BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.680
(461 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN140003.1|CN140003 OX1_33_A06.g1_A002 Oxidatively-stres... 252 2e-065
gb|BG488301.1|BG488301 RHIZ2_61_H08.b1_A003 Rhizome2 (RHIZ2... 244 6e-063
gb|CD429771.1|CD429771 ETH1_15_F09.g1_A002 Ethylene-treated... 244 6e-063
gb|CD462841.1|CD462841 ETH1_40_C12.g2_A002 Ethylene-treated... 244 6e-063
gb|BQ656170.1|BQ656170 pRC1191 Sorghum halepense rhizome cD... 232 2e-059
gb|CN134367.1|CN134367 OX1_26_A06.b1_A002 Oxidatively-stres... 232 2e-059
gb|CN124659.1|CN124659 RHOH1_6_D09.b1_A002 Acid- and alkali... 224 6e-057
gb|CN139919.1|CN139919 OX1_33_A06.b1_A002 Oxidatively-stres... 224 6e-057
gb|CN139920.1|CN139920 OX1_33_A07.b1_A002 Oxidatively-stres... 224 6e-057
gb|CD428339.1|CD428339 ETH1_31_C11.b1_A002 Ethylene-treated... 208 3e-052
gb|BE601008.1|BE601008 PI1_95_G08.b1_A002 Pathogen induced ... 200 8e-050
gb|CX617340.1|CX617340 GABR1_33_D12.b1_A002 GA- or brassino... 198 3e-049
gb|CD233971.1|CD233971 SS1_5_A05.g1_A012 Salt-stressed seed... 196 1e-048
gb|CX606837.1|CX606837 ANR1_5_F02.b1_A002 Anaerobic roots S... 190 8e-047
gb|CN129658.1|CN129658 RHOH1_36_D10.g1_A002 Acid- and alkal... 178 3e-043
gb|CX610883.1|CX610883 ANR1_21_H06.b1_A002 Anaerobic roots ... 172 2e-041
gb|CN125984.1|CN125984 RHOH1_14_B06.g1_A002 Acid- and alkal... 151 7e-035
gb|CN124745.1|CN124745 RHOH1_6_D09.g1_A002 Acid- and alkali... 149 3e-034
gb|CN137652.1|CN137652 OX1_58_E05.g1_A002 Oxidatively-stres... 143 2e-032
gb|CN129213.1|CN129213 RHOH1_34_D08.b3_A002 Acid- and alkal... 135 4e-030
gb|CN129567.1|CN129567 RHOH1_36_D10.b3_A002 Acid- and alkal... 135 4e-030
gb|CX621437.1|CX621437 GABR1_58_C11.b1_A002 GA- or brassino... 129 2e-028
gb|CF430418.1|CF430418 PH1_28_A06.b1_A002 Phosphorous-defic... 125 4e-027
gb|CN151446.1|CN151446 WOUND1_75_B06.g1_A002 Wounded leaves... 119 2e-025
gb|CX617351.1|CX617351 GABR1_33_F04.b1_A002 GA- or brassino... 117 9e-025
gb|BG411530.1|BG411530 EM1_57_C04.b1_A002 Embryo 1 (EM1) So... 113 1e-023
gb|BG557831.1|BG557831 EM1_53_H08.b1_A002 Embryo 1 (EM1) So... 113 1e-023
gb|BG558789.1|BG558789 RHIZ2_56_F01.b1_A003 Rhizome2 (RHIZ2... 101 5e-020
gb|CX621609.1|CX621609 GABR1_59_D02.b1_A002 GA- or brassino... 101 5e-020
gb|CN151363.1|CN151363 WOUND1_75_B06.b1_A002 Wounded leaves... 94 1e-017
gb|CN137970.1|CN137970 OX1_61_A05.b1_A002 Oxidatively-stres... 86 3e-015
gb|CN151847.1|CN151847 WOUND1_78_C04.b1_A002 Wounded leaves... 74 1e-011
gb|AW285949.2|AW285949 LG1_255_C11.b1_A002 Light Grown 1 (L... 72 5e-011
gb|BF588045.1|BF588045 FM1_37_A09.b1_A003 Floral-Induced Me... 72 5e-011
gb|CF484164.1|CF484164 POL1_3_C06.g1_A002 Pollen Sorghum bi... 72 5e-011
gb|CX607004.1|CX607004 ANR1_6_D08.b1_A002 Anaerobic roots S... 72 5e-011
gb|CF485874.1|CF485874 POL1_34_F04.b1_A002 Pollen Sorghum b... 70 2e-010
gb|CN130256.1|CN130256 RHOH1_40_F09.b1_A002 Acid- and alkal... 70 2e-010
gb|CX609876.1|CX609876 ANR1_15_F10.b1_A002 Anaerobic roots ... 70 2e-010
gb|BF481075.1|BF481075 FM1_16_B02.b1_A003 Floral-Induced Me... 68 8e-010
gb|CF480057.1|CF480057 POL1_63_B03.g1_A002 Pollen Sorghum b... 68 8e-010
gb|CW048707.1|CW048707 104_287_10513580_114_30211 Sorghum m... 62 5e-008
gb|CW246129.1|CW246129 104_707_11221215_148_35086_064 Sorgh... 62 5e-008
gb|CW447231.1|CW447231 fsbb001f180e05k0 Sorghum methylation... 62 5e-008
gb|BG241629.1|BG241629 RHIZ2_17_H09.g1_A003 Rhizome2 (RHIZ2... 62 5e-008
gb|CF430393.1|CF430393 PH1_28_C12.b1_A002 Phosphorous-defic... 62 5e-008
gb|CW246128.1|CW246128 104_707_11221215_116_35082_064 Sorgh... 58 7e-007
gb|AW923865.1|AW923865 DG1_60_H12.g1_A002 Dark Grown 1 (DG1... 58 7e-007
gb|BE359992.1|BE359992 DG1_60_H12.g2_A002 Dark Grown 1 (DG1... 58 7e-007
gb|BG410767.1|BG410767 EM1_25_E07.g1_A002 Embryo 1 (EM1) So... 56 3e-006
gb|CX614892.1|CX614892 GABR1_17_A09.b1_A002 GA- or brassino... 54 1e-005
gb|BG102584.1|BG102584 RHIZ2_34_G12.g1_A003 Rhizome2 (RHIZ2... 50 2e-004
gb|BG947965.1|BG947965 IP1_7_F10.b1_A002 Immature pannicle ... 48 7e-004
gb|CN131244.1|CN131244 RHOH1_46_F06.g1_A002 Acid- and alkal... 48 7e-004
gb|CF675663.1|CF675663 MtN3 Subtractive cDNA library from s... 48 7e-004
gb|DR831467.1|DR831467 MM71 Sorghum bicolor greenbug-respon... 48 7e-004
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 48 7e-004
gb|AW924717.1|AW924717 WS1_71_A04.b1_A002 Water-stressed 1 ... 46 0.003
gb|BM326323.1|BM326323 PIC1_55_F01.b1_A002 Pathogen-infecte... 46 0.003
gb|CF430471.1|CF430471 PH1_28_A06.g1_A002 Phosphorous-defic... 46 0.003
gb|CN128178.1|CN128178 RHOH1_27_B12.g1_A002 Acid- and alkal... 46 0.003
gb|DR831427.1|DR831427 MT54 Sorghum bicolor greenbug-respon... 46 0.003
gb|DR831556.2|DR831556 MT75 Sorghum bicolor greenbug-respon... 46 0.003
gb|DV162814.1|DV162814 P1-N10 Sorghum bicolor greenbug-resp... 46 0.003
gb|DV162815.1|DV162815 P3-J15 Sorghum bicolor greenbug-resp... 46 0.003
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 44 0.011
gb|BF176979.1|BF176979 EM1_2_A12.g1_A002 Embryo 1 (EM1) Sor... 42 0.044
gb|BF587369.1|BF587369 FM1_35_E07.b1_A003 Floral-Induced Me... 42 0.044
gb|CD234631.1|CD234631 SS1_17_E12.b1_A012 Salt-stressed see... 42 0.044
gb|CN139358.1|CN139358 OX1_21_C09.g1_A002 Oxidatively-stres... 42 0.044
gb|CN142915.1|CN142915 WOUND1_13_C08.b1_A002 Wounded leaves... 42 0.044
gb|CX606929.1|CX606929 ANR1_5_F02.g1_A002 Anaerobic roots S... 42 0.044
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 42 0.044
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.044
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.17
gb|CX622028.1|CX622028 GABR1_61_C12.g2_A002 GA- or brassino... 40 0.17
gb|DR831428.1|DR831428 MM77 Sorghum bicolor greenbug-respon... 40 0.17
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.17
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 40 0.17
>gb|CN140003.1|CN140003 OX1_33_A06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_A06_A002 5', mRNA sequence
Length = 741
Score = 252 bits (127), Expect = 2e-065
Identities = 172/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 gtacataccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 622
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 621 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 562
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||| || ||||| ||||||||||| || |||||||||||
Sbjct: 561 atcacctcctcccttggcagccttggcgtcattggccaaccttgtcctggcgtagtccag 502
Query: 436 ggagtac 442
|||||||
Sbjct: 501 ggagtac 495
>gb|BG488301.1|BG488301 RHIZ2_61_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 563
Score = 244 bits (123), Expect = 6e-063
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct: 359 gtacaaaccacggtaaacgatgattccaacacaagagatgttgaatccacggtaaagccc 300
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 299 agcaataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 240
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 239 atcacctcctcccttggcagccttggcgtcattggccaaccttgtcctggcatagtccag 180
Query: 436 ggagtac 442
|||||||
Sbjct: 179 ggagtac 173
>gb|CD429771.1|CD429771 ETH1_15_F09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_15_F09_A002 5', mRNA sequence
Length = 741
Score = 244 bits (123), Expect = 6e-063
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 201
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 200 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 141
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 140 atcacctcctcccttggcagccttggcgtcattggccaaccttgtcctggcatagtccag 81
Query: 436 ggagtac 442
|||||||
Sbjct: 80 ggagtac 74
>gb|CD462841.1|CD462841 ETH1_40_C12.g2_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_40_C12_A002 5', mRNA sequence
Length = 702
Score = 244 bits (123), Expect = 6e-063
Identities = 171/187 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 554
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 553 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 494
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 493 atcacctcctcccttggcagccttggcgtcattggccaaccttgtcctggcatagtccag 434
Query: 436 ggagtac 442
|||||||
Sbjct: 433 ggagtac 427
>gb|BQ656170.1|BQ656170 pRC1191 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1191, mRNA sequence
Length = 1012
Score = 232 bits (117), Expect = 2e-059
Identities = 153/165 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 169 gtacagaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 110
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 109 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 50
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgt 420
||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 49 atcacctcctcccttggcagccttggcgtcattggccaaccttgt 5
>gb|CN134367.1|CN134367 OX1_26_A06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_A06_A002 3', mRNA sequence
Length = 836
Score = 232 bits (117), Expect = 2e-059
Identities = 165/181 (91%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 122
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 121 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 62
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
||||||||||||||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct: 61 atcacctcctcccttggcagccttggcgtcattggccaaccttgtcctggcatagtccag 2
Query: 436 g 436
|
Sbjct: 1 g 1
>gb|CN124659.1|CN124659 RHOH1_6_D09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_D09_A002 3', mRNA sequence
Length = 829
Score = 224 bits (113), Expect = 6e-057
Identities = 152/165 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 173 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 114
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 113 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 54
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgt 420
||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 53 atcacctcctcccttggcagccttggcgtcattggccaaccttgt 9
>gb|CN139919.1|CN139919 OX1_33_A06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_A06_A002 3', mRNA sequence
Length = 829
Score = 224 bits (113), Expect = 6e-057
Identities = 152/165 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 173 gtacataccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 114
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 113 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 54
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgt 420
||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 53 atcacctcctcccttggcagccttggcgtcattggccaaccttgt 9
>gb|CN139920.1|CN139920 OX1_33_A07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_A07_A002 3', mRNA sequence
Length = 827
Score = 224 bits (113), Expect = 6e-057
Identities = 152/165 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 171 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 112
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 111 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 52
Query: 376 ttcacctcctcccttggcagccttcgcatcattagccaaccttgt 420
||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 51 atcacctcctcccttggcagccttggcgtcattggccaaccttgt 7
>gb|CD428339.1|CD428339 ETH1_31_C11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_C11_A002 3', mRNA sequence
Length = 809
Score = 208 bits (105), Expect = 3e-052
Identities = 141/153 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 154 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 95
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 94 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 35
Query: 376 ttcacctcctcccttggcagccttcgcatcatt 408
||||||||||||||||||||||| || |||||
Sbjct: 34 atcacctcctcccttggcagccttggcgtcatt 2
>gb|BE601008.1|BE601008 PI1_95_G08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 362
Score = 200 bits (101), Expect = 8e-050
Identities = 149/165 (90%)
Strand = Plus / Minus
Query: 278 attccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagacttgagt 337
||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 362 attccaacacaacagatgttaaatccacggtaaagcccaccgataccatcagatttgagt 303
Query: 338 gtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggcagcc 397
||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 302 gtcttccggtagacatccacaagaccattgaattgcctatcacctcctcccttggcagcc 243
Query: 398 ttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
|| || ||||| ||||||||||| || || |||||||||||||||
Sbjct: 242 ttggcgtcattggccaaccttgtcctggcatagtccagggagtac 198
>gb|CX617340.1|CX617340 GABR1_33_D12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_D12_A002 3', mRNA sequence
Length = 806
Score = 198 bits (100), Expect = 3e-049
Identities = 133/144 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 150 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 91
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 90 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaatcgcct 31
Query: 376 ttcacctcctcccttggcagcctt 399
|||||||||||||||||||||||
Sbjct: 30 atcacctcctcccttggcagcctt 7
>gb|CD233971.1|CD233971 SS1_5_A05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_5_A05_A012 5', mRNA sequence
Length = 657
Score = 196 bits (99), Expect = 1e-048
Identities = 137/150 (91%)
Strand = Plus / Minus
Query: 293 atgttaaatccacggtaaagcccagcaataccatcagacttgagtgtcttgcggtagaca 352
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 657 atgttaaatccacggtaaagcccagcgataccatcagatttgagtgtcttgcggtagaca 598
Query: 353 tcgacaagcccattgaactgcctttcacctcctcccttggcagccttcgcatcattagcc 412
|| ||||| |||||||| ||||| |||||||||||||||||||||| || ||||| |||
Sbjct: 597 tccacaagaccattgaattgcctatcacctcctcccttggcagcctnggcgtcattggcc 538
Query: 413 aaccttgttctcgcgtagtccagggagtac 442
|||||||| || || |||||||||||||||
Sbjct: 537 aaccttgtcctggcatagtccagggagtac 508
>gb|CX606837.1|CX606837 ANR1_5_F02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_F02_A002 3', mRNA sequence
Length = 844
Score = 190 bits (96), Expect = 8e-047
Identities = 126/136 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 136 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 77
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 76 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 17
Query: 376 ttcacctcctcccttg 391
|||||||||||||||
Sbjct: 16 atcacctcctcccttg 1
>gb|CN129658.1|CN129658 RHOH1_36_D10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_D10_A002 5', mRNA sequence
Length = 770
Score = 178 bits (90), Expect = 3e-043
Identities = 129/142 (90%)
Strand = Plus / Minus
Query: 301 tccacggtaaagcccagcaataccatcagacttgagtgtcttgcggtagacatcgacaag 360
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 770 tccacggtaaagcccagcgataccatcagatttgagtgtcttgcggtagacatccacaag 711
Query: 361 cccattgaactgcctttcacctcctcccttggcagccttcgcatcattagccaaccttgt 420
|||||||| ||||| |||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 710 accattgaattgcctatcacctcctcccttggcagcctgggcgtcattggccaaccttgt 651
Query: 421 tctcgcgtagtccagggagtac 442
|| || |||||||||||||||
Sbjct: 650 cctggcatagtccagggagtac 629
>gb|CX610883.1|CX610883 ANR1_21_H06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_H06_A002 3', mRNA sequence
Length = 795
Score = 172 bits (87), Expect = 2e-041
Identities = 117/127 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 127 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 68
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 67 agcgataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcct 8
Query: 376 ttcacct 382
||||||
Sbjct: 7 atcacct 1
>gb|CN125984.1|CN125984 RHOH1_14_B06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_B06_A002 5', mRNA sequence
Length = 842
Score = 151 bits (76), Expect = 7e-035
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct: 842 ataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcctatca 783
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||||||||||||||||| || ||||| ||||||||||| || || ||||||||||||
Sbjct: 782 cctcctcccttggcagcctnggcgtcattggccaaccttgtcctggcatagtccagggag 723
Query: 440 tac 442
|||
Sbjct: 722 tac 720
>gb|CN124745.1|CN124745 RHOH1_6_D09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_D09_A002 5', mRNA sequence
Length = 844
Score = 149 bits (75), Expect = 3e-034
Identities = 111/123 (90%)
Strand = Plus / Minus
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct: 842 ataccatcagatttgagtgtcttgcggtagacatccacaagaccattgaattgcctatca 783
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||||||||||||||||| || ||||| ||||||||||| || || ||||||||||||
Sbjct: 782 cctcctcccttggcagcctaggcgtcattggccaaccttgtcctggcatagtccagggag 723
Query: 440 tac 442
|||
Sbjct: 722 tac 720
>gb|CN137652.1|CN137652 OX1_58_E05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_E05_A002 5', mRNA sequence
Length = 786
Score = 143 bits (72), Expect = 2e-032
Identities = 105/116 (90%)
Strand = Plus / Minus
Query: 327 cagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctc 386
|||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 786 cagatttgagtgtcttgcggtagacatccacaagaccattgaattgcctatcacctcctc 727
Query: 387 ccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
||||||||||||| || ||||| ||||||||||| || || |||||||||||||||
Sbjct: 726 ccttggcagccttggcgtcattggccaaccttgtcctggcatagtccagggagtac 671
>gb|CN129213.1|CN129213 RHOH1_34_D08.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_D08_A002 3', mRNA sequence
Length = 818
Score = 135 bits (68), Expect = 4e-030
Identities = 86/92 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 92 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 33
Query: 316 agcaataccatcagacttgagtgtcttgcggt 347
||| ||||||||||| ||||||||||||||||
Sbjct: 32 agcgataccatcagatttgagtgtcttgcggt 1
>gb|CN129567.1|CN129567 RHOH1_36_D10.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_D10_A002 3', mRNA sequence
Length = 775
Score = 135 bits (68), Expect = 4e-030
Identities = 86/92 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 92 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 33
Query: 316 agcaataccatcagacttgagtgtcttgcggt 347
||| ||||||||||| ||||||||||||||||
Sbjct: 32 agcgataccatcagatttgagtgtcttgcggt 1
>gb|CX621437.1|CX621437 GABR1_58_C11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_58_C11_A002 3', mRNA sequence
Length = 745
Score = 129 bits (65), Expect = 2e-028
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 89 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 30
Query: 316 agcaataccatcagacttgagtgtcttgc 344
||| ||||||||||| |||||||||||||
Sbjct: 29 agcgataccatcagatttgagtgtcttgc 1
>gb|CF430418.1|CF430418 PH1_28_A06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_28_A06_A002 3', mRNA sequence
Length = 744
Score = 125 bits (63), Expect = 4e-027
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 87 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 28
Query: 316 agcaataccatcagacttgagtgtctt 342
||| ||||||||||| |||||||||||
Sbjct: 27 agcgataccatcagatttgagtgtctt 1
>gb|CN151446.1|CN151446 WOUND1_75_B06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_75_B06_A002 5', mRNA sequence
Length = 811
Score = 119 bits (60), Expect = 2e-025
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 343 gcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggcagccttcgc 402
|||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 811 gcggtagacatccacaagaccattgaattgcctatcacctcctcccttggcagccttggc 752
Query: 403 atcattagccaaccttgttctcgcgtagtccagggagtac 442
||||| ||||||||||| || || |||||||||||||||
Sbjct: 751 gtcattggccaaccttgtcctggcatagtccagggagtac 712
>gb|CX617351.1|CX617351 GABR1_33_F04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_F04_A002 3', mRNA sequence
Length = 740
Score = 117 bits (59), Expect = 9e-025
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 83 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 24
Query: 316 agcaataccatcagacttgagtg 338
||| ||||||||||| |||||||
Sbjct: 23 agcgataccatcagatttgagtg 1
>gb|BG411530.1|BG411530 EM1_57_C04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 456
Score = 113 bits (57), Expect = 1e-023
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 89 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 30
Query: 316 agcaataccatcagacttgag 336
||| ||||||||||| |||||
Sbjct: 29 agcgataccatcagatttgag 9
>gb|BG557831.1|BG557831 EM1_53_H08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 113 bits (57), Expect = 1e-023
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 89 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 30
Query: 316 agcaataccatcagacttgag 336
||| ||||||||||| |||||
Sbjct: 29 agcgataccatcagatttgag 9
>gb|BG558789.1|BG558789 RHIZ2_56_F01.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 262
Score = 101 bits (51), Expect = 5e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 356 acaagcccattgaactgcctttcacctcctcccttggcagccttcgcatcattagccaac 415
||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||
Sbjct: 259 acaagaccattgaattgcctatcacctcctcccttggcagccttggcgtcattggccaac 200
Query: 416 cttgttctcgcgtagtccagggagtac 442
||||| || || |||||||||||||||
Sbjct: 199 cttgtcctggcatagtccagggagtac 173
>gb|CX621609.1|CX621609 GABR1_59_D02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_59_D02_A002 3', mRNA sequence
Length = 745
Score = 101 bits (51), Expect = 5e-020
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 71 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 12
Query: 316 agcaataccat 326
||| |||||||
Sbjct: 11 agcgataccat 1
>gb|CN151363.1|CN151363 WOUND1_75_B06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_75_B06_A002 3', mRNA sequence
Length = 719
Score = 93.7 bits (47), Expect = 1e-017
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagccc 5
Query: 316 agc 318
|||
Sbjct: 4 agc 2
>gb|CN137970.1|CN137970 OX1_61_A05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_A05_A002 3', mRNA sequence
Length = 712
Score = 85.7 bits (43), Expect = 3e-015
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcc 314
||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 59 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggtaaagcc 1
>gb|CN151847.1|CN151847 WOUND1_78_C04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_78_C04_A002 3', mRNA sequence
Length = 722
Score = 73.8 bits (37), Expect = 1e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggt 308
||||| |||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct: 60 gtacaaaccacggtaaacgatgattccaacacaagagatgttaaatccacggt 8
>gb|AW285949.2|AW285949 LG1_255_C11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 420
Score = 71.9 bits (36), Expect = 5e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
||||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 337 acaatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactg 278
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||
Sbjct: 277 gcaagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttcttt 218
Query: 392 gcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
|||||||| |||||||| ||||| | ||| | |||||||||||
Sbjct: 217 gcagccttggcatcattggccaaacgtgtacgagcgtagtccag 174
>gb|BF588045.1|BF588045 FM1_37_A09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 562
Score = 71.9 bits (36), Expect = 5e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
||||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 514 acaatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactg 455
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||
Sbjct: 454 gcaagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttcttt 395
Query: 392 gcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
|||||||| |||||||| ||||| | ||| | |||||||||||
Sbjct: 394 gcagccttggcatcattggccaaacgtgtacgagcgtagtccag 351
>gb|CF484164.1|CF484164 POL1_3_C06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_C06_A002 5', mRNA sequence
Length = 600
Score = 71.9 bits (36), Expect = 5e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
||||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 562 acaatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactg 503
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||
Sbjct: 502 gcaagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttcttt 443
Query: 392 gcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
|||||||| |||||||| ||||| | ||| | |||||||||||
Sbjct: 442 gcagccttggcatcattggccaaacgtgtacgagcgtagtccag 399
>gb|CX607004.1|CX607004 ANR1_6_D08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_D08_A002 3', mRNA sequence
Length = 786
Score = 71.9 bits (36), Expect = 5e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
||||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 179 acaatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactg 120
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||
Sbjct: 119 gcaagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttcttt 60
Query: 392 gcagccttcgcatcattagccaaccttgttctcgcgtagtccag 435
|||||||| |||||||| ||||| | ||| | |||||||||||
Sbjct: 59 gcagccttggcatcattggccaaacgtgtacgagcgtagtccag 16
>gb|CF485874.1|CF485874 POL1_34_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_F04_A002 3', mRNA sequence
Length = 739
Score = 69.9 bits (35), Expect = 2e-010
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
||||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 144 acaatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactg 85
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||
Sbjct: 84 gcaagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttcttt 25
Query: 392 gcagccttcgcatcattagccaa 414
|||||||| |||||||| |||||
Sbjct: 24 gcagccttggcatcattggccaa 2
>gb|CN130256.1|CN130256 RHOH1_40_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F09_A002 3', mRNA sequence
Length = 828
Score = 69.9 bits (35), Expect = 2e-010
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
||||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 151 acaatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactg 92
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||
Sbjct: 91 gcaagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttcttt 32
Query: 392 gcagccttcgcatcattagccaa 414
|||||||| |||||||| |||||
Sbjct: 31 gcagccttggcatcattggccaa 9
>gb|CX609876.1|CX609876 ANR1_15_F10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_F10_A002 3', mRNA sequence
Length = 805
Score = 69.9 bits (35), Expect = 2e-010
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
||||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 152 acaatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactg 93
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||
Sbjct: 92 gcaagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttcttt 33
Query: 392 gcagccttcgcatcattagccaa 414
|||||||| |||||||| |||||
Sbjct: 32 gcagccttggcatcattggccaa 10
>gb|BF481075.1|BF481075 FM1_16_B02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 474
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 338 gtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggcagcc 397
||||||||||| ||||| ||||| |||||||||||||| ||||| || ||| ||||||
Sbjct: 448 gtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttctttgcagcc 389
Query: 398 ttcgcatcattagccaaccttgttctcgcgtagtccag 435
|| |||||||| ||||| | ||| | |||||||||||
Sbjct: 388 ttggcatcattggccaaacgtgtacgagcgtagtccag 351
>gb|CF480057.1|CF480057 POL1_63_B03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_63_B03_A002 5', mRNA sequence
Length = 710
Score = 67.9 bits (34), Expect = 8e-010
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 274 aatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagactt 333
||||||||| ||||| ||||| || ||||||||||| || || ||||||||||
Sbjct: 710 aatgattcccacacaagagatattgaatccacggtagaggccgcgaataccatcactggc 651
Query: 334 gagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggc 393
|| ||||||||||| ||||| ||||| |||||||||||||| ||||| || ||| ||
Sbjct: 650 aagggtcttgcggtaaacatcaacaagtccattgaactgcctctcaccacccttctttgc 591
Query: 394 agccttcgcatcattagccaaccttgttctcgcgtagtccag 435
|||||| |||||||| ||||| | ||| | |||||||||||
Sbjct: 590 agccttggcatcattggccaaacgtgtacgagcgtagtccag 549
>gb|CW048707.1|CW048707 104_287_10513580_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513580,
DNA sequence
Length = 569
Score = 61.9 bits (31), Expect = 5e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 17 gtacatagatcaaaccacactgtggacagattcca 51
|||||||||||||||||||||||||||| ||||||
Sbjct: 25 gtacatagatcaaaccacactgtggacatattcca 59
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||||||||||||| |||||| ||||
Sbjct: 226 cgctctaccgccgcagggtctgcataatgtactgacc 262
>gb|CW246129.1|CW246129 104_707_11221215_148_35086_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221215, DNA
sequence
Length = 645
Score = 61.9 bits (31), Expect = 5e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 17 gtacatagatcaaaccacactgtggacagattcca 51
|||||||||||||||||||||||||||| ||||||
Sbjct: 354 gtacatagatcaaaccacactgtggacatattcca 388
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||||||||||||| |||||| ||||
Sbjct: 555 cgctctaccgccgcagggtctgcataatgtactgacc 591
>gb|CW447231.1|CW447231 fsbb001f180e05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180e05, DNA
sequence
Length = 732
Score = 61.9 bits (31), Expect = 5e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 17 gtacatagatcaaaccacactgtggacagattcca 51
|||||||||||||||||||||||||||| ||||||
Sbjct: 604 gtacatagatcaaaccacactgtggacatattcca 570
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||||||||||||| |||||| ||||
Sbjct: 403 cgctctaccgccgcagggtctgcataatgtactgacc 367
>gb|BG241629.1|BG241629 RHIZ2_17_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 545
Score = 61.9 bits (31), Expect = 5e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 17 gtacatagatcaaaccacactgtggacagattcca 51
|||||||||||||||||||||||||||| ||||||
Sbjct: 503 gtacatagatcaaaccacactgtggacatattcca 469
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||||||||||||| |||||| ||||
Sbjct: 297 cgctctaccgccgcagggtctgcataatgtactgacc 261
>gb|CF430393.1|CF430393 PH1_28_C12.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_28_C12_A002 3', mRNA sequence
Length = 338
Score = 61.9 bits (31), Expect = 5e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 17 gtacatagatcaaaccacactgtggacagattcca 51
|||||||||||||||||||||||||||| ||||||
Sbjct: 263 gtacatagatcaaaccacactgtggacatattcca 229
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||| ||||||||| |||||| ||||
Sbjct: 62 cgctctaccgccgcaaggtctgcataatgtactgacc 26
>gb|CW246128.1|CW246128 104_707_11221215_116_35082_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221215, DNA
sequence
Length = 681
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||||||||||||| |||||| ||||
Sbjct: 547 cgctctaccgccgcagggtctgcataatgtactgacc 511
>gb|AW923865.1|AW923865 DG1_60_H12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 302
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||||||||||||| |||||| ||||
Sbjct: 108 cgctctaccgccgcagggtctgcataatgtactgacc 72
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 71 aataagggaagatacaggctaaaat 95
|||||||||||||||||||||||||
Sbjct: 267 aataagggaagatacaggctaaaat 243
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 atcaaaccacactgtggacagattcca 51
|||||||||||||||||||| ||||||
Sbjct: 301 atcaaaccacactgtggacatattcca 275
>gb|BE359992.1|BE359992 DG1_60_H12.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 228 cgctctaccgccgcagggtctgcatgatgtacagacc 264
||||||||||||||||||||||||| |||||| ||||
Sbjct: 395 cgctctaccgccgcagggtctgcataatgtactgacc 359
>gb|BG410767.1|BG410767 EM1_25_E07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 656
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaa 299
||||| |||||| ||||| |||||||||||||| ||||||||||
Sbjct: 44 gtacaaaccacggtaaacgatgattccaacacaagagatgttaa 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,636
Number of Sequences: 832831
Number of extensions: 102636
Number of successful extensions: 27939
Number of sequences better than 0.5: 79
Number of HSP's better than 0.5 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27820
Number of HSP's gapped (non-prelim): 119
length of query: 461
length of database: 491,359,669
effective HSP length: 19
effective length of query: 442
effective length of database: 475,535,880
effective search space: 210186858960
effective search space used: 210186858960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)