BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.458
(708 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW746700.1|AW746700 WS1_54_C07.g1_A002 Water-stressed 1 ... 815 0.0
gb|BG240706.1|BG240706 OV1_37_C05.g1_A002 Ovary 1 (OV1) Sor... 789 0.0
gb|AW746591.1|AW746591 WS1_54_C07.b1_A002 Water-stressed 1 ... 769 0.0
gb|CN127984.1|CN127984 RHOH1_26_F11.b1_A002 Acid- and alkal... 765 0.0
gb|AW747615.1|AW747615 WS1_74_B12.g1_A002 Water-stressed 1 ... 741 0.0
gb|AW925004.1|AW925004 WS1_74_B12.b1_A002 Water-stressed 1 ... 702 0.0
gb|BG241024.1|BG241024 OV1_37_C05.b1_A002 Ovary 1 (OV1) Sor... 668 0.0
gb|AI724008.1|AI724008 RHIZ1_27_C05.y1_A001 Rhizome1 (RHIZ1... 450 e-125
gb|CL158153.1|CL158153 104_346_10803346_116_31376_322 Sorgh... 426 e-117
gb|CW277987.1|CW277987 104_752_11406317_116_35679_027 Sorgh... 426 e-117
gb|CW360969.1|CW360969 fsbb001f029e21f0 Sorghum methylation... 426 e-117
gb|CW408197.1|CW408197 fsbb001f101p17k0 Sorghum methylation... 426 e-117
gb|BE918059.1|BE918059 OV1_1_D08.b1_A002 Ovary 1 (OV1) Sorg... 418 e-115
gb|BE918279.1|BE918279 OV1_1_D08.g1_A002 Ovary 1 (OV1) Sorg... 418 e-115
gb|BE919049.1|BE919049 FM1_3_D09.g1_A003 Floral-Induced Mer... 418 e-115
gb|BE919123.1|BE919123 FM1_3_D09.b1_A003 Floral-Induced Mer... 418 e-115
gb|BG240885.1|BG240885 OV1_39_E03.g1_A002 Ovary 1 (OV1) Sor... 418 e-115
gb|BG241207.1|BG241207 OV1_39_E03.b1_A002 Ovary 1 (OV1) Sor... 412 e-113
gb|CW360970.1|CW360970 fsbb001f029e21k0 Sorghum methylation... 408 e-112
gb|CL158152.1|CL158152 104_346_10803346_114_31375_322 Sorgh... 392 e-107
gb|CF757907.1|CF757907 DSAF1_24_G07.g1_A011 Drought-stresse... 365 4e-099
gb|AI724793.1|AI724793 RHIZ1_9_C11.y2_A001 Rhizome1 (RHIZ1)... 349 2e-094
gb|CW471713.1|CW471713 fsbb001f225n01f0 Sorghum methylation... 345 3e-093
gb|CL150834.1|CL150834 104_332_10778813_114_31357_365 Sorgh... 307 7e-082
gb|CW139264.1|CW139264 104_529_11135145_116_34904_041 Sorgh... 307 7e-082
gb|CW331951.1|CW331951 104_829_11481169_116_36027_007 Sorgh... 307 7e-082
gb|CL150835.1|CL150835 104_332_10778813_116_31358_365 Sorgh... 299 2e-079
gb|CW139265.1|CW139265 104_529_11135145_148_34908_041 Sorgh... 287 7e-076
gb|AW746621.1|AW746621 WS1_54_E12.b1_A002 Water-stressed 1 ... 281 4e-074
gb|AW746661.1|AW746661 WS1_54_E12.g1_A002 Water-stressed 1 ... 281 4e-074
gb|CW194713.1|CW194713 104_618_11180246_148_36800_063 Sorgh... 278 7e-073
gb|CW064610.1|CW064610 104_310_10522666_114_30142 Sorghum m... 276 3e-072
gb|CW130736.1|CW130736 104_513_11115281_148_34776_073 Sorgh... 276 3e-072
gb|AI724042.1|AI724042 RHIZ1_25_E09.y1_A001 Rhizome1 (RHIZ1... 274 1e-071
gb|CL188488.1|CL188488 104_405_10901635_116_32454_080 Sorgh... 262 4e-068
gb|CL174634.1|CL174634 104_379_10891782_148_31768_150 Sorgh... 246 2e-063
gb|CL175100.1|CL175100 104_380_10892166_148_31766_150 Sorgh... 246 2e-063
gb|CF756028.1|CF756028 DSAF1_3_C04.b1_A011 Drought-stressed... 246 2e-063
gb|CF756106.1|CF756106 DSAF1_3_C04.g1_A011 Drought-stressed... 246 2e-063
gb|CF758759.1|CF758759 DSAF1_36_C08.g1_A011 Drought-stresse... 246 2e-063
gb|CW363805.1|CW363805 fsbb001f035j05k0 Sorghum methylation... 238 6e-061
gb|CL174275.1|CL174275 104_378_10891491_148_31770_243 Sorgh... 236 2e-060
gb|CW144118.1|CW144118 104_536_11137773_148_34962_093 Sorgh... 236 2e-060
gb|CW388706.1|CW388706 fsbb001f073j08k0 Sorghum methylation... 236 2e-060
gb|CL174633.1|CL174633 104_379_10891782_116_31769_150 Sorgh... 212 3e-053
gb|CL175099.1|CL175099 104_380_10892166_116_31767_150 Sorgh... 200 1e-049
gb|CW118310.1|CW118310 104_494_11108134_148_34621_083 Sorgh... 184 7e-045
gb|CF757903.1|CF757903 DSAF1_24_F07.g1_A011 Drought-stresse... 184 7e-045
gb|CW128228.1|CW128228 104_509_11113891_148_34748_068 Sorgh... 172 3e-041
gb|CW379489.1|CW379489 fsbb001f058m16k0 Sorghum methylation... 163 3e-038
gb|CW207310.1|CW207310 104_636_11188061_148_36969_025 Sorgh... 141 1e-031
gb|CW386507.1|CW386507 fsbb001f070h05k0 Sorghum methylation... 141 1e-031
gb|CW331952.1|CW331952 104_829_11481169_148_36028_007 Sorgh... 127 1e-027
gb|CW220094.1|CW220094 104_654_11197168_148_37147_054 Sorgh... 123 2e-026
gb|CL188487.1|CL188487 104_405_10901635_114_32450_080 Sorgh... 100 3e-019
gb|CW172233.1|CW172233 104_583_11156175_148_36534_058 Sorgh... 96 5e-018
gb|CW220093.1|CW220093 104_654_11197168_116_37148_054 Sorgh... 92 8e-017
gb|BG239829.1|BG239829 OV1_29_E10.g1_A002 Ovary 1 (OV1) Sor... 84 2e-014
gb|CW277988.1|CW277988 104_752_11406317_148_35682_027 Sorgh... 82 8e-014
gb|CW172232.1|CW172232 104_583_11156175_116_36533_058 Sorgh... 56 5e-006
gb|CW194712.1|CW194712 104_618_11180246_116_36796_063 Sorgh... 56 5e-006
gb|CW481706.1|CW481706 fsbb001f241g23f0 Sorghum methylation... 42 0.068
>gb|AW746700.1|AW746700 WS1_54_C07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 618
Score = 815 bits (411), Expect = 0.0
Identities = 514/547 (93%), Gaps = 6/547 (1%)
Strand = Plus / Plus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 101
Query: 136 gtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacgtcg 195
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 102 gtccggggcaccgtcctcggatacaagaggtccaagtcgaaccagtacgagaccacgtcg 161
Query: 196 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaagcgg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 162 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcggcaagcgg 221
Query: 256 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 281
Query: 316 ggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtccaac 375
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggcaaggtcacccgcccgcacggcaactccggcgtcgtccgcgccaagttcaggtccaac 341
Query: 376 ctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 342 ctgccgccggaatccatgggccgcaaggtcagggtcttcatgtaccccagtagcatctaa 401
Query: 436 agataatctgaatgtgtggaggacc---cttttcttctagattttatcttcagctgtcct 492
||||||| |||| || ||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 402 agataatttgaaggtttggaggatcatgcttttcttctagattttatctaaagctgtcct 461
Query: 493 tgtaagggttgtgttcaggttgagagttagcaggttgagctgtctatctgagaaccattt 552
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 462 tgtaagggttgtgttcaggttgagagttagcaggttgagctgtctatttgagaacccttt 521
Query: 553 aaagttctctgagttttggtgttatggatcactgga---agtattatatgaagtttaagt 609
||||||||| ||||||||||||||| |||||| || | ||||||||| |||| ||||
Sbjct: 522 aaagttctccaagttttggtgttatgaatcacttgaaacattattatatggagttgaagt 581
Query: 610 tagaact 616
|||||||
Sbjct: 582 tagaact 588
>gb|BG240706.1|BG240706 OV1_37_C05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 491
Score = 789 bits (398), Expect = 0.0
Identities = 466/488 (95%), Gaps = 3/488 (0%)
Strand = Plus / Plus
Query: 93 cgagatggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtcct 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cgagatggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtcct 63
Query: 153 tggatacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgaggg 212
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 64 cggatacaagaggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgaggg 123
Query: 213 ggtgaacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaa 272
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 124 ggtgaacaccaaggaggacgtcgcgtggtactgcggcaagcggatggcctacatctacaa 183
Query: 273 ggccaagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgccc 332
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 184 ggccaagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcacccgccc 243
Query: 333 gcatggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccat 392
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcacggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccat 303
Query: 393 gggccgtaaggtcagggtgttcatgtaccccagcagcatctaaagataatctgaatgtgt 452
|||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| || |
Sbjct: 304 gggccgcaaggtcagggtcttcatgtaccccagtagcatctaaagataatttgaaggttt 363
Query: 453 ggaggacc---cttttcttctagattttatcttcagctgtccttgtaagggttgtgttca 509
|||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 364 ggaggatcatgcttttcttctagattttatctaaagctgtccttgtaagggttgtgttca 423
Query: 510 ggttgagagttagcaggttgagctgtctatctgagaaccatttaaagttctctgagtttt 569
|||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct: 424 ggttgagagttagcaggttgagctgtctatttgagaaccctttaaagttctccaagtttt 483
Query: 570 ggtgttat 577
||||||||
Sbjct: 484 ggtgttat 491
>gb|AW746591.1|AW746591 WS1_54_C07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 769 bits (388), Expect = 0.0
Identities = 466/490 (95%), Gaps = 4/490 (0%)
Strand = Plus / Plus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 101
Query: 136 gtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacgtcg 195
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 102 gtccggggcaccgtcctcggatacaagaggtccaagtcgaaccagtacgagaccacgtcg 161
Query: 196 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaagcgg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 162 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcggcaagcgg 221
Query: 256 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 281
Query: 316 ggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtccaac 375
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggcaaggtcacccgcccgcacggcaactccggcgtcgtccgcgccaagttcaggtccaac 341
Query: 376 ctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 342 ctgccgccggaatccatgggccgcaaggtcagggtcttcatgtaccccagtagcatctaa 401
Query: 436 agataatctgaatgtgtggaggacc---cttttcttctagattttatcttcagctgtcct 492
||||||| |||| || ||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 402 agataatttgaaggtttggaggatcatgcttttcttctagattttatctaaagctgtcct 461
Query: 493 tgtaa-gggttgtgttcaggttgagagttagcaggttgagctgtctatctgagaaccatt 551
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 462 tgtaaggggttgtgttcaggttgagagttagcaggttgagctgtctatttgagaaccctt 521
Query: 552 taaagttctc 561
||||||||||
Sbjct: 522 taaagttctc 531
>gb|CN127984.1|CN127984 RHOH1_26_F11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_F11_A002 3', mRNA sequence
Length = 820
Score = 765 bits (386), Expect = 0.0
Identities = 457/480 (95%), Gaps = 3/480 (0%)
Strand = Plus / Plus
Query: 109 cgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttggatacaagcggtcc 168
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 312 cgcacggggcagcgcgtgaggctctacgtccggggcaccgtcctcggatacaagaggtcc 371
Query: 169 aagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacaccaaggag 228
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacaccaaggag 431
Query: 229 gacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagaccaagagc 288
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagaccaagagc 491
Query: 289 agcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaactccggc 348
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 492 agcggcacccactaccgctgcatctggggcaaggtcacccgcccgcacggcaactccggc 551
Query: 349 gtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggccgtaaggtcagg 408
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 552 gtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggccgcaaggtcagg 611
Query: 409 gtgttcatgtaccccagcagcatctaaagataatctgaatgtgtggaggacc---ctttt 465
|| |||||||||||||| |||||||||||||||| |||| || ||||||| | |||||
Sbjct: 612 gtcttcatgtaccccagtagcatctaaagataatttgaaggtttggaggatcatgctttt 671
Query: 466 cttctagattttatcttcagctgtccttgtaagggttgtgttcaggttgagagttagcag 525
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cttctagattttatctaaagctgtccttgtaagggttgtgttcaggttgagagttagcag 731
Query: 526 gttgagctgtctatctgagaaccatttaaagttctctgagttttggtgttatggatcact 585
|||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct: 732 gttgagctgtctatttgagaaccctttaaagttctccaagttttggtgttatgaatcact 791
>gb|AW747615.1|AW747615 WS1_74_B12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 560
Score = 741 bits (374), Expect = 0.0
Identities = 505/546 (92%), Gaps = 7/546 (1%)
Strand = Plus / Plus
Query: 107 ggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttggatacaagcggt 166
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct: 1 ggcgcacggggcagcgcgtgaggctttacgtccggggcaccgtcctcggatacaagaggt 60
Query: 167 ccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacaccaagg 226
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 61 ccaagtcgaaccagtacgagaccacgtcgttggtgcagatcgagggggtgaacaccaagg 120
Query: 227 aggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagaccaaga 286
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagaccaaga 180
Query: 287 gcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaactccg 346
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 181 gcagcggcacccactaccgctgcatttggggcaaggtcacccgcccgcacggcaactccg 240
Query: 347 gcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggccgtaaggtca 406
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 gcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggccgcaaggtca 300
Query: 407 gggtgttcatgtaccccagcagcatctaaagataatctgaatgtgtggaggacc---ctt 463
|||| |||||||||||||| ||||| |||||||||| |||| || ||||||| | |||
Sbjct: 301 gggttttcatgtaccccagtagcatttaaagataatttgaaggtttggaggatcatgctt 360
Query: 464 ttcttctagattttatcttcagctgtccttgtaagggttgtgttcaggttgagagttagc 523
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcttctagattttatctaaagctgtccttgtaagggttgtgttcaggttgagagttagc 420
Query: 524 aggttgagctgtctatctgagaaccatttaaagttctctgagttttggtgttatggatca 583
|||||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 421 aggttgagctgtctattttagaaccctttaaagttctccaagttttggtgttatgaatca 480
Query: 584 ctgga---agtattatatgaagtttaagttagaact-aatttgtttgccatacttttgta 639
|| || | ||||||| | |||| ||||||||||| | || ||||||||| |||||||
Sbjct: 481 cttgaaacattattataaggagttgaagttagaactgagttaatttgccatatttttgta 540
Query: 640 tgatga 645
||||||
Sbjct: 541 tgatga 546
>gb|AW925004.1|AW925004 WS1_74_B12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 702 bits (354), Expect = 0.0
Identities = 419/440 (95%), Gaps = 3/440 (0%)
Strand = Plus / Plus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 106
Query: 136 gtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacgtcg 195
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 107 gtccggggcaccgtcctcggatacaagaggtccaagtcgaaccagtacgagaccacgtcg 166
Query: 196 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaagcgg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 167 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcggcaagcgg 226
Query: 256 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 286
Query: 316 ggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtccaac 375
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggcaaggtcacccgcccgcacggcaactccggcgtcgtccgcgccaagttcaggtccaac 346
Query: 376 ctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 347 ctgccgccggaatccatgggccgcaaggtcagggtcttcatgtaccccagtagcatctaa 406
Query: 436 agataatctgaatgtgtggaggacc---cttttcttctagattttatcttcagctgtcct 492
||||||| |||| || ||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 407 agataatttgaaggtttggaggatcatgcttttcttctagattttatctaaagctgtcct 466
Query: 493 tgtaagggttgtgttcaggt 512
||||||||||||||||||||
Sbjct: 467 tgtaagggttgtgttcaggt 486
>gb|BG241024.1|BG241024 OV1_37_C05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 472
Score = 668 bits (337), Expect = 0.0
Identities = 402/423 (95%), Gaps = 3/423 (0%)
Strand = Plus / Plus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 109
Query: 136 gtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacgtcg 195
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 110 gtccggggcaccgtcctcggatacaagaggtccaagtcgaaccagtacgagaccacgtcg 169
Query: 196 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaagcgg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 170 ctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcggcaagcgg 229
Query: 256 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 289
Query: 316 ggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtccaac 375
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggcaaggtcacccgcccgcacggcaactccggcgtcgtccgcgccaagttcaggtccaac 349
Query: 376 ctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 350 ctgccgccggaatccatgggccgcaaggtcagggtcttcatgtaccccagtagcatctaa 409
Query: 436 agataatctgaatgtgtggaggacc---cttttcttctagattttatcttcagctgtcct 492
||||||| |||| || ||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 410 agataatttgaaggtttggaggatcatgcttttcttctagattttatctaaagctgtcct 469
Query: 493 tgt 495
|||
Sbjct: 470 tgt 472
>gb|AI724008.1|AI724008 RHIZ1_27_C05.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 531
Score = 450 bits (227), Expect = e-125
Identities = 311/339 (91%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 12 atggtgaagggacgcacgggacagcgcgtgaggctctacgtccggggcaccatcctcgga 71
Query: 157 tacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtg 216
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 72 tacaagaggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtg 131
Query: 217 aacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggcc 276
||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 132 aacaccaaggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggcc 191
Query: 277 aagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcat 336
|||||||||||||||| |||| |||| | |||||||||||||||||| ||||||||||
Sbjct: 192 aagaccaagagcagcgagacccgctacaggtgcatctggggcaaggtcacccgcccgcac 251
Query: 337 ggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggc 396
|| |||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||
Sbjct: 252 ggtaactccggcgtcgtccgcgccaagttcaagtccaacctcccgcctgagtccatgggg 311
Query: 397 cgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| ||||||||||||
Sbjct: 312 cgcaaggtcagagtgttcatgtacccgagcagcatctaa 350
>gb|CL158153.1|CL158153 104_346_10803346_116_31376_322 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803346, DNA
sequence
Length = 707
Score = 426 bits (215), Expect = e-117
Identities = 227/231 (98%)
Strand = Plus / Plus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 68
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 69 aggaggacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagacca 128
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 129 agagcagcggcacccactaccgctgcatctggggcaaggtcacccgcccgcacggcaact 188
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 239
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 393 gggccgtaaggtcagggtgttcatgtaccccagcagcatctaaag 437
|||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 337 gggccgcaaggtcagggtcttcatgtaccccagtagcatctaaag 381
>gb|CW277987.1|CW277987 104_752_11406317_116_35679_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406317, DNA
sequence
Length = 652
Score = 426 bits (215), Expect = e-117
Identities = 227/231 (98%)
Strand = Plus / Plus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 327 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 386
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 387 aggaggacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagacca 446
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 447 agagcagcggcacccactaccgctgcatctggggcaaggtcacccgcccgcacggcaact 506
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 557
Score = 141 bits (71), Expect = 1e-031
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 204
Query: 136 gtccggggcaccgtccttggatacaag 162
||||||||||||||||| |||||||||
Sbjct: 205 gtccggggcaccgtcctcggatacaag 231
>gb|CW360969.1|CW360969 fsbb001f029e21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029e21, DNA
sequence
Length = 673
Score = 426 bits (215), Expect = e-117
Identities = 227/231 (98%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 467 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 408
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 407 aggaggacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagacca 348
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 347 agagcagcggcacccactaccgctgcatctggggcaaggtcacccgcccgcacggcaact 288
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 237
Score = 141 bits (71), Expect = 1e-031
Identities = 83/87 (95%)
Strand = Plus / Minus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 590
Query: 136 gtccggggcaccgtccttggatacaag 162
||||||||||||||||| |||||||||
Sbjct: 589 gtccggggcaccgtcctcggatacaag 563
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 393 gggccgtaaggtcagggtgttcatgtaccccagcagcatctaaag 437
|||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 139 gggccgcaaggtcagggtcttcatgtaccccagtagcatctaaag 95
>gb|CW408197.1|CW408197 fsbb001f101p17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101p17, DNA
sequence
Length = 584
Score = 426 bits (215), Expect = e-117
Identities = 227/231 (98%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 354 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 295
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 294 aggaggacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagacca 235
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 234 agagcagcggcacccactaccgctgcatctggggcaaggtcacccgcccgcacggcaact 175
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 124
Score = 141 bits (71), Expect = 1e-031
Identities = 83/87 (95%)
Strand = Plus / Minus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 477
Query: 136 gtccggggcaccgtccttggatacaag 162
||||||||||||||||| |||||||||
Sbjct: 476 gtccggggcaccgtcctcggatacaag 450
>gb|BE918059.1|BE918059 OV1_1_D08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 569
Score = 418 bits (211), Expect = e-115
Identities = 307/339 (90%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 16 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 75
Query: 157 tacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtg 216
|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 76 tacaagaggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtc 135
Query: 217 aacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggcc 276
||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 136 aacaccaaggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggcc 195
Query: 277 aagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcat 336
|||||||||||||| | |||| |||| | ||||||||||| |||||| ||||||||||
Sbjct: 196 aagaccaagagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcac 255
Query: 337 ggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggc 396
||||||||||| ||||||||||||||||||| ||| ||||| ||||| || ||||||||
Sbjct: 256 ggcaactccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgggg 315
Query: 397 cgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| ||||||||||||
Sbjct: 316 cgcaaggtcagagtgttcatgtaccctagcagcatctaa 354
>gb|BE918279.1|BE918279 OV1_1_D08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 519
Score = 418 bits (211), Expect = e-115
Identities = 307/339 (90%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 16 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 75
Query: 157 tacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtg 216
|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 76 tacaagaggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtc 135
Query: 217 aacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggcc 276
||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 136 aacaccaaggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggcc 195
Query: 277 aagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcat 336
|||||||||||||| | |||| |||| | ||||||||||| |||||| ||||||||||
Sbjct: 196 aagaccaagagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcac 255
Query: 337 ggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggc 396
||||||||||| ||||||||||||||||||| ||| ||||| ||||| || ||||||||
Sbjct: 256 ggcaactccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgggg 315
Query: 397 cgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| ||||||||||||
Sbjct: 316 cgcaaggtcagagtgttcatgtaccctagcagcatctaa 354
>gb|BE919049.1|BE919049 FM1_3_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 556
Score = 418 bits (211), Expect = e-115
Identities = 307/339 (90%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 57 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 116
Query: 157 tacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtg 216
|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 117 tacaagaggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtc 176
Query: 217 aacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggcc 276
||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 177 aacaccaaggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggcc 236
Query: 277 aagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcat 336
|||||||||||||| | |||| |||| | ||||||||||| |||||| ||||||||||
Sbjct: 237 aagaccaagagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcac 296
Query: 337 ggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggc 396
||||||||||| ||||||||||||||||||| ||| ||||| ||||| || ||||||||
Sbjct: 297 ggcaactccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgggg 356
Query: 397 cgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| ||||||||||||
Sbjct: 357 cgcaaggtcagagtgttcatgtaccctagcagcatctaa 395
>gb|BE919123.1|BE919123 FM1_3_D09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 517
Score = 418 bits (211), Expect = e-115
Identities = 307/339 (90%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 57 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 116
Query: 157 tacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtg 216
|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 117 tacaagaggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtc 176
Query: 217 aacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggcc 276
||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 177 aacaccaaggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggcc 236
Query: 277 aagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcat 336
|||||||||||||| | |||| |||| | ||||||||||| |||||| ||||||||||
Sbjct: 237 aagaccaagagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcac 296
Query: 337 ggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggc 396
||||||||||| ||||||||||||||||||| ||| ||||| ||||| || ||||||||
Sbjct: 297 ggcaactccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgggg 356
Query: 397 cgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| ||||||||||||
Sbjct: 357 cgcaaggtcagagtgttcatgtaccctagcagcatctaa 395
>gb|BG240885.1|BG240885 OV1_39_E03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 529
Score = 418 bits (211), Expect = e-115
Identities = 307/339 (90%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 7 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 66
Query: 157 tacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtg 216
|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 67 tacaagaggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtc 126
Query: 217 aacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggcc 276
||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 127 aacaccaaggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggcc 186
Query: 277 aagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcat 336
|||||||||||||| | |||| |||| | ||||||||||| |||||| ||||||||||
Sbjct: 187 aagaccaagagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcac 246
Query: 337 ggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggc 396
||||||||||| ||||||||||||||||||| ||| ||||| ||||| || ||||||||
Sbjct: 247 ggcaactccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgggg 306
Query: 397 cgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| ||||||||||||
Sbjct: 307 cgcaaggtcagagtgttcatgtaccctagcagcatctaa 345
>gb|BG241207.1|BG241207 OV1_39_E03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 456
Score = 412 bits (208), Expect = e-113
Identities = 306/339 (90%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 57 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 116
Query: 157 tacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtg 216
|||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 117 tacaagaggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtc 176
Query: 217 aacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggcc 276
||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 177 aacaccaaggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggcc 236
Query: 277 aagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcat 336
|||||||||||||| | |||| |||| | ||||||||||| |||||| ||||||||||
Sbjct: 237 aagaccaagagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcac 296
Query: 337 ggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggc 396
||||||||||| ||||||||||||||||||| ||| ||||| ||||| || ||||||||
Sbjct: 297 ggcaactccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgggg 356
Query: 397 cgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| | ||||||||||
Sbjct: 357 cgcaaggtcagagtgttcatgtaccctancagcatctaa 395
>gb|CW360970.1|CW360970 fsbb001f029e21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029e21, DNA
sequence
Length = 813
Score = 408 bits (206), Expect = e-112
Identities = 221/226 (97%)
Strand = Plus / Plus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 588 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 647
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 648 aggaggacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagacca 707
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 708 agagcagcggcacccactaccgctgcatctggggcaaggtcacccgcccgcacggcaact 767
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatc 389
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tcggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatc 813
Score = 141 bits (71), Expect = 1e-031
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 76 ggcagaagctgcagcgtcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 135
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggcagaagcagcggcggcgagatggtgaaggggcgcacggggcagcgcgtgaggctctac 465
Query: 136 gtccggggcaccgtccttggatacaag 162
||||||||||||||||| |||||||||
Sbjct: 466 gtccggggcaccgtcctcggatacaag 492
>gb|CL158152.1|CL158152 104_346_10803346_114_31375_322 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803346, DNA
sequence
Length = 761
Score = 392 bits (198), Expect = e-107
Identities = 210/214 (98%)
Strand = Plus / Minus
Query: 181 tacgagactacgtcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtgg 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tacgagaccacgtcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtgg 702
Query: 241 tactgcgggaagcggatggcctacatctacaaggccaagaccaagagcagcggcacccac 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tactgcggcaagcggatggcctacatctacaaggccaagaccaagagcagcggcacccac 642
Query: 301 taccgctgcatctggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgcc 360
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 641 taccgctgcatctggggcaaggtcacccgcccgcacggcaactccggcgtcgtccgcgcc 582
Query: 361 aagttcaggtccaacctgccgccggaatccatgg 394
||||||||||||||||||||||||||||||||||
Sbjct: 581 aagttcaggtccaacctgccgccggaatccatgg 548
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 393 gggccgtaaggtcagggtgttcatgtaccccagcagcatctaaag 437
|||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 450 gggccgcaaggtcagggtcttcatgtaccccagtagcatctaaag 406
>gb|CF757907.1|CF757907 DSAF1_24_G07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_24_G07_A011 3', mRNA sequence
Length = 531
Score = 365 bits (184), Expect = 4e-099
Identities = 256/280 (91%)
Strand = Plus / Plus
Query: 156 atacaagcggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggt 215
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atacaagaggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggt 60
Query: 216 gaacaccaaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggc 275
|||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 61 gaacaccaaggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggc 120
Query: 276 caagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgca 335
||||||||||||||||| |||| |||| | |||||||||||||||||| |||| |||||
Sbjct: 121 caagaccaagagcagcgagacccgctacaggtgcatctggggcaaggtcacccgtccgca 180
Query: 336 tggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatggg 395
||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||
Sbjct: 181 cggcaactccggcgtcgtccgcgccaagttcaagtccaaccttccgcctgagtccatggg 240
Query: 396 ccgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
|| |||||||| |||||||||||||| ||||||||||||
Sbjct: 241 gcgcaaggtcagagtgttcatgtacccgagcagcatctaa 280
>gb|AI724793.1|AI724793 RHIZ1_9_C11.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 291
Score = 349 bits (176), Expect = 2e-094
Identities = 252/276 (91%), Gaps = 6/276 (2%)
Strand = Plus / Plus
Query: 347 gcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggccgtaaggtca 406
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 gcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgggccgcaaggtca 60
Query: 407 gggtgttcatgtaccccagcagcatctaaagataatctgaatgtgtggaggacc---ctt 463
|||| |||||||||||||| |||||||||||||||| |||| || ||||||| | |||
Sbjct: 61 gggtcttcatgtaccccagtagcatctaaagataatttgaaggtttggaggatcatgctt 120
Query: 464 ttcttctagattttatcttcagctgtccttgtaagggttgtgttcaggttgagagttagc 523
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcttctagattttatctaaagctgtccttgtaagggttgtgttcaggttgagagttagc 180
Query: 524 aggttgagctgtctatctgagaaccatttaaagttctctgagttttggtgttatggatca 583
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 181 aggttgagctgtctatttgagaaccctttaaagttctccaagttttggtgttatgaatca 240
Query: 584 ctgga---agtattatatgaagtttaagttagaact 616
|| || | ||||||||| |||| |||||||||||
Sbjct: 241 cttgaaacattattatatggagttgaagttagaact 276
>gb|CW471713.1|CW471713 fsbb001f225n01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225n01, DNA
sequence
Length = 272
Score = 345 bits (174), Expect = 3e-093
Identities = 186/190 (97%)
Strand = Plus / Plus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 83 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 142
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 143 aggaggacgtcgcgtggtactgcggcaagcggatggcctacatctacaaggccaagacca 202
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 203 agagcagcggcacccactaccgctgcatctggggcaaggtcacccgcccgcacggcaact 262
Query: 344 ccggcgtcgt 353
||||||||||
Sbjct: 263 ccggcgtcgt 272
>gb|CL150834.1|CL150834 104_332_10778813_114_31357_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778813, DNA
sequence
Length = 554
Score = 307 bits (155), Expect = 7e-082
Identities = 212/231 (91%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 319
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct: 318 aggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggccaagacca 259
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||| |||| |||| | |||||||||||||||||| |||| ||||| |||||||
Sbjct: 258 agagcagcgagacccgctacaggtgcatctggggcaaggtcacccgtccgcacggcaact 199
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||||||||||||||||||||| ||||||||| ||||| || |||||||
Sbjct: 198 ccggcgtcgtccgcgccaagttcaagtccaaccttccgcctgagtccatgg 148
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 527 atggtgaagggtcgcacgggacagcgcgtgaggctctacgtccggggcaccttcctcgga 468
Query: 157 tacaag 162
||||||
Sbjct: 467 tacaag 462
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcagcatctaa 435
|||||||| |||||||||||||| ||||||||||||
Sbjct: 53 aaggtcagagtgttcatgtacccgagcagcatctaa 18
>gb|CW139264.1|CW139264 104_529_11135145_116_34904_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135145, DNA
sequence
Length = 479
Score = 307 bits (155), Expect = 7e-082
Identities = 212/231 (91%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 385
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct: 384 aggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggccaagacca 325
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||| |||| |||| | |||||||||||||||||| |||| ||||| |||||||
Sbjct: 324 agagcagcgagacccgctacaggtgcatctggggcaaggtcacccgtccgcacggcaact 265
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||||||||||||||||||||| ||||||||| ||||| || |||||||
Sbjct: 264 ccggcgtcgtccgcgccaagttcaagtccaaccttccgcctgagtccatgg 214
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcagcatctaa 435
|||||||| |||||||||||||| ||||||||||||
Sbjct: 119 aaggtcagagtgttcatgtacccgagcagcatctaa 84
>gb|CW331951.1|CW331951 104_829_11481169_116_36027_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481169, DNA
sequence
Length = 753
Score = 307 bits (155), Expect = 7e-082
Identities = 212/231 (91%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 377
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct: 376 aggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggccaagacca 317
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||| |||| |||| | |||||||||||||||||| |||| ||||| |||||||
Sbjct: 316 agagcagcgagacccgctacaggtgcatctggggcaaggtcacccgtccgcacggcaact 257
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||||||||||||||||||||| ||||||||| ||||| || |||||||
Sbjct: 256 ccggcgtcgtccgcgccaagttcaagtccaaccttccgcctgagtccatgg 206
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 585 atggtgaagggacgcacgggacagcgcgtgaggctctacgtccggggcaccatcctcgga 526
Query: 157 tacaag 162
||||||
Sbjct: 525 tacaag 520
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcagcatctaa 435
|||||||| |||||||||||||| ||||||||||||
Sbjct: 111 aaggtcagagtgttcatgtacccgagcagcatctaa 76
>gb|CL150835.1|CL150835 104_332_10778813_116_31358_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778813, DNA
sequence
Length = 758
Score = 299 bits (151), Expect = 2e-079
Identities = 211/231 (91%)
Strand = Plus / Plus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 512 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 571
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct: 572 aggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggccaagacca 631
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||| |||| |||| | |||||||||||||||||| |||| ||||| |||||||
Sbjct: 632 agagcagcgagacccgctacaggtgcatctggggcaaggtcacccgtccgcacggcaact 691
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
||||||||||||||||| |||||| ||||||||| ||||| || |||||||
Sbjct: 692 ccggcgtcgtccgcgcccagttcaagtccaaccttccgcctgagtccatgg 742
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 363 atggtgaagggacgcacgggacagcgcgtgaggctctacgtccggggcaccatcctcgga 422
Query: 157 tacaag 162
||||||
Sbjct: 423 tacaag 428
>gb|CW139265.1|CW139265 104_529_11135145_148_34908_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135145, DNA
sequence
Length = 650
Score = 287 bits (145), Expect = 7e-076
Identities = 193/209 (92%)
Strand = Plus / Plus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 501
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct: 502 aggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggccaagacca 561
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||||| |||| |||| | |||||||||||||||||| |||| ||||| |||||||
Sbjct: 562 agagcagcgagacccgctacaggtgcatctggggcaaggtcacccgtccgcacggcaact 621
Query: 344 ccggcgtcgtccgcgccaagttcaggtcc 372
|||||||||||||||||||||||| ||||
Sbjct: 622 ccggcgtcgtccgcgccaagttcaagtcc 650
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 293 atggtgaagggacgcacgggacagcgcgtgaggctctacgtccggggcaccatcctcgga 352
Query: 157 tacaag 162
||||||
Sbjct: 353 tacaag 358
>gb|AW746621.1|AW746621 WS1_54_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 492
Score = 281 bits (142), Expect = 4e-074
Identities = 220/246 (89%)
Strand = Plus / Plus
Query: 190 acgtcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcggg 249
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10 acgtcgctcgtgcagatcgagggggtcaacaccaaggaggacgtcgcgtggtacgccggc 69
Query: 250 aagcggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgc 309
||||| ||||| ||||||||||||||||||||||||||||| | |||| |||| | |||
Sbjct: 70 aagcgcatggcgtacatctacaaggccaagaccaagagcagtgagacccgctacaggtgc 129
Query: 310 atctggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcagg 369
|||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct: 130 atctggggtaaggtcacccgcccgcacggcaactccggtgtcgtccgcgccaagttcaag 189
Query: 370 tccaacctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcagc 429
|| ||||| ||||| || |||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 190 tcgaacctcccgcctgagtccatggggcgcaaggtcagagtgttcatgtaccctagcagc 249
Query: 430 atctaa 435
||||||
Sbjct: 250 atctaa 255
>gb|AW746661.1|AW746661 WS1_54_E12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 281 bits (142), Expect = 4e-074
Identities = 220/246 (89%)
Strand = Plus / Plus
Query: 190 acgtcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcggg 249
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10 acgtcgctcgtgcagatcgagggggtcaacaccaaggaggacgtcgcgtggtacgccggc 69
Query: 250 aagcggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgc 309
||||| ||||| ||||||||||||||||||||||||||||| | |||| |||| | |||
Sbjct: 70 aagcgcatggcgtacatctacaaggccaagaccaagagcagtgagacccgctacaggtgc 129
Query: 310 atctggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcagg 369
|||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct: 130 atctggggtaaggtcacccgcccgcacggcaactccggtgtcgtccgcgccaagttcaag 189
Query: 370 tccaacctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcagc 429
|| ||||| ||||| || |||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 190 tcgaacctcccgcctgagtccatggggcgcaaggtcagagtgttcatgtaccctagcagc 249
Query: 430 atctaa 435
||||||
Sbjct: 250 atctaa 255
>gb|CW194713.1|CW194713 104_618_11180246_148_36800_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180246, DNA
sequence
Length = 654
Score = 278 bits (140), Expect = 7e-073
Identities = 197/216 (91%)
Strand = Plus / Plus
Query: 179 agtacgagactacgtcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgt 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtacgagaccacgtcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgt 60
Query: 239 ggtactgcgggaagcggatggcctacatctacaaggccaagaccaagagcagcggcaccc 298
||||| || ||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 61 ggtacgctggcaagcgcatggcgtacatctacaaggccaagaccaagagcagcgagaccc 120
Query: 299 actaccgctgcatctggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcg 358
|||| | |||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 121 gctacaggtgcatctggggcaaggtcacccgtccgcacggcaactccggcgtcgtccgcg 180
Query: 359 ccaagttcaggtccaacctgccgccggaatccatgg 394
||||||||| ||||||||| ||||| || |||||||
Sbjct: 181 ccaagttcaagtccaaccttccgcctgagtccatgg 216
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 400 aaggtcagggtgttcatgtaccccagcagcatctaa 435
|||||||| |||||||||||||| ||||||||||||
Sbjct: 311 aaggtcagagtgttcatgtacccgagcagcatctaa 346
>gb|CW064610.1|CW064610 104_310_10522666_114_30142 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522666, DNA
sequence
Length = 573
Score = 276 bits (139), Expect = 3e-072
Identities = 208/231 (90%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 441 ggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtcaacacca 382
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 381 aggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggccaagacca 322
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||| | |||| |||| | ||||||||||| |||||| |||||||||| |||||||
Sbjct: 321 agagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcacggcaact 262
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||| ||||||||||||||||||| ||| ||||| ||||| || |||||||
Sbjct: 261 ccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgg 211
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcagcatctaa 435
|||||||| |||||||||||||| ||||||||||||
Sbjct: 118 aaggtcagagtgttcatgtaccctagcagcatctaa 83
>gb|CW130736.1|CW130736 104_513_11115281_148_34776_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115281, DNA
sequence
Length = 521
Score = 276 bits (139), Expect = 3e-072
Identities = 208/231 (90%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 287 ggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtcaacacca 228
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 227 aggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggccaagacca 168
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||| | |||| |||| | ||||||||||| |||||| |||||||||| |||||||
Sbjct: 167 agagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcacggcaact 108
Query: 344 ccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||| ||||||||||||||||||| ||| ||||| ||||| || |||||||
Sbjct: 107 ccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgg 57
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 459 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 400
Query: 157 tacaag 162
||||||
Sbjct: 399 tacaag 394
>gb|AI724042.1|AI724042 RHIZ1_25_E09.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 254
Score = 274 bits (138), Expect = 1e-071
Identities = 214/238 (89%), Gaps = 6/238 (2%)
Strand = Plus / Plus
Query: 385 gaatccatgggccgtaaggtcagggtgttcatgtaccccagcagcatctaaagataatct 444
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct: 1 gaatccatgggccgcaaggtcagggtcttcatgtaccccagtagcatctaaagataattt 60
Query: 445 gaatgtgtggaggacc---cttttcttctagattttatcttcagctgtccttgtaagggt 501
||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 gaaggtttggaggatcatgcttttcttctagattttatctaaagctgtccttgtaagggt 120
Query: 502 tgtgttcaggttgagagttagcaggttgagctgtctatctgagaaccatttaaagttctc 561
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 121 tgtgttcaggttgagagttagcaggttgagctgtctatttgagaaccctttaaagttctc 180
Query: 562 tgagttttggtgttatggatcactgga---agtattatatgaagtttaagttagaact 616
||||||||||||||| |||||| || | ||||||||| |||| |||||||||||
Sbjct: 181 caagttttggtgttatgaatcacttgaaacattattatatggagttgaagttagaact 238
>gb|CL188488.1|CL188488 104_405_10901635_116_32454_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901635, DNA
sequence
Length = 646
Score = 262 bits (132), Expect = 4e-068
Identities = 186/204 (91%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 212 ggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtcaacacca 153
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 152 aggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggccaagacca 93
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||| | |||| |||| | ||||||||||| |||||| |||||||||| |||||||
Sbjct: 92 agagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcacggcaact 33
Query: 344 ccggcgtcgtccgcgccaagttca 367
|||| |||||||||||||||||||
Sbjct: 32 ccggtgtcgtccgcgccaagttca 9
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 384 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 325
Query: 157 tacaag 162
||||||
Sbjct: 324 tacaag 319
>gb|CL174634.1|CL174634 104_379_10891782_148_31768_150 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891782, DNA
sequence
Length = 718
Score = 246 bits (124), Expect = 2e-063
Identities = 222/252 (88%), Gaps = 7/252 (2%)
Strand = Plus / Minus
Query: 461 cttttcttctagattttatcttcagctgtccttgtaagggttgtgttcaggttgagagtt 520
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 295 cttttcttctagattttatctaaagctgtccttgtaagggttgtgttcaggttgagagtt 236
Query: 521 agcaggttgagctgtctatctgagaaccatttaaagttctctgagttttggtgttatgga 580
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
Sbjct: 235 agcaggttgagctgtctatttgagaaccctttaaagttctccaagttttggtgttatgaa 176
Query: 581 tcactgga---agtattatatgaagtttaagttagaact-aatttgtttgccatactttt 636
||||| || | ||||||||| |||| ||||||||||| | || ||||||||| ||||
Sbjct: 175 tcacttgaaacattattatatggagttgaagttagaactgagttaatttgccatattttt 116
Query: 637 gtatgatgactctttaatcgcataatatgctcttattgcatcttgatcaacggttctgtg 696
||||||||| | |||||| | ||||||||| ||||||||||| |||||||| ||||
Sbjct: 115 gtatgatgatgcgttaatc---ttatatgctctcgttgcatcttgagcaacggttatgtg 59
Query: 697 atttcatgagcc 708
||||||||||||
Sbjct: 58 atttcatgagcc 47
>gb|CL175100.1|CL175100 104_380_10892166_148_31766_150 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892166, DNA
sequence
Length = 738
Score = 246 bits (124), Expect = 2e-063
Identities = 222/252 (88%), Gaps = 7/252 (2%)
Strand = Plus / Minus
Query: 461 cttttcttctagattttatcttcagctgtccttgtaagggttgtgttcaggttgagagtt 520
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 295 cttttcttctagattttatctaaagctgtccttgtaagggttgtgttcaggttgagagtt 236
Query: 521 agcaggttgagctgtctatctgagaaccatttaaagttctctgagttttggtgttatgga 580
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
Sbjct: 235 agcaggttgagctgtctatttgagaaccctttaaagttctccaagttttggtgttatgaa 176
Query: 581 tcactgga---agtattatatgaagtttaagttagaact-aatttgtttgccatactttt 636
||||| || | ||||||||| |||| ||||||||||| | || ||||||||| ||||
Sbjct: 175 tcacttgaaacattattatatggagttgaagttagaactgagttaatttgccatattttt 116
Query: 637 gtatgatgactctttaatcgcataatatgctcttattgcatcttgatcaacggttctgtg 696
||||||||| | |||||| | ||||||||| ||||||||||| |||||||| ||||
Sbjct: 115 gtatgatgatgcgttaatc---ttatatgctctcgttgcatcttgagcaacggttatgtg 59
Query: 697 atttcatgagcc 708
||||||||||||
Sbjct: 58 atttcatgagcc 47
>gb|CF756028.1|CF756028 DSAF1_3_C04.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_C04_A011 5', mRNA sequence
Length = 530
Score = 246 bits (124), Expect = 2e-063
Identities = 253/296 (85%)
Strand = Plus / Plus
Query: 133 tacgtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacg 192
||||| |||||||| |||| || |||||||| ||||||||||||||||||||| |||
Sbjct: 34 tacgtgcggggcacgatcctgggctacaagcgctccaagtcgaaccagtacgagcacacg 93
Query: 193 tcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaag 252
|||||| ||||||||||||| || | ||||||||||||||| ||||||||| |||| |||
Sbjct: 94 tcgctgctgcagatcgagggcgtcagcaccaaggaggacgtggcgtggtacggcggcaag 153
Query: 253 cggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatc 312
||||| |||||| | ||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 154 cggatcgcctacgtgtacaaggccaagaccaagagcgacggcaccgccgtccgatgcatc 213
Query: 313 tggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtcc 372
|||||||||||| | |||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 214 tggggcaaggtcacgcgcccgcacggtaactccggcgtcgtccgcgccaagttccggtcc 273
Query: 373 aacctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcag 428
|||| ||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct: 274 cacctcccgcccagctccatgggtaagaaggtccgcgtgttcatgtaccccagcag 329
>gb|CF756106.1|CF756106 DSAF1_3_C04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_C04_A011 3', mRNA sequence
Length = 533
Score = 246 bits (124), Expect = 2e-063
Identities = 253/296 (85%)
Strand = Plus / Plus
Query: 133 tacgtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacg 192
||||| |||||||| |||| || |||||||| ||||||||||||||||||||| |||
Sbjct: 34 tacgtgcggggcacgatcctgggctacaagcgctccaagtcgaaccagtacgagcacacg 93
Query: 193 tcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaag 252
|||||| ||||||||||||| || | ||||||||||||||| ||||||||| |||| |||
Sbjct: 94 tcgctgctgcagatcgagggcgtcagcaccaaggaggacgtggcgtggtacggcggcaag 153
Query: 253 cggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatc 312
||||| |||||| | ||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 154 cggatcgcctacgtgtacaaggccaagaccaagagcgacggcaccgccgtccgatgcatc 213
Query: 313 tggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtcc 372
|||||||||||| | |||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 214 tggggcaaggtcacgcgcccgcacggtaactccggcgtcgtccgcgccaagttccggtcc 273
Query: 373 aacctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcag 428
|||| ||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct: 274 cacctcccgcccagctccatgggtaagaaggtccgcgtgttcatgtaccccagcag 329
>gb|CF758759.1|CF758759 DSAF1_36_C08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_36_C08_A011 3', mRNA sequence
Length = 533
Score = 246 bits (124), Expect = 2e-063
Identities = 253/296 (85%)
Strand = Plus / Plus
Query: 133 tacgtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacg 192
||||| |||||||| |||| || |||||||| ||||||||||||||||||||| |||
Sbjct: 34 tacgtgcggggcacgatcctgggctacaagcgctccaagtcgaaccagtacgagcacacg 93
Query: 193 tcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaag 252
|||||| ||||||||||||| || | ||||||||||||||| ||||||||| |||| |||
Sbjct: 94 tcgctgctgcagatcgagggcgtcagcaccaaggaggacgtggcgtggtacggcggcaag 153
Query: 253 cggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatc 312
||||| |||||| | ||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 154 cggatcgcctacgtgtacaaggccaagaccaagagcgacggcaccgccgtccgatgcatc 213
Query: 313 tggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtcc 372
|||||||||||| | |||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 214 tggggcaaggtcacgcgcccgcacggtaactccggcgtcgtccgcgccaagttccggtcc 273
Query: 373 aacctgccgccggaatccatgggccgtaaggtcagggtgttcatgtaccccagcag 428
|||| ||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct: 274 cacctcccgcccagctccatgggtaagaaggtccgcgtgttcatgtaccccagcag 329
>gb|CW363805.1|CW363805 fsbb001f035j05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035j05, DNA
sequence
Length = 688
Score = 238 bits (120), Expect = 6e-061
Identities = 174/192 (90%)
Strand = Plus / Minus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 192 ggtccaagtcgaaccagtacgagaccacgtcgctcgtgcagatcgagggggtcaacacca 133
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagacca 283
|||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 132 aggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggccaagacca 73
Query: 284 agagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaact 343
||||||| | |||| |||| | ||||||||||| |||||| |||||||||| |||||||
Sbjct: 72 agagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcacggcaact 13
Query: 344 ccggcgtcgtcc 355
|||| |||||||
Sbjct: 12 ccggtgtcgtcc 1
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 364 atggtgaagggacgcacggggcagcgcgtcaggctctacgtccggggcaccatcctcgga 305
Query: 157 tacaag 162
||||||
Sbjct: 304 tacaag 299
>gb|CL174275.1|CL174275 104_378_10891491_148_31770_243 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891491, DNA
sequence
Length = 653
Score = 236 bits (119), Expect = 2e-060
Identities = 218/251 (86%)
Strand = Plus / Minus
Query: 133 tacgtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacg 192
||||| |||||||| |||| || |||||||| ||||||||||||||||||||| |||
Sbjct: 496 tacgtgcggggcacgatcctgggctacaagcgctccaagtcgaaccagtacgagcacacg 437
Query: 193 tcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaag 252
|||||| ||||||||||||| || | ||||||||||||||| ||||||||| |||| |||
Sbjct: 436 tcgctgctgcagatcgagggcgtcagcaccaaggaggacgtggcgtggtacggcggcaag 377
Query: 253 cggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatc 312
||||| |||||| | ||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 376 cggatcgcctacgtgtacaaggccaagaccaagagcgacggcaccgccgtccgatgcatc 317
Query: 313 tggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtcc 372
|||||||||||| | |||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 316 tggggcaaggtcacgcgcccgcacggtaactccggcgtcgtccgcgccaagttccggtcc 257
Query: 373 aacctgccgcc 383
|||| |||||
Sbjct: 256 cacctcccgcc 246
Score = 42.1 bits (21), Expect = 0.068
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcag 428
|||||| | ||||||||||||||||||||
Sbjct: 149 aaggtccgcgtgttcatgtaccccagcag 121
>gb|CW144118.1|CW144118 104_536_11137773_148_34962_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137773, DNA
sequence
Length = 615
Score = 236 bits (119), Expect = 2e-060
Identities = 218/251 (86%)
Strand = Plus / Minus
Query: 133 tacgtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacg 192
||||| |||||||| |||| || |||||||| ||||||||||||||||||||| |||
Sbjct: 445 tacgtgcggggcacgatcctgggctacaagcgctccaagtcgaaccagtacgagcacacg 386
Query: 193 tcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaag 252
|||||| ||||||||||||| || | ||||||||||||||| ||||||||| |||| |||
Sbjct: 385 tcgctgctgcagatcgagggcgtcagcaccaaggaggacgtggcgtggtacggcggcaag 326
Query: 253 cggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatc 312
||||| |||||| | ||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 325 cggatcgcctacgtgtacaaggccaagaccaagagcgacggcaccgccgtccgatgcatc 266
Query: 313 tggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtcc 372
|||||||||||| | |||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 265 tggggcaaggtcacgcgcccgcacggtaactccggcgtcgtccgcgccaagttccggtcc 206
Query: 373 aacctgccgcc 383
|||| |||||
Sbjct: 205 cacctcccgcc 195
Score = 42.1 bits (21), Expect = 0.068
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcag 428
|||||| | ||||||||||||||||||||
Sbjct: 98 aaggtccgcgtgttcatgtaccccagcag 70
>gb|CW388706.1|CW388706 fsbb001f073j08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073j08, DNA
sequence
Length = 663
Score = 236 bits (119), Expect = 2e-060
Identities = 218/251 (86%)
Strand = Plus / Plus
Query: 133 tacgtccggggcaccgtccttggatacaagcggtccaagtcgaaccagtacgagactacg 192
||||| |||||||| |||| || |||||||| ||||||||||||||||||||| |||
Sbjct: 150 tacgtgcggggcacgatcctgggctacaagcgctccaagtcgaaccagtacgagcacacg 209
Query: 193 tcgctggtgcagatcgagggggtgaacaccaaggaggacgtcgcgtggtactgcgggaag 252
|||||| ||||||||||||| || | ||||||||||||||| ||||||||| |||| |||
Sbjct: 210 tcgctgctgcagatcgagggcgtcagcaccaaggaggacgtggcgtggtacggcggcaag 269
Query: 253 cggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatc 312
||||| |||||| | ||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 270 cggatcgcctacgtgtacaaggccaagaccaagagcgacggcaccgccgtccgatgcatc 329
Query: 313 tggggcaaggtcgcccgcccgcatggcaactccggcgtcgtccgcgccaagttcaggtcc 372
|||||||||||| | |||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 330 tggggcaaggtcacgcgcccgcacggtaactccggcgtcgtccgcgccaagttccggtcc 389
Query: 373 aacctgccgcc 383
|||| |||||
Sbjct: 390 cacctcccgcc 400
Score = 42.1 bits (21), Expect = 0.068
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 400 aaggtcagggtgttcatgtaccccagcag 428
|||||| | ||||||||||||||||||||
Sbjct: 497 aaggtccgcgtgttcatgtaccccagcag 525
>gb|CL174633.1|CL174633 104_379_10891782_116_31769_150 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891782, DNA
sequence
Length = 737
Score = 212 bits (107), Expect = 3e-053
Identities = 170/189 (89%), Gaps = 4/189 (2%)
Strand = Plus / Plus
Query: 461 cttttcttctagattttatcttcagctgtccttgtaagggttgtgttcaggttgagagtt 520
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 545 cttttcttctagattttatctaaagctgtccttgtaagggttgtgttcaggttgagagtt 604
Query: 521 agcaggttgagctgtctatctgagaaccatttaaagttctctgagttttggtgttatgga 580
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
Sbjct: 605 agcaggttgagctgtctatttgagaaccctttaaagttctccaagttttggtgttatgaa 664
Query: 581 tcactgga---agtattatatgaagtttaagttagaact-aatttgtttgccatactttt 636
||||| || | ||||||||| |||| ||||||||||| | || ||||||||| ||||
Sbjct: 665 tcacttgaaacattattatatggagttgaagttagaactgagttaatttgccatattttt 724
Query: 637 gtatgatga 645
|||||||||
Sbjct: 725 gtatgatga 733
>gb|CL175099.1|CL175099 104_380_10892166_116_31767_150 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892166, DNA
sequence
Length = 722
Score = 200 bits (101), Expect = 1e-049
Identities = 145/159 (91%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 461 cttttcttctagattttatcttcagctgtccttgtaagggttgtgttcaggttgagagtt 520
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 545 cttttcttctagattttatctaaagctgtccttgtaagggttgtgttcaggttgagagtt 604
Query: 521 agcaggttgagctgtctatctgagaaccatttaaagttctctgagttttggtgttatgga 580
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
Sbjct: 605 agcaggttgagctgtctatttgagaaccctttaaagttctccaagttttggtgttatgaa 664
Query: 581 tcactgga---agtattatatgaagtttaagttagaact 616
||||| || | ||||||||| |||| |||||||||||
Sbjct: 665 tcacttgaaacattattatatggagttgaagttagaact 703
>gb|CW118310.1|CW118310 104_494_11108134_148_34621_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108134, DNA
sequence
Length = 345
Score = 184 bits (93), Expect = 7e-045
Identities = 153/173 (88%)
Strand = Plus / Minus
Query: 222 caaggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaagac 281
|||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct: 345 caaggaggacgtcgcgtggtacgccggcaagcgcatggcgtacatctacaaggccaagac 286
Query: 282 caagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaa 341
||||||||| | |||| |||| | ||||||||||| |||||| |||||||||| |||||
Sbjct: 285 caagagcagtgagacccgctacaggtgcatctggggtaaggtcacccgcccgcacggcaa 226
Query: 342 ctccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
|||||| ||||||||||||||||||| ||| ||||| ||||| || |||||||
Sbjct: 225 ctccggtgtcgtccgcgccaagttcaagtcgaacctcccgcctgagtccatgg 173
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcagcatctaa 435
|||||||| |||||||||||||| ||||||||||||
Sbjct: 80 aaggtcagagtgttcatgtaccctagcagcatctaa 45
>gb|CF757903.1|CF757903 DSAF1_24_F07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_24_F07_A011 3', mRNA sequence
Length = 414
Score = 184 bits (93), Expect = 7e-045
Identities = 147/165 (89%)
Strand = Plus / Plus
Query: 271 aaggccaagaccaagagcagcggcacccactaccgctgcatctggggcaaggtcgcccgc 330
|||||||||||||||||||||| ||| |||| | ||||| |||||||||||| ||||
Sbjct: 1 aaggccaagaccaagagcagcgagtcccgctacaggtgcatgtggggcaaggtcacccgt 60
Query: 331 ccgcatggcaactccggcgtcgtccgcgccaagttcaggtccaacctgccgccggaatcc 390
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| || |||
Sbjct: 61 ccgcacggcaactccggcgtcgtccgcgccaagttcaagtccaaccttccgcctgagtcc 120
Query: 391 atgggccgtaaggtcagggtgttcatgtaccccagcagcatctaa 435
||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct: 121 atggggcgcaaggtcagagtgttcatgtacccgagcagcatctaa 165
>gb|CW128228.1|CW128228 104_509_11113891_148_34748_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113891, DNA
sequence
Length = 570
Score = 172 bits (87), Expect = 3e-041
Identities = 108/115 (93%)
Strand = Plus / Plus
Query: 164 ggtccaagtcgaaccagtacgagactacgtcgctggtgcagatcgagggggtgaacacca 223
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 421 ggtccaagtcgaaccagtacgagaccacgtcgctggtgcagatcgagggggtgaacacca 480
Query: 224 aggaggacgtcgcgtggtactgcgggaagcggatggcctacatctacaaggccaa 278
|||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 481 aggaggacgtcgcgtggtacgctggcaagcgcatggcgtacatctacaaggccaa 535
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 97 atggtgaaggggcgcacggggcagcgcgtgaggctctacgtccggggcaccgtccttgga 156
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 272 atggtgaagggacgcacgggacagcgcgtgaggctctacgtccggggcaccatcctcgga 331
Query: 157 tacaag 162
||||||
Sbjct: 332 tacaag 337
>gb|CW379489.1|CW379489 fsbb001f058m16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f058m16, DNA
sequence
Length = 752
Score = 163 bits (82), Expect = 3e-038
Identities = 143/162 (88%), Gaps = 1/162 (0%)
Strand = Plus / Minus
Query: 234 cgcgtggtactgcgggaagcggatggcctacatctacaaggccaagaccaagagcagcg- 292
|||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 752 cgcgtggtacgctggcaagcgcatggcgtacatctacaaggccaagaccaagagcagcga 693
Query: 293 gcacccactaccgctgcatctggggcaaggtcgcccgcccgcatggcaactccggcgtcg 352
| ||| |||| | |||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct: 692 gaccccgctacaggtgcatctggggcaaggtcacccgtccgcacggcaactccggcgtcg 633
Query: 353 tccgcgccaagttcaggtccaacctgccgccggaatccatgg 394
||||||||||||||| ||||||||| ||||| || |||||||
Sbjct: 632 tccgcgccaagttcaagtccaaccttccgcctgagtccatgg 591
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 400 aaggtcagggtgttcatgtaccccagcagcatctaa 435
|||||||| |||||||||||||| ||||||||||||
Sbjct: 496 aaggtcagagtgttcatgtacccgagcagcatctaa 461
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,522
Number of Sequences: 832831
Number of extensions: 176522
Number of successful extensions: 49093
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48956
Number of HSP's gapped (non-prelim): 111
length of query: 708
length of database: 491,359,669
effective HSP length: 20
effective length of query: 688
effective length of database: 474,703,049
effective search space: 326595697712
effective search space used: 326595697712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)