BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.472
(1282 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN135574.1|CN135574 OX1_37_E04.g1_A002 Oxidatively-stres... 1170 0.0
gb|CF487111.1|CF487111 POL1_41_G08.g1_A002 Pollen Sorghum b... 1100 0.0
gb|BE599547.1|BE599547 PI1_88_G11.b1_A002 Pathogen induced ... 898 0.0
gb|BM317812.1|BM317812 WS1_63_H02.b9_A002 Water-stressed 1 ... 856 0.0
gb|CN141270.1|CN141270 OX1_50_H11.b1_A002 Oxidatively-stres... 743 0.0
gb|AW565645.1|AW565645 LG1_347_F03.g1_A002 Light Grown 1 (L... 735 0.0
gb|CN135496.1|CN135496 OX1_37_E04.b1_A002 Oxidatively-stres... 729 0.0
gb|CD229550.1|CD229550 CCC1_16_B10.g1_A007 Callus culture/c... 712 0.0
gb|CN141346.1|CN141346 OX1_50_H11.g1_A002 Oxidatively-stres... 593 e-167
gb|CF488505.1|CF488505 POL1_50_A05.g1_A002 Pollen Sorghum b... 585 e-165
gb|CD210234.1|CD210234 HS1_57_C09.g1_A012 Heat-shocked seed... 577 e-163
gb|BE599382.1|BE599382 PI1_88_G11.g1_A002 Pathogen induced ... 573 e-161
gb|BE363486.1|BE363486 WS1_63_H02.g1_A002 Water-stressed 1 ... 549 e-154
gb|CD223072.1|CD223072 CCC1_25_B04.g1_A007 Callus culture/c... 543 e-152
gb|CD229470.1|CD229470 CCC1_16_B10.b1_A007 Callus culture/c... 543 e-152
gb|BE367378.1|BE367378 PI1_4_F08.g1_A002 Pathogen induced 1... 539 e-151
gb|CD222955.1|CD222955 CCC1_25_B04.b1_A007 Callus culture/c... 519 e-145
gb|BZ692853.1|BZ692853 SP__Ba0026O14.r SP__Ba Sorghum propi... 517 e-145
gb|CW786742.1|CW786742 SP__Ba0026O14.r SP__Ba Sorghum propi... 517 e-145
gb|CF481994.1|CF481994 POL1_76_A01.b1_A002 Pollen Sorghum b... 509 e-142
gb|CD210133.1|CD210133 HS1_57_C09.b1_A012 Heat-shocked seed... 502 e-140
gb|CB924926.1|CB924926 ABA1_29_C02.b1_A012 Abscisic acid-tr... 468 e-130
gb|BM326174.1|BM326174 PIC1_66_G05.b1_A002 Pathogen-infecte... 462 e-128
gb|BM331477.1|BM331477 PIC1_66_G05.g1_A002 Pathogen-infecte... 426 e-117
gb|CF487029.1|CF487029 POL1_41_G08.b1_A002 Pollen Sorghum b... 422 e-116
gb|AW678947.1|AW678947 WS1_21_F01.b1_A002 Water-stressed 1 ... 406 e-111
gb|AW678978.1|AW678978 WS1_21_F01.g1_A002 Water-stressed 1 ... 389 e-106
gb|BE592460.1|BE592460 WS1_89_B02.b1_A002 Water-stressed 1 ... 387 e-105
gb|BG049700.1|BG049700 EM1_7_H11.g1_A002 Embryo 1 (EM1) Sor... 331 9e-089
gb|BE592152.1|BE592152 WS1_89_B02.g1_A002 Water-stressed 1 ... 317 1e-084
gb|CF072259.1|CF072259 FE1_6_F04.b1_A002 Iron-deficient see... 291 8e-077
gb|AW671496.1|AW671496 LG1_347_F03.b1_A002 Light Grown 1 (L... 244 2e-062
gb|BZ694184.1|BZ694184 SP__Ba0043L19.f SP__Ba Sorghum propi... 202 6e-050
gb|CW788306.1|CW788306 SP__Ba0043L19.f SP__Ba Sorghum propi... 192 6e-047
gb|CL172678.1|CL172678 104_375_10890320_148_31796_224 Sorgh... 155 1e-035
gb|CF756712.1|CF756712 DSAF1_8_C06.g1_A011 Drought-stressed... 135 1e-029
gb|AI724308.1|AI724308 RHIZ1_34_B02.y1_A001 Rhizome1 (RHIZ1... 100 6e-019
gb|CW470815.1|CW470815 fsbb001f224d22k0 Sorghum methylation... 84 4e-014
gb|CW193320.1|CW193320 104_616_11179502_116_36780_061 Sorgh... 72 1e-010
gb|CW226752.1|CW226752 104_664_11205053_116_37219_017 Sorgh... 72 1e-010
gb|CW235737.1|CW235737 104_691_11215166_148_37492_059 Sorgh... 72 1e-010
gb|CW339369.1|CW339369 104_840_11485239_116_36142_064 Sorgh... 72 1e-010
gb|BG946922.1|BG946922 IP1_1_D05.b1_A002 Immature pannicle ... 70 6e-010
gb|CW235736.1|CW235736 104_691_11215166_116_37493_059 Sorgh... 68 2e-009
gb|BG158061.1|BG158061 EM1_7_H11.b1_A002 Embryo 1 (EM1) Sor... 62 1e-007
gb|CL172677.1|CL172677 104_375_10890320_116_31797_224 Sorgh... 54 3e-005
gb|BI351253.1|BI351253 IP1_69_A07.b1_A002 Immature pannicle... 48 0.002
gb|BI351259.1|BI351259 IP1_69_B02.b1_A002 Immature pannicle... 48 0.002
gb|BI351273.1|BI351273 IP1_69_D02.b1_A002 Immature pannicle... 48 0.002
gb|BI351276.1|BI351276 IP1_69_D07.b1_A002 Immature pannicle... 48 0.002
gb|BI351285.1|BI351285 IP1_69_E07.b1_A002 Immature pannicle... 48 0.002
gb|BI351304.1|BI351304 IP1_69_H08.b1_A002 Immature pannicle... 48 0.002
gb|CB928548.1|CB928548 ABA1_16_C02.g1_A012 Abscisic acid-tr... 48 0.002
gb|CW415829.1|CW415829 fsbb001f116b16k0 Sorghum methylation... 46 0.008
gb|BI351249.1|BI351249 IP1_69_A02.b1_A002 Immature pannicle... 46 0.008
gb|BI351250.1|BI351250 IP1_69_A03.b1_A002 Immature pannicle... 46 0.008
gb|BI351254.1|BI351254 IP1_69_A08.b1_A002 Immature pannicle... 46 0.008
gb|BI351258.1|BI351258 IP1_69_B01.b1_A002 Immature pannicle... 46 0.008
gb|BI351264.1|BI351264 IP1_69_C02.b1_A002 Immature pannicle... 46 0.008
gb|BI351265.1|BI351265 IP1_69_C03.b1_A002 Immature pannicle... 46 0.008
gb|BI351266.1|BI351266 IP1_69_C04.b1_A002 Immature pannicle... 46 0.008
gb|BI351269.1|BI351269 IP1_69_C08.b1_A002 Immature pannicle... 46 0.008
gb|BI351275.1|BI351275 IP1_69_D06.b1_A002 Immature pannicle... 46 0.008
gb|BI351282.1|BI351282 IP1_69_E02.b1_A002 Immature pannicle... 46 0.008
gb|BI351286.1|BI351286 IP1_69_E08.b1_A002 Immature pannicle... 46 0.008
gb|BI351290.1|BI351290 IP1_69_F01.b1_A002 Immature pannicle... 46 0.008
gb|BI351291.1|BI351291 IP1_69_F02.b1_A002 Immature pannicle... 46 0.008
gb|BI351293.1|BI351293 IP1_69_F06.b1_A002 Immature pannicle... 46 0.008
gb|BI351298.1|BI351298 IP1_69_G08.b1_A002 Immature pannicle... 46 0.008
gb|BI351300.1|BI351300 IP1_69_H01.b1_A002 Immature pannicle... 46 0.008
gb|BI351301.1|BI351301 IP1_69_H02.b1_A002 Immature pannicle... 46 0.008
gb|BI351302.1|BI351302 IP1_69_H05.b1_A002 Immature pannicle... 46 0.008
gb|CB928401.1|CB928401 ABA1_15_C02.g1_A012 Abscisic acid-tr... 46 0.008
gb|CB928577.1|CB928577 ABA1_16_C01.g1_A012 Abscisic acid-tr... 46 0.008
gb|CB928729.1|CB928729 ABA1_17_C01.g1_A012 Abscisic acid-tr... 46 0.008
gb|CB928861.1|CB928861 ABA1_24_C01.g1_A012 Abscisic acid-tr... 46 0.008
gb|AW679108.1|AW679108 WS1_22_G11.g1_A002 Water-stressed 1 ... 44 0.032
gb|BG465026.1|BG465026 EM1_35_C03.b1_A002 Embryo 1 (EM1) So... 42 0.13
gb|BI351303.1|BI351303 IP1_69_H06.b1_A002 Immature pannicle... 42 0.13
gb|CL195987.1|CL195987 104_421_10942761_114_32308_033 Sorgh... 40 0.49
gb|CL195988.1|CL195988 104_421_10942761_116_32312_033 Sorgh... 40 0.49
gb|CW122762.1|CW122762 104_501_11110845_148_34675_083 Sorgh... 40 0.49
gb|CW486976.1|CW486976 fsbb001f252i23f0 Sorghum methylation... 40 0.49
>gb|CN135574.1|CN135574 OX1_37_E04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_37_E04_A002 5', mRNA sequence
Length = 813
Score = 1170 bits (590), Expect = 0.0
Identities = 707/746 (94%)
Strand = Plus / Minus
Query: 504 atagagtcagcatggctccaaccaaccatctgcattcttctcctgatgacatcaagcggg 563
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 805 atagagtcagcatggttccaaccaaccatctgcattcttctcgtgatgacatcaagagga 746
Query: 564 tatgcaacagtctggccaatggttcccgccacagctccacacccaagccttgtaactacg 623
|||||||||||||||||||| || || |||||||| |||||||||||||||||||| ||
Sbjct: 745 tatgcaacagtctggccaatagtcccagccacagcaccacacccaagccttgtaaccaca 686
Query: 624 tgcagctcgttgtcatttgcaaggccaaatgaatttgtctggagtagccagtctttgagg 683
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 tgcagctcgttgtcatttgcaaggccaaatggatttgtctggagtagccagtctttgagg 626
Query: 684 gactcatatacagcgaagttgagaccaacatatggaacaactccgattacagatggaagc 743
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 gactcatatacagcaaagttgaggccaacatatggaacaactccgattacagatggaagc 566
Query: 744 caccctttgtatagagcacgaaagccttcttcacggtagactgtacccagtgcatgaaac 803
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caccctctgtataaagcacgaaagccttcttcacggtagactgtacccagtgcatgaaac 506
Query: 804 ataccacggtactggtagggagatttgtctgtctgaacagtgatccttcccctaaccata 863
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 505 ataccacggtactggtagggagacttgtctgtctgaacagtgatcctacccctaaccata 446
Query: 864 tccatcgggtaagtagcagacatagctatgataccagcacatgctccagctccaaggcgc 923
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 445 tccattgggtaagtagcagacatggctatgataccagcacacgctccagctccaaggcgc 386
Query: 924 aagagcggagtaagctgagcatcctcttcaccagtctgttgacggtaggcccacagaatt 983
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 385 aagagtggagtaagctgagcatcctcttccccagtctgttgacggtaagcccacagaatt 326
Query: 984 ccctttgacgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatccttgca 1043
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 ccctttgccgcctgctcgtagctaaaaaacttcacggcagaatttggaacgatccttgca 266
Query: 1044 caattggtaccattgcccttgaaaagtccacggaggccctctgttctccagatatacttg 1103
|||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 265 caattggtgccattgcccttgaaaggtccacggaggccctcagttctccagatatacttg 206
Query: 1104 agaccctgaacagtaccattgtacttgatgctgtgcggattttgaacctgaagcaatatt 1163
||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 205 agaccctgaactgtaccgttgtacttaatgctgtgtggattttgaacctgaagcaagatt 146
Query: 1164 ttcaatcgttcaagtggagcaacagcagtacgagacactccgcctgctacgccgccggcg 1223
||||||||||| |||||||||||||||||||| |||||||| || || ||||| ||||||
Sbjct: 145 ttcaatcgttcgagtggagcaacagcagtacgtgacactcctcccgcgacgccaccggcg 86
Query: 1224 acgagcgacttgcagatggtgaggat 1249
||||||||||||||||||||||||||
Sbjct: 85 acgagcgacttgcagatggtgaggat 60
>gb|CF487111.1|CF487111 POL1_41_G08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_41_G08_A002 5', mRNA sequence
Length = 711
Score = 1100 bits (555), Expect = 0.0
Identities = 651/683 (95%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 683 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 624
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 623 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 564
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 504
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 503 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 444
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 443 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 384
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttgcaaggccaaatgaatt 658
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 383 accacacccaagccttgtaaccacatgcagctcgttgtcatttgcaaggccaaatggatt 324
Query: 659 tgtctggagtagccagtctttgagggactcatatacagcgaagttgagaccaacatatgg 718
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 323 tgtctggagtagccagtctttgagggactcatatacagcaaagttgaggccaacatatgg 264
Query: 719 aacaactccgattacagatggaagccaccctttgtatagagcacgaaagccttcttcacg 778
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 263 aacaactccgattacagatggaagccaccctctgtataaagcacgaaagccttcttcacg 204
Query: 779 gtagactgtacccagtgcatgaaacataccacggtactggtagggagatttgtctgtctg 838
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 203 gtagactgtacccagtgcatgaaacataccacggtactggtagggagacttgtctgtctg 144
Query: 839 aacagtgatccttcccctaaccatatccatcgggtaagtagcagacatagctatgatacc 898
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 143 aacagtgatcctacccctaaccatatccattgggtaagtagcagacatggctatgatacc 84
Query: 899 agcacatgctccagctccaaggcgcaagagcggagtaagctgagcatcctcttcaccagt 958
|||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 83 agcacacgctccagctccaaggcgcaagagtggagtaagctgggcatcctcttccccagt 24
Query: 959 ctgttgacggtaggcccacagaa 981
|||||||||||| ||||||||||
Sbjct: 23 ctgttgacggtaagcccacagaa 1
>gb|BE599547.1|BE599547 PI1_88_G11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 561
Score = 898 bits (453), Expect = 0.0
Identities = 525/549 (95%)
Strand = Plus / Minus
Query: 591 gccacagctccacacccaagccttgtaactacgtgcagctcgttgtcatttgcaaggcca 650
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 556 gccacagcaccacacccaagccttgtaaccacatgcagctcgttgtcatttgcaaggcca 497
Query: 651 aatgaatttgtctggagtagccagtctttgagggactcatatacagcgaagttgagacca 710
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 496 aatggatttgtctggagtagccagtctttgagggactcatatacagcaaagttgaggcca 437
Query: 711 acatatggaacaactccgattacagatggaagccaccctttgtatagagcacgaaagcct 770
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 436 acatatggaacaactccgattacagatggaagccaccctctgtataaagcacgaaagcct 377
Query: 771 tcttcacggtagactgtacccagtgcatgaaacataccacggtactggtagggagatttg 830
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 376 tcttcacggtagactgtacccagtacatgaaacataccacggtactggtagggagacttg 317
Query: 831 tctgtctgaacagtgatccttcccctaaccatatccatcgggtaagtagcagacatagct 890
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 316 tctgtctgaacagtgatcctacccctaaccatatccattgggtaagtagcagacatggct 257
Query: 891 atgataccagcacatgctccagctccaaggcgcaagagcggagtaagctgagcatcctct 950
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 256 atgataccagcacacgctccagctccaaggcgcaagagtggagtaagctgagcatcctct 197
Query: 951 tcaccagtctgttgacggtaggcccacagaattccctttgacgcctgctcgtagctaaaa 1010
|| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 196 tccccagtctgttgacggtaagcccacagaattccctttgccgcctgctcgtagctaaaa 137
Query: 1011 aacttcacggcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagt 1070
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 136 aacttcacggcagaatttggaacgatccttgcacaattggtgccattgcccttgaaaagt 77
Query: 1071 ccacggaggccctctgttctccagatatacttgagaccctgaacagtaccattgtacttg 1130
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 76 ccacggaggccctcagttctccagatatacttgagaccctgaactgtaccgttgtactta 17
Query: 1131 atgctgtgc 1139
|||||||||
Sbjct: 16 atgctgtgc 8
>gb|BM317812.1|BM317812 WS1_63_H02.b9_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 856 bits (432), Expect = 0.0
Identities = 510/536 (95%)
Strand = Plus / Minus
Query: 325 ctagcacatccttcacaacctcgtaagtcacaaatgcaatggcaattgagggcaccacct 384
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 543 ctagcacatccttcacaacctggtaagtgacaaatgcaatggcaattgagggcaccacct 484
Query: 385 tgactgagttcggcacaagacccttgtagagagcaccaactccttcatgacgaacagtct 444
||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct: 483 tgactgaattcggaacaagacccttgtacagagcaccagcgccttcatgacgaacagtct 424
Query: 445 tcctgaatgcatcgatcatgccattgtactggagtgcttctttgccttgcccagtaacaa 504
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 423 tcctgaatgcatcgatcatgccattgtactggagtgcttctttgcctttcccagtaatga 364
Query: 505 tagagtcagcatggctccaaccaaccatctgcattcttctcctgatgacatcaagcgggt 564
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 363 tagagtcagcatggttccaaccaaccatctgcattcttctcctgatgacatcaagaggat 304
Query: 565 atgcaacagtctggccaatggttcccgccacagctccacacccaagccttgtaactacgt 624
||||||||||||||||||| || || |||||||| |||||||||||||||||||| || |
Sbjct: 303 atgcaacagtctggccaatagtcccagccacagcaccacacccaagccttgtaaccacat 244
Query: 625 gcagctcgttgtcatttgcaaggccaaatgaatttgtctggagtagccagtctttgaggg 684
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 243 gcagctcgttgtcatttgcaaggccaaatggatttgtctggagtagccagtctttgaggg 184
Query: 685 actcatatacagcgaagttgagaccaacatatggaacaactccgattacagatggaagcc 744
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 183 actcatatacagcaaagttgaggccaacatatggaacaactccgattacagatggaagcc 124
Query: 745 accctttgtatagagcacgaaagccttcttcacggtagactgtacccagtgcatgaaaca 804
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 accctctgtataaagcacgaaagccttcttcacggtagactgtacccagtgcatgaaaca 64
Query: 805 taccacggtactggtagggagatttgtctgtctgaacagtgatccttcccctaacc 860
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 63 taccacggtactggtagggagacttgtctgtctgaacagtgatcctacccctaacc 8
>gb|CN141270.1|CN141270 OX1_50_H11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_H11_A002 3', mRNA sequence
Length = 786
Score = 743 bits (375), Expect = 0.0
Identities = 444/467 (95%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 467 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 408
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 407 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 348
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 288
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 287 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 228
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 227 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 168
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttgcaaggccaaatgaatt 658
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 167 accacacccaagccttgtaaccacatgcagctcgttgtcatttgcaaggccaaatggatt 108
Query: 659 tgtctggagtagccagtctttgagggactcatatacagcgaagttgagaccaacatatgg 718
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 107 tgtctggagtagccagtctttgagggactcatatacagcaaagttgaggccaacatatgg 48
Query: 719 aacaactccgattacagatggaagccaccctttgtatagagcacgaa 765
||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 47 aacaactccgattacagatggaagccaccctctgtataaagcacgaa 1
Score = 101 bits (51), Expect = 2e-019
Identities = 143/168 (85%), Gaps = 13/168 (7%)
Strand = Plus / Minus
Query: 21 aatcaactgttagcagcacgtagtaccgcttt-aagttcaaaaatctcggtacatcatca 79
|||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||| ||
Sbjct: 772 aatcaactattagcagcacgcaataccgcttttaagttcaa---tctcggtacatcaaca 716
Query: 80 ataaggaatagatttcttttgatgagttaggcagatgcttaataagctttacagccgact 139
| || | |||||| || |||||||||||| |||||||| |||||||||||| |||
Sbjct: 715 a---gggacagatttttt---atgagttaggcaaatgcttaa--agctttacagccaact 664
Query: 140 tattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
|||||||||| || ||| ||||| ||||||||||||||||||||||||
Sbjct: 663 tattacttttcgcgcgatccagc-aacaattctaggacctgaagccag 617
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 590 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 535
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 525 aactccccaaaacctacaaaaatagcagttgataacg 489
>gb|AW565645.1|AW565645 LG1_347_F03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 695
Score = 735 bits (371), Expect = 0.0
Identities = 440/463 (95%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 463 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 404
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 403 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 344
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 284
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 283 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 224
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 223 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 164
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttgcaaggccaaatgaatt 658
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 163 accacacccaagccttgtaaccacatgcagctcgttgtcatttgcaaggccaaatggatt 104
Query: 659 tgtctggagtagccagtctttgagggactcatatacagcgaagttgagaccaacatatgg 718
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 103 tgtctggagtagccagtctttgagggactcatatacagcaaagttgaggccaacatatgg 44
Query: 719 aacaactccgattacagatggaagccaccctttgtatagagca 761
||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 43 aacaactccgattacagatggaagccaccctctgtataaagca 1
Score = 91.7 bits (46), Expect = 2e-016
Identities = 77/85 (90%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 103 gagttaggcagatgcttaataagctttacagccgacttattactttttgcacgacccagc 162
|||||||||| |||||||| |||||||||||| ||||||||||||| || ||| |||||
Sbjct: 695 gagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcgatccagc 638
Query: 163 aaacaattctaggacctgaagccag 187
||||||||||||||||||||||||
Sbjct: 637 -aacaattctaggacctgaagccag 614
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 586 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 531
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 521 aactccccaaaacctacaaaaatagcagttgataacg 485
>gb|CN135496.1|CN135496 OX1_37_E04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_37_E04_A002 3', mRNA sequence
Length = 775
Score = 729 bits (368), Expect = 0.0
Identities = 449/476 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 476 tcagtctgaaatcctcatctctactcctagcacatccttcacaacctcataagtgacaaa 417
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
|||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 416 tgcaatggcaattgagggcaccaccttgacggaattcggaacaagacccttgtacagagc 357
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 356 accagcgccttcatgacgaagagtcttcctgaatgcatcgatcatgccattgtactggag 297
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 296 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 237
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 236 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 177
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttgcaaggccaaatgaatt 658
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 176 accacacccaagccttgtaaccacatgcagctcgttgtcatttgcaaggccaaatggatt 117
Query: 659 tgtctggagtagccagtctttgagggactcatatacagcgaagttgagaccaacatatgg 718
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 116 tgtctggagtagccagtctttgagggactcatatacagcaaagttgaggccaacatatgg 57
Query: 719 aacaactccgattacagatggaagccaccctttgtatagagcacgaaagccttctt 774
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 56 aacaactccgattacagatggaagccaccctctgtataaagcacgaaagccttctt 1
Score = 89.7 bits (45), Expect = 6e-016
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 714 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 657
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||| ||||||||
Sbjct: 656 atccagc-aacaattctaggaccggaagccag 626
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 599 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 544
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 534 aactccccaaaacctacaaaaatagcagttgataacg 498
>gb|CD229550.1|CD229550 CCC1_16_B10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_16_B10_A007 5', mRNA sequence
Length = 738
Score = 712 bits (359), Expect = 0.0
Identities = 438/463 (94%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 788 acccagtgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgat 847
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 738 acccagtgcatgaaacataccacggtactggtagggagacttgtctgtctgaacagtgat 679
Query: 848 ccttcccctaacc-atatccatcgggtaagtagcagacatagctatgataccagcacatg 906
||| ||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 678 cctaccccttacccatatccattgggtaagtagcagacatggctatgataccagcacacg 619
Query: 907 ctccagctccaaggcgcaagagcggagtaagctgagcatcctcttcaccagtctgttgac 966
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 618 ctccagctccaaggcgcaagagtggagtaagctgagcatcctcttccccagtctgttgac 559
Query: 967 ggtaggcccacagaattccctttgacgcctgctcgtagctaaaaaacttcacggcagaat 1026
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 ggtaagcccacagaattccctttgccgcctgctcgtagctaaaaaacttcacggcagaat 499
Query: 1027 ttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacggaggccctctg 1086
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 498 ttggaacgatccttgcacaattggtgccattgcccttgaaaagtccacggaggccctcag 439
Query: 1087 ttctccagatatacttgagaccctgaacagtaccattgtacttgatgctgtgcggatttt 1146
|||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||
Sbjct: 438 ttctccagatatacttgagaccctgaactgtaccgttgtacttaatgctgtgtggatttt 379
Query: 1147 gaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagacactccgc 1206
||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 378 gaacctgaagcaagattttcaatcgttcgagtggagcaacagcagtacgtgacactcctc 319
Query: 1207 ctgctacgccgccggcgacgagcgacttgcagatggtgaggat 1249
| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 318 ccgcgacgccaccggcgacgagcgacttgcagatggtgaggat 276
>gb|CN141346.1|CN141346 OX1_50_H11.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_H11_A002 5', mRNA sequence
Length = 355
Score = 593 bits (299), Expect = e-167
Identities = 341/355 (96%)
Strand = Plus / Minus
Query: 771 tcttcacggtagactgtacccagtgcatgaaacataccacggtactggtagggagatttg 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 355 tcttcacggtagactgtacccagtgcatgaaacataccacggtactggtagggagacttg 296
Query: 831 tctgtctgaacagtgatccttcccctaaccatatccatcgggtaagtagcagacatagct 890
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 295 tctgtctgaacagtgatcctacccctaaccatatccattgggtaagtagcagacatggct 236
Query: 891 atgataccagcacatgctccagctccaaggcgcaagagcggagtaagctgagcatcctct 950
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 235 atgataccagcacacgctccagctccaaggcgcaagagtggagtaagctgagcatcctct 176
Query: 951 tcaccagtctgttgacggtaggcccacagaattccctttgacgcctgctcgtagctaaaa 1010
|| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 175 tccccagtctgttgacggtaagcccacagaattccctttgccgcctgctcgtagctaaaa 116
Query: 1011 aacttcacggcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagt 1070
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 115 aacttcacggcagaatttggaacgatccttgcacaattggtgccattgcccttgaaaagt 56
Query: 1071 ccacggaggccctctgttctccagatatacttgagaccctgaacagtaccattgt 1125
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 55 ccacggaggccctcagttctccagatatacttgagaccctgaactgtaccgttgt 1
>gb|CF488505.1|CF488505 POL1_50_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_A05_A002 5', mRNA sequence
Length = 688
Score = 585 bits (295), Expect = e-165
Identities = 358/379 (94%)
Strand = Plus / Minus
Query: 871 ggtaagtagcagacatagctatgataccagcacatgctccagctccaaggcgcaagagcg 930
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 683 ggtaagtagcagacatggctatgataccagcacacgctccagctccaaggcgcaagagtg 624
Query: 931 gagtaagctgagcatcctcttcaccagtctgttgacggtaggcccacagaattccctttg 990
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 623 gagtaagctgagcatcctcttccccagtctgttgacggtaagcccacagaattccctttg 564
Query: 991 acgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatccttgcacaattgg 1050
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 563 ccgcctgctcgtagctaaaaaacttcacggcagaatttggaacgatccttgcacaattgg 504
Query: 1051 taccattgcccttgaaaagtccacggaggccctctgttctccagatatacttgagaccct 1110
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 503 tgccattgcccttgaaaagtccacggaggccctcagttctccagatatgcttgagaccct 444
Query: 1111 gaacagtaccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatc 1170
|||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 443 gaactgtaccgttgtacttaatgctgtgtggattttgaacctgaagcaagattttcaatc 384
Query: 1171 gttcaagtggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcg 1230
|||| |||||||||||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 383 gttcgagtggagcaacagcagtacgtgacactcctcccgcgacgccaccggcgacgagcg 324
Query: 1231 acttgcagatggtgaggat 1249
|||||||||||||||||||
Sbjct: 323 acttgcagatggtgaggat 305
>gb|CD210234.1|CD210234 HS1_57_C09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_57_C09_A012 5', mRNA sequence
Length = 678
Score = 577 bits (291), Expect = e-163
Identities = 357/379 (94%)
Strand = Plus / Minus
Query: 871 ggtaagtagcagacatagctatgataccagcacatgctccagctccaaggcgcaagagcg 930
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 678 ggtaagtagcagacatggctatgataccagcacacgctccagctccaaggcgcaagagtg 619
Query: 931 gagtaagctgagcatcctcttcaccagtctgttgacggtaggcccacagaattccctttg 990
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 618 gagtaagctgagcatcctcttccacagtctgttgacggtaagcccacagaattccctttg 559
Query: 991 acgcctgctcgtagctaaaaaacttcacggcagaatttggaacaatccttgcacaattgg 1050
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 558 ccgcctgctcgtagctaaaaaacttcacggcagaattcggaacgatccttgcacaattgg 499
Query: 1051 taccattgcccttgaaaagtccacggaggccctctgttctccagatatacttgagaccct 1110
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 498 tgccattgcccttgaaaagtccacggaggccctcagttctccagatatacttgagaccct 439
Query: 1111 gaacagtaccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatc 1170
|||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct: 438 gaactgtaccgttgtacttaatgctgtgtggattttgaacctgaagcaagattttcaatc 379
Query: 1171 gttcaagtggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcg 1230
|||| |||||||||||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 378 gttcgagtggagcaacagcagtacgtgacactcctcccgcgacgccaccggcgacgagcg 319
Query: 1231 acttgcagatggtgaggat 1249
|||||||||||||||||||
Sbjct: 318 acttgcagatggtgaggat 300
>gb|BE599382.1|BE599382 PI1_88_G11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 665
Score = 573 bits (289), Expect = e-161
Identities = 346/365 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 306
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 305 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 246
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 186
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 185 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 126
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 125 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 66
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttgcaaggccaaatgaatt 658
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 65 accacacccaagccttgtaaccacatgcagctcgttgtcatttgcaaggccaaatggatt 6
Query: 659 tgtct 663
|||||
Sbjct: 5 tgtct 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 603 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 546
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||||||||||||
Sbjct: 545 atccagc-aacaattctaggacctgaagccag 515
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 488 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 433
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 423 aactccccaaaacctacaaaaatagcagttgataacg 387
>gb|BE363486.1|BE363486 WS1_63_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 645
Score = 549 bits (277), Expect = e-154
Identities = 331/349 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 349 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 290
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 289 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 230
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 170
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 169 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 110
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 109 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 50
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttgcaagg 647
|||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 49 accacacccaagccttgtaaccacatgcagctcgttgtcatttgcaagg 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 587 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 530
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||||||||||||
Sbjct: 529 atccagc-aacaattctaggacctgaagccag 499
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 472 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 417
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 407 aactccccaaaacctacaaaaatagcagttgataacg 371
>gb|CD223072.1|CD223072 CCC1_25_B04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_25_B04_A007 5', mRNA sequence
Length = 660
Score = 543 bits (274), Expect = e-152
Identities = 331/350 (94%)
Strand = Plus / Minus
Query: 900 gcacatgctccagctccaaggcgcaagagcggagtaagctgagcatcctcttcaccagtc 959
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 660 gcacacgctccagctccaaggcgcaagagtggagtaagctgagcatcctcttccccagtc 601
Query: 960 tgttgacggtaggcccacagaattccctttgacgcctgctcgtagctaaaaaacttcacg 1019
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 600 tgttgacggtaagcccacagaattccctttgccgcctgctcgtagctaaaaaacttcacg 541
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacggagg 1079
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 540 gcagaatttggaacgatccttgcacaattggtgccattgcccttgaaaagtccacggagg 481
Query: 1080 ccctctgttctccagatatacttgagaccctgaacagtaccattgtacttgatgctgtgc 1139
||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 480 ccctcagttctccagatatacttgagaccctgaactgtaccgttgtacttaatgctgtgt 421
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 420 ggattttgaacctgaagcaagattttcaatcgttcgagtggagcaacagcagtacgtgac 361
Query: 1200 actccgcctgctacgccgccggcgacgagcgacttgcagatggtgaggat 1249
||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 360 actcctcccgcgacgccaccggcgacgagcgacttgcagatggtgaggat 311
>gb|CD229470.1|CD229470 CCC1_16_B10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_16_B10_A007 3', mRNA sequence
Length = 645
Score = 543 bits (274), Expect = e-152
Identities = 328/346 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 346 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 287
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 286 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 227
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 167
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 166 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 107
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 106 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 47
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttgca 644
|||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 46 accacacccaagccttgtaaccacatgcagctcgttgtcatttgca 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 584 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 527
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||||||||||||
Sbjct: 526 atccagc-aacaattctaggacctgaagccag 496
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 469 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 414
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 404 aactccccaaaacctacaaaaatagcagttgataacg 368
>gb|BE367378.1|BE367378 PI1_4_F08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 663
Score = 539 bits (272), Expect = e-151
Identities = 326/344 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 344 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 285
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 284 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 225
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 165
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 164 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 105
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 104 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 45
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgtcatttg 642
|||||||||||||||||||| || |||||||||||||||||||
Sbjct: 44 accacacccaagccttgtaaccacatgcagctcgttgtcatttg 1
Score = 101 bits (51), Expect = 2e-019
Identities = 143/168 (85%), Gaps = 13/168 (7%)
Strand = Plus / Minus
Query: 21 aatcaactgttagcagcacgtagtaccgcttt-aagttcaaaaatctcggtacatcatca 79
|||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||| ||
Sbjct: 649 aatcaactattagcagcacgcaataccgcttttaagttcaa---tctcggtacatcaaca 593
Query: 80 ataaggaatagatttcttttgatgagttaggcagatgcttaataagctttacagccgact 139
| || | |||||| || |||||||||||| |||||||| |||||||||||| |||
Sbjct: 592 a---gggacagatttttt---atgagttaggcaaatgcttaa--agctttacagccaact 541
Query: 140 tattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
|||||||||| || ||| ||||| ||||||||||||||||||||||||
Sbjct: 540 tattacttttcgcgcgatccagc-aacaattctaggacctgaagccag 494
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 467 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 412
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 402 aactccccaaaacctacaaaaatagcagttgataacg 366
>gb|CD222955.1|CD222955 CCC1_25_B04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_25_B04_A007 3', mRNA sequence
Length = 656
Score = 519 bits (262), Expect = e-145
Identities = 319/338 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 338 tcagtctgatatcctcatctgtactcctagcacatccttcacaacctcgtaagtgacaaa 279
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 278 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 219
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 159
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 158 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 99
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 98 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 39
Query: 599 tccacacccaagccttgtaactacgtgcagctcgttgt 636
|||||||||||||||||||| || |||||||||||||
Sbjct: 38 accacacccaagccttgtaaccacatgcagctcgttgt 1
Score = 93.7 bits (47), Expect = 4e-017
Identities = 142/168 (84%), Gaps = 13/168 (7%)
Strand = Plus / Minus
Query: 21 aatcaactgttagcagcacgtagtaccgcttt-aagttcaaaaatctcggtacatcatca 79
|||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||| ||
Sbjct: 643 aatcaactattagcagcacgcaataccgcttttaagttcaa---tctcggtacatcaaca 587
Query: 80 ataaggaatagatttcttttgatgagttaggcagatgcttaataagctttacagccgact 139
| || | |||||| || |||||||||||| |||||||| |||||||||||| |||
Sbjct: 586 a---gggacagatttttt---atgagttaggcaaatgcttaa--agctttacagccaact 535
Query: 140 tattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
|||||||||| || ||| ||||| ||||||||||||||| ||||||||
Sbjct: 534 tattacttttcgcgcgatccagc-aacaattctaggacccgaagccag 488
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 461 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 406
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 396 aactccccaaaacctacaaaaatagcagttgataacg 360
>gb|BZ692853.1|BZ692853 SP__Ba0026O14.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0026O14 3', DNA sequence
Length = 1149
Score = 517 bits (261), Expect = e-145
Identities = 321/341 (94%)
Strand = Plus / Plus
Query: 381 accttgactgagttcggcacaagacccttgtagagagcaccaactccttcatgacgaaca 440
||||||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 468 accttgactgaattcggaacaagacccttgtacagagcaccagcgccttcatgacgaaca 527
Query: 441 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgccttgcccagta 500
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 528 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgcctttcccagta 587
Query: 501 acaatagagtcagcatggctccaaccaaccatctgcattcttctcctgatgacatcaagc 560
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atgatagagtcagcatggttccaaccaaccatctgcattcttctcctgatgacatcaaga 647
Query: 561 gggtatgcaacagtctggccaatggttcccgccacagctccacacccaagccttgtaact 620
|| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 648 ggatatgcaacagtctggccaatagtcccagccacagctccacacccaagccttgtaacc 707
Query: 621 acgtgcagctcgttgtcatttgcaaggccaaatgaatttgtctggagtagccagtctttg 680
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 708 acatgcagctcgttgtcatttgcaaggccaaatggatttgtctggagtagccagtctttg 767
Query: 681 agggactcatatacagcgaagttgagaccaacatatggaac 721
||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 768 agggactcatatacagcaaagttgaggccaacatacggaac 808
Score = 163 bits (82), Expect = 5e-038
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 197 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 256
Query: 359 tgcaatggcaattgagggcaccacct 384
||||||||||||||||||||||||||
Sbjct: 257 tgcaatggcaattgagggcaccacct 282
Score = 137 bits (69), Expect = 3e-030
Identities = 101/109 (92%), Gaps = 2/109 (1%)
Strand = Plus / Plus
Query: 720 acaactccgattacagatggaagccaccctttgtatagagcacgaaa-gccttcttcacg 778
|||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct: 918 acaactccgattacagatggaagccaccctctgtataaagcacgaaaagccttcttcacg 977
Query: 779 gtagactgtacccagtgcatgaaacat-accacggtactggtagggaga 826
| ||||||||||||||||||||||||| || |||| ||||||| |||||
Sbjct: 978 ggagactgtacccagtgcatgaaacataacaacggaactggtaaggaga 1026
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 74 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 129
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 139 aactccccaaaacctacaaaaatagcagttgataacg 175
>gb|CW786742.1|CW786742 SP__Ba0026O14.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0026O14 3', DNA sequence
Length = 906
Score = 517 bits (261), Expect = e-145
Identities = 321/341 (94%)
Strand = Plus / Plus
Query: 381 accttgactgagttcggcacaagacccttgtagagagcaccaactccttcatgacgaaca 440
||||||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 479 accttgactgaattcggaacaagacccttgtacagagcaccagcgccttcatgacgaaca 538
Query: 441 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgccttgcccagta 500
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 539 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgcctttcccagta 598
Query: 501 acaatagagtcagcatggctccaaccaaccatctgcattcttctcctgatgacatcaagc 560
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atgatagagtcagcatggttccaaccaaccatctgcattcttctcctgatgacatcaaga 658
Query: 561 gggtatgcaacagtctggccaatggttcccgccacagctccacacccaagccttgtaact 620
|| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 659 ggatatgcaacagtctggccaatagtcccagccacagctccacacccaagccttgtaacc 718
Query: 621 acgtgcagctcgttgtcatttgcaaggccaaatgaatttgtctggagtagccagtctttg 680
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 719 acatgcagctcgttgtcatttgcaaggccaaatggatttgtctggagtagccagtctttg 778
Query: 681 agggactcatatacagcgaagttgagaccaacatatggaac 721
||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 779 agggactcatatacagcaaagttgaggccaacatacggaac 819
Score = 163 bits (82), Expect = 5e-038
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 208 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 267
Query: 359 tgcaatggcaattgagggcaccacct 384
||||||||||||||||||||||||||
Sbjct: 268 tgcaatggcaattgagggcaccacct 293
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 85 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 140
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 150 aactccccaaaacctacaaaaatagcagttgataacg 186
>gb|CF481994.1|CF481994 POL1_76_A01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_A01_A002 3', mRNA sequence
Length = 651
Score = 509 bits (257), Expect = e-142
Identities = 305/321 (95%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 332 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 273
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 272 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 213
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 153
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 152 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 93
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 92 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 33
Query: 599 tccacacccaagccttgtaac 619
||||||||||||||||||||
Sbjct: 32 accacacccaagccttgtaac 12
Score = 101 bits (51), Expect = 2e-019
Identities = 143/168 (85%), Gaps = 13/168 (7%)
Strand = Plus / Minus
Query: 21 aatcaactgttagcagcacgtagtaccgcttt-aagttcaaaaatctcggtacatcatca 79
|||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||| ||
Sbjct: 637 aatcaactattagcagcacgcaataccgcttttaagttcaa---tctcggtacatcaaca 581
Query: 80 ataaggaatagatttcttttgatgagttaggcagatgcttaataagctttacagccgact 139
| || | |||||| || |||||||||||| |||||||| |||||||||||| |||
Sbjct: 580 a---gggacagatttttt---atgagttaggcaaatgcttaa--agctttacagccaact 529
Query: 140 tattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
|||||||||| || ||| ||||| ||||||||||||||||||||||||
Sbjct: 528 tattacttttcgcgcgatccagc-aacaattctaggacctgaagccag 482
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 455 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 400
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 390 aactccccaaaacctacaaaaatagcagttgataacg 354
>gb|CD210133.1|CD210133 HS1_57_C09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_57_C09_A012 3', mRNA sequence
Length = 628
Score = 502 bits (253), Expect = e-140
Identities = 304/321 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 329 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 270
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 269 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 210
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 209 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattggactggag 150
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 149 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 90
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 89 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 30
Query: 599 tccacacccaagccttgtaac 619
||||||||||||||||||||
Sbjct: 29 accacacccaagccttgtaac 9
Score = 97.6 bits (49), Expect = 2e-018
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 567 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 510
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||||||||||||
Sbjct: 509 atccagc-aacaattctaggacctgaagccag 479
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 452 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 397
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 387 aactccccaaaacctacaaaaatagcagttgataacg 351
>gb|CB924926.1|CB924926 ABA1_29_C02.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_C02_A012 3', mRNA sequence
Length = 601
Score = 468 bits (236), Expect = e-130
Identities = 284/300 (94%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 302 tcagtctgatatcctcatttctactcctagcacatccttcacaacctcgtaagtgacaaa 243
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 242 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 183
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 123
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 122 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 63
Query: 539 tcttctcctgatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagc 598
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 62 tcttctcctgatgacatcaagaggatatgcaacagtctggccaatagtcccagccacagc 3
Score = 97.6 bits (49), Expect = 2e-018
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 540 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 483
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||||||||||||
Sbjct: 482 atccagc-aacaattctaggacctgaagccag 452
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 425 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 370
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 360 aactccccaaaacctacaaaaatagcagttgataacg 324
>gb|BM326174.1|BM326174 PIC1_66_G05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 503
Score = 462 bits (233), Expect = e-128
Identities = 284/301 (94%)
Strand = Plus / Minus
Query: 949 cttcaccagtctgttgacggtaggcccacagaattccctttgacgcctgctcgtagctaa 1008
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 503 cttccccagtctgttgacggtaagcccacagaattccctttgccgcctgctcgtagctaa 444
Query: 1009 aaaacttcacggcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaa 1068
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 443 aaaacttcacggcagaatttggaacgatccttgcacaattggtgccattgcccttgaaaa 384
Query: 1069 gtccacggaggccctctgttctccagatatacttgagaccctgaacagtaccattgtact 1128
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 383 gtccacggaggccctcagttctccagatatacttgagaccctgaactgtaccgttgtact 324
Query: 1129 tgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacag 1188
| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 323 taatgctgtgtggattttgaacctgaagcaagattttcaatcgttcgagtggagcaacag 264
Query: 1189 cagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcagatggtgagga 1248
||||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct: 263 cagtacgtgacactcctcccgcgacgccaccggcgacgagcgacttgcagatggtgagga 204
Query: 1249 t 1249
|
Sbjct: 203 t 203
>gb|BM331477.1|BM331477 PIC1_66_G05.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 591
Score = 426 bits (215), Expect = e-117
Identities = 245/255 (96%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 255 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 196
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 195 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 136
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 76
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 75 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 16
Query: 539 tcttctcctgatgac 553
|||||||||||||||
Sbjct: 15 tcttctcctgatgac 1
Score = 101 bits (51), Expect = 2e-019
Identities = 143/168 (85%), Gaps = 13/168 (7%)
Strand = Plus / Minus
Query: 21 aatcaactgttagcagcacgtagtaccgcttt-aagttcaaaaatctcggtacatcatca 79
|||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||| ||
Sbjct: 560 aatcaactattagcagcacgcaataccgcttttaagttcaa---tctcggtacatcaaca 504
Query: 80 ataaggaatagatttcttttgatgagttaggcagatgcttaataagctttacagccgact 139
| || | |||||| || |||||||||||| |||||||| |||||||||||| |||
Sbjct: 503 a---gggacagatttttt---atgagttaggcaaatgcttaa--agctttacagccaact 452
Query: 140 tattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
|||||||||| || ||| ||||| ||||||||||||||||||||||||
Sbjct: 451 tattacttttcgcgcgatccagc-aacaattctaggacctgaagccag 405
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 378 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 323
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 313 aactccccaaaacctacaaaaatagcagttgataacg 277
>gb|CF487029.1|CF487029 POL1_41_G08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_41_G08_A002 3', mRNA sequence
Length = 590
Score = 422 bits (213), Expect = e-116
Identities = 243/253 (96%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 253 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 194
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 193 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 134
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 74
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcat 538
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 73 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatctgcat 14
Query: 539 tcttctcctgatg 551
|||||||||||||
Sbjct: 13 tcttctcctgatg 1
Score = 117 bits (59), Expect = 3e-024
Identities = 160/187 (85%), Gaps = 15/187 (8%)
Strand = Plus / Minus
Query: 4 ggcaaagaaaaatcatta--atcaactgttagcagcacgtagtaccgcttt-aagttcaa 60
|||| ||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 577 ggcagagaaaaatcattagaatcaactattagcagcacgtaataccgcttttaagttcaa 518
Query: 61 aaatctcggtacatcatcaataaggaatagatttcttttgatgagttaggcagatgctta 120
||||||||||||| ||| || | |||||| || |||||||||||| |||||||
Sbjct: 517 ---tctcggtacatcaacaa---gggacagatttttt---atgagttaggcaaatgctta 467
Query: 121 ataagctttacagccgacttattactttttgcacgacccagcaaacaattctaggacctg 180
| |||||||||||| ||||||||||||| || ||| ||||| |||||||||||||||||
Sbjct: 466 a--agctttacagccaacttattacttttcgcgcgatccagc-aacaattctaggacctg 410
Query: 181 aagccag 187
|||||||
Sbjct: 409 aagccag 403
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 376 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 321
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 311 aactccccaaaacctacaaaaatagcagttgataacg 275
>gb|AW678947.1|AW678947 WS1_21_F01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 250
Score = 406 bits (205), Expect = e-111
Identities = 229/237 (96%)
Strand = Plus / Minus
Query: 624 tgcagctcgttgtcatttgcaaggccaaatgaatttgtctggagtagccagtctttgagg 683
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 tgcagctcgttgtcatgtgcaaggccaaatgtatttgtctggagtagccagtctttgagg 185
Query: 684 gactcatatacagcgaagttgagaccaacatatggaacaactccgattacagatggaagc 743
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 184 gactcatatacagcaaagttgaggccaacatatggaacaactccgattacagatggaagc 125
Query: 744 caccctttgtatagagcacgaaagccttcttcacggtagactgtacccagtgcatgaaac 803
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caccctctgtataaagcacgaaagccttcttcacggtagactgtacccagtgcatgaaac 65
Query: 804 ataccacggtactggtagggagatttgtctgtctgaacagtgatccttcccctaacc 860
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 64 ataccacggtactggtagggagacttgtctgtctgaacagtgatcctacccctaacc 8
>gb|AW678978.1|AW678978 WS1_21_F01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 389 bits (196), Expect = e-106
Identities = 226/236 (95%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 236 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 177
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 176 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 117
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 57
Query: 479 tgcttctttgccttgcccagtaacaatagagtcagcatggctccaaccaaccatct 534
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct: 56 tgcttctttgcctttcccagtaatgatagagtcagcatggttccaaccaaccatct 1
Score = 111 bits (56), Expect = 2e-022
Identities = 157/184 (85%), Gaps = 15/184 (8%)
Strand = Plus / Minus
Query: 7 aaagaaaaatcattaa--tcaactgttagcagcacgtagtaccgcttt-aagttcaaaaa 63
|||||||||||||||| |||||| ||||||||||| | ||||||||| ||||||||
Sbjct: 557 aaagaaaaatcattaaaatcaactattagcagcacgcaataccgcttttaagttcaa--- 501
Query: 64 tctcggtacatcatcaataaggaatagatttcttttgatgagttaggcagatgcttaata 123
||||||||||||| ||| || | |||||| || |||||||||||| ||||||||
Sbjct: 500 tctcggtacatcaacaa---gggacagatttttt---atgagttaggcaaatgcttaa-- 449
Query: 124 agctttacagccgacttattactttttgcacgacccagcaaacaattctaggacctgaag 183
|||||||||||| ||||||||||||| || ||| ||||| ||||||||||||||||||||
Sbjct: 448 agctttacagccaacttattacttttcgcgcgatccagc-aacaattctaggacctgaag 390
Query: 184 ccag 187
||||
Sbjct: 389 ccag 386
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 359 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 304
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 294 aactccccaaaacctacaaaaatagcagttgataacg 258
>gb|BE592460.1|BE592460 WS1_89_B02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 525
Score = 387 bits (195), Expect = e-105
Identities = 237/251 (94%)
Strand = Plus / Minus
Query: 999 tcgtagctaaaaaacttcacggcagaatttggaacaatccttgcacaattggtaccattg 1058
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 525 tcgtagctaaaaaacttcacggcagaatttggaacgatccttgcacaattggtgccattg 466
Query: 1059 cccttgaaaagtccacggaggccctctgttctccagatatacttgagaccctgaacagta 1118
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 465 cccttgaaaagtccacggaggccctcagttctccagatatacttgagaccctgaactgta 406
Query: 1119 ccattgtacttgatgctgtgcggattttgaacctgaagcaatattttcaatcgttcaagt 1178
|| |||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 405 ccgttgtacttaatgctgtgtggattttgaacctgaagcaagattttcaatcgttcgagt 346
Query: 1179 ggagcaacagcagtacgagacactccgcctgctacgccgccggcgacgagcgacttgcag 1238
||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||||
Sbjct: 345 ggagcaacagcagtacgtgacactcctcccgcgacgccaccggcgacgagcgacttgcag 286
Query: 1239 atggtgaggat 1249
|||||||||||
Sbjct: 285 atggtgaggat 275
>gb|BG049700.1|BG049700 EM1_7_H11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 529
Score = 331 bits (167), Expect = 9e-089
Identities = 194/203 (95%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 208 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagggacaaa 149
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 148 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 89
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 88 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccattggactggag 29
Query: 479 tgcttctttgccttgcccagtaa 501
|||||||||||||| ||||||||
Sbjct: 28 tgcttctttgcctttcccagtaa 6
Score = 107 bits (54), Expect = 3e-021
Identities = 155/182 (85%), Gaps = 15/182 (8%)
Strand = Plus / Minus
Query: 9 agaaaaatcatta--atcaactgttagcagcacgtagtaccgcttt-aagttcaaaaatc 65
||||||||||||| ||||||| ||||||||||| | ||||||||| |||||||| ||
Sbjct: 527 agaaaaatcattagaatcaactattagcagcacgcaataccgcttttaagttcaa---tc 471
Query: 66 tcggtacatcatcaataaggaatagatttcttttgatgagttaggcagatgcttaataag 125
||||||||||| ||| || | |||||| || |||||||||||| |||||||| ||
Sbjct: 470 tcggtacatcaacaa---gggacagatttttt---atgagttaggcaaatgcttaa--ag 419
Query: 126 ctttacagccgacttattactttttgcacgacccagcaaacaattctaggacctgaagcc 185
|||||||||| ||||||||||||| || ||| ||||| ||||||||||||||||||||||
Sbjct: 418 ctttacagccaacttattacttttcgcgcgatccagc-aacaattctaggacctgaagcc 360
Query: 186 ag 187
||
Sbjct: 359 ag 358
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 331 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 276
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 266 aactccccaaaacctacaaaaatagcagttgataacg 230
>gb|BE592152.1|BE592152 WS1_89_B02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 436
Score = 317 bits (160), Expect = 1e-084
Identities = 184/192 (95%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 192 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 133
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 132 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 73
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggag 478
|||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 72 accagcgccttcatgacgaacagtcttgctgaatgcatggatcatgccattgtactggag 13
Query: 479 tgcttctttgcc 490
||||||||||||
Sbjct: 12 tgcttctttgcc 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 430 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 373
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||||||||||||
Sbjct: 372 atccagc-aacaattctaggacctgaagccag 342
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 315 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 260
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 250 aactccccaaaacctacaaaaatagcagttgataacg 214
>gb|CF072259.1|CF072259 FE1_6_F04.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_6_F04_A002 3', mRNA sequence
Length = 457
Score = 291 bits (147), Expect = 8e-077
Identities = 165/171 (96%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 171 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 112
Query: 359 tgcaatggcaattgagggcaccaccttgactgagttcggcacaagacccttgtagagagc 418
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 111 tgcaatggcaattgagggcaccaccttgactgaattcggaacaagacccttgtacagagc 52
Query: 419 accaactccttcatgacgaacagtcttcctgaatgcatcgatcatgccatt 469
|||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 accagcgccttcatgacgaacagtcttcctgaatgcatcgatcatgccatt 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 96 ttttgatgagttaggcagatgcttaataagctttacagccgacttattactttttgcacg 155
|||| |||||||||||| |||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 409 tttttatgagttaggcaaatgcttaa--agctttacagccaacttattacttttcgcgcg 352
Query: 156 acccagcaaacaattctaggacctgaagccag 187
| ||||| ||||||||||||||||||||||||
Sbjct: 351 atccagc-aacaattctaggacctgaagccag 321
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 294 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 239
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 229 aactccccaaaacctacaaaaatagcagttgataacg 193
>gb|AW671496.1|AW671496 LG1_347_F03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 489
Score = 244 bits (123), Expect = 2e-062
Identities = 159/171 (92%)
Strand = Plus / Minus
Query: 1079 gccctctgttctccagatatacttgagaccctgaacagtaccattgtacttgatgctgtg 1138
|||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 489 gccctcagttctccagatatacttgagaccctgaactgtaccgttgtacttaatgctgtg 430
Query: 1139 cggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgaga 1198
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 429 tggattttgaacctgaagcaagattttcaatcgttcgagtggagcaacagcagtacgtga 370
Query: 1199 cactccgcctgctacgccgccggcgacgagcgacttgcagatggtgaggat 1249
|||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 369 cactcctcccgcgacgccaccggcgacgagcgacttgcagatggtgaggat 319
>gb|BZ694184.1|BZ694184 SP__Ba0043L19.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0043L19 5', DNA sequence
Length = 611
Score = 202 bits (102), Expect = 6e-050
Identities = 126/134 (94%)
Strand = Plus / Plus
Query: 381 accttgactgagttcggcacaagacccttgtagagagcaccaactccttcatgacgaaca 440
||||||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 478 accttgactgaattcggaacaagacccttgtacagagcaccagcgccttcatgacgaaca 537
Query: 441 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgccttgcccagta 500
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 538 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgcctttcccagta 597
Query: 501 acaatagagtcagc 514
| |||||||||||
Sbjct: 598 atgatagagtcagc 611
Score = 163 bits (82), Expect = 5e-038
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 207 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 266
Query: 359 tgcaatggcaattgagggcaccacct 384
||||||||||||||||||||||||||
Sbjct: 267 tgcaatggcaattgagggcaccacct 292
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 84 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 139
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 137 acttattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
||||||||||||| || ||| ||||||| ||||||||||||||||||||||
Sbjct: 8 acttattacttttcgcgcgatccagcaa-caattctaggacctgaagccag 57
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 149 aactccccaaaacctacaaaaatagcagttgataacg 185
>gb|CW788306.1|CW788306 SP__Ba0043L19.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0043L19 5', DNA sequence
Length = 603
Score = 192 bits (97), Expect = 6e-047
Identities = 115/121 (95%)
Strand = Plus / Plus
Query: 381 accttgactgagttcggcacaagacccttgtagagagcaccaactccttcatgacgaaca 440
||||||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 479 accttgactgaattcggaacaagacccttgtacagagcaccagcgccttcatgacgaaca 538
Query: 441 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgccttgcccagta 500
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 539 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgcctttcccagta 598
Query: 501 a 501
|
Sbjct: 599 a 599
Score = 163 bits (82), Expect = 5e-038
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 208 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 267
Query: 359 tgcaatggcaattgagggcaccacct 384
||||||||||||||||||||||||||
Sbjct: 268 tgcaatggcaattgagggcaccacct 293
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 85 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 140
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 137 acttattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
||||||||||||| || ||| ||||||| ||||||||||||||||||||||
Sbjct: 9 acttattacttttcgcgcgatccagcaa-caattctaggacctgaagccag 58
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 150 aactccccaaaacctacaaaaatagcagttgataacg 186
>gb|CL172678.1|CL172678 104_375_10890320_148_31796_224 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890320, DNA
sequence
Length = 753
Score = 155 bits (78), Expect = 1e-035
Identities = 84/86 (97%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 91 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 32
Query: 359 tgcaatggcaattgagggcaccacct 384
|||||||||||||||||||||||||
Sbjct: 31 agcaatggcaattgagggcaccacct 6
Score = 109 bits (55), Expect = 6e-022
Identities = 159/187 (85%), Gaps = 15/187 (8%)
Strand = Plus / Minus
Query: 4 ggcaaagaaaaatcatta--atcaactgttagcagcacgtagtaccgcttt-aagttcaa 60
|||| ||||||||||||| ||||||| ||||||||||| | ||||||||| ||||||||
Sbjct: 415 ggcagagaaaaatcattagaatcaactattagcagcacgcaataccgcttttaagttcaa 356
Query: 61 aaatctcggtacatcatcaataaggaatagatttcttttgatgagttaggcagatgctta 120
||||||||||||| ||| || | |||||| || |||||||||||| |||||||
Sbjct: 355 ---tctcggtacatcaacaa---gggacagatttttt---atgagttaggcaaatgctta 305
Query: 121 ataagctttacagccgacttattactttttgcacgacccagcaaacaattctaggacctg 180
| |||||||||||| ||||||||||||| || ||| ||||| |||||||||||||||||
Sbjct: 304 a--agctttacagccaacttattacttttcgcgcgatccagc-aacaattctaggacctg 248
Query: 181 aagccag 187
|||||||
Sbjct: 247 aagccag 241
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 214 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 159
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 149 aactccccaaaacctacaaaaatagcagttgataacg 113
>gb|CF756712.1|CF756712 DSAF1_8_C06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_8_C06_A011 3', mRNA sequence
Length = 380
Score = 135 bits (68), Expect = 1e-029
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 299 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 72 tcagtctgatatcctcatctctactcctagcacatccttcacaacctcgtaagtgacaaa 13
Query: 359 tgcaatggcaat 370
||||||||||||
Sbjct: 12 tgcaatggcaat 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 143/169 (84%), Gaps = 14/169 (8%)
Strand = Plus / Minus
Query: 21 aatcaactgttagcagcacgtagtaccgc--tttaagttcaaaaatctcggtacatcatc 78
|||||||| ||||||||||| | |||||| ||||||||| |||||||||| ||||
Sbjct: 378 aatcaactattagcagcacgcaataccgcgttttaagttc---aatctcggta---catc 325
Query: 79 aataaggaatagatttcttttgatgagttaggcagatgcttaataagctttacagccgac 138
|| |||| | |||| |||| |||||||||||| ||||||| ||||||||||||| ||
Sbjct: 324 aacaagggacagat---tttttatgagttaggcaaatgctta--aagctttacagccaac 270
Query: 139 ttattactttttgcacgacccagcaaacaattctaggacctgaagccag 187
||||||||||| || ||| ||||| ||||||||||||||||||||||||
Sbjct: 269 ttattacttttcgcgcgatccagc-aacaattctaggacctgaagccag 222
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 195 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 140
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 130 aactccccaaaacctacaaaaatagcagttgataacg 94
>gb|AI724308.1|AI724308 RHIZ1_34_B02.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 342
Score = 99.6 bits (50), Expect = 6e-019
Identities = 154/182 (84%), Gaps = 15/182 (8%)
Strand = Plus / Minus
Query: 9 agaaaaatcatta--atcaactgttagcagcacgtagtaccgcttt-aagttcaaaaatc 65
||||||||||||| ||||||| ||||||||||| | ||||||||| |||||||| ||
Sbjct: 340 agaaaaatcattagaatcaactattagcagcacgcaataccgcttttaagttcaa---tc 284
Query: 66 tcggtacatcatcaataaggaatagatttcttttgatgagttaggcagatgcttaataag 125
||||||||||| ||| || | |||||| || |||||||||||| |||||||| ||
Sbjct: 283 tcggtacatcaacaa---gggacagatttttt---atgagttaggcaaatgcttaa--ag 232
Query: 126 ctttacagccgacttattactttttgcacgacccagcaaacaattctaggacctgaagcc 185
|||||||||| ||||||||||||| || ||| ||||| ||||||| ||||||||||||||
Sbjct: 231 ctttacagccaacttattacttttcgcgcgatccagc-aacaattttaggacctgaagcc 173
Query: 186 ag 187
||
Sbjct: 172 ag 171
Score = 63.9 bits (32), Expect = 3e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 189 gagggcctgatgctgaa-tggagccgcggtcatatccttctacccgccctgcctac 243
||||||||||||||||| || |||||| |||||||||| |||| ||||||||||||
Sbjct: 144 gagggcctgatgctgaaatgtagccgcagtcatatcctcctactcgccctgcctac 89
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 255 aacttcccaaagcctacaaaaatagcagttgaaaacg 291
|||| |||||| |||||||||||||||||||| ||||
Sbjct: 79 aactccccaaaacctacaaaaatagcagttgataacg 43
>gb|CW470815.1|CW470815 fsbb001f224d22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f224d22, DNA
sequence
Length = 628
Score = 83.8 bits (42), Expect = 4e-014
Identities = 153/182 (84%), Gaps = 16/182 (8%)
Strand = Plus / Minus
Query: 4 ggcaaagaaaaatcatta--atcaactgttagcagcacgtagtaccgcttt-aagttcaa 60
|||| ||||||||||||| ||||||| ||||||||||| | ||||||||| ||||||||
Sbjct: 169 ggcagagaaaaatcattagaatcaactattagcagcacgcaataccgcttttaagttcaa 110
Query: 61 aaatctcggtacatcatcaataaggaatagatttcttttgatgagttaggcagatgctta 120
||||||||||||| ||| || | |||||| || |||||||||||| |||||||
Sbjct: 109 ---tctcggtacatcaacaa---gggacagatttttt---atgagttaggcaaatgctta 59
Query: 121 ataagctttacagccgacttattactttttgcacgacccagcaaacaattctaggacctg 180
| |||||||||||| ||||||| ||||| || ||| ||||||| |||||||||||||||
Sbjct: 58 a--agctttacagccaacttatt-cttttcgcgcgatccagcaa-caattctaggacctg 3
Query: 181 aa 182
||
Sbjct: 2 aa 1
>gb|CW193320.1|CW193320 104_616_11179502_116_36780_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179502, DNA
sequence
Length = 562
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 1198 acactccgcctgctacgccgccggcgacgagcgacttgcagatggtgaggat 1249
||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 219 acactcctcccgcgacgccaccggcgacgagcgacttgcagatggtgaggat 270
>gb|CW226752.1|CW226752 104_664_11205053_116_37219_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205053, DNA
sequence
Length = 636
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1198 acactccgcctgctacgccgccggcgacgagcgacttgcagatggtgaggat 1249
||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 414 acactcctcccgcgacgccaccggcgacgagcgacttgcagatggtgaggat 363
>gb|CW235737.1|CW235737 104_691_11215166_148_37492_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215166, DNA
sequence
Length = 670
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 1198 acactccgcctgctacgccgccggcgacgagcgacttgcagatggtgaggat 1249
||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 489 acactcctcccgcgacgccaccggcgacgagcgacttgcagatggtgaggat 540
>gb|CW339369.1|CW339369 104_840_11485239_116_36142_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485239, DNA
sequence
Length = 650
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1198 acactccgcctgctacgccgccggcgacgagcgacttgcagatggtgaggat 1249
||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 acactcctcccgcgacgccaccggcgacgagcgacttgcagatggtgaggat 150
>gb|BG946922.1|BG946922 IP1_1_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 69.9 bits (35), Expect = 6e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 1149 acctgaagcaatattttcaatcgttcaagtggagcaacagcagtacg 1195
||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct: 343 acctgaagcaagattttcattcgttcgagtggagcaacagcagtacg 297
>gb|CW235736.1|CW235736 104_691_11215166_116_37493_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215166, DNA
sequence
Length = 628
Score = 67.9 bits (34), Expect = 2e-009
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 1212 acgccgccggcgacgagcgacttgcagatggtgaggat 1249
||||| ||||||||||||||||||||||||||||||||
Sbjct: 628 acgccaccggcgacgagcgacttgcagatggtgaggat 591
>gb|BG158061.1|BG158061 EM1_7_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 289
Score = 61.9 bits (31), Expect = 1e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1219 cggcgacgagcgacttgcagatggtgaggat 1249
|||||||||||||||||||||||||||||||
Sbjct: 289 cggcgacgagcgacttgcagatggtgaggat 259
>gb|CL172677.1|CL172677 104_375_10890320_116_31797_224 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890320, DNA
sequence
Length = 747
Score = 54.0 bits (27), Expect = 3e-005
Identities = 66/76 (86%), Gaps = 6/76 (7%)
Strand = Plus / Plus
Query: 4 ggcaaagaaaaatcatta--atcaactgttagcagcacgtagtaccgc-tttaagttcaa 60
|||| ||||||||||||| ||||||| ||||||||||| | |||||| |||||||||
Sbjct: 659 ggcagagaaaaatcattagaatcaactattagcagcacgcaataccgcttttaagttc-- 716
Query: 61 aaatctcggtacatca 76
|||||||||||||||
Sbjct: 717 -aatctcggtacatca 731
>gb|BI351253.1|BI351253 IP1_69_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 248
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 25 ccctcgtgccgaattcctgcagcc 2
>gb|BI351259.1|BI351259 IP1_69_B02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 254
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 25 ccctcgtgccgaattcctgcagcc 2
>gb|BI351273.1|BI351273 IP1_69_D02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 245
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 27 ccctcgtgccgaattcctgcagcc 4
>gb|BI351276.1|BI351276 IP1_69_D07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 281
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 28 ccctcgtgccgaattcctgcagcc 5
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 325,821
Number of Sequences: 832831
Number of extensions: 325821
Number of successful extensions: 88365
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88086
Number of HSP's gapped (non-prelim): 184
length of query: 1282
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1262
effective length of database: 474,703,049
effective search space: 599075247838
effective search space used: 599075247838
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)