BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.462
(823 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF704683.1|BF704683 FM1_50_B08.b1_A003 Floral-Induced Me... 807 0.0
gb|AW564395.1|AW564395 LG1_292_F12.b1_A002 Light Grown 1 (L... 795 0.0
gb|BE593143.1|BE593143 WS1_98_A10.g1_A002 Water-stressed 1 ... 795 0.0
gb|CD431873.1|CD431873 ETH1_11_A02.g1_A002 Ethylene-treated... 795 0.0
gb|CN126047.1|CN126047 RHOH1_14_H01.g1_A002 Acid- and alkal... 787 0.0
gb|CN150853.1|CN150853 WOUND1_71_G11.g1_A002 Wounded leaves... 787 0.0
gb|CX608442.1|CX608442 ANR1_38_D08.g1_A002 Anaerobic roots ... 787 0.0
gb|BE593453.1|BE593453 WS1_98_A10.b1_A002 Water-stressed 1 ... 718 0.0
gb|BF482021.1|BF482021 FM1_22_H04.b1_A003 Floral-Induced Me... 656 0.0
gb|CN125957.1|CN125957 RHOH1_14_H01.b1_A002 Acid- and alkal... 587 e-166
gb|BF481909.1|BF481909 FM1_22_H04.g1_A003 Floral-Induced Me... 569 e-160
gb|BF656458.1|BF656458 FM1_50_B08.g1_A003 Floral-Induced Me... 563 e-159
gb|BG240054.1|BG240054 OV1_17_D01.b1_A002 Ovary 1 (OV1) Sor... 551 e-155
gb|BF704815.1|BF704815 FM1_51_H04.b1_A003 Floral-Induced Me... 531 e-149
gb|BG558204.1|BG558204 RHIZ2_64_D04.b1_A003 Rhizome2 (RHIZ2... 529 e-148
gb|CW319235.1|CW319235 104_811_11474377_148_35884_003 Sorgh... 527 e-148
gb|CW417908.1|CW417908 fsbb001f121c05f0 Sorghum methylation... 527 e-148
gb|BE355360.1|BE355360 DG1_114_A03.b1_A002 Dark Grown 1 (DG... 527 e-148
gb|AW680031.1|AW680031 WS1_34_A02.g1_A002 Water-stressed 1 ... 523 e-147
gb|BE355526.1|BE355526 DG1_114_A03.g1_A002 Dark Grown 1 (DG... 523 e-147
gb|CW182557.1|CW182557 104_598_11164141_116_36663_061 Sorgh... 521 e-146
gb|BG410872.1|BG410872 EM1_27_A01.g1_A002 Embryo 1 (EM1) So... 515 e-144
gb|CW129063.1|CW129063 104_511_11114353_148_34760_015 Sorgh... 513 e-144
gb|CW188377.1|CW188377 104_608_11172997_148_36734_061 Sorgh... 513 e-144
gb|CW191309.1|CW191309 104_613_11178426_116_36942_075 Sorgh... 509 e-142
gb|CD213713.1|CD213713 HS1_52_G12.g1_A012 Heat-shocked seed... 505 e-141
gb|BG102543.1|BG102543 RHIZ2_34_D04.g1_A003 Rhizome2 (RHIZ2... 500 e-139
gb|BE917707.1|BE917707 OV1_6_B04.b1_A002 Ovary 1 (OV1) Sorg... 496 e-138
gb|CW297850.1|CW297850 104_780_11462260_116_35647_012 Sorgh... 492 e-137
gb|BG411209.1|BG411209 EM1_27_A01.b1_A002 Embryo 1 (EM1) So... 490 e-136
gb|CW128767.1|CW128767 104_510_11114194_148_34755_039 Sorgh... 488 e-136
gb|BG240440.1|BG240440 OV1_30_A12.b1_A002 Ovary 1 (OV1) Sor... 488 e-136
gb|AW745446.1|AW745446 WS1_34_A02.b1_A002 Water-stressed 1 ... 486 e-135
gb|BG049237.1|BG049237 OV1_17_D01.g1_A002 Ovary 1 (OV1) Sor... 484 e-135
gb|BZ341857.1|BZ341857 ic79b05.g1 WGS-SbicolorF (JM107 adap... 482 e-134
gb|CW155043.1|CW155043 104_557_11145924_116_36362_042 Sorgh... 482 e-134
gb|CW183462.1|CW183462 104_599_11164629_148_36672_089 Sorgh... 482 e-134
gb|AI724175.1|AI724175 RHIZ1_8_A04.y2_A001 Rhizome1 (RHIZ1)... 482 e-134
gb|CD464058.1|CD464058 ETH1_48_H05.b1_A002 Ethylene-treated... 482 e-134
gb|CX606979.1|CX606979 ANR1_6_B05.b1_A002 Anaerobic roots S... 482 e-134
gb|CX607063.1|CX607063 ANR1_6_B05.g1_A002 Anaerobic roots S... 482 e-134
gb|CX610420.1|CX610420 ANR1_18_D02.g1_A002 Anaerobic roots ... 482 e-134
gb|BG488106.1|BG488106 RHIZ2_63_D10.g1_A003 Rhizome2 (RHIZ2... 480 e-133
gb|BG488416.1|BG488416 RHIZ2_63_D10.b1_A003 Rhizome2 (RHIZ2... 480 e-133
gb|BE917630.1|BE917630 OV1_6_B04.g1_A002 Ovary 1 (OV1) Sorg... 476 e-132
gb|BG052252.1|BG052252 RHIZ2_12_B05.g1_A003 Rhizome2 (RHIZ2... 476 e-132
gb|CW410848.1|CW410848 fsbb001f105m09k0 Sorghum methylation... 474 e-132
gb|CD462726.1|CD462726 ETH1_39_B03.g1_A002 Ethylene-treated... 468 e-130
gb|CF071274.1|CF071274 FE1_16_D02.g1_A002 Iron-deficient se... 468 e-130
gb|CL152064.1|CL152064 104_335_10779694_116_31364_094 Sorgh... 462 e-128
gb|BF480763.1|BF480763 FM1_14_F11.g1_A003 Floral-Induced Me... 462 e-128
gb|CD213618.1|CD213618 HS1_52_G12.b1_A012 Heat-shocked seed... 462 e-128
gb|CF072752.1|CF072752 FE1_25_E07.g1_A002 Iron-deficient se... 460 e-127
gb|CW155044.1|CW155044 104_557_11145924_148_36361_042 Sorgh... 448 e-124
gb|BF480894.1|BF480894 FM1_14_F11.b1_A003 Floral-Induced Me... 448 e-124
gb|CW410847.1|CW410847 fsbb001f105m09f0 Sorghum methylation... 438 e-121
gb|BE357369.1|BE357369 DG1_148_A05.g1_A002 Dark Grown 1 (DG... 438 e-121
gb|BE599532.1|BE599532 PI1_88_F07.b1_A002 Pathogen induced ... 438 e-121
gb|CD432572.1|CD432572 ETH1_30_E04.g1_A002 Ethylene-treated... 438 e-121
gb|CF071535.1|CF071535 FE1_17_C03.b1_A002 Iron-deficient se... 438 e-121
gb|CF484983.1|CF484983 POL1_28_F02.g1_A002 Pollen Sorghum b... 436 e-120
gb|CW306661.1|CW306661 104_792_11466961_148_35713_007 Sorgh... 434 e-120
gb|CW361905.1|CW361905 fsbb001f030l13f0 Sorghum methylation... 434 e-120
gb|CX607748.1|CX607748 ANR1_30_B07.g1_A002 Anaerobic roots ... 430 e-119
gb|BE355445.1|BE355445 DG1_114_A03.b2_A002 Dark Grown 1 (DG... 426 e-117
gb|BE599367.1|BE599367 PI1_88_F07.g1_A002 Pathogen induced ... 422 e-116
gb|BE592378.1|BE592378 WS1_94_A05.g1_A002 Water-stressed 1 ... 420 e-116
gb|CF431776.1|CF431776 NIT1_9_B03.b1_A002 Nitrogen-deficien... 406 e-111
gb|CX607662.1|CX607662 ANR1_30_B07.b1_A002 Anaerobic roots ... 406 e-111
gb|CW317075.1|CW317075 104_808_11473223_116_35851_084 Sorgh... 404 e-111
gb|CW463246.1|CW463246 fsbb001f211m02f0 Sorghum methylation... 404 e-111
gb|AI723845.1|AI723845 RHIZ1_28_B06.y1_A001 Rhizome1 (RHIZ1... 396 e-108
gb|CW112587.1|CW112587 104_486_11104970_116_34548_007 Sorgh... 387 e-105
gb|AW286565.1|AW286565 LG1_334_E01.g1_A002 Light Grown 1 (L... 385 e-105
gb|CN150769.1|CN150769 WOUND1_71_G11.b1_A002 Wounded leaves... 383 e-104
gb|BE592516.1|BE592516 WS1_94_A05.b1_A002 Water-stressed 1 ... 367 1e-099
gb|CW182558.1|CW182558 104_598_11164141_148_36664_061 Sorgh... 359 3e-097
gb|AI724242.1|AI724242 RHIZ1_8_B12.y2_A001 Rhizome1 (RHIZ1)... 359 3e-097
gb|BG049096.1|BG049096 OV1_23_C04.g1_A002 Ovary 1 (OV1) Sor... 349 3e-094
gb|CW156116.1|CW156116 104_558_11146509_148_36368_081 Sorgh... 345 4e-093
gb|BG048803.1|BG048803 OV1_23_C04.b1_A002 Ovary 1 (OV1) Sor... 335 4e-090
gb|CF431835.1|CF431835 NIT1_9_B03.g1_A002 Nitrogen-deficien... 333 2e-089
gb|BG052312.1|BG052312 RHIZ2_12_B05.b1_A003 Rhizome2 (RHIZ2... 315 4e-084
gb|BG102866.1|BG102866 RHIZ2_34_D04.b1_A003 Rhizome2 (RHIZ2... 313 1e-083
gb|CF772707.1|CF772707 DSBF1_38_D05.g1_A010 Drought-stresse... 297 8e-079
gb|BF656582.1|BF656582 FM1_51_H04.g1_A003 Floral-Induced Me... 291 5e-077
gb|CF074009.1|CF074009 FE1_9_D12.g1_A002 Iron-deficient see... 289 2e-076
gb|CW070741.1|CW070741 104_322_10590964_114_30544 Sorghum m... 287 8e-076
gb|CW306660.1|CW306660 104_792_11466961_116_35709_007 Sorgh... 280 2e-073
gb|CW191310.1|CW191310 104_613_11178426_148_36941_075 Sorgh... 272 5e-071
gb|CW490111.1|CW490111 fsbb001f275g08k0 Sorghum methylation... 268 7e-070
gb|BG560769.1|BG560769 RHIZ2_64_D04.g1_A003 Rhizome2 (RHIZ2... 268 7e-070
gb|CF430869.1|CF430869 NIT1_1_E01.b1_A002 Nitrogen-deficien... 266 3e-069
gb|CW088567.1|CW088567 104_433_10948227_116_32575_006 Sorgh... 260 2e-067
gb|CW415400.1|CW415400 fsbb001f115h21f0 Sorghum methylation... 244 1e-062
gb|CW105327.1|CW105327 104_474_11012845_116_34450_053 Sorgh... 242 4e-062
gb|CW105328.1|CW105328 104_474_11012845_148_34446_053 Sorgh... 242 4e-062
gb|CW394994.1|CW394994 fsbb001f082n15f0 Sorghum methylation... 242 4e-062
gb|CW432220.1|CW432220 fsbb001f146m24f0 Sorghum methylation... 242 4e-062
gb|AI724884.1|AI724884 RHIZ1_30_G03.y3_A001 Rhizome1 (RHIZ1... 240 2e-061
gb|CL159717.1|CL159717 104_349_10804465_114_31381_289 Sorgh... 232 4e-059
gb|CW104944.1|CW104944 104_474_11012677_148_34448_061 Sorgh... 232 4e-059
gb|AW677105.1|AW677105 DG1_4_H07.b1_A002 Dark Grown 1 (DG1)... 232 4e-059
gb|CW227263.1|CW227263 104_665_11205321_148_37224_037 Sorgh... 226 3e-057
gb|CD431850.1|CD431850 ETH1_11_D10.g1_A002 Ethylene-treated... 204 9e-051
gb|CW394995.1|CW394995 fsbb001f082n15k0 Sorghum methylation... 186 2e-045
gb|CW088569.1|CW088569 104_433_10948227_251_32621_006 Sorgh... 176 2e-042
gb|CW424980.1|CW424980 fsbb001f135j06f0 Sorghum methylation... 159 5e-037
gb|CW113300.1|CW113300 104_487_11105369_148_34551_071 Sorgh... 155 8e-036
gb|AI723852.1|AI723852 RHIZ1_28_C06.y1_A001 Rhizome1 (RHIZ1... 151 1e-034
gb|BE353104.1|BE353104 DG1_4_H07.g1_A002 Dark Grown 1 (DG1)... 151 1e-034
gb|AI724525.1|AI724525 RHIZ1_37_E01.y1_A001 Rhizome1 (RHIZ1... 147 2e-033
gb|CW104943.1|CW104943 104_474_11012677_116_34452_061 Sorgh... 137 2e-030
gb|CW344083.1|CW344083 104_846_11487770_116_36196_005 Sorgh... 133 3e-029
gb|AW282719.1|AW282719 LG1_292_F12.g1_A002 Light Grown 1 (L... 98 2e-018
gb|CD431824.1|CD431824 ETH1_11_A02.b1_A002 Ethylene-treated... 82 9e-014
gb|CW238284.1|CW238284 104_695_11216646_148_37417_029 Sorgh... 80 4e-013
gb|CW105329.1|CW105329 104_474_11012845_148_34479_053 Sorgh... 78 1e-012
gb|CL152063.1|CL152063 104_335_10779694_114_31363_094 Sorgh... 76 6e-012
gb|CW232893.1|CW232893 104_685_11213063_148_37487_084 Sorgh... 74 2e-011
gb|CF483259.1|CF483259 POL1_21_A09.b1_A002 Pollen Sorghum b... 74 2e-011
gb|CW070742.1|CW070742 104_322_10590964_116_30543 Sorghum m... 72 9e-011
gb|CF434162.1|CF434162 NIT1_32_H03.g1_A002 Nitrogen-deficie... 72 9e-011
gb|CW424981.1|CW424981 fsbb001f135j06k0 Sorghum methylation... 70 4e-010
gb|BE358843.1|BE358843 DG1_32_D03.g1_A002 Dark Grown 1 (DG1... 70 4e-010
gb|CW317076.1|CW317076 104_808_11473223_148_35855_084 Sorgh... 64 2e-008
gb|CW049116.1|CW049116 104_288_10513836_114_30200 Sorghum m... 56 5e-006
gb|CW415401.1|CW415401 fsbb001f115h21k0 Sorghum methylation... 52 8e-005
gb|CL179294.1|CL179294 104_388_10895213_148_31909_125 Sorgh... 50 3e-004
gb|CF434134.1|CF434134 NIT1_32_H03.b1_A002 Nitrogen-deficie... 46 0.005
gb|CL170389.1|CL170389 104_371_10813777_116_31791_097 Sorgh... 42 0.080
gb|CL186013.1|CL186013 104_400_10899928_116_32405_056 Sorgh... 42 0.080
gb|CW028004.1|CW028004 104_254_10498833_116_30396 Sorghum m... 42 0.080
gb|CW075106.1|CW075106 104_354_10806478_116_31831_382 Sorgh... 42 0.080
gb|CW233439.1|CW233439 104_686_11213422_116_37376_085 Sorgh... 42 0.080
gb|CW252274.1|CW252274 104_715_11224407_116_35096_060 Sorgh... 42 0.080
gb|CW278768.1|CW278768 104_753_11406722_116_35426_009 Sorgh... 42 0.080
gb|CW367249.1|CW367249 fsbb001f040k10f0 Sorghum methylation... 42 0.080
gb|CW367250.1|CW367250 fsbb001f040k10k0 Sorghum methylation... 42 0.080
gb|BE357302.1|BE357302 DG1_148_A05.b1_A002 Dark Grown 1 (DG... 42 0.080
gb|CW174060.1|CW174060 104_586_11157190_116_36561_095 Sorgh... 40 0.31
gb|CW336928.1|CW336928 104_836_11483863_116_36110_024 Sorgh... 40 0.31
gb|CW336929.1|CW336929 104_836_11483863_148_36106_024 Sorgh... 40 0.31
gb|CW501545.1|CW501545 fsbb001f297g16f0 Sorghum methylation... 40 0.31
gb|BE358231.1|BE358231 DG1_26_E04.b2_A002 Dark Grown 1 (DG1... 40 0.31
gb|BE358809.1|BE358809 DG1_32_G11.b1_A002 Dark Grown 1 (DG1... 40 0.31
gb|BG052031.1|BG052031 RHIZ2_5_B05.b1_A003 Rhizome2 (RHIZ2)... 40 0.31
gb|BI075930.1|BI075930 IP1_23_B04.b1_A002 Immature pannicle... 40 0.31
gb|CD224510.1|CD224510 CCC1_34_E12.g1_A007 Callus culture/c... 40 0.31
gb|CD225808.1|CD225808 CCC1_41_B01.g1_A007 Callus culture/c... 40 0.31
gb|CD462194.1|CD462194 SA1_39_E03.g1_A002 Salicylic acid-tr... 40 0.31
gb|CN133875.1|CN133875 OX1_18_H02.g1_A002 Oxidatively-stres... 40 0.31
gb|CX622880.1|CX622880 GABR1_66_B05.g1_A002 GA- or brassino... 40 0.31
>gb|BF704683.1|BF704683 FM1_50_B08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 563
Score = 807 bits (407), Expect = 0.0
Identities = 449/463 (96%)
Strand = Plus / Plus
Query: 79 catccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggc 138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 69 catccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagccggccgc 128
Query: 139 cgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcc 198
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 129 cgaggagaaggcggagaaggcgcccgcagggaagaagcccaaggccgagaagcgcctgcc 188
Query: 199 cgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 258
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cgcctccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 248
Query: 259 gagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacat 318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccccgacat 308
Query: 319 cggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaa 378
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 309 cggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaa 368
Query: 379 gctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccg 438
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 369 gctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccg 428
Query: 439 cgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctc 498
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 cgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgccgtctc 488
Query: 499 cgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 531
>gb|AW564395.1|AW564395 LG1_292_F12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 568
Score = 795 bits (401), Expect = 0.0
Identities = 452/469 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 58 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 117
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 118 ggccgccgaggagaaggcggagaaggcgcccgcaggaaagaagcccaaggccgagaagcg 177
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 178 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 237
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 238 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 297
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 298 cgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaatgacatctt 357
Query: 373 tgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcac 432
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 358 cgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcac 417
Query: 433 gtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgc 492
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 418 ctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgc 477
Query: 493 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 526
>gb|BE593143.1|BE593143 WS1_98_A10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 596
Score = 795 bits (401), Expect = 0.0
Identities = 452/469 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 63
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 64 ggccgccgaggagaaggcggagaaggcgcccgcaggaaagaagcccaaggccgagaagcg 123
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 124 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 183
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 184 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 243
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 244 cgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaatgacatctt 303
Query: 373 tgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcac 432
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 304 cgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcac 363
Query: 433 gtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgc 492
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 ctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgc 423
Query: 493 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 472
>gb|CD431873.1|CD431873 ETH1_11_A02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_11_A02_A002 5', mRNA sequence
Length = 667
Score = 795 bits (401), Expect = 0.0
Identities = 452/469 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 82 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 141
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 142 ggccgccgaggagaaggcggagaaggcgcccgcaggaaagaagcccaaggccgagaagcg 201
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 202 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 261
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 321
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 322 cgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaatgacatctt 381
Query: 373 tgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcac 432
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 cgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcac 441
Query: 433 gtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgc 492
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 ctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgc 501
Query: 493 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 550
>gb|CN126047.1|CN126047 RHOH1_14_H01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_H01_A002 5', mRNA sequence
Length = 770
Score = 787 bits (397), Expect = 0.0
Identities = 451/469 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 123
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 124 ggccgccgaggagaaggcggagaaggcgcccgcaggaaagaagcccaaggccgagaagcg 183
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 184 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 243
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 244 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 303
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 304 cgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaatggcatctt 363
Query: 373 tgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcac 432
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 cgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcac 423
Query: 433 gtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgc 492
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 424 ctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgc 483
Query: 493 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 532
Score = 65.9 bits (33), Expect = 5e-009
Identities = 76/90 (84%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 618 tagctagcttgcctgctctataaatccggcgcgccggattgtaatggtcctcttagattt 677
|||||||||| |||||| |||||||| | ||||| |||||||| |||||||||||
Sbjct: 661 tagctagcttccctgctttataaatc----gtgccgggttgtaatgcctctcttagattt 716
Query: 678 gatgtccctgttgtggaatatagttgtatc 707
| || ||| |||||||||||||||||||||
Sbjct: 717 gctgcccccgttgtggaatatagttgtatc 746
>gb|CN150853.1|CN150853 WOUND1_71_G11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_71_G11_A002 5', mRNA sequence
Length = 765
Score = 787 bits (397), Expect = 0.0
Identities = 451/469 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 123
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || |||| || |||||||||||||||||||||||
Sbjct: 124 ggccgccgaggagaaggcggagaaggcgcccgctggaaagaagcccaaggccgagaagcg 183
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 184 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 243
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 244 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 303
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 304 cgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaatgacatctt 363
Query: 373 tgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcac 432
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 cgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcac 423
Query: 433 gtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgc 492
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 424 ctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgc 483
Query: 493 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 532
Score = 73.8 bits (37), Expect = 2e-011
Identities = 77/90 (85%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 618 tagctagcttgcctgctctataaatccggcgcgccggattgtaatggtcctcttagattt 677
|||||||||| |||||| |||||||| | |||||||||||||| |||||||||||
Sbjct: 661 tagctagcttccctgctttataaatc----gtgccggattgtaatgcctctcttagattt 716
Query: 678 gatgtccctgttgtggaatatagttgtatc 707
| || ||| |||||||||||||||||||||
Sbjct: 717 gctgcccccgttgtggaatatagttgtatc 746
>gb|CX608442.1|CX608442 ANR1_38_D08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_D08_A002 5', mRNA sequence
Length = 635
Score = 787 bits (397), Expect = 0.0
Identities = 451/469 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 56 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 115
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 116 ggccgccgaggagaaggcggagaaggcgcccgcaggaaagaagcccaaggccgagaagcg 175
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 176 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 235
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 236 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 295
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 296 cgacatcggcatctcctccaaggccatgtccatcatggactccttcatcaatgacatctt 355
Query: 373 tgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcac 432
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 356 cgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcac 415
Query: 433 gtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgc 492
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 416 ctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgc 475
Query: 493 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 524
>gb|BE593453.1|BE593453 WS1_98_A10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 487
Score = 718 bits (362), Expect = 0.0
Identities = 413/430 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 58 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 117
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 118 ggccgccgaggagaaggcggagaaggcgcccgcaggaaagaagcccaaggccgagaagcg 177
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 178 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 237
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 238 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 297
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 298 cgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaatgacatctt 357
Query: 373 tgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcac 432
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 358 cgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcac 417
Query: 433 gtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgc 492
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 418 ctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgc 477
Query: 493 cgtctccgag 502
||||||||||
Sbjct: 478 cgtctccgag 487
>gb|BF482021.1|BF482021 FM1_22_H04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 455
Score = 656 bits (331), Expect = 0.0
Identities = 370/383 (96%)
Strand = Plus / Plus
Query: 79 catccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggc 138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 73 catccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagccggccgc 132
Query: 139 cgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcc 198
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 133 cgaggagaaggcggagaaggcgcccgcagggaagaagcccaaggccgagaagcgcctgcc 192
Query: 199 cgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 258
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cgcctccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 252
Query: 259 gagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacat 318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccccgacat 312
Query: 319 cggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaa 378
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 313 cggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaa 372
Query: 379 gctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccg 438
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 373 gctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccg 432
Query: 439 cgagatccagacctccgtgcgcc 461
||||||||| |||||||||||||
Sbjct: 433 cgagatccaaacctccgtgcgcc 455
>gb|CN125957.1|CN125957 RHOH1_14_H01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_H01_A002 3', mRNA sequence
Length = 781
Score = 587 bits (296), Expect = e-166
Identities = 332/344 (96%)
Strand = Plus / Plus
Query: 198 ccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaaga 257
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggccaaga 60
Query: 258 agagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgaca 317
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccccgaca 120
Query: 318 tcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgaga 377
||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct: 121 tcggcatctcctccaaggccatgtccatcatgaactccttcatcaatggcatcttcgaga 180
Query: 378 agctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtccc 437
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 181 agctcgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctccc 240
Query: 438 gcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtct 497
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 241 gcgagatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgccgtct 300
Query: 498 ccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 344
Score = 65.9 bits (33), Expect = 5e-009
Identities = 76/90 (84%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 618 tagctagcttgcctgctctataaatccggcgcgccggattgtaatggtcctcttagattt 677
|||||||||| |||||| |||||||| | ||||| |||||||| |||||||||||
Sbjct: 473 tagctagcttccctgctttataaatc----gtgccgggttgtaatgcctctcttagattt 528
Query: 678 gatgtccctgttgtggaatatagttgtatc 707
| || ||| |||||||||||||||||||||
Sbjct: 529 gctgcccccgttgtggaatatagttgtatc 558
>gb|BF481909.1|BF481909 FM1_22_H04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 506
Score = 569 bits (287), Expect = e-160
Identities = 311/319 (97%)
Strand = Plus / Plus
Query: 223 gggcggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaagatcta 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 gggcggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaaaatcta 60
Query: 283 catcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccatgtc 342
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61 catcttcaaggtgctgaagcaggtgcaccccgacatcggcatctcctccaaggccatgtc 120
Query: 343 catcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaagct 402
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 121 catcatgaactccttcatcaacgacatcttcgagaagctcgccggcgaggccgccaagct 180
Query: 403 ggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgcct 462
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 181 cgcgcggtacaacaagaagcccaccatcacctcccgcgagatccaaacctccgtgcgcct 240
Query: 463 agtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaa 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaa 300
Query: 523 gttcaccagcaactgagcg 541
|||||||||||||||||||
Sbjct: 301 gttcaccagcaactgagcg 319
>gb|BF656458.1|BF656458 FM1_50_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 556
Score = 563 bits (284), Expect = e-159
Identities = 308/316 (97%)
Strand = Plus / Plus
Query: 226 cggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaagatctacat 285
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 cggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaaaatctacat 60
Query: 286 cttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccatgtccat 345
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 cttcaaggtgctgaagcaggtgcaccccgacatcggcatctcctccaaggccatgtccat 120
Query: 346 catgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaagctggc 405
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 121 catgaactccttcatcaacgacatcttcgagaagctcgccggcgaggccgccaagctcgc 180
Query: 406 gcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgcctagt 465
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 181 gcggtacaacaagaagcccaccatcacctcccgcgagatccaaacctccgtgcgcctcgt 240
Query: 466 cctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaagtt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaagtt 300
Query: 526 caccagcaactgagcg 541
||||||||||||||||
Sbjct: 301 caccagcaactgagcg 316
Score = 52.0 bits (26), Expect = 8e-005
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 650 gccggattgtaatggtcctcttagatttgatgtccctgttgtggaatatagttgtatc 707
|||||||||||||| |||||||||||| || ||| |||| ||||||||||||||||
Sbjct: 481 gccggattgtaatgcctctcttagatttgctgcccccgttg-ggaatatagttgtatc 537
>gb|BG240054.1|BG240054 OV1_17_D01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 388
Score = 551 bits (278), Expect = e-155
Identities = 317/330 (96%)
Strand = Plus / Plus
Query: 73 ccccgacatccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 58 ccccgacatccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagcc 117
Query: 133 ggcggccgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcg 192
||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 118 ggccgccgaggagaaggcggagaaggcgcccgcaggaaagaagcccaaggccgagaagcg 177
Query: 193 gctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggc 252
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 178 cctgcccgcctccaagtcctccggtaaggagggcggcgagaagaaggggaagaagaaggc 237
Query: 253 caagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccc 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 238 caagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccc 297
Query: 313 cgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 372
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 298 cgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaatgacatctt 357
Query: 373 tgagaagctggccggcgaggccgccaagct 402
|||||||| ||||||||||||||||||||
Sbjct: 358 cgagaagctcgccggcgaggccgccaagct 387
>gb|BF704815.1|BF704815 FM1_51_H04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 384
Score = 531 bits (268), Expect = e-149
Identities = 301/312 (96%)
Strand = Plus / Plus
Query: 79 catccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggc 138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 73 catccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagccggccgc 132
Query: 139 cgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcc 198
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 133 cgaggagaaggcggagaaggcgcccgcagggaagaagcccaaggccgagaagcgcctgcc 192
Query: 199 cgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 258
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cgcctccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 252
Query: 259 gagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacat 318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccccgacat 312
Query: 319 cggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaa 378
|||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 313 cggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacctcttcgagaa 372
Query: 379 gctggccggcga 390
||| ||||||||
Sbjct: 373 gctcgccggcga 384
>gb|BG558204.1|BG558204 RHIZ2_64_D04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 375
Score = 529 bits (267), Expect = e-148
Identities = 294/303 (97%)
Strand = Plus / Plus
Query: 79 catccccgacccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggc 138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 72 catccccgacccgatggcgcccaaggccgagaagaagccagcggagaagaagccggccgc 131
Query: 139 cgaggagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcc 198
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 132 cgaggagaaggcggagaaggcgcccgcagggaagaagcccaaggccgagaagcgcctgcc 191
Query: 199 cgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 258
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cgcctccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaa 251
Query: 259 gagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacat 318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gagcgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccccgacat 311
Query: 319 cggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaa 378
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 312 cggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaa 371
Query: 379 gct 381
|||
Sbjct: 372 gct 374
>gb|CW319235.1|CW319235 104_811_11474377_148_35884_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474377, DNA
sequence
Length = 704
Score = 527 bits (266), Expect = e-148
Identities = 390/430 (90%), Gaps = 6/430 (1%)
Strand = Plus / Plus
Query: 103 ggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcggagaagacgac 162
||||| ||||||||| |||||| || |||| ||| ||||| |||||||||||| | |
Sbjct: 171 ggcggcgaagaagcccgcggaggaggagcccgcgaccgag---aaggcggagaaggcccc 227
Query: 163 cgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaagga 222
|| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 228 ggcggggaagaagcccaaggccgagaagcggctccccgcgggcaagtccgccggcaagga 287
Query: 223 gggcggcgag---aagaaggggaagaagaaggccaagaagagcgtggagacctacaagat 279
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 288 gggcggcgagggcaagaaggggaagaagaaggcgaagaagtccgtggagacctacaagat 347
Query: 280 ctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccat 339
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 348 ctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcgtccaaggccat 407
Query: 340 gtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaa 399
||||||||||||||||||||||||||||||||| |||||||| || | |||| |||||||
Sbjct: 408 gtccatcatgaactccttcatcaacgacatcttcgagaagcttgcggccgagtccgccaa 467
Query: 400 gctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcg 459
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 468 gctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccagacctcggtgcg 527
Query: 460 cctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcac 519
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 528 cctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggctgtcac 587
Query: 520 caagttcacc 529
||||||||||
Sbjct: 588 caagttcacc 597
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 89 ccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||| |||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 142 ccgatggcacccaaggcggagaagaagccggcggcgaagaagcccgcgg 190
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gcggagaagaagccggcggc 138
||||||||||||||||||||
Sbjct: 157 gcggagaagaagccggcggc 176
>gb|CW417908.1|CW417908 fsbb001f121c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f121c05, DNA
sequence
Length = 812
Score = 527 bits (266), Expect = e-148
Identities = 390/430 (90%), Gaps = 6/430 (1%)
Strand = Plus / Plus
Query: 103 ggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcggagaagacgac 162
||||| ||||||||| |||||| || |||| ||| ||||| |||||||||||| | |
Sbjct: 121 ggcggcgaagaagcccgcggaggaggagcccgcgaccgag---aaggcggagaaggcccc 177
Query: 163 cgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaagga 222
|| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 178 ggcggggaagaagcccaaggccgagaagcggctccccgcgggcaagtccgccggcaagga 237
Query: 223 gggcggcgag---aagaaggggaagaagaaggccaagaagagcgtggagacctacaagat 279
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 238 gggcggcgagggcaagaaggggaagaagaaggcgaagaagtccgtggagacctacaagat 297
Query: 280 ctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccat 339
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 298 ctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcgtccaaggccat 357
Query: 340 gtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaa 399
||||||||||||||||||||||||||||||||| |||||||| || | |||| |||||||
Sbjct: 358 gtccatcatgaactccttcatcaacgacatcttcgagaagcttgcggccgagtccgccaa 417
Query: 400 gctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcg 459
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 418 gctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccagacctcggtgcg 477
Query: 460 cctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcac 519
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 478 cctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggctgtcac 537
Query: 520 caagttcacc 529
||||||||||
Sbjct: 538 caagttcacc 547
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 89 ccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||| |||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 92 ccgatggcacccaaggcggagaagaagccggcggcgaagaagcccgcgg 140
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gcggagaagaagccggcggc 138
||||||||||||||||||||
Sbjct: 107 gcggagaagaagccggcggc 126
>gb|BE355360.1|BE355360 DG1_114_A03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 527 bits (266), Expect = e-148
Identities = 390/430 (90%), Gaps = 6/430 (1%)
Strand = Plus / Plus
Query: 103 ggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcggagaagacgac 162
||||| ||||||||| |||||| || |||| ||| ||||| |||||||||||| | |
Sbjct: 91 ggcggcgaagaagcccgcggaggaggagcccgcgaccgag---aaggcggagaaggcccc 147
Query: 163 cgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaagga 222
|| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 148 ggcggggaagaagcccaaggccgagaagcggctccccgcgggcaagtccgccggcaagga 207
Query: 223 gggcggcgag---aagaaggggaagaagaaggccaagaagagcgtggagacctacaagat 279
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 208 gggcggcgagggcaagaaggggaagaagaaggcgaagaagtccgtggagacctacaagat 267
Query: 280 ctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccat 339
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 268 ctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcgtccaaggccat 327
Query: 340 gtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaa 399
||||||||||||||||||||||||||||||||| |||||||| || | |||| |||||||
Sbjct: 328 gtccatcatgaactccttcatcaacgacatcttcgagaagcttgcggccgagtccgccaa 387
Query: 400 gctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcg 459
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 388 gctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccagacctcggtgcg 447
Query: 460 cctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcac 519
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 448 cctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggctgtcac 507
Query: 520 caagttcacc 529
||||||||||
Sbjct: 508 caagttcacc 517
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 89 ccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||| |||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 62 ccgatggcacccaaggcggagaagaagccggcggcgaagaagcccgcgg 110
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gcggagaagaagccggcggc 138
||||||||||||||||||||
Sbjct: 77 gcggagaagaagccggcggc 96
>gb|AW680031.1|AW680031 WS1_34_A02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 558
Score = 523 bits (264), Expect = e-147
Identities = 359/390 (92%), Gaps = 3/390 (0%)
Strand = Plus / Plus
Query: 143 gagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcg 202
||||||||||||||| | | || ||||||||||||||||||||||||||||| ||||||
Sbjct: 30 gagaaggcggagaaggccccggcggggaagaagcccaaggccgagaagcggctccccgcg 89
Query: 203 tccaagtcctccggcaaggagggcggcgag---aagaaggggaagaagaaggccaagaag 259
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 90 ggcaagtccgccggcaaggagggcggcgagggcaagaaggggaagaagaaggcgaagaag 149
Query: 260 agcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatc 319
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 150 tccgtggagacctacaagatctacatcttcaaggtgctcaagcaggtgcacccggacatc 209
Query: 320 ggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaag 379
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 210 ggcatctcgtccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaag 269
Query: 380 ctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgc 439
|| || | |||| |||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 270 cttgcggccgagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgc 329
Query: 440 gagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctcc 499
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 330 gagatccagacctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctcc 389
Query: 500 gagggaaccaaggccgtcaccaagttcacc 529
||||| |||||||| |||||||||||||||
Sbjct: 390 gagggcaccaaggctgtcaccaagttcacc 419
>gb|BE355526.1|BE355526 DG1_114_A03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 523 bits (264), Expect = e-147
Identities = 359/390 (92%), Gaps = 3/390 (0%)
Strand = Plus / Plus
Query: 143 gagaaggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcg 202
||||||||||||||| | | || ||||||||||||||||||||||||||||| ||||||
Sbjct: 24 gagaaggcggagaaggccccggcggggaagaagcccaaggccgagaagcggctccccgcg 83
Query: 203 tccaagtcctccggcaaggagggcggcgag---aagaaggggaagaagaaggccaagaag 259
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 84 ggcaagtccgccggcaaggagggcggcgagggcaagaaggggaagaagaaggcgaagaag 143
Query: 260 agcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatc 319
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 144 tccgtggagacctacaagatctacatcttcaaggtgctcaagcaggtgcacccggacatc 203
Query: 320 ggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaag 379
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggcatctcgtccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaag 263
Query: 380 ctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgc 439
|| || | |||| |||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 264 cttgcggccgagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgc 323
Query: 440 gagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctcc 499
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gagatccagacctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctcc 383
Query: 500 gagggaaccaaggccgtcaccaagttcacc 529
||||| |||||||| |||||||||||||||
Sbjct: 384 gagggcaccaaggctgtcaccaagttcacc 413
>gb|CW182557.1|CW182557 104_598_11164141_116_36663_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164141, DNA
sequence
Length = 658
Score = 521 bits (263), Expect = e-146
Identities = 290/299 (96%)
Strand = Plus / Plus
Query: 243 agaagaaggccaagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagc 302
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 agaagaaggccaagaagagcgtggagacctacaaaatctacatcttcaaggtgctgaagc 60
Query: 303 aggtgcaccccgacatcggcatatcctccaaggccatgtccatcatgaactccttcatca 362
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtgcaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatca 120
Query: 363 acgacatctttgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagc 422
| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 121 atgacatcttcgagaagctcgccggcgaggccgccaagctcgcgcggtacaacaagaagc 180
Query: 423 ccaccatcacgtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcg 482
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 181 ccaccatcacctcccgcgagatccaaacctccgtgcgcctcgtcctccccggagagctcg 240
Query: 483 ccaagcacgccgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaagcacgccgtctccgagggaaccaaggccgtcaccaagttcaccagcaactgagcg 299
Score = 73.8 bits (37), Expect = 2e-011
Identities = 77/90 (85%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 618 tagctagcttgcctgctctataaatccggcgcgccggattgtaatggtcctcttagattt 677
|||||||||| |||||| |||||||| | |||||||||||||| |||||||||||
Sbjct: 428 tagctagcttccctgctttataaatc----gtgccggattgtaatgcctctcttagattt 483
Query: 678 gatgtccctgttgtggaatatagttgtatc 707
| || ||| |||||||||||||||||||||
Sbjct: 484 gctgcccccgttgtggaatatagttgtatc 513
>gb|BG410872.1|BG410872 EM1_27_A01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 537
Score = 515 bits (260), Expect = e-144
Identities = 340/366 (92%), Gaps = 3/366 (0%)
Strand = Plus / Plus
Query: 167 gggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaaggagggc 226
||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct: 20 gggaagaagcccaaggccgagaagcggctccccgcgggcaagtccgccggcaaggagggc 79
Query: 227 ggcgag---aagaaggggaagaagaaggccaagaagagcgtggagacctacaagatctac 283
|||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 80 ggcgagggcaagaaggggaagaagaaggcgaagaagtccgtggagacctacaagatctac 139
Query: 284 atcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccatgtcc 343
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 140 atcttcaaggtgctcaagcaggtgcacccggacatcggcatctcgtccaaggccatgtcc 199
Query: 344 atcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaagctg 403
||||||||||||||||||||||||||||| |||||||| || | |||| |||||||||||
Sbjct: 200 atcatgaactccttcatcaacgacatcttcgagaagcttgcggccgagtccgccaagctg 259
Query: 404 gcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgccta 463
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 260 gcgcgctacaacaagaagcccaccatcacctcccgcgagatccagacctcggtgcgcctc 319
Query: 464 gtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaag 523
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 320 gtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggctgtcaccaag 379
Query: 524 ttcacc 529
||||||
Sbjct: 380 ttcacc 385
>gb|CW129063.1|CW129063 104_511_11114353_148_34760_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114353, DNA
sequence
Length = 698
Score = 513 bits (259), Expect = e-144
Identities = 354/385 (91%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 148 ggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaa 207
|||||||||| | |||| ||||||||||||||||| ||||||||||| || ||| |||
Sbjct: 247 ggcggagaaggcccccgcggggaagaagcccaaggcggagaagcggctcccggcgggcaa 306
Query: 208 gtcctccg---gcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgt 264
||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 307 gtcgtccgccggcaaggagggcggcgagaagaaggggaggaagaagggcaagaagagcgt 366
Query: 265 ggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcat 324
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 367 ggagacctacaagatctacatcttcaaggtcctgaagcaggtgcacccggacatcggcat 426
Query: 325 atcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggc 384
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 427 ctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctggc 486
Query: 385 cggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagat 444
|| ||| |||||||||| || || |||||||||||||||||||| || |||||||||||
Sbjct: 487 cgcggagtccgccaagctcgcccgctacaacaagaagcccaccattacctcccgcgagat 546
Query: 445 ccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgaggg 504
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 547 ccagacctccgtccgcctcgtcctccccggggagctcgccaagcacgccgtctccgaggg 606
Query: 505 aaccaaggccgtcaccaagttcacc 529
||||||||||||||||||||||||
Sbjct: 607 taccaaggccgtcaccaagttcacc 631
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||||||||||| ||||||||||| ||| ||||||||| ||||
Sbjct: 171 cgatggcgcccaaggcagagaagaagccggcgtcgaagaagcccgcgg 218
>gb|CW188377.1|CW188377 104_608_11172997_148_36734_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172997, DNA
sequence
Length = 707
Score = 513 bits (259), Expect = e-144
Identities = 399/446 (89%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaag- 148
||||||| |||||||||||||||||||| |||| ||||||||| ||||| |||||| ||
Sbjct: 102 cgatggctcccaaggcggagaagaagccggcggcgaagaagcccgcggcggaggaggagc 161
Query: 149 -----gcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgt 203
|| |||||| | | || ||||||||||||||||| |||||||| || || |||
Sbjct: 162 ccgcggccgagaaggccccggcggggaagaagcccaaggcggagaagcgcctcccggcgg 221
Query: 204 ccaagtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcg 263
|||||| |||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct: 222 gcaagtcggccggcaaggaaggcggcgacaagaaggggaagaagaaggccaagaagtcgg 281
Query: 264 tggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggca 323
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 282 tggagacctacaagatctacatcttcaaggtgctcaagcaggtgcaccctgacatcggca 341
Query: 324 tatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctgg 383
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 342 tctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcg 401
Query: 384 ccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgaga 443
||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||| | ||||
Sbjct: 402 ccgccgaggccgccaagctcgcgcgctacaacaagaagcccaccatcacctccagggaga 461
Query: 444 tccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagg 503
||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 462 tccagacgtcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagg 521
Query: 504 gaaccaaggccgtcaccaagttcacc 529
| ||||||||||||||||||||||||
Sbjct: 522 gcaccaaggccgtcaccaagttcacc 547
>gb|CW191309.1|CW191309 104_613_11178426_116_36942_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178426, DNA
sequence
Length = 724
Score = 509 bits (257), Expect = e-142
Identities = 397/443 (89%), Gaps = 3/443 (0%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||||||||||||||| |||| ||||||||| |||| |||||| |
Sbjct: 161 cgatggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccg 220
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| | | || ||||||||||||||||| |||||||| || |||||| ||
Sbjct: 221 cggccgagaaggccccggcggggaagaagcccaaggcggagaagcgcctccccgcgggca 280
Query: 207 agtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtgg 266
|||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct: 281 agtctgccggcaaggagggcggcgacaagaagggcaagaagaaggccaagaagtcggtgg 340
Query: 267 agacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatat 326
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 341 agacctacaagatctacatcttcaaggtgctcaagcaggtgcaccccgacatcggcatct 400
Query: 327 cctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccg 386
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 401 cctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccg 460
Query: 387 gcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatcc 446
|||||||||||||||| || || ||||||||||||||||||||||| ||| | |||||||
Sbjct: 461 gcgaggccgccaagctcgcccgctacaacaagaagcccaccatcacctccagggagatcc 520
Query: 447 agacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaa 506
|||| || |||||||| |||||||| || |||||||||||||||||||| |||||||| |
Sbjct: 521 agacgtcggtgcgcctcgtcctcccaggcgagctcgccaagcacgccgtgtccgagggca 580
Query: 507 ccaaggccgtcaccaagttcacc 529
|||||||||| ||||||||||||
Sbjct: 581 ccaaggccgttaccaagttcacc 603
>gb|CD213713.1|CD213713 HS1_52_G12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_G12_A012 5', mRNA sequence
Length = 729
Score = 505 bits (255), Expect = e-141
Identities = 402/449 (89%), Gaps = 9/449 (2%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaa-- 147
|||||||||||||||| ||||||||||| |||| |||||||| ||||| ||||||
Sbjct: 81 cgatggcgcccaaggccgagaagaagcccgcggcgaagaagctggcggaggaggagcccg 140
Query: 148 -ggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||||||||||||| | || ||||||||||||||||| |||||||| || ||||| ||
Sbjct: 141 cggcggagaagacgccggccgggaagaagcccaaggcggagaagcgtctccccgctggca 200
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 201 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 260
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 320
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 380
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcg 440
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||| |
Sbjct: 441 agatccagacctccgtccgcctcgtcctccccggggggctcgccaagcacgccgtctctg 500
Query: 501 agggaaccaaggccgtcaccaagttcacc 529
|||| ||||||||||||||||||||||||
Sbjct: 501 agggcaccaaggccgtcaccaagttcacc 529
>gb|BG102543.1|BG102543 RHIZ2_34_D04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 495
Score = 500 bits (252), Expect = e-139
Identities = 338/366 (92%), Gaps = 3/366 (0%)
Strand = Plus / Plus
Query: 167 gggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccg---gcaaggag 223
||||||||||||||||| ||||||||||| || ||| |||||| |||| ||||||||
Sbjct: 2 gggaagaagcccaaggcggagaagcggctcccggcgggcaagtcgtccgtcggcaaggag 61
Query: 224 ggcggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaagatctac 283
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 62 ggcggcgagaagaaggggaggaagaaggggaagaagagcgtggagacctacaagatctac 121
Query: 284 atcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccatgtcc 343
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 122 atcttcaaggtcctgaagcaggtgcacccggacatcggcatctcctccaaggccatgtcc 181
Query: 344 atcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaagctg 403
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 182 atcatgaactccttcatcaacgacatcttcgagaagctggccgcggagtccgccaagctc 241
Query: 404 gcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgccta 463
|| || |||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 242 gcccgctacaacaagaagcccaccattacctcccgcgagatccagacctccgtccgcctc 301
Query: 464 gtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaag 523
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 gtcctccccggggagctcgccaagcacgccgtctccgagggtaccaaggccgtcaccaag 361
Query: 524 ttcacc 529
||||||
Sbjct: 362 ttcacc 367
>gb|BE917707.1|BE917707 OV1_6_B04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 554
Score = 496 bits (250), Expect = e-138
Identities = 386/430 (89%), Gaps = 6/430 (1%)
Strand = Plus / Plus
Query: 103 ggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcggagaagacgac 162
||||| ||||||||| |||||| || |||| ||||||||| |||||||||||||| |
Sbjct: 114 ggcggcgaagaagcccgcggaggaggagcccgcggccgag---aaggcggagaagacccc 170
Query: 163 cgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcct---ccggcaa 219
|| ||||||||||| ||||| |||||||| || |||||| ||||||| |||||||
Sbjct: 171 ggcggggaagaagccgaaggcggagaagcgcctccccgcgggcaagtccagcgccggcaa 230
Query: 220 ggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaagat 279
||| |||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggacggcgagggcaagaagggcaagaagaaggccaagaagagcgtggagacctacaagat 290
Query: 280 ctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccat 339
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 291 ctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcctccaaggccat 350
Query: 340 gtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaa 399
||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||
Sbjct: 351 gtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgagtccgccaa 410
Query: 400 gctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcg 459
||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 411 gctcgcccgctacaacaagaagcccaccatcacgtcccgagagatccagacttccgtccg 470
Query: 460 cctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcac 519
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 471 cctcgtcctccccggggagctcgccaagcacgccgtctccgagggcaccaaggccgtcac 530
Query: 520 caagttcacc 529
||||||||||
Sbjct: 531 caagttcacc 540
Score = 71.9 bits (36), Expect = 9e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 86 cgatggcgcccaaggcggagaagaagccggcggcgaagaagcccgcgg 133
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gcggagaagaagccggcggc 138
||||||||||||||||||||
Sbjct: 100 gcggagaagaagccggcggc 119
>gb|CW297850.1|CW297850 104_780_11462260_116_35647_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462260, DNA
sequence
Length = 662
Score = 492 bits (248), Expect = e-137
Identities = 331/358 (92%), Gaps = 3/358 (0%)
Strand = Plus / Plus
Query: 175 gcccaaggccgagaagcggctgcccgcgtccaagtcctccg---gcaaggagggcggcga 231
||||||||| ||||||||||| || ||| |||||| |||| ||||||||||||||||
Sbjct: 1 gcccaaggcggagaagcggctcccggcgggcaagtcgtccgccggcaaggagggcggcga 60
Query: 232 gaagaaggggaagaagaaggccaagaagagcgtggagacctacaagatctacatcttcaa 291
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagaaggggaggaagaagggcaagaagagcgtggagacctacaagatctacatcttcaa 120
Query: 292 ggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccatgtccatcatgaa 351
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 121 ggtcctgaagcaggtgcacccggacatcggcatctcctccaaggccatgtccatcatgaa 180
Query: 352 ctccttcatcaacgacatctttgagaagctggccggcgaggccgccaagctggcgcggta 411
||||||||||||||||||||| ||||||||||||| ||| |||||||||| || || ||
Sbjct: 181 ctccttcatcaacgacatcttcgagaagctggccgcggagtccgccaagctcgcccgcta 240
Query: 412 caacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgcctagtcctccc 471
|||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 241 caacaagaagcccaccattacctcccgcgagatccagacctccgtccgcctcgtcctccc 300
Query: 472 cggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaagttcacc 529
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 301 cggggagctcgccaagcacgccgtctccgagggtaccaaggccgtcaccaagttcacc 358
>gb|BG411209.1|BG411209 EM1_27_A01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 490 bits (247), Expect = e-136
Identities = 365/403 (90%), Gaps = 6/403 (1%)
Strand = Plus / Plus
Query: 103 ggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcggagaagacgac 162
||||| ||||||||| |||||| || |||| ||| ||||| |||||||||||| | |
Sbjct: 99 ggcggcgaagaagcccgcggaggaggagcccgcgaccgag---aaggcggagaaggcccc 155
Query: 163 cgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaagga 222
|| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 156 ggcggggaagaagcccaaggccgagaagcggctccccgcgggcaagtccgccggcaagga 215
Query: 223 gggcggcgag---aagaaggggaagaagaaggccaagaagagcgtggagacctacaagat 279
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 216 gggcggcgagggcaagaaggggaagaagaaggcgaagaagtccgtggagacctacaagat 275
Query: 280 ctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccat 339
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 276 ctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcgtccaaggccat 335
Query: 340 gtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaa 399
||||||||||||||||||||||||||||||||| |||||||| || | |||| |||||||
Sbjct: 336 gtccatcatgaactccttcatcaacgacatcttcgagaagcttgcggccgagtccgccaa 395
Query: 400 gctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcg 459
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 396 gctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccagacctcggtgcg 455
Query: 460 cctagtcctccccggagagctcgccaagcacgccgtctccgag 502
||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 456 cctcgtcctccccggcgagctcgccaagcacgccgtctccgag 498
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 89 ccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||| |||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 70 ccgatggcacccaaggcggagaagaagccggcggcgaagaagcccgcgg 118
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gcggagaagaagccggcggc 138
||||||||||||||||||||
Sbjct: 85 gcggagaagaagccggcggc 104
>gb|CW128767.1|CW128767 104_510_11114194_148_34755_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114194, DNA
sequence
Length = 652
Score = 488 bits (246), Expect = e-136
Identities = 348/382 (91%)
Strand = Plus / Minus
Query: 148 ggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaa 207
|||||||||| | |||| ||||||||||||||||| |||||||| || || ||| |||
Sbjct: 582 ggcggagaagccccccgcggggaagaagcccaaggcggagaagcgtctcccggcgggcaa 523
Query: 208 gtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtgga 267
|||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 522 gtccgccagcaaggagggcggcgagaagaggggtcggaagaagggcaagaagagcgtgga 463
Query: 268 gacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatc 327
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 462 gacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggcatctc 403
Query: 328 ctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccgg 387
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 402 ctccaaggccatgtccatcatgaactcgttcatcaacgacatcttcgagaagctcgccgg 343
Query: 388 cgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatcca 447
||||||||||||||| || || ||||||||||||||||||||||| || || ||||||||
Sbjct: 342 cgaggccgccaagctcgcccgctacaacaagaagcccaccatcacttctcgggagatcca 283
Query: 448 gacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaac 507
||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 282 gacctccgtccgcctcgtcctccccggggagctcgccaagcacgccgtctctgagggcac 223
Query: 508 caaggccgtcaccaagttcacc 529
||||||||||||||||||||||
Sbjct: 222 caaggccgtcaccaagttcacc 201
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 86 gacccgatggcgcccaaggcggagaaga 113
||||||||||||||||||||||||||||
Sbjct: 652 gacccgatggcgcccaaggcggagaaga 625
>gb|BG240440.1|BG240440 OV1_30_A12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 488 bits (246), Expect = e-136
Identities = 348/382 (91%)
Strand = Plus / Plus
Query: 148 ggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaa 207
|||||||||| | |||| ||||||||||||||||| |||||||| || || ||| |||
Sbjct: 142 ggcggagaagccccccgcggggaagaagcccaaggcggagaagcgtctcccggcgggcaa 201
Query: 208 gtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtgga 267
|||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 202 gtccgccagcaaggagggcggcgagaagaggggtcggaagaagggcaagaagagcgtgga 261
Query: 268 gacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatc 327
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 262 gacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggcatctc 321
Query: 328 ctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccgg 387
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 322 ctccaaggccatgtccatcatgaactcgttcatcaacgacatcttcgagaagctcgccgg 381
Query: 388 cgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatcca 447
||||||||||||||| || || ||||||||||||||||||||||| || || ||||||||
Sbjct: 382 cgaggccgccaagctcgcccgctacaacaagaagcccaccatcacttctcgggagatcca 441
Query: 448 gacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaac 507
||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 442 gacctccgtccgcctcgtcctccccggggagctcgccaagcacgccgtctctgagggcac 501
Query: 508 caaggccgtcaccaagttcacc 529
||||||||||||||||||||||
Sbjct: 502 caaggccgtcaccaagttcacc 523
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 86 gacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
|||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 71 gacccgatggcgcccaaggcggagaagaagccggcagcgaagaagcc 117
>gb|AW745446.1|AW745446 WS1_34_A02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 486 bits (245), Expect = e-135
Identities = 363/401 (90%), Gaps = 6/401 (1%)
Strand = Plus / Plus
Query: 103 ggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcggagaagacgac 162
||||| ||||||||| |||||| || |||| ||| ||||| |||||||||||| | |
Sbjct: 101 ggcggcgaagaagcccgcggaggaggagcccgcgaccgag---aaggcggagaaggcccc 157
Query: 163 cgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaagga 222
|| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 158 ggcggggaagaagcccaaggccgagaagcggctccccgcgggcaagtccgccggcaagga 217
Query: 223 gggcggcgag---aagaaggggaagaagaaggccaagaagagcgtggagacctacaagat 279
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 218 gggcggcgagggcaagaaggggaagaagaaggcgaagaagtccgtggagacctacaagat 277
Query: 280 ctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccat 339
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 278 ctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcgtccaaggccat 337
Query: 340 gtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaa 399
||||||||||||||||||||||||||||||||| |||||||| || | |||| |||||||
Sbjct: 338 gtccatcatgaactccttcatcaacgacatcttcgagaagcttgcggccgagtccgccaa 397
Query: 400 gctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcg 459
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 398 gctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccagacctcggtgcg 457
Query: 460 cctagtcctccccggagagctcgccaagcacgccgtctccg 500
||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 458 cctcgtcctccccggcgagctcgccaagcacgccgtctccg 498
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 89 ccgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||| |||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 72 ccgatggcacccaaggcggagaagaagccggcggcgaagaagcccgcgg 120
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gcggagaagaagccggcggc 138
||||||||||||||||||||
Sbjct: 87 gcggagaagaagccggcggc 106
>gb|BG049237.1|BG049237 OV1_17_D01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 462
Score = 484 bits (244), Expect = e-135
Identities = 271/280 (96%)
Strand = Plus / Plus
Query: 262 cgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcgg 321
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtggagacctacaaaatctacatcttcaaggtgctgaagcaggtgcaccccgacatcgg 60
Query: 322 catatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagct 381
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 61 catctcctccaaggccatgtccatcatgaactccttcatcaatgacatcttcgagaagct 120
Query: 382 ggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcga 441
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 cgccggcgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcga 180
Query: 442 gatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccga 501
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatccaaacctccgtgcgcctcgtcctccccggagagctcgccaagcacgccgtctccga 240
Query: 502 gggaaccaaggccgtcaccaagttcaccagcaactgagcg 541
||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggaaccaaggccgtcaccaagttcaccagcaactgagcg 280
>gb|BZ341857.1|BZ341857 ic79b05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic79b05 5', DNA sequence
Length = 685
Score = 482 bits (243), Expect = e-134
Identities = 399/449 (88%), Gaps = 9/449 (2%)
Strand = Plus / Minus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| |
Sbjct: 538 cgatggcgcccaaggccgagaagaaacccgcggcgaagaagctggcggaggaggagcccg 479
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| || | || |||||||||||||| || |||||||| |||||||| ||
Sbjct: 478 cggccgagaaggcgccggccgggaagaagcccaaagcggagaagcgtctgcccgctggca 419
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 418 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 359
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 358 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 299
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 298 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 239
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 238 tcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcg 179
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 178 agatccagacctccgtccgcctcgtcctccccggggagctcgcgaagcacgccgtctctg 119
Query: 501 agggaaccaaggccgtcaccaagttcacc 529
|||| ||||||||||||||||||||||||
Sbjct: 118 agggcaccaaggccgtcaccaagttcacc 90
>gb|CW155043.1|CW155043 104_557_11145924_116_36362_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145924, DNA
sequence
Length = 743
Score = 482 bits (243), Expect = e-134
Identities = 399/449 (88%), Gaps = 9/449 (2%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| |
Sbjct: 95 cgatggcgcccaaggccgagaagaaacccgcggcgaagaagctggcggaggaggagcccg 154
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| || | || |||||||||||||| || |||||||| |||||||| ||
Sbjct: 155 cggccgagaaggcgccggccgggaagaagcccaaagcggagaagcgtctgcccgctggca 214
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 215 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 274
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 275 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 334
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 335 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 394
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 395 tcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcg 454
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 455 agatccagacctccgtccgcctcgtcctccccggggagctcgcgaagcacgccgtctctg 514
Query: 501 agggaaccaaggccgtcaccaagttcacc 529
|||| ||||||||||||||||||||||||
Sbjct: 515 agggcaccaaggccgtcaccaagttcacc 543
>gb|CW183462.1|CW183462 104_599_11164629_148_36672_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164629, DNA
sequence
Length = 693
Score = 482 bits (243), Expect = e-134
Identities = 392/441 (88%), Gaps = 3/441 (0%)
Strand = Plus / Plus
Query: 92 atggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcg 151
|||||||||||||||||||||||||| |||| ||||||||| |||| |||||| |||
Sbjct: 59 atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcg 118
Query: 152 g---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaag 208
| ||||| || | || ||||||||||||||||| |||||||| || || ||| ||||
Sbjct: 119 gccgagaaggcgccggcggggaagaagcccaaggcggagaagcgcctcccggcgggcaag 178
Query: 209 tcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtggag 268
|| ||||||||||||| ||||| |||||||| ||||||||||| |||||| ||||||
Sbjct: 179 tcggccggcaaggaggggggcgacaagaagggcaagaagaaggctaagaagtcggtggag 238
Query: 269 acctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcc 328
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 239 acctacaagatctacatcttcaaggtgctgaagcaggtccaccccgacaccggcatctcc 298
Query: 329 tccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccggc 388
||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 299 tccaaggccatgtccatcatgaattccttcatcaacgatatcttcgagaagctcgccggc 358
Query: 389 gaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccag 448
|| ||||||||||| ||||| |||||||| |||||||||||||| ||| | |||||||||
Sbjct: 359 gaagccgccaagctcgcgcgctacaacaaaaagcccaccatcacctccagggagatccag 418
Query: 449 acctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaacc 508
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 419 acctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcacc 478
Query: 509 aaggccgtcaccaagttcacc 529
|||||||| ||||||||||||
Sbjct: 479 aaggccgttaccaagttcacc 499
>gb|AI724175.1|AI724175 RHIZ1_8_A04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 509
Score = 482 bits (243), Expect = e-134
Identities = 333/363 (91%)
Strand = Plus / Plus
Query: 167 gggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaaggagggc 226
||||||||||||||||| |||||||| || || ||| |||||| ||||||||||||||
Sbjct: 20 gggaagaagcccaaggcggagaagcgcctcccggcgggcaagtcggccggcaaggagggc 79
Query: 227 ggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaagatctacatc 286
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 80 ggcgacaagaagggcaagaagaaggccaagaagtcggtggagacctacaagatctacatc 139
Query: 287 ttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccatgtccatc 346
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 140 ttcaaggtgctgaagcaggtgcaccccgacatcggcatctcctccaaggccatgtccatc 199
Query: 347 atgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaagctggcg 406
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 200 atgaactccttcatcaacgacatcttcgagaagctcgccggcgaggccgccaagctcgcc 259
Query: 407 cggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgcctagtc 466
|| ||||||||||||||||||||||| ||| | ||||||||||| || |||||||| |||
Sbjct: 260 cgctacaacaagaagcccaccatcacctccagggagatccagacgtcggtgcgcctcgtc 319
Query: 467 ctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaagttc 526
||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 320 ctcccaggcgagctcgccaagcacgccgtgtccgagggcaccaaggccgttaccaagttc 379
Query: 527 acc 529
|||
Sbjct: 380 acc 382
>gb|CD464058.1|CD464058 ETH1_48_H05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_H05_A002 3', mRNA sequence
Length = 746
Score = 482 bits (243), Expect = e-134
Identities = 392/441 (88%), Gaps = 3/441 (0%)
Strand = Plus / Plus
Query: 92 atggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcg 151
|||||||||||||||||||||||||| |||| ||||||||| |||| |||||| |||
Sbjct: 19 atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcg 78
Query: 152 g---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaag 208
| ||||| || | || ||||||||||||||||| |||||||| || || ||| ||||
Sbjct: 79 gccgagaaggcgccggcggggaagaagcccaaggcggagaagcgcctcccggcgggcaag 138
Query: 209 tcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtggag 268
|| ||||||||||||| ||||| |||||||| ||||||||||| |||||| ||||||
Sbjct: 139 tcggccggcaaggaggggggcgacaagaagggcaagaagaaggctaagaagtcggtggag 198
Query: 269 acctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcc 328
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 199 acctacaagatctacatcttcaaggtgctgaagcaggtccaccccgacaccggcatctcc 258
Query: 329 tccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccggc 388
||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 259 tccaaggccatgtccatcatgaattccttcatcaacgatatcttcgagaagctcgccggc 318
Query: 389 gaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccag 448
|| ||||||||||| ||||| |||||||| |||||||||||||| ||| | |||||||||
Sbjct: 319 gaagccgccaagctcgcgcgctacaacaaaaagcccaccatcacctccagggagatccag 378
Query: 449 acctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaacc 508
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 379 acctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcacc 438
Query: 509 aaggccgtcaccaagttcacc 529
|||||||| ||||||||||||
Sbjct: 439 aaggccgttaccaagttcacc 459
>gb|CX606979.1|CX606979 ANR1_6_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_B05_A002 3', mRNA sequence
Length = 665
Score = 482 bits (243), Expect = e-134
Identities = 399/449 (88%), Gaps = 9/449 (2%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| |
Sbjct: 52 cgatggcgcccaaggccgagaagaaacccgcggcgaagaagctggcggaggaggagcccg 111
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| || | || |||||||||||||| || |||||||| |||||||| ||
Sbjct: 112 cggccgagaaggcgccggccgggaagaagcccaaagcggagaagcgtctgcccgctggca 171
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 172 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 231
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 232 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 291
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 292 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 351
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 352 tcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcg 411
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 412 agatccagacctccgtccgcctcgtcctccccggggagctcgcgaagcacgccgtctctg 471
Query: 501 agggaaccaaggccgtcaccaagttcacc 529
|||| ||||||||||||||||||||||||
Sbjct: 472 agggcaccaaggccgtcaccaagttcacc 500
>gb|CX607063.1|CX607063 ANR1_6_B05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_B05_A002 5', mRNA sequence
Length = 702
Score = 482 bits (243), Expect = e-134
Identities = 399/449 (88%), Gaps = 9/449 (2%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| |
Sbjct: 71 cgatggcgcccaaggccgagaagaaacccgcggcgaagaagctggcggaggaggagcccg 130
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| || | || |||||||||||||| || |||||||| |||||||| ||
Sbjct: 131 cggccgagaaggcgccggccgggaagaagcccaaagcggagaagcgtctgcccgctggca 190
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 191 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 250
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 251 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 310
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 311 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 370
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 371 tcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcg 430
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 431 agatccagacctccgtccgcctcgtcctccccggggagctcgcgaagcacgccgtctctg 490
Query: 501 agggaaccaaggccgtcaccaagttcacc 529
|||| ||||||||||||||||||||||||
Sbjct: 491 agggcaccaaggccgtcaccaagttcacc 519
>gb|CX610420.1|CX610420 ANR1_18_D02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_18_D02_A002 5', mRNA sequence
Length = 711
Score = 482 bits (243), Expect = e-134
Identities = 399/449 (88%), Gaps = 9/449 (2%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| |
Sbjct: 70 cgatggcgcccaaggccgagaagaaacccgcggcgaagaagctggcggaggaggagcccg 129
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| || | || |||||||||||||| || |||||||| |||||||| ||
Sbjct: 130 cggccgagaaggcgccggccgggaagaagcccaaagcggagaagcgtctgcccgctggca 189
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 190 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 249
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 250 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 309
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 310 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 369
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 370 tcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcg 429
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 430 agatccagacctccgtccgcctcgtcctccccggggagctcgcgaagcacgccgtctctg 489
Query: 501 agggaaccaaggccgtcaccaagttcacc 529
|||| ||||||||||||||||||||||||
Sbjct: 490 agggcaccaaggccgtcaccaagttcacc 518
>gb|BG488106.1|BG488106 RHIZ2_63_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 514
Score = 480 bits (242), Expect = e-133
Identities = 347/382 (90%)
Strand = Plus / Plus
Query: 148 ggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaa 207
|||||||||| | |||| ||||||||||||||||| |||||||| || || ||| |||
Sbjct: 20 ggcggagaaggcccccgcggggaagaagcccaaggcggagaagcgtctcccggcgggcaa 79
Query: 208 gtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtgga 267
|||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 80 gtccgccagcaaggagggcggcgagaagaggggtcggaagaagggcaagaagagcgtgga 139
Query: 268 gacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatc 327
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 140 gacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggtatctc 199
Query: 328 ctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccgg 387
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 200 ctccaaggccatgtccatcatgaactccttcatcaatgacatcttcgagaagctcgccgg 259
Query: 388 cgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatcca 447
||||||||||||||| || || ||||||||||||||||||||||| || || ||||||||
Sbjct: 260 cgaggccgccaagctcgcccgctacaacaagaagcccaccatcacttctcgggagatcca 319
Query: 448 gacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaac 507
||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 320 gacctccgtccgcctcgtcctccccggggagctcgccaagcacgccgtctctgagggcac 379
Query: 508 caaggccgtcaccaagttcacc 529
||||||||||||||||||||||
Sbjct: 380 caaggccgtcaccaagttcacc 401
>gb|BG488416.1|BG488416 RHIZ2_63_D10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 556
Score = 480 bits (242), Expect = e-133
Identities = 347/382 (90%)
Strand = Plus / Plus
Query: 148 ggcggagaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaa 207
|||||||||| | |||| ||||||||||||||||| |||||||| || || ||| |||
Sbjct: 148 ggcggagaaggcccccgcggggaagaagcccaaggcggagaagcgtctcccggcgggcaa 207
Query: 208 gtcctccggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtgga 267
|||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 208 gtccgccagcaaggagggcggcgagaagaggggtcggaagaagggcaagaagagcgtgga 267
Query: 268 gacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatc 327
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct: 268 gacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggtatctc 327
Query: 328 ctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccgg 387
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 328 ctccaaggccatgtccatcatgaactccttcatcaatgacatcttcgagaagctcgccgg 387
Query: 388 cgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatcca 447
||||||||||||||| || || ||||||||||||||||||||||| || || ||||||||
Sbjct: 388 cgaggccgccaagctcgcccgctacaacaagaagcccaccatcacttctcgggagatcca 447
Query: 448 gacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaac 507
||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 448 gacctccgtccgcctcgtcctccccggggagctcgccaagcacgccgtctctgagggcac 507
Query: 508 caaggccgtcaccaagttcacc 529
||||||||||||||||||||||
Sbjct: 508 caaggccgtcaccaagttcacc 529
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 86 gacccgatggcgcccaaggcggagaagaagccagcggagaagaagcc 132
|||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 77 gacccgatggcgcccaaggcggagaagaagccggcagcgaagaagcc 123
>gb|BE917630.1|BE917630 OV1_6_B04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 493
Score = 476 bits (240), Expect = e-132
Identities = 387/432 (89%), Gaps = 8/432 (1%)
Strand = Plus / Plus
Query: 103 ggcggagaagaagccagcggagaagaagccggcggccgaggagaaggcggagaagacgac 162
||||| ||||||||| |||||| || |||| ||||||||| |||||||||||||| |
Sbjct: 38 ggcggcgaagaagcccgcggaggaggagcccgcggccgag---aaggcggagaagacccc 94
Query: 163 cgcagggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcct---ccggcaa 219
|| ||||||||||| ||||| |||||||| || |||||| ||||||| |||||||
Sbjct: 95 ggcggggaagaagccgaaggcggagaagcgcctccccgcgggcaagtccagcgccggcaa 154
Query: 220 ggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtggagacctacaagat 279
||| |||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggacggcgagggcaagaagggcaagaagaaggccaagaagagcgtggagacctacaagat 214
Query: 280 ctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccat 339
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 215 ctacatcttcaaggtgctcaagcaggtgcacccggacatcggcatctcctccaaggccat 274
Query: 340 gtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaa 399
||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||
Sbjct: 275 gtccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgagtccgccaa 334
Query: 400 gctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcg 459
||| || || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 335 gctcgcccgctacaacaagaagcccaccatcacgtcccgagagatccagacttccgtccg 394
Query: 460 cctagtcctccccggagagctcgccaagcacgccgtctc-cgaggg-aaccaaggccgtc 517
||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 395 cctcgtcctccccggggagctcgccaagcacgccgtctcacgagggcaaccaaggccgtc 454
Query: 518 accaagttcacc 529
||||||||||||
Sbjct: 455 accaagttcacc 466
Score = 71.9 bits (36), Expect = 9e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcgg 137
|||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 10 cgatggcgcccaaggcggagaagaagccggcggcgaagaagcccgcgg 57
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 119 gcggagaagaagccggcggc 138
||||||||||||||||||||
Sbjct: 24 gcggagaagaagccggcggc 43
>gb|BG052252.1|BG052252 RHIZ2_12_B05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 464
Score = 476 bits (240), Expect = e-132
Identities = 297/316 (93%)
Strand = Plus / Plus
Query: 214 cggcaaggagggcggcgagaagaaggggaagaagaaggccaagaagagcgtggagaccta 273
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 36 cggcaaggagggcggcgagaagaaggggaggaagaaggggaagaagagcgtggagaccta 95
Query: 274 caagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaa 333
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 96 caagatctacatcttcaaggtcctgaagcaggtgcacccggacatcggcatctcctccaa 155
Query: 334 ggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggc 393
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 156 ggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctggccgcggagtc 215
Query: 394 cgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctc 453
||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 216 cgccaagctcgcccgctacaacaagaagcccaccattacctcccgcgagatccagacctc 275
Query: 454 cgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggc 513
||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 cgtccgcctcgtcctccccggggagctcgccaagcacgccgtctccgagggtaccaaggc 335
Query: 514 cgtcaccaagttcacc 529
||||||||||||||||
Sbjct: 336 cgtcaccaagttcacc 351
>gb|CW410848.1|CW410848 fsbb001f105m09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105m09, DNA
sequence
Length = 598
Score = 474 bits (239), Expect = e-132
Identities = 398/449 (88%), Gaps = 9/449 (2%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| |
Sbjct: 70 cgatggcgcccaaggccgagaagaaacccgcggcgaagaagctggcggaggaggagcccg 129
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| || | || |||||||||||||| || |||||||| |||||||| ||
Sbjct: 130 cggccgagaaggcgccggccgggaagaagcccaaagcggagaagcgtctgcccgctggca 189
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 190 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 249
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 250 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 309
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 310 gcatctcctccaagggcatgtccatcatgaactccttcatcaacgacatcttcgagaagc 369
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 370 tcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgcg 429
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 430 agatccagacctccgtccgcctcgtcctccccggggagctcgcgaagcacgccgtctctg 489
Query: 501 agggaaccaaggccgtcaccaagttcacc 529
|||| ||||||||||||||||||||||||
Sbjct: 490 agggcaccaaggccgtcaccaagttcacc 518
>gb|CD462726.1|CD462726 ETH1_39_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_39_B03_A002 5', mRNA sequence
Length = 637
Score = 468 bits (236), Expect = e-130
Identities = 399/450 (88%), Gaps = 10/450 (2%)
Strand = Plus / Plus
Query: 90 cgatggcgcccaaggcggagaagaagccagcggagaagaagccggcggccgaggagaagg 149
|||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| |
Sbjct: 92 cgatggcgcccaaggccgagaagaaacccgcggcgaagaagctggcggaggaggagcccg 151
Query: 150 cgg---agaagacgaccgcagggaagaagcccaaggccgagaagcggctgcccgcgtcca 206
||| ||||| || | || |||||||||||||| || |||||||| |||||||| ||
Sbjct: 152 cggccgagaaggcgccggccgggaagaagcccaaagcggagaagcgtctgcccgctggca 211
Query: 207 agtcctccggcaaggagggc---ggcgag---aagaaggggaagaagaaggccaagaaga 260
||||| |||||||||||||| |||||| ||| ||| |||||||| ||||||||
Sbjct: 212 agtccgccggcaaggagggcggcggcgagggcaagcggggccggaagaagggcaagaaga 271
Query: 261 -gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatc 319
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 272 agcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatc 331
Query: 320 ggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaag 379
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 332 ggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaag 391
Query: 380 ctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgc 439
|| |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 392 ctcgccgccgaggccgccaagctcgcgcggtacaacaagaagcccaccatcacctcccgc 451
Query: 440 gagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctcc 499
||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 452 gagatccagacctccgtccgcctcgtcctccccggggagctcgcgaagcacgccgtctct 511
Query: 500 gagggaaccaaggccgtcaccaagttcacc 529
||||| ||||||||||||||||||||||||
Sbjct: 512 gagggcaccaaggccgtcaccaagttcacc 541
>gb|CF071274.1|CF071274 FE1_16_D02.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_D02_A002 5', mRNA sequence
Length = 551
Score = 468 bits (236), Expect = e-130
Identities = 320/348 (91%)
Strand = Plus / Minus
Query: 185 gagaagcggctgcccgcgtccaagtcctccggcaaggagggcggcgagaagaaggggaag 244
||||||||||| || || ||||||| | |||||||| ||||||||||||||||| |||
Sbjct: 551 gagaagcggctcccgtcgggcaagtccgcgggcaaggaaggcggcgagaagaagggaaag 492
Query: 245 aagaaggccaagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcag 304
|||||||| |||||| |||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 491 aagaaggcgaagaagtcggtggagacgtacaagatctacatcttcaaggtgccgaagcag 432
Query: 305 gtgcaccccgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaac 364
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtgcacccggacatcggcatctcgtccaaggccatgtccatcatgaactccttcatcaac 372
Query: 365 gacatctttgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagccc 424
|||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 371 gacatcttcgagaagctggcggcggaggcggccaagctggcgcggtacaacaagaagccc 312
Query: 425 accatcacgtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgcc 484
|||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 311 accatcacgtcccgggagatccagacctccgtccgcctcgtcctccccggtgagctcgcc 252
Query: 485 aagcacgccgtctccgagggaaccaaggccgtcaccaagttcaccagc 532
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 251 aagcacgccgtctccgagggcaccaaggccgtcaccaagttcaccagc 204
>gb|CL152064.1|CL152064 104_335_10779694_116_31364_094 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779694, DNA
sequence
Length = 690
Score = 462 bits (233), Expect = e-128
Identities = 336/369 (91%), Gaps = 6/369 (1%)
Strand = Plus / Minus
Query: 167 gggaagaagcccaaggccgagaagcggctgcccgcgtccaagtcctccggcaaggagggc 226
|||||||||||||| || |||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 644 gggaagaagcccaaagcggagaagcgtctgcccgctggcaagtccgccggcaaggagggc 585
Query: 227 ---ggcgag---aagaaggggaagaagaaggccaagaagagcgtggagacctacaagatc 280
|||||| ||| ||| |||||||| |||||||||||||||||| |||||||||
Sbjct: 584 ggcggcgagggcaagcggggccggaagaagggcaagaagagcgtggagacgtacaagatc 525
Query: 281 tacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaaggccatg 340
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 524 tacatcttcaaggtgctgaagcaggtgcacccggacatcggcatctcctccaaggccatg 465
Query: 341 tccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggccgccaag 400
|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct: 464 tccatcatgaactccttcatcaacgacatcttcgagaagctcgccgccgaggccgccaag 405
Query: 401 ctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgc 460
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 404 ctcgcgcggtacaacaagaagcccaccatcacctcccgcgagatccagacctccgtccgc 345
Query: 461 ctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggccgtcacc 520
|| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct: 344 ctcgtcctccccggggagctcgcgaagcacgccgtctctgagggcaccaaggccgtcacc 285
Query: 521 aagttcacc 529
|||||||||
Sbjct: 284 aagttcacc 276
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 274,070
Number of Sequences: 832831
Number of extensions: 274070
Number of successful extensions: 83891
Number of sequences better than 0.5: 153
Number of HSP's better than 0.5 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83338
Number of HSP's gapped (non-prelim): 438
length of query: 823
length of database: 491,359,669
effective HSP length: 20
effective length of query: 803
effective length of database: 474,703,049
effective search space: 381186548347
effective search space used: 381186548347
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)