatagt 236
Query: 644 cacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttgtt 703
||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||
Sbjct: 235 cacagtcttcttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgtt 176
Query: 704 cggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaaggaagga 763
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 175 gggctccttggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaagga 116
Query: 764 gttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttcccttcg 823
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 115 gttgttcttcctcacaacctgccagatcagatccccaggaacggttgccatttcccttcg 56
Query: 824 ccggagaagaggtgccgcggcgtcgcctcgctctgttcc 862
||||||| |||||||||||||||||| | ||||||||||
Sbjct: 55 ccggagatgaggtgccgcggcgtcgcgttgctctgttcc 17
>gb|AW746461.1|AW746461 WS1_53_D09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 505 bits (255), Expect = e-141
Identities = 346/372 (93%), Gaps = 7/372 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 381 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 323
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 322 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 266
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 265 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 206
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 205 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 146
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 145 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 86
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 85 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 26
Query: 653 cttgttcgccaa 664
||||||||||||
Sbjct: 25 cttgttcgccaa 14
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 437 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 385
>gb|AW746528.1|AW746528 WS1_53_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 464
Score = 505 bits (255), Expect = e-141
Identities = 346/372 (93%), Gaps = 7/372 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 381 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 323
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 322 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 266
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 265 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 206
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 205 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 146
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 145 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 86
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 85 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 26
Query: 653 cttgttcgccaa 664
||||||||||||
Sbjct: 25 cttgttcgccaa 14
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 437 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 385
>gb|BI098561.1|BI098561 IP1_34_A06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 523
Score = 505 bits (255), Expect = e-141
Identities = 346/372 (93%), Gaps = 7/372 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 372 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 314
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 313 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 257
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 256 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 197
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 196 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 137
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 136 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 77
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 76 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 17
Query: 653 cttgttcgccaa 664
||||||||||||
Sbjct: 16 cttgttcgccaa 5
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 428 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 376
>gb|CF757376.1|CF757376 DSAF1_17_B08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_17_B08_A011 3', mRNA sequence
Length = 528
Score = 498 bits (251), Expect = e-139
Identities = 342/368 (92%), Gaps = 7/368 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 364 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 306
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 305 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 249
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 248 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 189
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 188 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 129
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 128 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 69
Query: 596 ggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagtctt 652
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 68 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 9
Query: 653 cttgttcg 660
||||||||
Sbjct: 8 cttgttcg 1
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 420 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 368
>gb|BE125185.1|BE125185 DG1_14_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 431
Score = 484 bits (244), Expect = e-135
Identities = 303/322 (94%), Gaps = 3/322 (0%)
Strand = Plus / Minus
Query: 544 gcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtcttggtagtag 603
|||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |
Sbjct: 431 gcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttg 372
Query: 604 agaggaccacagccgagtccttt---gcagctggctggatcgtcacagtcttcttgttcg 660
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 371 agaggaccacagccgagtcctttccagcagctggctggatagtcacagtcttcttgttcg 312
Query: 661 ccaaacccgagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaact 720
|||| || ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 311 ccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaact 252
Query: 721 gcaccttggcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaa 780
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 251 gcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaa 192
Query: 781 cctgccagatcagatcccctggaacggttgccatttcccttcgccggagaagaggtgccg 840
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 191 cctgccagatcagatccccaggaacggttgccatttcccttcgccggagatgaggtgccg 132
Query: 841 cggcgtcgcctcgctctgttcc 862
||||||||| | ||||||||||
Sbjct: 131 cggcgtcgcgttgctctgttcc 110
>gb|AW924895.1|AW924895 WS1_72_B04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 424
Score = 454 bits (229), Expect = e-126
Identities = 312/336 (92%), Gaps = 4/336 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 341 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 283
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 282 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 226
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 225 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 166
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 165 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 106
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||
Sbjct: 105 ctccttgcgcatcacagacttgtgactgagcttagcaggggtgttctgcttcttggtctt 46
Query: 596 ggtagtagagaggaccacagccgagtcctttgcagc 631
|||||| |||||||||||||||||||||||| ||||
Sbjct: 45 ggtagttgagaggaccacagccgagtcctttccagc 10
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 397 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 345
>gb|BI098562.1|BI098562 IP1_34_A07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 462
Score = 428 bits (216), Expect = e-118
Identities = 293/315 (93%), Gaps = 4/315 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 311 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 253
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 252 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 196
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 195 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 136
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 135 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 76
Query: 536 ctccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtctt 595
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 75 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 16
Query: 596 ggtagtagagaggac 610
|||||| ||||||||
Sbjct: 15 ggtagttgagaggac 1
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 367 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 315
>gb|CF481330.1|CF481330 POL1_71_G11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_G11_A002 3', mRNA sequence
Length = 464
Score = 353 bits (178), Expect = 2e-095
Identities = 243/261 (93%), Gaps = 4/261 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 257 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 199
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 198 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 142
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 141 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 82
Query: 476 atcaggcctgtagtagttgtcactaacctggtttttcacagccttggccatcttgcggaa 535
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 81 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 22
Query: 536 ctccttgcgcatcacagactt 556
|||||||||||||||||||||
Sbjct: 21 ctccttgcgcatcacagactt 1
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 313 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 261
>gb|CW473046.1|CW473046 fsbb001f228e07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228e07, DNA
sequence
Length = 766
Score = 276 bits (139), Expect = 3e-072
Identities = 195/210 (92%), Gaps = 4/210 (1%)
Strand = Plus / Minus
Query: 296 caagtctcaaaactgttggaacatagataaatataagctgggactacgagcaccaacatg 355
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 464 caagtctcaaaactgttggaacatagataaacataagctgggactatgagcaccaaca-g 406
Query: 356 ccccctgacagaacacaaacttagcgcttaggactgcctgttcttcttcttgacaccgga 415
|||| |||||||||| | ||||| |||| || |||||||||||||||||||||||| ||
Sbjct: 405 ccccttgacagaaca--agcttagtgcttggg-ctgcctgttcttcttcttgacaccaga 349
Query: 416 cttggcaacctggaggctgaggtacaccgagctcagcctagcaagagctggcttggtcag 475
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 348 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 289
Query: 476 atcaggcctgtagtagttgtcactaacctg 505
||||||||||||||||||||| ||||||||
Sbjct: 288 atcaggcctgtagtagttgtcgctaacctg 259
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 520 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 468
>gb|CL170814.1|CL170814 104_372_10888963_116_31779_019 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10888963, DNA
sequence
Length = 652
Score = 264 bits (133), Expect = 1e-068
Identities = 151/157 (96%)
Strand = Plus / Minus
Query: 669 gagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactgcaccttg 728
||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 396 gagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacctta 337
Query: 729 gcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaacctgccag 788
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccag 277
Query: 789 atcagatcccctggaacggttgccatttcccttcgcc 825
||||||||||| |||||||||||||||||||||||||
Sbjct: 276 atcagatccccaggaacggttgccatttcccttcgcc 240
Score = 200 bits (101), Expect = 2e-049
Identities = 127/135 (94%), Gaps = 3/135 (2%)
Strand = Plus / Minus
Query: 533 gaactccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggt 592
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 652 gaactccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggt 593
Query: 593 cttggtagtagagaggaccacagccgagtccttt---gcagctggctggatcgtcacagt 649
||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 592 cttggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagt 533
Query: 650 cttcttgttcgccaa 664
|||||||||||||||
Sbjct: 532 cttcttgttcgccaa 518
>gb|CW469883.1|CW469883 fsbb001f222m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222m21, DNA
sequence
Length = 574
Score = 264 bits (133), Expect = 1e-068
Identities = 151/157 (96%)
Strand = Plus / Minus
Query: 669 gagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactgcaccttg 728
||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 370 gagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacctta 311
Query: 729 gcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaacctgccag 788
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccag 251
Query: 789 atcagatcccctggaacggttgccatttcccttcgcc 825
||||||||||| |||||||||||||||||||||||||
Sbjct: 250 atcagatccccaggaacggttgccatttcccttcgcc 214
Score = 121 bits (61), Expect = 1e-025
Identities = 78/83 (93%), Gaps = 3/83 (3%)
Strand = Plus / Minus
Query: 585 ttcttggtcttggtagtagagaggaccacagccgagtccttt---gcagctggctggatc 641
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 574 ttcttggtcttggtagttgagaggaccacagccgagtcctttccagcagctggctggata 515
Query: 642 gtcacagtcttcttgttcgccaa 664
|||||||||||||||||||||||
Sbjct: 514 gtcacagtcttcttgttcgccaa 492
>gb|CW287218.1|CW287218 104_765_11411301_116_35521_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411301, DNA
sequence
Length = 600
Score = 147 bits (74), Expect = 2e-033
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 389 ctgcctgttcttcttcttgacaccggacttggcaacctggaggctgaggtacaccgagct 448
||||||||||||||||||||| || |||||||||||||||||||| ||||||| | ||
Sbjct: 336 ctgcctgttcttcttcttgactccagacttggcaacctggaggctccggtacactgcact 395
Query: 449 cagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtcac 498
|||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 396 cagccttgcaagagctggcttggtaagatcaggcctgtagtagttgtcac 445
>gb|CW287219.1|CW287219 104_765_11411301_148_35525_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411301, DNA
sequence
Length = 672
Score = 147 bits (74), Expect = 2e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 389 ctgcctgttcttcttcttgacaccggacttggcaacctggaggctgaggtacaccgagct 448
||||||||||||||||||||| || |||||||||||||||||||| ||||||| | ||
Sbjct: 427 ctgcctgttcttcttcttgactccagacttggcaacctggaggctccggtacactgcact 368
Query: 449 cagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtcac 498
|||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 367 cagccttgcaagagctggcttggtaagatcaggcctgtagtagttgtcac 318
>gb|BE356605.1|BE356605 DG1_126_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 100
Score = 135 bits (68), Expect = 8e-030
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 493 tgtcactaacctggtttttcacagccttggccatcttgcggaactccttgcgcatcacag 552
|||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 100 tgtcgctaacctgatttttcacggccttagccatcttgcggaactccttgcgcatcacag 41
Query: 553 acttgtggctgagcttcgcaggtgcgttctgcttcttggt 592
||||||| |||||||| ||||||| ||||||||| |||||
Sbjct: 40 acttgtgactgagcttagcaggtgtgttctgctttttggt 1
>gb|CW213053.1|CW213053 104_644_11191343_148_37031_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191343, DNA
sequence
Length = 675
Score = 91.7 bits (46), Expect = 1e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 664 aacccgagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactgca 723
|||| ||||| ||| ||||||| | |||||||| ||||| ||||||||| ||||||| |
Sbjct: 472 aaccagagtgcttgtaggagtgaacattgtagagattgttgggctccttgctgaactgaa 413
Query: 724 ccttggcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaacct 783
|||| |||||||| ||||| ||||| || | ||||||||||| ||||||||||| | ||
Sbjct: 412 ccttcgcattgccattgccaaactgtttgatcaggaaggagttattcttcctcacgatct 353
Query: 784 gccaga 789
||||||
Sbjct: 352 gccaga 347
Score = 42.1 bits (21), Expect = 0.089
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 537 tccttgcgcatcacagacttgtggctgagcttcgcaggtgcgttctgcttcttggtcttg 596
||||||||||| |||||||||||| ||| | ||||| ||| |||||||| || |||
Sbjct: 675 tccttgcgcatgacagacttgtggtggaggctggcaggcttgttttgcttctttgttttg 616
Query: 597 gtagtagagaggaccac 613
|| || |||||||||||
Sbjct: 615 gttgtcgagaggaccac 599
>gb|CW213052.1|CW213052 104_644_11191343_116_37030_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191343, DNA
sequence
Length = 586
Score = 79.8 bits (40), Expect = 4e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 513 acagccttggccatcttgcggaactccttgcgcatcacagacttgtgg 560
||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 189 acagcctaggccatcttgcggaactccttgcgcatgacagacttgtgg 236
Score = 60.0 bits (30), Expect = 4e-007
Identities = 102/126 (80%)
Strand = Plus / Plus
Query: 664 aacccgagtgtttgaaggagtggatgttgtagaggttgttcggctccttggtgaactgca 723
|||| ||||| ||| ||||||| | |||| ||| ||||| ||||||||| ||||||| |
Sbjct: 417 aaccagagtgcttgtaggagtgaacattgtggagattgttgggctccttgctgaactgaa 476
Query: 724 ccttggcattgccgttgccgaactgcttcacaaggaaggagttgttcttcctcacaacct 783
|| | |||||||| |||| ||||| || | |||||||||| ||||||||||| | ||
Sbjct: 477 ccgtcgcattgccagtgccaaactgattgatcaggaaggagtgattcttcctcacgatct 536
Query: 784 gccaga 789
||||||
Sbjct: 537 gccaga 542
>gb|CW469882.1|CW469882 fsbb001f222m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222m21, DNA
sequence
Length = 721
Score = 79.8 bits (40), Expect = 4e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 501 acctggtttttcacagccttggccatcttgcggaactccttgcgcatcacagactt 556
||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 666 acctgatttttcacgggcttagccatcttgcggaactccttgcgcatcacagactt 721
>gb|CF481415.1|CF481415 POL1_71_G11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_G11_A002 5', mRNA sequence
Length = 590
Score = 77.8 bits (39), Expect = 2e-012
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 783 tgccagatcagatcccctggaacggttgccatttcccttcgcc 825
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 590 tgccagatcagatccccaggaacggttgccatttcccttcgcc 548
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 824 ccggagaagaggtgccgcggcgtcgcctcgctctgttcc 862
||||||| |||||||||||||||||| | ||||||||||
Sbjct: 512 ccggagatgaggtgccgcggcgtcgcgttgctctgttcc 474
>gb|CL159906.1|CL159906 104_350_10804599_116_31823_039 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804599, DNA
sequence
Length = 759
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 683 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 735
>gb|CW473047.1|CW473047 fsbb001f228e07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228e07, DNA
sequence
Length = 619
Score = 65.9 bits (33), Expect = 6e-009
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 253 aatgacacacagcagcatcttaacatggtttgctc-agttctaacaagtctca 304
|||||||||| ||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 540 aatgacacacggcagcatcttaacatggtttgttctagttctagcaagtctca 592
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 296 caagtctcaaaactgttggaacat 319
||||||||||||||||||||||||
Sbjct: 596 caagtctcaaaactgttggaacat 619
>gb|CW066109.1|CW066109 104_313_10523512_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523512, DNA
sequence
Length = 584
Score = 52.0 bits (26), Expect = 9e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 517 ccttggccatcttgcggaactccttgcgcatcacagacttgt 558
|||||||||||||| |||| |||||| |||| ||||||||||
Sbjct: 200 ccttggccatcttgtggaattccttgtgcatgacagacttgt 159
>gb|CW478973.1|CW478973 fsbb001f237c09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237c09, DNA
sequence
Length = 494
Score = 52.0 bits (26), Expect = 9e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 517 ccttggccatcttgcggaactccttgcgcatcacagacttgt 558
|||||||||||||| |||| |||||| |||| ||||||||||
Sbjct: 311 ccttggccatcttgtggaattccttgtgcatgacagacttgt 270
>gb|BH245474.1|BH245474 pSB0708 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0708, DNA sequence
Length = 923
Score = 44.1 bits (22), Expect = 0.023
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 517 ccttggccatcttgcggaactccttgcgcatcacagacttgt 558
|||||||||||||| |||| |||||| |||| | ||||||||
Sbjct: 384 ccttggccatcttgtggaagtccttgtgcatgaaagacttgt 343
>gb|AW746106.1|AW746106 WS1_39_H12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 529
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 gtgccgcggcgtcgcctcgctc 856
||||||||||||||||||||||
Sbjct: 45 gtgccgcggcgtcgcctcgctc 24
>gb|BE125106.1|BE125106 DG1_16_B08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 427
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 gtgccgcggcgtcgcctcgctc 856
||||||||||||||||||||||
Sbjct: 111 gtgccgcggcgtcgcctcgctc 90
>gb|BE595081.1|BE595081 PI1_45_D09.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 gtgccgcggcgtcgcctcgctc 856
||||||||||||||||||||||
Sbjct: 110 gtgccgcggcgtcgcctcgctc 89
>gb|CB928442.1|CB928442 ABA1_15_G12.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_G12_A012 5', mRNA sequence
Length = 609
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 835 gtgccgcggcgtcgcctcgctc 856
||||||||||||||||||||||
Sbjct: 119 gtgccgcggcgtcgcctcgctc 98
>gb|BZ330788.1|BZ330788 hv97c11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv97c11 5', DNA sequence
Length = 173
Score = 42.1 bits (21), Expect = 0.089
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 aaggatattgttaaaaatagtttaa 59
|||||||| ||||||||||||||||
Sbjct: 115 aaggatatcgttaaaaatagtttaa 139
>gb|BZ338637.1|BZ338637 ia96g12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia96g12 5', DNA sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 46 taaaaatagtttaaacatgca 66
|||||||||||||||||||||
Sbjct: 341 taaaaatagtttaaacatgca 321
>gb|BZ340465.1|BZ340465 ic39b02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic39b02 5', DNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 46 taaaaatagtttaaacatgca 66
|||||||||||||||||||||
Sbjct: 299 taaaaatagtttaaacatgca 279
>gb|CW084113.1|CW084113 104_426_10945584_116_32441_086 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
10945584, DNA sequence
Length = 525
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 taaaaatagtttaaacatgca 66
|||||||||||||||||||||
Sbjct: 52 taaaaatagtttaaacatgca 72
>gb|CW313819.1|CW313819 104_804_11471491_148_35796_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471491, DNA
sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 taaaaatagtttaaacatgca 66
|||||||||||||||||||||
Sbjct: 130 taaaaatagtttaaacatgca 150
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 899 cgtacctgcccgggcggccgc 919
|||||||||||||||||||||
Sbjct: 99 cgtacctgcccgggcggccgc 119
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 900 gtacctgcccgggcggccgc 919
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 900 gtacctgcccgggcggccgc 919
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 900 gtacctgcccgggcggccgc 919
||||||||||||||||||||
Sbjct: 244 gtacctgcccgggcggccgc 225
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 900 gtacctgcccgggcggccgc 919
||||||||||||||||||||
Sbjct: 21 gtacctgcccgggcggccgc 2
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 900 gtacctgcccgggcggccgc 919
||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgc 32
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 900 gtacctgcccgggcggccgc 919
||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgc 84
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 900 gtacctgcccgggcggccgc 919
||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgc 21
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 261,622
Number of Sequences: 832831
Number of extensions: 261622
Number of successful extensions: 73541
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73425
Number of HSP's gapped (non-prelim): 82
length of query: 919
length of database: 491,359,669
effective HSP length: 20
effective length of query: 899
effective length of database: 474,703,049
effective search space: 426758041051
effective search space used: 426758041051
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)