BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.662
(940 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW282770.2|AW282770 LG1_290_F10.g1_A002 Light Grown 1 (L... 293 1e-077
gb|CD220375.1|CD220375 CCC1_66_A11.g1_A007 Callus culture/c... 278 9e-073
gb|CD224999.1|CD224999 CCC1_37_E01.g1_A007 Callus culture/c... 278 9e-073
gb|BG933623.1|BG933623 OV1_32_F03.g1_A002 Ovary 1 (OV1) Sor... 276 3e-072
gb|CD229863.1|CD229863 CCC1_20_F03.g1_A007 Callus culture/c... 276 3e-072
gb|CF072304.1|CF072304 FE1_7_H02.b1_A002 Iron-deficient see... 276 3e-072
gb|BF586894.1|BF586894 FM1_31_G06.g1_A003 Floral-Induced Me... 266 3e-069
gb|BF480930.1|BF480930 FM1_15_B07.g1_A003 Floral-Induced Me... 264 1e-068
gb|BG240683.1|BG240683 OV1_37_A01.g1_A002 Ovary 1 (OV1) Sor... 256 3e-066
gb|CF758573.1|CF758573 DSAF1_33_G09.g1_A011 Drought-stresse... 256 3e-066
gb|CD220344.1|CD220344 CCC1_66_A12.g1_A007 Callus culture/c... 252 5e-065
gb|BG102456.1|BG102456 RHIZ2_33_B10.g1_A003 Rhizome2 (RHIZ2... 248 8e-064
gb|CF758075.1|CF758075 DSAF1_27_A01.g1_A011 Drought-stresse... 232 5e-059
gb|CF760718.1|CF760718 DSAF1_65_B10.b1_A011 Drought-stresse... 226 3e-057
gb|CF769505.1|CF769505 DSBF1_2_C09.b1_A010 Drought-stressed... 226 3e-057
gb|AI724124.1|AI724124 RHIZ1_7_A05.y2_A001 Rhizome1 (RHIZ1)... 192 4e-047
gb|AW564321.1|AW564321 LG1_290_F10.b1_A002 Light Grown 1 (L... 182 4e-044
gb|AW925034.1|AW925034 WS1_74_E12.b1_A002 Water-stressed 1 ... 182 4e-044
gb|CF771828.1|CF771828 DSBF1_24_F01.g1_A010 Drought-stresse... 182 4e-044
gb|CL180046.1|CL180046 104_389_10895726_148_31907_254 Sorgh... 172 4e-041
gb|BF586975.1|BF586975 FM1_31_G06.b1_A003 Floral-Induced Me... 141 1e-031
gb|BG240655.1|BG240655 OV1_32_F03.b1_A002 Ovary 1 (OV1) Sor... 139 5e-031
gb|BF481004.1|BF481004 FM1_15_B07.b1_A003 Floral-Induced Me... 133 3e-029
gb|BG240997.1|BG240997 OV1_37_A01.b1_A002 Ovary 1 (OV1) Sor... 133 3e-029
gb|AI724945.1|AI724945 RHIZ1_31_G09.y3_A001 Rhizome1 (RHIZ1... 131 1e-028
gb|AW679285.1|AW679285 WS1_23_E05.g1_A002 Water-stressed 1 ... 123 3e-026
gb|CF769590.1|CF769590 DSBF1_2_C09.g1_A010 Drought-stressed... 121 1e-025
gb|BZ347286.1|BZ347286 ic82e06.b2 WGS-SbicolorF (JM107 adap... 111 1e-022
gb|AW747641.1|AW747641 WS1_74_E12.g1_A002 Water-stressed 1 ... 103 3e-020
gb|CW171576.1|CW171576 104_582_11155817_116_36529_073 Sorgh... 98 2e-018
gb|AW679212.1|AW679212 WS1_23_E05.b1_A002 Water-stressed 1 ... 80 4e-013
gb|CD224891.1|CD224891 CCC1_37_E01.b1_A007 Callus culture/c... 78 2e-012
gb|CW134454.1|CW134454 104_518_11117315_116_34822_038 Sorgh... 66 6e-009
gb|CW134455.1|CW134455 104_518_11117315_148_34818_038 Sorgh... 66 6e-009
gb|CW345906.1|CW345906 104_849_11488746_116_36220_077 Sorgh... 66 6e-009
gb|CW345907.1|CW345907 104_849_11488746_148_36219_077 Sorgh... 66 6e-009
gb|CW468803.1|CW468803 fsbb001f221d07k0 Sorghum methylation... 56 6e-006
gb|BF586976.1|BF586976 FM1_31_G07.b1_A003 Floral-Induced Me... 54 2e-005
gb|BF586986.1|BF586986 FM1_31_H06.b1_A003 Floral-Induced Me... 54 2e-005
gb|CW280857.1|CW280857 104_756_11407856_116_35452_028 Sorgh... 52 9e-005
gb|CW434444.1|CW434444 fsbb001f150c08k0 Sorghum methylation... 52 9e-005
gb|CW434878.1|CW434878 fsbb001f150m14k0 Sorghum methylation... 52 9e-005
gb|CW243574.1|CW243574 104_704_11220122_116_37584_013 Sorgh... 48 0.001
gb|CW468802.1|CW468802 fsbb001f221d07f0 Sorghum methylation... 48 0.001
gb|CW391602.1|CW391602 fsbb001f077n05k0 Sorghum methylation... 44 0.023
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 44 0.023
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 42 0.091
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.091
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.091
gb|AW922075.1|AW922075 LG1_225_E08.b1_A002 Light Grown 1 (L... 40 0.36
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.36
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.36
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.36
>gb|AW282770.2|AW282770 LG1_290_F10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 293 bits (148), Expect = 1e-077
Identities = 403/488 (82%)
Strand = Plus / Plus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 14 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatgtggcacggg 73
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
||||||||||||||||| |||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 74 gaggacatgtaagggttgatgcgtccatgagcgcggtaggtcctgcgcctctgcttctga 133
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|| |||||||| || ||||| || ||||||||| | ||||| || | ||||| || |||
Sbjct: 134 gcctggttcacttgaatgtgcgacacatagagggtatccacatcaagaccttttacctca 193
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||| ||||| | || ||||| |||||||||
Sbjct: 194 gcattgctctctgcattcttgagaaggtccagaatgaatttagcagacttgacaggccag 253
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||||||||| |||||||||||||| || || || || || |||||||| |||||
Sbjct: 254 cgtccctgcccatttgagtggcgagacttagcctgagcagttcgcccaacaccaccacaa 313
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||| || || ||||||||||| ||||| |||||||||||||| | || |||
Sbjct: 314 tacctgcggaacgggatggcctgcttgtgggcaatcacatcctcaaggtaccttttggcc 373
Query: 719 ttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtggacc 778
||||| | | |||||| | || |||||||||||||| | |||||||||||||| ||
Sbjct: 374 ttggtgagtgacagcttcctgagggcaaaagctgtctcgcgggtgttcttgaagtgaaca 433
Query: 779 ctcaggtcccttcccatggccttggccgatttggtagggttgcccggctcctgcgagtac 838
| ||||| | |||||||||||||| || ||||| |||||| ||||||| |||||||
Sbjct: 434 cggaggtcacgacccatggccttggcggacttggtggggttggtcggctccctcgagtac 493
Query: 839 ttaaccat 846
|| |||||
Sbjct: 494 ttcaccat 501
>gb|CD220375.1|CD220375 CCC1_66_A11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_66_A11_A007 5', mRNA sequence
Length = 651
Score = 278 bits (140), Expect = 9e-073
Identities = 401/488 (82%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 568 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 509
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 508 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 449
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|||||||||||||| || || || ||||| || | || || ||||| || || || |||
Sbjct: 448 gcttggttcacctgaatatgcgacacatacagcgtatcgacatccaatcccttaacttca 389
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||||
Sbjct: 388 gcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaa 329
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 328 cgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgccacag 269
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 268 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagcc 209
Query: 719 ttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtggacc 778
||| |||| ||||||| | | |||||||| ||||| | ||||||||| ||||| ||
Sbjct: 208 ttgctcaactgcagcttcctgatggcaaaagcggtctcacgtgtgttcttaaagtgcaca 149
Query: 779 ctcaggtcccttcccatggccttggccgatttggtagggttgcccggctcctgcgagtac 838
| |||||||| ||||| ||||| || |||||||| || ||| ||| ||| |||||||
Sbjct: 148 cgcaggtcccgacccatagccttagcggatttggtgggattggacggttccctcgagtac 89
Query: 839 ttaaccat 846
|| |||||
Sbjct: 88 ttcaccat 81
>gb|CD224999.1|CD224999 CCC1_37_E01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_E01_A007 5', mRNA sequence
Length = 682
Score = 278 bits (140), Expect = 9e-073
Identities = 401/488 (82%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 568 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 509
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 508 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 449
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|||||||||||||| || || || ||||| || | || || ||||| || || || |||
Sbjct: 448 gcttggttcacctgaatatgcgacacatacagcgtatcgacatccaatcccttaacttca 389
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||||
Sbjct: 388 gcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaa 329
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 328 cgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgccacag 269
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 268 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagcc 209
Query: 719 ttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtggacc 778
||| |||| ||||||| | | |||||||| ||||| | ||||||||| ||||| ||
Sbjct: 208 ttgctcaactgcagcttcctgatggcaaaagcggtctcacgtgtgttcttaaagtgcaca 149
Query: 779 ctcaggtcccttcccatggccttggccgatttggtagggttgcccggctcctgcgagtac 838
| |||||||| ||||| ||||| || |||||||| || ||| ||| ||| |||||||
Sbjct: 148 cgcaggtcccgacccatagccttagcggatttggtgggattggacggttccctcgagtac 89
Query: 839 ttaaccat 846
|| |||||
Sbjct: 88 ttcaccat 81
>gb|BG933623.1|BG933623 OV1_32_F03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 721
Score = 276 bits (139), Expect = 3e-072
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 463 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 404
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 403 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 344
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|||||||||||||| || || || ||||| || | || || ||||| || || || |||
Sbjct: 343 gcttggttcacctgaatatgcgacacatacagcgtatcgacatccaatcccttaacttca 284
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||||
Sbjct: 283 gcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaa 224
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 223 cgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgccacag 164
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 163 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagcc 104
Query: 719 ttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtggacc 778
||| |||| ||||||| | | |||||||| ||||| | ||||||||| ||||| ||
Sbjct: 103 ttgctcaactgcagcttcctgatggcaaaagcggtctcacgtgtgttcttaaagtgcaca 44
Query: 779 ctcaggtcccttcccatggccttggccgatttggt 813
| |||||||| ||||| ||||| || ||||||||
Sbjct: 43 cgcaggtcccgacccatagccttagcggatttggt 9
>gb|CD229863.1|CD229863 CCC1_20_F03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_20_F03_A007 5', mRNA sequence
Length = 545
Score = 276 bits (139), Expect = 3e-072
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 366 ctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggggaggaca 425
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 545 ctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggggaagaca 486
Query: 426 tgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgggcttggt 485
|||||||||| ||||| || ||||||||||| || ||||||| ||||||||| |||||||
Sbjct: 485 tgtaagggttgatgcgcccatgagcacggtatgtccggcgccgctgcttctgagcttggt 426
Query: 486 tcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatcagcgttac 545
||||||| || ||||| |||||||| | || || |||||||| || || ||||| || |
Sbjct: 425 tcacctgaatatgtgacacatagagcgtatcgacatccaagcccttaacttcagcattgc 366
Query: 546 tctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccagcgaccct 605
|||| |||||||| || | |||||| ||||| | || ||||| ||||||| || ||||
Sbjct: 365 tctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaacgtccct 306
Query: 606 gcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacagtatctcc 665
| ||||| |||||||||||||| ||||| || || || |||||||| |||||||| || |
Sbjct: 305 gaccattcgagtggcgagacttagcttgcgctgtacgtccaacaccaccacagtacctac 246
Query: 666 ggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagccttggtca 725
|||||||||| || |||||||| ||||| ||||||||||| || | ||||||||| | |
Sbjct: 245 ggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagccttgctaa 186
Query: 726 aaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtggaccctcaggt 785
||||||| | | |||||||||||||| | ||||||||| ||||| || | |||||
Sbjct: 185 gccgcagcttcctgatggcaaaagctgtctcacgtgtgttcttaaagtgcacacgcaggt 126
Query: 786 cccttcccatggccttggccgatttggtagggttg 820
||| ||||| || || || |||||||| ||||||
Sbjct: 125 cccgacccatagctttagcggatttggtggggttg 91
>gb|CF072304.1|CF072304 FE1_7_H02.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_7_H02_A002 3', mRNA sequence
Length = 601
Score = 276 bits (139), Expect = 3e-072
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 467 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 408
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 407 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 348
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|||||||||||||| || || || ||||| || | || || ||||| || || || |||
Sbjct: 347 gcttggttcacctgaatatgcgacacatacagcgtatcgacatccaatcccttaacttca 288
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||||
Sbjct: 287 gcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaa 228
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 227 cgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgccacag 168
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 167 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagcc 108
Query: 719 ttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtggacc 778
||| |||| ||||||| | | |||||||| ||||| | ||||||||| ||||| ||
Sbjct: 107 ttgctcaactgcagcttcctgatggcaaaagcggtctcacgtgtgttcttaaagtgcaca 48
Query: 779 ctcaggtcccttcccatggccttggccgatttggt 813
| |||||||| ||||| ||||| || ||||||||
Sbjct: 47 cgcaggtcccgacccatagccttagcggatttggt 13
>gb|BF586894.1|BF586894 FM1_31_G06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 501
Score = 266 bits (134), Expect = 3e-069
Identities = 296/350 (84%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 384 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatgtggcacggg 325
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||
Sbjct: 324 gaggacatgtaagggttgatgcgtccatgagcacggtaggtcctgcgcctctgcttctga 265
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|| |||||||| || ||||| || ||||||||| | ||||| || | ||||| || |||
Sbjct: 264 gcctggttcacttgaatgtgcgacacatagagggtatccacatcaagaccttttacctca 205
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||| ||||| | || ||||| |||||||||
Sbjct: 204 gcattgctctctgcattcttgagaaggtccagaatgaatttagcagacttgacaggccag 145
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||||||||| |||||||||||||| || || || || || |||||||| |||||
Sbjct: 144 cgtccctgcccatttgagtggcgagacttagcctgagcagttcgcccaacaccaccacaa 85
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggta 708
|| || ||||| || || ||||||||||| ||||| ||||||||||||||
Sbjct: 84 tacctgcggaacgggatggcctgcttgtgggcaatcacatcctcaaggta 35
>gb|BF480930.1|BF480930 FM1_15_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 547
Score = 264 bits (133), Expect = 1e-068
Identities = 316/377 (83%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
|||||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 418 tcagcctctttcttaactggctcttccttctctgaaagcatcagctcaatgtggcatggg 359
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 358 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 299
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
||||||||||||||||| || || ||||| || | || || ||||| || || || |||
Sbjct: 298 gcttggttcacctggatatgcgacacatacagcgtatcgacatccaatcccttaacttca 239
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||||
Sbjct: 238 gcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaa 179
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 178 cgtccctgaccattcgagtggcgagacttagcttgtgctgtacgtccaacaccgccacag 119
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 118 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagatacctgttagcc 59
Query: 719 ttggtcaaaggcagctt 735
||| |||| |||||||
Sbjct: 58 ttgctcaactgcagctt 42
>gb|BG240683.1|BG240683 OV1_37_A01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 256 bits (129), Expect = 3e-066
Identities = 315/377 (83%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 385 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 326
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 325 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 266
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|||||||||||||| || || || ||||| || | || || ||||| || || || |||
Sbjct: 265 gcttggttcacctgaatatgcgacacatacagcgtatcgacatccaatcccttaacttca 206
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||||
Sbjct: 205 gcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaa 146
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 145 cgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgccacag 86
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 85 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagcc 26
Query: 719 ttggtcaaaggcagctt 735
||| |||| |||||||
Sbjct: 25 ttgctcaactgcagctt 9
>gb|CF758573.1|CF758573 DSAF1_33_G09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_33_G09_A011 3', mRNA sequence
Length = 550
Score = 256 bits (129), Expect = 3e-066
Identities = 315/377 (83%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 389 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 330
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 329 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 270
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|||||||||||||| || || || ||||| || | || || ||||| || || || |||
Sbjct: 269 gcttggttcacctgaatatgcgacacatacagcgtatcgacatccaatcccttaacttca 210
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||||
Sbjct: 209 gcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggccaa 150
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct: 149 cgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgccacag 90
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 89 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagcc 30
Query: 719 ttggtcaaaggcagctt 735
||| |||| |||||||
Sbjct: 29 ttgctcaactgcagctt 13
>gb|CD220344.1|CD220344 CCC1_66_A12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_66_A12_A007 5', mRNA sequence
Length = 555
Score = 252 bits (127), Expect = 5e-065
Identities = 388/475 (81%)
Strand = Plus / Minus
Query: 372 tcacaggctcttccttctctgacagaatcagctcaatgtggcaaggggaggacatgtaag 431
|||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct: 555 tcactggctcttccttctctgaaagcatcagctcaatgtggcatggggaagacatgtaag 496
Query: 432 ggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgggcttggttcacct 491
|||| ||||| || ||||||||||| || ||||||| ||||||||| |||||||||||||
Sbjct: 495 ggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctgagcttggttcacct 436
Query: 492 ggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatcagcgttactctcag 551
| || || || ||||| || | || || ||||| || || || ||||| || ||||| |
Sbjct: 435 gaatatgcgacacatacagcgtatcgacatccaatcccttaacttcagcattgctctctg 376
Query: 552 cattcttcagcaaatccaatatgaacctggctgacttaacaggccagcgaccctgcccat 611
||||||| || | |||||| ||||| | || ||||| ||||||| || ||||| ||||
Sbjct: 375 cattcttgagaagatccaaaatgaatttagcagacttggcaggccaacgtccctgaccat 316
Query: 612 tggagtggcgagactttgcttgtgcggtgcgaccaacacctccacagtatctccggaagg 671
| |||||||| ||||| |||||||| || || |||||||| |||||||| || |||||||
Sbjct: 315 tcgagtggcgggacttagcttgtgctgtacgtccaacaccgccacagtaccttcggaagg 256
Query: 672 gaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagccttggtcaaaggca 731
|||| || |||||||| ||||| ||||||||||| || | ||||||||| |||| |||
Sbjct: 255 gaatggcttgcttgtgggcaatcacatcctcaagataccttttagccttgctcaactgca 196
Query: 732 gcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtggaccctcaggtcccttc 791
|||| | | |||||||| ||||| | ||||||||| ||||| || | |||||||| |
Sbjct: 195 gcttcctgatggcaaaagcggtctcacgtgtgttcttaaagtgcacacgcaggtcccgac 136
Query: 792 ccatggccttggccgatttggtagggttgcccggctcctgcgagtacttaaccat 846
|||| ||||| || |||||||| || ||| ||| ||| ||||||||| |||||
Sbjct: 135 ccatagccttagcggatttggtgggattggacggttccctcgagtacttcaccat 81
>gb|BG102456.1|BG102456 RHIZ2_33_B10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 519
Score = 248 bits (125), Expect = 8e-064
Identities = 314/377 (83%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
|||||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 423 tcagcctctttcttaactggctcttccttctctgaaagcatcagctcaatgtggcatggg 364
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|| |||||||||||||| ||||| || ||||||||||| || ||||||| |||||||||
Sbjct: 363 gaagacatgtaagggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctga 304
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
||||||||||||||||| || || ||||| || | || || ||||| || || || |||
Sbjct: 303 gcttggttcacctggatatgcgacacatacagcgtatcgacatccaatcccttaacttca 244
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| | | |||||| ||||| | || ||||| |||||||
Sbjct: 243 gcattgctctctgcattcttgacaagatccaaaatgaatttagcagacttggcaggccaa 184
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||| ||||| |||||||||||||| ||||||| || || |||||||| ||||||
Sbjct: 183 cgtccctgaccattcgagtggcgagacttatcttgtgctgtacgtccaacaccgccacag 124
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttagcc 718
|| || ||||||||||| || |||||||| ||||| ||||||||||| || | ||||||
Sbjct: 123 taccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagataccttttagcc 64
Query: 719 ttggtcaaaggcagctt 735
||| |||| |||||||
Sbjct: 63 ttgctcaactgcagctt 47
>gb|CF758075.1|CF758075 DSAF1_27_A01.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_27_A01_A011 3', mRNA sequence
Length = 595
Score = 232 bits (117), Expect = 5e-059
Identities = 285/341 (83%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 341 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatgtggcacggg 282
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
||||||||||||||||| |||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 281 gaggacatgtaagggttgatgcgtccatgagcgcggtaggtcctgcgcctctgcttctga 222
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|| |||||||| || ||||| || ||||||||| | ||||| || | ||||| || |||
Sbjct: 221 gcctggttcacttgaatgtgcgacacatagagggtatccacatcaagaccttttacctca 162
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | |||| ||||| | || ||||| |||||||||
Sbjct: 161 gcattgctctctgcattcttgagaaggtccagaatgaatttagcagacttgacaggccag 102
Query: 599 cgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctccacag 658
|| ||||||||||| |||||||||||||| || || || || || || ||||| |||||
Sbjct: 101 cgtccctgcccatttgagtggcgagacttagcctgagcagttcgccctacaccaccacaa 42
Query: 659 tatctccggaagggaattgcctgcttgtgagcaataacatc 699
|| || ||||| || || ||||||||||| ||||| |||||
Sbjct: 41 tacctgcggaacgggatggcctgcttgtgggcaatcacatc 1
>gb|CF760718.1|CF760718 DSAF1_65_B10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_65_B10_A011 5', mRNA sequence
Length = 499
Score = 226 bits (114), Expect = 3e-057
Identities = 363/446 (81%)
Strand = Plus / Minus
Query: 401 agctcaatgtggcaaggggaggacatgtaagggttaatgcgtccgtgagcacggtaggtg 460
||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 488 agctcgatgtggcacggggaggacatgtaagggttgatgcgtccatgagcgcggtaggtc 429
Query: 461 cggcgcctctgcttctgggcttggttcacctggatgtgtgaaacatagaggttgtccacg 520
| ||||||||||||||| || |||||||| || ||||| || ||||||||| | |||||
Sbjct: 428 ctgcgcctctgcttctgagcctggttcacttgaatgtgcgacacatagagggtatccaca 369
Query: 521 tccaagcctttcacatcagcgttactctcagcattcttcagcaaatccaatatgaacctg 580
|| | ||||| || ||||| || ||||| |||||||| || | |||| ||||| |
Sbjct: 368 tcaagaccttttacctcagcattgctctctgcattcttgagaaggtccagaatgaattta 309
Query: 581 gctgacttaacaggccagcgaccctgcccattggagtggcgagactttgcttgtgcggtg 640
|| ||||| ||||||||||| ||||||||||| |||||||||||||| || || || ||
Sbjct: 308 gcagacttgacaggccagcgtccctgcccatttgagtggcgagacttagcctgagcagtt 249
Query: 641 cgaccaacacctccacagtatctccggaagggaattgcctgcttgtgagcaataacatcc 700
|| || ||||| ||||| || || ||||| || || ||||||||||| ||||| ||||||
Sbjct: 248 cgccctacaccaccacaatacctgcggaacgggatggcctgcttgtgggcaatcacatcc 189
Query: 701 tcaaggtatcgcttagccttggtcaaaggcagcttgcgaagcgcaaaagctgtctccctt 760
|||||||| | || |||||||| | | |||||| | || |||||||||||||| |
Sbjct: 188 tcaaggtaccttttggccttggtgagtgacagcttcctgagggcaaaagctgtctcgcgg 129
Query: 761 gtgttcttgaagtggaccctcaggtcccttcccatggccttggccgatttggtagggttg 820
|||||||||||||| || | ||||| | |||||||||||||| || ||||| ||||||
Sbjct: 128 gtgttcttgaagtgaacacggaggtcacgacccatggccttggcggacttggtggggttg 69
Query: 821 cccggctcctgcgagtacttaaccat 846
||||||| ||||||||| |||||
Sbjct: 68 gtcggctccctcgagtacttcaccat 43
>gb|CF769505.1|CF769505 DSBF1_2_C09.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_C09_A010 5', mRNA sequence
Length = 497
Score = 226 bits (114), Expect = 3e-057
Identities = 363/446 (81%)
Strand = Plus / Minus
Query: 401 agctcaatgtggcaaggggaggacatgtaagggttaatgcgtccgtgagcacggtaggtg 460
||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 488 agctcgatgtggcacggggaggacatgtaagggttgatgcgtccatgagcgcggtaggtc 429
Query: 461 cggcgcctctgcttctgggcttggttcacctggatgtgtgaaacatagaggttgtccacg 520
| ||||||||||||||| || |||||||| || ||||| || ||||||||| | |||||
Sbjct: 428 ctgcgcctctgcttctgagcctggttcacttgaatgtgcgacacatagagggtatccaca 369
Query: 521 tccaagcctttcacatcagcgttactctcagcattcttcagcaaatccaatatgaacctg 580
|| | ||||| || ||||| || ||||| |||||||| || | |||| ||||| |
Sbjct: 368 tcaagaccttttacctcagcattgctctctgcattcttgagaaggtccagaatgaattta 309
Query: 581 gctgacttaacaggccagcgaccctgcccattggagtggcgagactttgcttgtgcggtg 640
|| ||||| ||||||||||| ||||||||||| |||||||||||||| || || || ||
Sbjct: 308 gcagacttgacaggccagcgtccctgcccatttgagtggcgagacttagcctgagcagtt 249
Query: 641 cgaccaacacctccacagtatctccggaagggaattgcctgcttgtgagcaataacatcc 700
|| || ||||| ||||| || || ||||| || || ||||||||||| ||||| ||||||
Sbjct: 248 cgccctacaccaccacaatacctgcggaacgggatggcctgcttgtgggcaatcacatcc 189
Query: 701 tcaaggtatcgcttagccttggtcaaaggcagcttgcgaagcgcaaaagctgtctccctt 760
|||||||| | || |||||||| | | |||||| | || |||||||||||||| |
Sbjct: 188 tcaaggtaccttttggccttggtgagtgacagcttcctgagggcaaaagctgtctcgcgg 129
Query: 761 gtgttcttgaagtggaccctcaggtcccttcccatggccttggccgatttggtagggttg 820
|||||||||||||| || | ||||| | |||||||||||||| || ||||| ||||||
Sbjct: 128 gtgttcttgaagtgaacacggaggtcacgacccatggccttggcggacttggtggggttg 69
Query: 821 cccggctcctgcgagtacttaaccat 846
||||||| ||||||||| |||||
Sbjct: 68 gtcggctccctcgagtacttcaccat 43
>gb|AI724124.1|AI724124 RHIZ1_7_A05.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 507
Score = 192 bits (97), Expect = 4e-047
Identities = 226/269 (84%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 316 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatgtggcacggg 257
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
||||||||||||||||| |||||||| ||||| |||||||| | |||||| ||||| ||
Sbjct: 256 gaggacatgtaagggttgatgcgtccatgagcgcggtaggtcctgcgcctttgcttttga 197
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|| |||||||| || ||||| || ||||||||| | ||||| || | ||||| || |||
Sbjct: 196 gcctggttcacttgaatgtgcgacacatagagggtatccacatcaagaccttttacctca 137
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggccag 598
|| || ||||| |||||||| || | ||| ||||| | || ||||| |||||||||
Sbjct: 136 gcattgctctctgcattcttgagaagggccagaatgaatttagcagacttgacaggccag 77
Query: 599 cgaccctgcccattggagtggcgagactt 627
|| ||||||||||| ||||||||||||||
Sbjct: 76 cgtccctgcccatttgagtggcgagactt 48
>gb|AW564321.1|AW564321 LG1_290_F10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 182 bits (92), Expect = 4e-044
Identities = 173/200 (86%)
Strand = Plus / Plus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 263 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatgtggcacggg 322
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
||||||||||||||||| |||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 323 gaggacatgtaagggttgatgcgtccatgagcgcggtaggtcctgcgcctctgcttctga 382
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|| |||||||| || ||||| || ||||||||| | ||||| || | ||||| || |||
Sbjct: 383 gcctggttcacttgaatgtgcgacacatagagggtatccacatcaagaccttttacctca 442
Query: 539 gcgttactctcagcattctt 558
|| || ||||| ||||||||
Sbjct: 443 gcattgctctctgcattctt 462
>gb|AW925034.1|AW925034 WS1_74_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 401
Score = 182 bits (92), Expect = 4e-044
Identities = 173/200 (86%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 201 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatgtggcacggg 142
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
||||||||||||||||| |||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 141 gaggacatgtaagggttgatgcgtccatgagcgcggtaggtcctgcgcctctgcttctga 82
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|| |||||||| || ||||| || ||||||||| | ||||| || | ||||| || |||
Sbjct: 81 gcctggttcacttgaatgtgcgacacatagagggtatccacatcaagaccttttacctca 22
Query: 539 gcgttactctcagcattctt 558
|| || ||||| ||||||||
Sbjct: 21 gcattgctctctgcattctt 2
>gb|CF771828.1|CF771828 DSBF1_24_F01.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_24_F01_A010 3', mRNA sequence
Length = 459
Score = 182 bits (92), Expect = 4e-044
Identities = 173/200 (86%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 204 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatgtggcacggg 145
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
||||||||||||||||| |||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 144 gaggacatgtaagggttgatgcgtccatgagcgcggtaggtcctgcgcctctgcttctga 85
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|| |||||||| || ||||| || ||||||||| | ||||| || | ||||| || |||
Sbjct: 84 gcctggttcacttgaatgtgcgacacatagagggtatccacatcaagaccttttacctca 25
Query: 539 gcgttactctcagcattctt 558
|| || ||||| ||||||||
Sbjct: 24 gcattgctctctgcattctt 5
>gb|CL180046.1|CL180046 104_389_10895726_148_31907_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895726, DNA
sequence
Length = 765
Score = 172 bits (87), Expect = 4e-041
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 657 agtatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgcttag 716
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 agtatctccggaagggaattgcctgcttgtgagacataacatcctcaaggtatcgcttag 500
Query: 717 ccttggtcaaaggcagcttgcgaagcgcaaaagct 751
|||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttggtcaaaggcagcttgcgaagcgcaaaagct 535
Score = 155 bits (78), Expect = 9e-036
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 437 atgcgtccgtgagcacggtaggtgcggcgcctctgcttctgggcttggttcacctggatg 496
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 173 atgcgtccgtgagcacagtaggtgcagcgcctctgcttctgggcttggttcacttggatg 232
Query: 497 tgtgaaacatagaggttgtccacgtccaagcctttcac 534
||||||||||||||||||||||| ||||| ||||||||
Sbjct: 233 tgtgaaacatagaggttgtccacatccaaacctttcac 270
Score = 121 bits (61), Expect = 1e-025
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 363 cctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggggagg 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 26 cctctttcttcacaggctcttccttctctgacaggatcagctcaatgtggcaaggtgagg 85
Query: 423 acatgtaag 431
|||||||||
Sbjct: 86 acatgtaag 94
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 557 ttcagcaaatccaatatgaacctggctgacttaacaggccagcgaccctgcccattggag 616
||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct: 353 ttcagcaaatcgaatatgaacctggctgatttaacaggccagtgaccctgtccattggaa 412
Query: 617 tggcgagactttgctt 632
||||||||||||||||
Sbjct: 413 tggcgagactttgctt 428
>gb|BF586975.1|BF586975 FM1_31_G06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 405
Score = 141 bits (71), Expect = 1e-031
Identities = 215/263 (81%)
Strand = Plus / Minus
Query: 584 gacttaacaggccagcgaccctgcccattggagtggcgagactttgcttgtgcggtgcga 643
||||| ||||||||||| ||||||||||| |||||||||||||| || || || || ||
Sbjct: 306 gacttgacaggccagcgtccctgcccatttgagtggcgagacttagcctgagcagttcgc 247
Query: 644 ccaacacctccacagtatctccggaagggaattgcctgcttgtgagcaataacatcctca 703
|||||||| ||||| || || ||||| || || ||||||||||| ||||| |||||||||
Sbjct: 246 ccaacaccaccacaatacctgcggaacgggatggcctgcttgtgggcaatcacatcctca 187
Query: 704 aggtatcgcttagccttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtg 763
||||| | || |||||||| | | |||||| | || |||||||||||||| | |||
Sbjct: 186 aggtaccttttggccttggtgagtgacagcttcctgagggcaaaagctgtctcgcgggtg 127
Query: 764 ttcttgaagtggaccctcaggtcccttcccatggccttggccgatttggtagggttgccc 823
||||||||||| || | ||||| | ||||| |||||||| |||||||| |||||| |
Sbjct: 126 ttcttgaagtgaacacggaggtcacgacccatagccttggcggatttggtggggttggtc 67
Query: 824 ggctcctgcgagtacttaaccat 846
|||||| ||||||||| |||||
Sbjct: 66 ggctccctcgagtacttcaccat 44
>gb|BG240655.1|BG240655 OV1_32_F03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 431
Score = 139 bits (70), Expect = 5e-031
Identities = 298/374 (79%)
Strand = Plus / Minus
Query: 473 ttctgggcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttc 532
||||| |||||||||||||| || || || ||||| || | || || ||||| || ||
Sbjct: 431 ttctgagcttggttcacctgaatatgcgacacatacagcgtatcgacatccaatccctta 372
Query: 533 acatcagcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaaca 592
|| ||||| || ||||| |||||||| || | |||||| ||||| | || ||||| ||
Sbjct: 371 acttcagcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggca 312
Query: 593 ggccagcgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacct 652
||||| || ||||| ||||| |||||||| ||||| |||||||| || || ||||||||
Sbjct: 311 ggccaacgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccg 252
Query: 653 ccacagtatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgc 712
|||||||| || ||||||||||| || |||||||| ||||| ||||||||||| || |
Sbjct: 251 ccacagtaccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagatacctt 192
Query: 713 ttagccttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaag 772
||||||||| |||| ||||||| | | |||||||| ||||| | ||||||||| |||
Sbjct: 191 ttagccttgctcaactgcagcttcctgatggcaaaagcggtctcacgtgtgttcttaaag 132
Query: 773 tggaccctcaggtcccttcccatggccttggccgatttggtagggttgcccggctcctgc 832
|| || | |||||||| ||||| ||||| || |||||||| || ||| ||| ||| |
Sbjct: 131 tgcacacgcaggtcccgacccatagccttagcggatttggtgggattggacggttccctc 72
Query: 833 gagtacttaaccat 846
|||||||| |||||
Sbjct: 71 gagtacttcaccat 58
>gb|BF481004.1|BF481004 FM1_15_B07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 429
Score = 133 bits (67), Expect = 3e-029
Identities = 184/223 (82%)
Strand = Plus / Minus
Query: 591 caggccagcgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacac 650
||||||| || ||||| ||||| |||||||||||||| |||||||| || || |||||||
Sbjct: 328 caggccaacgtccctgaccattcgagtggcgagacttagcttgtgctgtacgtccaacac 269
Query: 651 ctccacagtatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatc 710
| |||||||| || ||||||||||| || |||||||| ||||| ||||||||||| || |
Sbjct: 268 cgccacagtaccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagatacc 209
Query: 711 gcttagccttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttga 770
||||||||| |||| ||||||| | | |||||||| ||||| | ||||||||| |
Sbjct: 208 ttttagccttgctcaactgcagcttcctgatggcaaaagcggtctcacgtgtgttcttaa 149
Query: 771 agtggaccctcaggtcccttcccatggccttggccgatttggt 813
|||| || | |||||||| ||||| ||||| || ||||||||
Sbjct: 148 agtgcacacgcaggtcccgacccatagccttagcggatttggt 106
>gb|BG240997.1|BG240997 OV1_37_A01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 417
Score = 133 bits (67), Expect = 3e-029
Identities = 250/311 (80%)
Strand = Plus / Minus
Query: 536 tcagcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggc 595
||||| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||
Sbjct: 376 tcagcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggc 317
Query: 596 cagcgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctcca 655
|| || ||||| ||||| |||||||| ||||| |||||||| || || |||||||| |||
Sbjct: 316 caacgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgcca 257
Query: 656 cagtatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgctta 715
||||| || ||||||||||| || |||||||| ||||| ||||||||||| || | |||
Sbjct: 256 cagtaccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagatacctttta 197
Query: 716 gccttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtgg 775
|||||| |||| ||||||| | | |||||||| ||||| | ||||||||| |||||
Sbjct: 196 gccttgctcaactgcagcttcctgatggcaaaagcggtctcacgtgtgttcttaaagtgc 137
Query: 776 accctcaggtcccttcccatggccttggccgatttggtagggttgcccggctcctgcgag 835
|| | |||||||| ||||| ||||| || |||||||| || ||| ||| ||| ||||
Sbjct: 136 acacgcaggtcccgacccatagccttagcggatttggtgggattggacggttccctcgag 77
Query: 836 tacttaaccat 846
||||| |||||
Sbjct: 76 tacttcaccat 66
>gb|AI724945.1|AI724945 RHIZ1_31_G09.y3_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 407
Score = 131 bits (66), Expect = 1e-028
Identities = 90/98 (91%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 101 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 42
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggta 456
|| |||||||||||||| ||||| || |||||||||||
Sbjct: 41 gaagacatgtaagggttgatgcgcccatgagcacggta 4
>gb|AW679285.1|AW679285 WS1_23_E05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 123 bits (62), Expect = 3e-026
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 204 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggg 145
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcac 452
|| |||||||||||||| ||||| || |||||||
Sbjct: 144 gaagacatgtaagggttgatgcgcccatgagcac 111
Score = 44.1 bits (22), Expect = 0.023
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 479 gcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcacatca 538
|||||||||||||| || || || |||||||| | || || |||||||| || || |||
Sbjct: 109 gcttggttcacctgaatatgcgacacatagagcgtatcgacatccaagcccttaacttca 50
Query: 539 gcgttactctcagcattcttcagcaaatccaatatgaa 576
|| || ||||| |||||||| || | |||||| |||||
Sbjct: 49 gcattgctctctgcattcttgagaagatccaaaatgaa 12
>gb|CF769590.1|CF769590 DSBF1_2_C09.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_C09_A010 3', mRNA sequence
Length = 339
Score = 121 bits (61), Expect = 1e-025
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct: 85 tcagcctctttcttcacaggctcttccttctctgacaagatgagctccatgtggcacggg 26
Query: 419 gaggacatgtaagggttaatgcgtc 443
||||||||||||||||| |||||||
Sbjct: 25 gaggacatgtaagggttgatgcgtc 1
>gb|BZ347286.1|BZ347286 ic82e06.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic82e06 5', DNA sequence
Length = 663
Score = 111 bits (56), Expect = 1e-022
Identities = 164/200 (82%)
Strand = Plus / Plus
Query: 536 tcagcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacaggc 595
||||| || ||||| |||||||| || | |||||| ||||| | || ||||| |||||
Sbjct: 66 tcagcattgctctctgcattcttgagaagatccaaaatgaatttagcagacttggcaggc 125
Query: 596 cagcgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctcca 655
|| || ||||| ||||| |||||||| ||||| |||||||| || || |||||||| |||
Sbjct: 126 caacgtccctgaccattcgagtggcgggacttagcttgtgctgtacgtccaacaccgcca 185
Query: 656 cagtatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgctta 715
||||| || ||||||||||| || |||||||| ||||| ||||||||||| || | |||
Sbjct: 186 cagtaccttcggaagggaatggcttgcttgtgggcaatcacatcctcaagatacctttta 245
Query: 716 gccttggtcaaaggcagctt 735
|||||| |||| |||||||
Sbjct: 246 gccttgctcaactgcagctt 265
>gb|AW747641.1|AW747641 WS1_74_E12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 228
Score = 103 bits (52), Expect = 3e-020
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||||||||||||||||||||||| || ||||| ||| |||| |||
Sbjct: 76 tcagcctctttcttcacaggctcttccttctctgacaagatgagctcgatggggcacggg 17
Query: 419 gaggacatgtaagggt 434
||||||||||||||||
Sbjct: 16 gaggacatgtaagggt 1
>gb|CW171576.1|CW171576 104_582_11155817_116_36529_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155817, DNA
sequence
Length = 675
Score = 97.6 bits (49), Expect = 2e-018
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 363 cctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggggagg 422
||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct: 418 cctctttcttcactggctcttccttctctgaaagcatcagctcaatgtggcatggggaag 359
Query: 423 acatgtaag 431
|||||||||
Sbjct: 358 acatgtaag 350
Score = 65.9 bits (33), Expect = 6e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 432 ggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgggcttggttcacct 491
|||| ||||| || ||||||||||| || ||||||| ||||||||| |||||||||||||
Sbjct: 260 ggttgatgcgcccatgagcacggtaagtccggcgccgctgcttctgagcttggttcacct 201
Query: 492 g 492
|
Sbjct: 200 g 200
>gb|AW679212.1|AW679212 WS1_23_E05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 264
Score = 79.8 bits (40), Expect = 4e-013
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 653 ccacagtatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgc 712
|||||||| || ||||||||||| || |||||||| ||||| ||||||||||| || |
Sbjct: 262 ccacagtacctacggaagggaatggcttgcttgtgggcaatcacatcctcaagatacctt 203
Query: 713 ttagccttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaag 772
||||||||| | | ||||||| | | |||||||||||||| | ||||||||| |||
Sbjct: 202 ttagccttgctaagctgcagcttcctgatggcaaaagctgtctcacgtgtgttcttaaag 143
Query: 773 tggaccctcaggtcccttcccatggccttggccgatttggtagggttg 820
|| || | |||||||| ||||| ||||| || |||||||| ||||||
Sbjct: 142 tgcacacgcaggtcccgacccatagccttagcggatttggtggggttg 95
>gb|CD224891.1|CD224891 CCC1_37_E01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_E01_A007 3', mRNA sequence
Length = 193
Score = 77.8 bits (39), Expect = 2e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatg 409
||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 51 tcagcctctttcttcactggctcttccttctctgaaagcatcagctcaatg 1
>gb|CW134454.1|CW134454 104_518_11117315_116_34822_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117315, DNA
sequence
Length = 682
Score = 65.9 bits (33), Expect = 6e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 766 cttgaagtggaccctcaggtcccttcccatggccttggccg 806
|||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 325 cttgaagtggaccctcagatccctgcccatggccttggccg 285
>gb|CW134455.1|CW134455 104_518_11117315_148_34818_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117315, DNA
sequence
Length = 700
Score = 65.9 bits (33), Expect = 6e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 766 cttgaagtggaccctcaggtcccttcccatggccttggccg 806
|||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 477 cttgaagtggaccctcagatccctgcccatggccttggccg 517
>gb|CW345906.1|CW345906 104_849_11488746_116_36220_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488746, DNA
sequence
Length = 666
Score = 65.9 bits (33), Expect = 6e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 766 cttgaagtggaccctcaggtcccttcccatggccttggccg 806
|||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 608 cttgaagtggaccctcagatccctgcccatggccttggccg 568
>gb|CW345907.1|CW345907 104_849_11488746_148_36219_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488746, DNA
sequence
Length = 695
Score = 65.9 bits (33), Expect = 6e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 766 cttgaagtggaccctcaggtcccttcccatggccttggccg 806
|||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 107 cttgaagtggaccctcagatccctgcccatggccttggccg 147
>gb|CW468803.1|CW468803 fsbb001f221d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221d07, DNA
sequence
Length = 620
Score = 56.0 bits (28), Expect = 6e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 95 tgacattgtaacttctgttctcaactttcattgtcgaaat 134
||||| |||||||| |||||||||||| ||||||||||||
Sbjct: 213 tgacactgtaacttttgttctcaacttccattgtcgaaat 174
>gb|BF586976.1|BF586976 FM1_31_G07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 122
Score = 54.0 bits (27), Expect = 2e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 743 gcaaaagctgtctcccttgtgttcttgaagtggaccctcaggtcccttcccatggccttg 802
|||||||||||||| | |||||||||||||| || | ||||| | ||||| ||||||
Sbjct: 99 gcaaaagctgtctcgcgggtgttcttgaagtgaacacggaggtcacgacccatagccttg 40
Query: 803 gccgatttggtagggttgcccggctcc 829
|| |||||||| |||||| |||||||
Sbjct: 39 gcggatttggtggggttggtcggctcc 13
>gb|BF586986.1|BF586986 FM1_31_H06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 108
Score = 54.0 bits (27), Expect = 2e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 743 gcaaaagctgtctcccttgtgttcttgaagtggaccctcaggtcccttcccatggccttg 802
|||||||||||||| | |||||||||||||| || | ||||| | ||||| ||||||
Sbjct: 94 gcaaaagctgtctctcgggtgttcttgaagtgaacacggaggtcacgacccatagccttg 35
Query: 803 gccgatttggtagggttgcccggctcc 829
|| |||||||| |||||| |||||||
Sbjct: 34 gcggatttggtggggttggtcggctcc 8
>gb|CW280857.1|CW280857 104_756_11407856_116_35452_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407856, DNA
sequence
Length = 561
Score = 52.0 bits (26), Expect = 9e-005
Identities = 46/52 (88%), Gaps = 3/52 (5%)
Strand = Plus / Plus
Query: 484 gttcacctggatgtgtgaaa---catagaggttgtccacgtccaagcctttc 532
|||| ||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct: 59 gttcgcctggatgtgtgaaaaaacatagagattgtccacatccaagcctttc 110
>gb|CW434444.1|CW434444 fsbb001f150c08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150c08, DNA
sequence
Length = 720
Score = 52.0 bits (26), Expect = 9e-005
Identities = 46/52 (88%), Gaps = 3/52 (5%)
Strand = Plus / Plus
Query: 484 gttcacctggatgtgtgaaa---catagaggttgtccacgtccaagcctttc 532
|||| ||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct: 141 gttcgcctggatgtgtgaaaaaacatagagattgtccacatccaagcctttc 192
>gb|CW434878.1|CW434878 fsbb001f150m14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150m14, DNA
sequence
Length = 642
Score = 52.0 bits (26), Expect = 9e-005
Identities = 46/52 (88%), Gaps = 3/52 (5%)
Strand = Plus / Plus
Query: 484 gttcacctggatgtgtgaaa---catagaggttgtccacgtccaagcctttc 532
|||| ||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct: 141 gttcgcctggatgtgtgaaaaaacatagagattgtccacatccaagcctttc 192
>gb|CW243574.1|CW243574 104_704_11220122_116_37584_013 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11220122, DNA sequence
Length = 608
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 31 aattcacgagctgatttgtggcacggcgttagcatctaat 70
|||||| ||||||||||| |||| ||| ||||||||||||
Sbjct: 2 aattcatgagctgatttgcggcatggcattagcatctaat 41
>gb|CW468802.1|CW468802 fsbb001f221d07f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f221d07, DNA
sequence
Length = 645
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 31 aattcacgagctgatttgtggcacggcgttagcatctaat 70
|||||| ||||||||||| |||| ||| ||||||||||||
Sbjct: 21 aattcatgagctgatttgcggcatggcattagcatctaat 60
>gb|CW391602.1|CW391602 fsbb001f077n05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077n05, DNA
sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 364 ctctttcttcacaggctcttccttct 389
|||||||||||||| |||||||||||
Sbjct: 517 ctctttcttcacagactcttccttct 542
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 918 cgtacctgcccgggcggccgct 939
||||||||||||||||||||||
Sbjct: 99 cgtacctgcccgggcggccgct 120
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 42.1 bits (21), Expect = 0.091
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgct 31
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 42.1 bits (21), Expect = 0.091
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgct 85
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 42.1 bits (21), Expect = 0.091
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgct 22
>gb|AW922075.1|AW922075 LG1_225_E08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 244
Score = 40.1 bits (20), Expect = 0.36
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 677 gcctgcttgtgagcaataacatcctcaaggta 708
|||||| |||| ||||| ||||||||||||||
Sbjct: 230 gcctgcctgtgggcaatcacatcctcaaggta 199
Score = 40.1 bits (20), Expect = 0.36
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 743 gcaaaagctgtctcccttgtgttcttgaagtg 774
|||||||||||||| | ||||||||||||||
Sbjct: 164 gcaaaagctgtctcgcgggtgttcttgaagtg 133
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 206,971
Number of Sequences: 832831
Number of extensions: 206971
Number of successful extensions: 54930
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54833
Number of HSP's gapped (non-prelim): 72
length of query: 940
length of database: 491,359,669
effective HSP length: 20
effective length of query: 920
effective length of database: 474,703,049
effective search space: 436726805080
effective search space used: 436726805080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)