BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.226
(818 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE917707.1|BE917707 OV1_6_B04.b1_A002 Ovary 1 (OV1) Sorg... 716 0.0
gb|BE917630.1|BE917630 OV1_6_B04.g1_A002 Ovary 1 (OV1) Sorg... 668 0.0
gb|CW319235.1|CW319235 104_811_11474377_148_35884_003 Sorgh... 609 e-172
gb|CW417908.1|CW417908 fsbb001f121c05f0 Sorghum methylation... 609 e-172
gb|BE355360.1|BE355360 DG1_114_A03.b1_A002 Dark Grown 1 (DG... 609 e-172
gb|AW745446.1|AW745446 WS1_34_A02.b1_A002 Water-stressed 1 ... 577 e-163
gb|BG411209.1|BG411209 EM1_27_A01.b1_A002 Embryo 1 (EM1) So... 577 e-163
gb|CW191309.1|CW191309 104_613_11178426_116_36942_075 Sorgh... 549 e-154
gb|AW680031.1|AW680031 WS1_34_A02.g1_A002 Water-stressed 1 ... 545 e-153
gb|BE355526.1|BE355526 DG1_114_A03.g1_A002 Dark Grown 1 (DG... 533 e-150
gb|BE355445.1|BE355445 DG1_114_A03.b2_A002 Dark Grown 1 (DG... 517 e-145
gb|CW129063.1|CW129063 104_511_11114353_148_34760_015 Sorgh... 509 e-142
gb|CW070741.1|CW070741 104_322_10590964_114_30544 Sorghum m... 484 e-135
gb|BG410872.1|BG410872 EM1_27_A01.g1_A002 Embryo 1 (EM1) So... 478 e-133
gb|CW306661.1|CW306661 104_792_11466961_148_35713_007 Sorgh... 472 e-131
gb|BZ341857.1|BZ341857 ic79b05.g1 WGS-SbicolorF (JM107 adap... 454 e-126
gb|CL152064.1|CL152064 104_335_10779694_116_31364_094 Sorgh... 454 e-126
gb|CW155043.1|CW155043 104_557_11145924_116_36362_042 Sorgh... 454 e-126
gb|AI724175.1|AI724175 RHIZ1_8_A04.y2_A001 Rhizome1 (RHIZ1)... 454 e-126
gb|BF480763.1|BF480763 FM1_14_F11.g1_A003 Floral-Induced Me... 454 e-126
gb|CD213618.1|CD213618 HS1_52_G12.b1_A012 Heat-shocked seed... 454 e-126
gb|CD213713.1|CD213713 HS1_52_G12.g1_A012 Heat-shocked seed... 454 e-126
gb|CX606979.1|CX606979 ANR1_6_B05.b1_A002 Anaerobic roots S... 454 e-126
gb|CX607063.1|CX607063 ANR1_6_B05.g1_A002 Anaerobic roots S... 454 e-126
gb|CX610420.1|CX610420 ANR1_18_D02.g1_A002 Anaerobic roots ... 454 e-126
gb|CF071535.1|CF071535 FE1_17_C03.b1_A002 Iron-deficient se... 450 e-125
gb|CW297850.1|CW297850 104_780_11462260_116_35647_012 Sorgh... 446 e-123
gb|CW410848.1|CW410848 fsbb001f105m09k0 Sorghum methylation... 446 e-123
gb|AI724242.1|AI724242 RHIZ1_8_B12.y2_A001 Rhizome1 (RHIZ1)... 444 e-123
gb|CW155044.1|CW155044 104_557_11145924_148_36361_042 Sorgh... 442 e-122
gb|CW188377.1|CW188377 104_608_11172997_148_36734_061 Sorgh... 440 e-122
gb|CD462726.1|CD462726 ETH1_39_B03.g1_A002 Ethylene-treated... 440 e-122
gb|BG052252.1|BG052252 RHIZ2_12_B05.g1_A003 Rhizome2 (RHIZ2... 438 e-121
gb|BG102543.1|BG102543 RHIZ2_34_D04.g1_A003 Rhizome2 (RHIZ2... 438 e-121
gb|BE592378.1|BE592378 WS1_94_A05.g1_A002 Water-stressed 1 ... 436 e-120
gb|BF481909.1|BF481909 FM1_22_H04.g1_A003 Floral-Induced Me... 436 e-120
gb|BF656458.1|BF656458 FM1_50_B08.g1_A003 Floral-Induced Me... 436 e-120
gb|BF704683.1|BF704683 FM1_50_B08.b1_A003 Floral-Induced Me... 436 e-120
gb|CW128767.1|CW128767 104_510_11114194_148_34755_039 Sorgh... 434 e-120
gb|BG240440.1|BG240440 OV1_30_A12.b1_A002 Ovary 1 (OV1) Sor... 434 e-120
gb|CW156116.1|CW156116 104_558_11146509_148_36368_081 Sorgh... 432 e-119
gb|CW410847.1|CW410847 fsbb001f105m09f0 Sorghum methylation... 432 e-119
gb|BE357369.1|BE357369 DG1_148_A05.g1_A002 Dark Grown 1 (DG... 432 e-119
gb|CD432572.1|CD432572 ETH1_30_E04.g1_A002 Ethylene-treated... 432 e-119
gb|CW227263.1|CW227263 104_665_11205321_148_37224_037 Sorgh... 428 e-118
gb|AW564395.1|AW564395 LG1_292_F12.b1_A002 Light Grown 1 (L... 428 e-118
gb|BE593143.1|BE593143 WS1_98_A10.g1_A002 Water-stressed 1 ... 428 e-118
gb|CD431873.1|CD431873 ETH1_11_A02.g1_A002 Ethylene-treated... 428 e-118
gb|CN150853.1|CN150853 WOUND1_71_G11.g1_A002 Wounded leaves... 428 e-118
gb|BG488106.1|BG488106 RHIZ2_63_D10.g1_A003 Rhizome2 (RHIZ2... 426 e-117
gb|BG488416.1|BG488416 RHIZ2_63_D10.b1_A003 Rhizome2 (RHIZ2... 426 e-117
gb|CX607748.1|CX607748 ANR1_30_B07.g1_A002 Anaerobic roots ... 424 e-117
gb|BF480894.1|BF480894 FM1_14_F11.b1_A003 Floral-Induced Me... 422 e-116
gb|CN125957.1|CN125957 RHOH1_14_H01.b1_A002 Acid- and alkal... 420 e-116
gb|CN126047.1|CN126047 RHOH1_14_H01.g1_A002 Acid- and alkal... 420 e-116
gb|CX608442.1|CX608442 ANR1_38_D08.g1_A002 Anaerobic roots ... 420 e-116
gb|CW182557.1|CW182557 104_598_11164141_116_36663_061 Sorgh... 416 e-114
gb|CW183462.1|CW183462 104_599_11164629_148_36672_089 Sorgh... 414 e-114
gb|CW317075.1|CW317075 104_808_11473223_116_35851_084 Sorgh... 414 e-114
gb|AI723845.1|AI723845 RHIZ1_28_B06.y1_A001 Rhizome1 (RHIZ1... 414 e-114
gb|BE599367.1|BE599367 PI1_88_F07.g1_A002 Pathogen induced ... 414 e-114
gb|CD464058.1|CD464058 ETH1_48_H05.b1_A002 Ethylene-treated... 414 e-114
gb|BE593453.1|BE593453 WS1_98_A10.b1_A002 Water-stressed 1 ... 408 e-112
gb|CD431850.1|CD431850 ETH1_11_D10.g1_A002 Ethylene-treated... 408 e-112
gb|CF431776.1|CF431776 NIT1_9_B03.b1_A002 Nitrogen-deficien... 408 e-112
gb|CW112587.1|CW112587 104_486_11104970_116_34548_007 Sorgh... 400 e-110
gb|CX607662.1|CX607662 ANR1_30_B07.b1_A002 Anaerobic roots ... 392 e-107
gb|CF071274.1|CF071274 FE1_16_D02.g1_A002 Iron-deficient se... 389 e-106
gb|CW361905.1|CW361905 fsbb001f030l13f0 Sorghum methylation... 387 e-105
gb|BE599532.1|BE599532 PI1_88_F07.b1_A002 Pathogen induced ... 387 e-105
gb|BG049237.1|BG049237 OV1_17_D01.g1_A002 Ovary 1 (OV1) Sor... 387 e-105
gb|CW105327.1|CW105327 104_474_11012845_116_34450_053 Sorgh... 381 e-104
gb|CW394994.1|CW394994 fsbb001f082n15f0 Sorghum methylation... 381 e-104
gb|CF072752.1|CF072752 FE1_25_E07.g1_A002 Iron-deficient se... 381 e-104
gb|BE592516.1|BE592516 WS1_94_A05.b1_A002 Water-stressed 1 ... 373 e-101
gb|BG048803.1|BG048803 OV1_23_C04.b1_A002 Ovary 1 (OV1) Sor... 369 e-100
gb|CF772707.1|CF772707 DSBF1_38_D05.g1_A010 Drought-stresse... 363 2e-098
gb|BG049096.1|BG049096 OV1_23_C04.g1_A002 Ovary 1 (OV1) Sor... 361 7e-098
gb|BF482021.1|BF482021 FM1_22_H04.b1_A003 Floral-Induced Me... 359 3e-097
gb|CF484983.1|CF484983 POL1_28_F02.g1_A002 Pollen Sorghum b... 347 1e-093
gb|CF431835.1|CF431835 NIT1_9_B03.g1_A002 Nitrogen-deficien... 343 2e-092
gb|CW432220.1|CW432220 fsbb001f146m24f0 Sorghum methylation... 331 6e-089
gb|CW463246.1|CW463246 fsbb001f211m02f0 Sorghum methylation... 327 9e-088
gb|AW677105.1|AW677105 DG1_4_H07.b1_A002 Dark Grown 1 (DG1)... 323 1e-086
gb|CF074009.1|CF074009 FE1_9_D12.g1_A002 Iron-deficient see... 323 1e-086
gb|AW286565.1|AW286565 LG1_334_E01.g1_A002 Light Grown 1 (L... 321 6e-086
gb|CW306660.1|CW306660 104_792_11466961_116_35709_007 Sorgh... 317 9e-085
gb|CW088567.1|CW088567 104_433_10948227_116_32575_006 Sorgh... 311 6e-083
gb|AI724884.1|AI724884 RHIZ1_30_G03.y3_A001 Rhizome1 (RHIZ1... 293 1e-077
gb|CN150769.1|CN150769 WOUND1_71_G11.b1_A002 Wounded leaves... 289 2e-076
gb|CW105328.1|CW105328 104_474_11012845_148_34446_053 Sorgh... 285 3e-075
gb|CW191310.1|CW191310 104_613_11178426_148_36941_075 Sorgh... 283 1e-074
gb|CW070742.1|CW070742 104_322_10590964_116_30543 Sorghum m... 270 2e-070
gb|CW182558.1|CW182558 104_598_11164141_148_36664_061 Sorgh... 270 2e-070
gb|BG240054.1|BG240054 OV1_17_D01.b1_A002 Ovary 1 (OV1) Sor... 268 7e-070
gb|CL159717.1|CL159717 104_349_10804465_114_31381_289 Sorgh... 256 3e-066
gb|BF704815.1|BF704815 FM1_51_H04.b1_A003 Floral-Induced Me... 250 2e-064
gb|BG558204.1|BG558204 RHIZ2_64_D04.b1_A003 Rhizome2 (RHIZ2... 250 2e-064
gb|CW104944.1|CW104944 104_474_11012677_148_34448_061 Sorgh... 222 4e-056
gb|CW394995.1|CW394995 fsbb001f082n15k0 Sorghum methylation... 218 6e-055
gb|BG052312.1|BG052312 RHIZ2_12_B05.b1_A003 Rhizome2 (RHIZ2... 216 2e-054
gb|BG102866.1|BG102866 RHIZ2_34_D04.b1_A003 Rhizome2 (RHIZ2... 216 2e-054
gb|CW344083.1|CW344083 104_846_11487770_116_36196_005 Sorgh... 212 4e-053
gb|CW490111.1|CW490111 fsbb001f275g08k0 Sorghum methylation... 202 4e-050
gb|BF656582.1|BF656582 FM1_51_H04.g1_A003 Floral-Induced Me... 202 4e-050
gb|CW415400.1|CW415400 fsbb001f115h21f0 Sorghum methylation... 198 6e-049
gb|CW088569.1|CW088569 104_433_10948227_251_32621_006 Sorgh... 196 2e-048
gb|BG560769.1|BG560769 RHIZ2_64_D04.g1_A003 Rhizome2 (RHIZ2... 192 4e-047
gb|AI723852.1|AI723852 RHIZ1_28_C06.y1_A001 Rhizome1 (RHIZ1... 184 9e-045
gb|CF430869.1|CF430869 NIT1_1_E01.b1_A002 Nitrogen-deficien... 180 1e-043
gb|CW424980.1|CW424980 fsbb001f135j06f0 Sorghum methylation... 174 8e-042
gb|CW113300.1|CW113300 104_487_11105369_148_34551_071 Sorgh... 165 8e-039
gb|AI724525.1|AI724525 RHIZ1_37_E01.y1_A001 Rhizome1 (RHIZ1... 157 2e-036
gb|CW238284.1|CW238284 104_695_11216646_148_37417_029 Sorgh... 151 1e-034
gb|BE353104.1|BE353104 DG1_4_H07.g1_A002 Dark Grown 1 (DG1)... 139 5e-031
gb|CW415401.1|CW415401 fsbb001f115h21k0 Sorghum methylation... 121 1e-025
gb|CW104943.1|CW104943 104_474_11012677_116_34452_061 Sorgh... 119 4e-025
gb|CW317076.1|CW317076 104_808_11473223_148_35855_084 Sorgh... 117 2e-024
gb|CW049116.1|CW049116 104_288_10513836_114_30200 Sorghum m... 101 1e-019
gb|CL152063.1|CL152063 104_335_10779694_114_31363_094 Sorgh... 86 6e-015
gb|CW424981.1|CW424981 fsbb001f135j06k0 Sorghum methylation... 86 6e-015
gb|BE358843.1|BE358843 DG1_32_D03.g1_A002 Dark Grown 1 (DG1... 76 6e-012
gb|CF434162.1|CF434162 NIT1_32_H03.g1_A002 Nitrogen-deficie... 72 9e-011
gb|CL179294.1|CL179294 104_388_10895213_148_31909_125 Sorgh... 68 1e-009
gb|CW105329.1|CW105329 104_474_11012845_148_34479_053 Sorgh... 68 1e-009
gb|CF483259.1|CF483259 POL1_21_A09.b1_A002 Pollen Sorghum b... 68 1e-009
gb|CD423112.1|CD423112 SA1_27_E02.b1_A002 Salicylic acid-tr... 44 0.020
gb|BZ329231.1|BZ329231 hv84e11.b1 WGS-SbicolorF (JM107 adap... 42 0.079
gb|CW101176.1|CW101176 104_468_11004499_116_34396_066 Sorgh... 42 0.079
gb|CW205011.1|CW205011 104_633_11186849_116_36925_075 Sorgh... 42 0.079
gb|CW476786.1|CW476786 fsbb001f233m18f0 Sorghum methylation... 42 0.079
gb|CW476787.1|CW476787 fsbb001f233m18k0 Sorghum methylation... 42 0.079
gb|CW492665.1|CW492665 fsbb001f283a22k0 Sorghum methylation... 42 0.079
gb|CD427268.1|CD427268 SA1_18_G03.g1_A002 Salicylic acid-tr... 42 0.079
gb|CW244195.1|CW244195 104_705_11220462_148_37591_031 Sorgh... 40 0.31
gb|CW305066.1|CW305066 104_790_11466120_116_37435_092 Sorgh... 40 0.31
gb|CW475854.1|CW475854 fsbb001f232g20k0 Sorghum methylation... 40 0.31
gb|CD427946.1|CD427946 ETH1_35_A12.b1_A002 Ethylene-treated... 40 0.31
gb|CN130423.1|CN130423 RHOH1_41_H09.b1_A002 Acid- and alkal... 40 0.31
gb|CN130867.1|CN130867 RHOH1_44_H01.b1_A002 Acid- and alkal... 40 0.31
gb|CN132448.1|CN132448 OX1_6_F03.b1_A002 Oxidatively-stress... 40 0.31
gb|CN138802.1|CN138802 OX1_14_B11.b1_A002 Oxidatively-stres... 40 0.31
gb|CN138868.1|CN138868 OX1_14_B11.g1_A002 Oxidatively-stres... 40 0.31
gb|CX615957.1|CX615957 GABR1_25_A06.b1_A002 GA- or brassino... 40 0.31
>gb|BE917707.1|BE917707 OV1_6_B04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 554
Score = 716 bits (361), Expect = 0.0
Identities = 478/517 (92%), Gaps = 10/517 (1%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 549 ctaagacgaggtgaacttggtgacggccttggtgccctcggagacggcgtgcttggcgag 490
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 489 ctccccggggaggacgaggcggacggaagtctggatctctcgggacgtgatggtgggctt 430
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 429 cttgttgtagcgggcgagcttggcggactcggcggcgagcttctcgaagatgtcgttgat 370
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 369 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 310
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 309 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggccttcttcttgcc 250
Query: 575 cttcttgccctc---------gccggcgccggacttgcccgcggggaggcgtttctccgc 625
|||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct: 249 cttcttgccctcgccgtccttgccggcgctggacttgcccgcggggaggcgcttctccgc 190
Query: 626 cttcggcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctccgc 685
||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct: 189 cttcggcttcttccccgccggggtcttctccgccttctcggccgcgggctcctcctccgc 130
Query: 686 gggcttcttcgccgccggctttttctccgccttgggcgccatcgatgctgcggattgatc 745
||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct: 129 gggcttcttcgccgccggcttcttctccgccttgggcgccatcgattctgcggcttgatt 70
Query: 746 cgcggttggggggctttgcgctttgctcggtcgggtt 782
|| || |||||||||| |||||||||||||| |||||
Sbjct: 69 cgagg-tggggggcttcgcgctttgctcggttgggtt 34
>gb|BE917630.1|BE917630 OV1_6_B04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 493
Score = 668 bits (337), Expect = 0.0
Identities = 455/493 (92%), Gaps = 11/493 (2%)
Strand = Plus / Minus
Query: 257 agagggaaggcaaccaatctaagacgaagtgaacttggtgaccgcctttgt-gccttca- 314
|||||| |||| ||| ||||||||||| |||||||||||||| ||||| || ||| ||
Sbjct: 493 agaggggaggcgacctatctaagacgaggtgaacttggtgacggccttggttgccctcgt 434
Query: 315 gagacggcgtgcttggcgagctcgccgggtaggacgaggcggacggaggtctggatctcg 374
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 433 gagacggcgtgcttggcgagctccccggggaggacgaggcggacggaagtctggatctct 374
Query: 375 cgggaggtgatggtgggcttcttgttgtagcgggcgagcttggcggcctccgcggcgagc 434
||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 373 cgggacgtgatggtgggcttcttgttgtagcgggcgagcttggcggactcggcggcgagc 314
Query: 435 ttctcgaagatgtcgttgatgaaggaattcatgatggacatggccttggacgagatgccg 494
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 313 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaggagatgccg 254
Query: 495 atgtcggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacgctc 554
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgtccgggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacgctc 194
Query: 555 ttcttggctttcttcttgcccttcttgccctc---------gccggcgccggacttgccc 605
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 193 ttcttggccttcttcttgcccttcttgccctcgccgtccttgccggcgctggacttgccc 134
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctcg 665
||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 133 gcggggaggcgcttctccgccttcggcttcttccccgccggggtcttctccgccttctcg 74
Query: 666 gtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccgccttgggcgcc 725
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 73 gccgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggcgcc 14
Query: 726 atcgatgctgcgg 738
|||||| ||||||
Sbjct: 13 atcgattctgcgg 1
>gb|CW319235.1|CW319235 104_811_11474377_148_35884_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474377, DNA
sequence
Length = 704
Score = 609 bits (307), Expect = e-172
Identities = 434/476 (91%), Gaps = 9/476 (1%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 606 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 547
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 546 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 487
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| || |||||||||| ||| || || |||||||||||||||||||||||
Sbjct: 486 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 427
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 367
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 366 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 307
Query: 575 cttcttgccctcgccggc------gccgg---acttgcccgcggggaggcgtttctccgc 625
|||||||||||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct: 306 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 247
Query: 626 cttcggcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctccgc 685
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 187
Query: 686 gggcttcttcgccgccggctttttctccgccttgggcgccatcgatgctgcggatt 741
||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||
Sbjct: 186 gggcttcttcgccgccggcttcttctccgccttgggtgccatcggtggtgcggatt 131
>gb|CW417908.1|CW417908 fsbb001f121c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f121c05, DNA
sequence
Length = 812
Score = 609 bits (307), Expect = e-172
Identities = 434/476 (91%), Gaps = 9/476 (1%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 556 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 497
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 496 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 437
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| || |||||||||| ||| || || |||||||||||||||||||||||
Sbjct: 436 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 377
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 376 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 317
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 316 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 257
Query: 575 cttcttgccctcgccggc------gccgg---acttgcccgcggggaggcgtttctccgc 625
|||||||||||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct: 256 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 197
Query: 626 cttcggcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctccgc 685
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 137
Query: 686 gggcttcttcgccgccggctttttctccgccttgggcgccatcgatgctgcggatt 741
||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||
Sbjct: 136 gggcttcttcgccgccggcttcttctccgccttgggtgccatcggtggtgcggatt 81
>gb|BE355360.1|BE355360 DG1_114_A03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 609 bits (307), Expect = e-172
Identities = 434/476 (91%), Gaps = 9/476 (1%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 526 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 467
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 466 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 407
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| || |||||||||| ||| || || |||||||||||||||||||||||
Sbjct: 406 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 347
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 346 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 287
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 286 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 227
Query: 575 cttcttgccctcgccggc------gccgg---acttgcccgcggggaggcgtttctccgc 625
|||||||||||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct: 226 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 167
Query: 626 cttcggcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctccgc 685
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 107
Query: 686 gggcttcttcgccgccggctttttctccgccttgggcgccatcgatgctgcggatt 741
||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||
Sbjct: 106 gggcttcttcgccgccggcttcttctccgccttgggtgccatcggtggtgcggatt 51
>gb|AW745446.1|AW745446 WS1_34_A02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 577 bits (291), Expect = e-163
Identities = 400/436 (91%), Gaps = 9/436 (2%)
Strand = Plus / Minus
Query: 315 gagacggcgtgcttggcgagctcgccgggtaggacgaggcggacggaggtctggatctcg 374
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 496 gagacggcgtgcttggcgagctcgccggggaggacgaggcgcaccgaggtctggatctcg 437
Query: 375 cgggaggtgatggtgggcttcttgttgtagcgggcgagcttggcggcctccgcggcgagc 434
|||||||||||||||||||||||||||||||| || |||||||||| ||| || || |||
Sbjct: 436 cgggaggtgatggtgggcttcttgttgtagcgcgccagcttggcggactcggccgcaagc 377
Query: 435 ttctcgaagatgtcgttgatgaaggaattcatgatggacatggccttggacgagatgccg 494
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 376 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagatgccg 317
Query: 495 atgtcggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacgctc 554
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 316 atgtccgggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacggac 257
Query: 555 ttcttggctttcttcttgcccttcttgccctcgccggc------gccgg---acttgccc 605
||||| || |||||||| |||||||||||||||||| | ||||| ||||||||
Sbjct: 256 ttcttcgccttcttcttccccttcttgccctcgccgccctccttgccggcggacttgccc 197
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctcg 665
|||||||| || ||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 196 gcggggagccgcttctcggccttgggcttcttccccgccggggccttctccgccttctcg 137
Query: 666 gtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccgccttgggcgcc 725
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 136 gtcgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggtgcc 77
Query: 726 atcgatgctgcggatt 741
|||| || ||||||||
Sbjct: 76 atcggtggtgcggatt 61
>gb|BG411209.1|BG411209 EM1_27_A01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 577 bits (291), Expect = e-163
Identities = 400/436 (91%), Gaps = 9/436 (2%)
Strand = Plus / Minus
Query: 315 gagacggcgtgcttggcgagctcgccgggtaggacgaggcggacggaggtctggatctcg 374
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 494 gagacggcgtgcttggcgagctcgccggggaggacgaggcgcaccgaggtctggatctcg 435
Query: 375 cgggaggtgatggtgggcttcttgttgtagcgggcgagcttggcggcctccgcggcgagc 434
|||||||||||||||||||||||||||||||| || |||||||||| ||| || || |||
Sbjct: 434 cgggaggtgatggtgggcttcttgttgtagcgcgccagcttggcggactcggccgcaagc 375
Query: 435 ttctcgaagatgtcgttgatgaaggaattcatgatggacatggccttggacgagatgccg 494
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 374 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagatgccg 315
Query: 495 atgtcggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacgctc 554
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 314 atgtccgggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacggac 255
Query: 555 ttcttggctttcttcttgcccttcttgccctcgccggc------gccgg---acttgccc 605
||||| || |||||||| |||||||||||||||||| | ||||| ||||||||
Sbjct: 254 ttcttcgccttcttcttccccttcttgccctcgccgccctccttgccggcggacttgccc 195
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctcg 665
|||||||| || ||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 194 gcggggagccgcttctcggccttgggcttcttccccgccggggccttctccgccttctcg 135
Query: 666 gtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccgccttgggcgcc 725
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 134 gtcgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggtgcc 75
Query: 726 atcgatgctgcggatt 741
|||| || ||||||||
Sbjct: 74 atcggtggtgcggatt 59
>gb|CW191309.1|CW191309 104_613_11178426_116_36942_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178426, DNA
sequence
Length = 724
Score = 549 bits (277), Expect = e-154
Identities = 422/472 (89%), Gaps = 15/472 (3%)
Strand = Plus / Minus
Query: 270 ccaatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttg 329
||||||||||| || ||||||||||| || ||||| ||||| || || ||||||||||||
Sbjct: 617 ccaatctaagatgaggtgaacttggtaacggccttggtgccctcggacacggcgtgcttg 558
Query: 330 gcgagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtg 389
||||||||||| || ||||||||||| || || ||||||||||| | |||||||||||||
Sbjct: 557 gcgagctcgcctgggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtg 498
Query: 390 ggcttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcg 449
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 497 ggcttcttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcg 438
Query: 450 ttgatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacc 509
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 437 ttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtgcacc 378
Query: 510 tgcttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttc 569
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 377 tgcttgagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttc 318
Query: 570 ttgcccttctt------gccctcgccggcgccggacttgcccgcggggaggcgtttctcc 623
||||||||||| |||||| | || | |||||||||||||||||||| ||||||
Sbjct: 317 ttgcccttcttgtcgccgccctccttgccggcagacttgcccgcggggaggcgcttctcc 258
Query: 624 gccttcggcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctcc 683
||||| ||||||||||| ||||| |||||| |||| ||||||||||||||||
Sbjct: 257 gccttgggcttcttccccgccggggccttc---------tcggccgcgggctcctcctcc 207
Query: 684 gcgggcttcttcgccgccggctttttctccgccttgggcgccatcgatgctg 735
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 gcgggcttcttcgccgccggcttcttctccgccttgggcgccatcgatgctg 155
>gb|AW680031.1|AW680031 WS1_34_A02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 558
Score = 545 bits (275), Expect = e-153
Identities = 390/428 (91%), Gaps = 9/428 (2%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 428 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 369
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 368 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 309
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| || |||||||||| ||| || || |||||||||||||||||||||||
Sbjct: 308 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 249
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 248 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 189
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 188 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 129
Query: 575 cttcttgccctcgccggc------gccgg---acttgcccgcggggaggcgtttctccgc 625
|||||||||||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct: 128 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 69
Query: 626 cttcggcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctccgc 685
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 9
Query: 686 gggcttct 693
||||||||
Sbjct: 8 gggcttct 1
>gb|BE355526.1|BE355526 DG1_114_A03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 533 bits (269), Expect = e-150
Identities = 384/422 (90%), Gaps = 9/422 (2%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 422 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 363
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 362 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 303
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| || |||||||||| ||| || || |||||||||||||||||||||||
Sbjct: 302 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 243
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 242 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 183
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 182 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 123
Query: 575 cttcttgccctcgccggc------gccgg---acttgcccgcggggaggcgtttctccgc 625
|||||||||||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct: 122 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 63
Query: 626 cttcggcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctccgc 685
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 3
Query: 686 gg 687
||
Sbjct: 2 gg 1
>gb|BE355445.1|BE355445 DG1_114_A03.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 517 bits (261), Expect = e-145
Identities = 367/402 (91%), Gaps = 9/402 (2%)
Strand = Plus / Minus
Query: 349 cgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtagcggg 408
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 452 cgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggcttcttgttgtagcgcg 393
Query: 409 cgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattcatga 468
| |||||||||| ||| || || ||||||||||||||||||||||||||||| |||||||
Sbjct: 392 ccagcttggcggactcggccgcaagcttctcgaagatgtcgttgatgaaggagttcatga 333
Query: 469 tggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttgaaga 528
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 332 tggacatggccttggacgagatgccgatgtccgggtgcacctgcttgagcaccttgaaga 273
Query: 529 tgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttcttgccctcgc 588
||||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||
Sbjct: 272 tgtagatcttgtaggtctccacggacttcttcgccttcttcttccccttcttgccctcgc 213
Query: 589 cggc------gccgg---acttgcccgcggggaggcgtttctccgccttcggcttcttcc 639
|| | ||||| |||||||||||||||| || ||||| ||||| ||||||||||
Sbjct: 212 cgccctccttgccggcggacttgcccgcggggagccgcttctcggccttgggcttcttcc 153
Query: 640 ctgccggagccttctccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccg 699
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ccgccggggccttctccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccg 93
Query: 700 ccggctttttctccgccttgggcgccatcgatgctgcggatt 741
||||||| |||||||||||||| ||||||| || ||||||||
Sbjct: 92 ccggcttcttctccgccttgggtgccatcggtggtgcggatt 51
>gb|CW129063.1|CW129063 104_511_11114353_148_34760_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114353, DNA
sequence
Length = 698
Score = 509 bits (257), Expect = e-142
Identities = 424/480 (88%), Gaps = 21/480 (4%)
Strand = Plus / Minus
Query: 272 aatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggc 331
||||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 643 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 584
Query: 332 gagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtggg 391
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 583 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 524
Query: 392 cttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgtt 451
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 523 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 464
Query: 452 gatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctg 511
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 463 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 404
Query: 512 cttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttctt 571
||| || |||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 403 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttgcccttcttcct 344
Query: 572 gcccttctt------gccctc---gccggcgccggacttgcccgcggggaggcgtttctc 622
|||||||| |||||| ||||||| ||||||||||| ||||| || |||||
Sbjct: 343 ccccttcttctcgccgccctccttgccggcggacgacttgcccgccgggagccgcttctc 284
Query: 623 cgccttcggcttcttccctgccggagccttct---------ccgccttctcggtcgcggg 673
|||||| ||||||||||| || || ||||||| |||||||||| || |||
Sbjct: 283 cgccttgggcttcttccccgcgggggccttctccgccggagccgccttctc---cgaggg 227
Query: 674 ctcctcctccgcgggcttcttcgccgccggctttttctccgccttgggcgccatcgatgc 733
||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 226 ctcctcctccgcgggcttcttcgacgccggcttcttctctgccttgggcgccatcgatgc 167
>gb|CW070741.1|CW070741 104_322_10590964_114_30544 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10590964, DNA
sequence
Length = 613
Score = 484 bits (244), Expect = e-135
Identities = 325/352 (92%), Gaps = 10/352 (2%)
Strand = Plus / Plus
Query: 440 gaagatgtcgttgatgaaggaattcatgatggacatggccttggacgagatgccgatgtc 499
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gaagatgtcgttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtc 60
Query: 500 ggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacgctcttctt 559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacgctcttctt 120
Query: 560 ggctttcttcttgcccttcttgccctcgccg---------gcgccggacttgcccgcggg 610
||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 121 ggccttcttcttgcccttcttgccctcgccgtccttgccggcgctggacttgcccgcggg 180
Query: 611 gaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctcggtcgc 670
|||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||| |||
Sbjct: 181 gaggcgcttctccgccttcggcttcttccccgccggggtcttctccgccttctcggccgc 240
Query: 671 gggctcctcctccgcgggcttcttcgccgccggctttttctccgccttgggcgccatcga 730
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 gggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggcgccatcga 300
Query: 731 tgctgcggattgatccgcggttggggggctttgcgctttgctcggtcgggtt 782
| |||||| ||||| || || |||||||||| |||||||||||||| |||||
Sbjct: 301 ttctgcggcttgattcgagg-tggggggcttcgcgctttgctcggttgggtt 351
>gb|BG410872.1|BG410872 EM1_27_A01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 537
Score = 478 bits (241), Expect = e-133
Identities = 356/394 (90%), Gaps = 9/394 (2%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 394 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 335
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 334 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 275
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| || |||||||||| ||| || || |||||||||||||||||||||||
Sbjct: 274 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 215
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 214 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 155
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 154 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 95
Query: 575 cttcttgccctcgccggc------gccgg---acttgcccgcggggaggcgtttctccgc 625
|||||||||||||||| | ||||| |||||||||||||||| || ||||| ||
Sbjct: 94 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 35
Query: 626 cttcggcttcttccctgccggagccttctccgcc 659
||| ||||||||||| ||||| ||||||||||||
Sbjct: 34 cttgggcttcttccccgccggggccttctccgcc 1
>gb|CW306661.1|CW306661 104_792_11466961_148_35713_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466961, DNA
sequence
Length = 711
Score = 472 bits (238), Expect = e-131
Identities = 304/326 (93%)
Strand = Plus / Minus
Query: 237 accagacaccagtacaaacgagagggaaggcaaccaatctaagacgaagtgaacttggtg 296
|||||| | |||||||||| |||||| |||| ||| | ||||||||| ||||||||||||
Sbjct: 330 accagaaatcagtacaaacaagaggggaggcgacctagctaagacgaggtgaacttggtg 271
Query: 297 accgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggtaggacgaggcgg 356
|| ||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 270 acggccttggtgccctcggagacggcgtgcttggcgagctccccggggaggacgaggcgg 211
Query: 357 acggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtagcgggcgagcttg 416
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 210 acggaagtctggatctctcgggacgtgatggtgggcttcttgttgtagcgggcgagcttg 151
Query: 417 gcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattcatgatggacatg 476
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 150 gcggactcggcggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatg 91
Query: 477 gccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttgaagatgtagatc 536
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 90 gccttggaggagatgccgatgtccgggtgcacctgcttgagcaccttgaagatgtagatc 31
Query: 537 ttgtaggtctccacgctcttcttggc 562
||||||||||||||||||||||||||
Sbjct: 30 ttgtaggtctccacgctcttcttggc 5
>gb|BZ341857.1|BZ341857 ic79b05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic79b05 5', DNA sequence
Length = 685
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Plus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 85 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 144
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 204
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 264
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 265 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 324
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 325 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 384
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 385 ttgccctcgccgccgcc 401
Score = 101 bits (51), Expect = 1e-019
Identities = 116/139 (83%), Gaps = 9/139 (6%)
Strand = Plus / Plus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 413 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 464
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct: 465 -cgccttctcggccgcgggctcctcctccgccagcttcttcgccgcgggtttcttctcgg 523
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 524 ccttgggcgccatcgatgc 542
>gb|CL152064.1|CL152064 104_335_10779694_116_31364_094 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779694, DNA
sequence
Length = 690
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Plus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 271 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 330
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 390
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 391 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 450
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 451 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 510
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 511 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 570
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 571 ttgccctcgccgccgcc 587
Score = 58.0 bits (29), Expect = 1e-006
Identities = 82/101 (81%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 599 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 650
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttc 695
||||||||||| |||||||||||||||||| ||||||||
Sbjct: 651 -cgccttctcggccgcgggctcctcctccgccagcttcttc 690
>gb|CW155043.1|CW155043 104_557_11145924_116_36362_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145924, DNA
sequence
Length = 743
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 548 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 489
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 429
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 428 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 369
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 368 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 309
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 308 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 249
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 248 ttgccctcgccgccgcc 232
Score = 101 bits (51), Expect = 1e-019
Identities = 116/139 (83%), Gaps = 9/139 (6%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 220 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 169
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct: 168 -cgccttctcggccgcgggctcctcctccgccagcttcttcgccgcgggtttcttctcgg 110
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 109 ccttgggcgccatcgatgc 91
>gb|AI724175.1|AI724175 RHIZ1_8_A04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 509
Score = 454 bits (229), Expect = e-126
Identities = 351/392 (89%), Gaps = 6/392 (1%)
Strand = Plus / Minus
Query: 270 ccaatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttg 329
||||||||||| || ||||||||||| || ||||| ||||| || || ||||||||||||
Sbjct: 396 ccaatctaagatgaggtgaacttggtaacggccttggtgccctcggacacggcgtgcttg 337
Query: 330 gcgagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtg 389
||||||||||| || ||||||||||| || || ||||||||||| | |||||||||||||
Sbjct: 336 gcgagctcgcctgggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtg 277
Query: 390 ggcttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcg 449
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 ggcttcttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcg 217
Query: 450 ttgatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacc 509
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 216 ttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtgcacc 157
Query: 510 tgcttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttc 569
||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 156 tgcttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttc 97
Query: 570 ttgcccttctt------gccctcgccggcgccggacttgcccgcggggaggcgtttctcc 623
||||||||||| |||||| | || | ||||||||||| |||||||| ||||||
Sbjct: 96 ttgcccttcttgtcgccgccctccttgccggccgacttgcccgccgggaggcgcttctcc 37
Query: 624 gccttcggcttcttccctgccggagccttctc 655
||||| ||||||||||| ||||| ||||||||
Sbjct: 36 gccttgggcttcttccccgccggggccttctc 5
>gb|BF480763.1|BF480763 FM1_14_F11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 592
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 428 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 369
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 309
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 308 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 249
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 248 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 189
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 188 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 129
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 128 ttgccctcgccgccgcc 112
Score = 75.8 bits (38), Expect = 6e-012
Identities = 88/106 (83%), Gaps = 9/106 (8%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| |||||||| || ||||||||||| ||||||||||| ||||| ||||||
Sbjct: 100 cggacttgccagcggggagacgcttctccgccttgggcttcttcccggccggcgccttc- 42
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgc 700
|||| |||||||||||||||||| |||||||||||||
Sbjct: 41 --------tcggccgcgggctcctcctccgccagcttcttcgccgc 4
>gb|CD213618.1|CD213618 HS1_52_G12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_G12_A012 3', mRNA sequence
Length = 611
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
Sbjct: 375 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgagcccc 316
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 256
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 196
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 195 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 136
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 135 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 76
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 75 ttgccctcgccgccgcc 59
Score = 60.0 bits (30), Expect = 3e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccc 640
|||||||||| |||||||| || ||||||||||| |||||||||||
Sbjct: 47 cggacttgccagcggggagacgcttctccgccttgggcttcttccc 2
>gb|CD213713.1|CD213713 HS1_52_G12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_G12_A012 5', mRNA sequence
Length = 729
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
Sbjct: 534 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgagcccc 475
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 415
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 414 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 355
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 354 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 295
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 294 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 235
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 234 ttgccctcgccgccgcc 218
Score = 117 bits (59), Expect = 2e-024
Identities = 118/139 (84%), Gaps = 9/139 (6%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| |||||||| || ||||||||||| ||||||||||| ||||| | |||||
Sbjct: 206 cggacttgccagcggggagacgcttctccgccttgggcttcttcccggccggcgtcttct 147
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||| ||||||||||||||||| ||||||||||||| ||||| ||||| |
Sbjct: 146 ccgcc---------gcgggctcctcctccgccagcttcttcgccgcgggcttcttctcgg 96
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 95 ccttgggcgccatcgatgc 77
>gb|CX606979.1|CX606979 ANR1_6_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_B05_A002 3', mRNA sequence
Length = 665
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 505 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 446
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 386
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 326
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 325 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 266
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 265 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 206
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 205 ttgccctcgccgccgcc 189
Score = 101 bits (51), Expect = 1e-019
Identities = 116/139 (83%), Gaps = 9/139 (6%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 177 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 126
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct: 125 -cgccttctcggccgcgggctcctcctccgccagcttcttcgccgcgggtttcttctcgg 67
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 66 ccttgggcgccatcgatgc 48
>gb|CX607063.1|CX607063 ANR1_6_B05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_B05_A002 5', mRNA sequence
Length = 702
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 524 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 465
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 405
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 404 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 345
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 344 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 285
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 284 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 225
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 224 ttgccctcgccgccgcc 208
Score = 101 bits (51), Expect = 1e-019
Identities = 116/139 (83%), Gaps = 9/139 (6%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 196 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 145
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct: 144 -cgccttctcggccgcgggctcctcctccgccagcttcttcgccgcgggtttcttctcgg 86
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 85 ccttgggcgccatcgatgc 67
>gb|CX610420.1|CX610420 ANR1_18_D02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_18_D02_A002 5', mRNA sequence
Length = 711
Score = 454 bits (229), Expect = e-126
Identities = 295/317 (93%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 523 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 464
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 404
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 403 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 344
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 343 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 284
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 283 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 224
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 223 ttgccctcgccgccgcc 207
Score = 101 bits (51), Expect = 1e-019
Identities = 116/139 (83%), Gaps = 9/139 (6%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 195 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 144
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct: 143 -cgccttctcggccgcgggctcctcctccgccagcttcttcgccgcgggtttcttctcgg 85
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 84 ccttgggcgccatcgatgc 66
>gb|CF071535.1|CF071535 FE1_17_C03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_17_C03_A002 3', mRNA sequence
Length = 466
Score = 450 bits (227), Expect = e-125
Identities = 293/315 (93%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 340 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 281
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 280 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 221
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| || |||||||||| ||| || || |||||||||||||||||||||||
Sbjct: 220 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 161
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 160 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 101
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct: 100 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 41
Query: 575 cttcttgccctcgcc 589
|||||||||||||||
Sbjct: 40 cttcttgccctcgcc 26
>gb|CW297850.1|CW297850 104_780_11462260_116_35647_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462260, DNA
sequence
Length = 662
Score = 446 bits (225), Expect = e-123
Identities = 288/309 (93%)
Strand = Plus / Minus
Query: 272 aatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggc 331
||||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 370 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 311
Query: 332 gagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtggg 391
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 310 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 251
Query: 392 cttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgtt 451
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 250 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 191
Query: 452 gatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctg 511
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 190 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 131
Query: 512 cttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttctt 571
||| || |||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 130 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttgcccttcttcct 71
Query: 572 gcccttctt 580
||||||||
Sbjct: 70 ccccttctt 62
>gb|CW410848.1|CW410848 fsbb001f105m09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105m09, DNA
sequence
Length = 598
Score = 446 bits (225), Expect = e-123
Identities = 294/317 (92%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 523 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 464
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 404
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 403 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 344
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 343 gagttcatgatggacatgcccttggaggagatgccgatgtccgggtgcacctgcttcagc 284
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttc 578
||||||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
Sbjct: 283 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccggccccgc 224
Query: 579 ttgccctcgccggcgcc 595
|||||||||||| ||||
Sbjct: 223 ttgccctcgccgccgcc 207
Score = 101 bits (51), Expect = 1e-019
Identities = 116/139 (83%), Gaps = 9/139 (6%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 195 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 144
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct: 143 -cgccttctcggccgcgggctcctcctccgccagcttcttcgccgcgggtttcttctcgg 85
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 84 ccttgggcgccatcgatgc 66
>gb|AI724242.1|AI724242 RHIZ1_8_B12.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 448
Score = 444 bits (224), Expect = e-123
Identities = 272/288 (94%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct: 295 ctaagatgaagtaaacttggtaaccgccttggtgccctcagagacggcgtgcttggcgag 236
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 235 ctcgccgggaaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggctt 176
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 175 cttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgat 116
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 115 gaaggagttcatgatggacatggccttggacgagataccaatgtccgggtgcacctgctt 56
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggc 562
||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 55 gagcaccttgaagatgtagatcttgtacgtctcgacgctcttcttggc 8
>gb|CW155044.1|CW155044 104_557_11145924_148_36361_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145924, DNA
sequence
Length = 679
Score = 442 bits (223), Expect = e-122
Identities = 274/291 (94%)
Strand = Plus / Plus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 336 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 395
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 455
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 456 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 515
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 516 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 575
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttc 569
||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct: 576 accttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttc 626
>gb|CW188377.1|CW188377 104_608_11172997_148_36734_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172997, DNA
sequence
Length = 707
Score = 440 bits (222), Expect = e-122
Identities = 288/310 (92%)
Strand = Plus / Minus
Query: 272 aatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggc 331
||||||||| || |||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 559 aatctaagatgaggtgaacttggtgacggccttggtgccctcggagacggcgtgcttggc 500
Query: 332 gagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtggg 391
|||||||||||| ||||||||||| || || ||||||||||| | |||||||||||||||
Sbjct: 499 gagctcgccggggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtggg 440
Query: 392 cttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgtt 451
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 439 cttcttgttgtagcgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgtt 380
Query: 452 gatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctg 511
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 379 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtcagggtgcacctg 320
Query: 512 cttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttctt 571
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 319 cttgagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttctt 260
Query: 572 gcccttcttg 581
|||||||||
Sbjct: 259 ccccttcttg 250
Score = 123 bits (62), Expect = 3e-026
Identities = 120/140 (85%), Gaps = 12/140 (8%)
Strand = Plus / Minus
Query: 597 gacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttctcc 656
||||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct: 228 gacttgcccgccgggaggcgcttctccgccttgggcttcttccccgccggggccttc--- 172
Query: 657 gccttctcggtcgcgggctcctcct---ccgcgggcttcttcgccgccggctttttctcc 713
|||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 171 ------tcggccgcgggctcctcctccgccgcgggcttcttcgccgccggcttcttctcc 118
Query: 714 gccttgggcgccatcgatgc 733
|||||||| |||||||||||
Sbjct: 117 gccttgggagccatcgatgc 98
>gb|CD462726.1|CD462726 ETH1_39_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_39_B03_A002 5', mRNA sequence
Length = 637
Score = 440 bits (222), Expect = e-122
Identities = 295/318 (92%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 546 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 487
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 427
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 426 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 367
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 366 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 307
Query: 519 accttgaagatgtagatcttgtaggtctccacgc-tcttcttggctttcttcttgccctt 577
||||||||||||||||||||||| |||||||||| |||||||| | |||||| ||||
Sbjct: 306 accttgaagatgtagatcttgtacgtctccacgcttcttcttgcccttcttccggccccg 247
Query: 578 cttgccctcgccggcgcc 595
||||||||||||| ||||
Sbjct: 246 cttgccctcgccgccgcc 229
Score = 101 bits (51), Expect = 1e-019
Identities = 116/139 (83%), Gaps = 9/139 (6%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
|||||||||| ||||| || || |||||||| || ||||||||||| |||||
Sbjct: 217 cggacttgccagcgggcagacgcttctccgctttgggcttcttcccggccgg-------- 166
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct: 165 -cgccttctcggccgcgggctcctcctccgccagcttcttcgccgcgggtttcttctcgg 107
Query: 715 ccttgggcgccatcgatgc 733
|||||||||||||||||||
Sbjct: 106 ccttgggcgccatcgatgc 88
>gb|BG052252.1|BG052252 RHIZ2_12_B05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 464
Score = 438 bits (221), Expect = e-121
Identities = 287/309 (92%)
Strand = Plus / Minus
Query: 272 aatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggc 331
||||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 363 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 304
Query: 332 gagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtggg 391
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 303 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 244
Query: 392 cttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgtt 451
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 243 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 184
Query: 452 gatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctg 511
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 183 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 124
Query: 512 cttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttctt 571
||| || ||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 123 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttccccttcttcct 64
Query: 572 gcccttctt 580
||||||||
Sbjct: 63 ccccttctt 55
>gb|BG102543.1|BG102543 RHIZ2_34_D04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 495
Score = 438 bits (221), Expect = e-121
Identities = 287/309 (92%)
Strand = Plus / Minus
Query: 272 aatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggc 331
||||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 379 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 320
Query: 332 gagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtggg 391
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 319 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 260
Query: 392 cttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgtt 451
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 259 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 200
Query: 452 gatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctg 511
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 199 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 140
Query: 512 cttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttctt 571
||| || ||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 139 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttccccttcttcct 80
Query: 572 gcccttctt 580
||||||||
Sbjct: 79 ccccttctt 71
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 597 gacttgcccgcggggaggcgtttctccgccttcggcttcttccc 640
||||||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 45 gacttgcccgccgggagccgcttctccgccttgggcttcttccc 2
>gb|BE592378.1|BE592378 WS1_94_A05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 464
Score = 436 bits (220), Expect = e-120
Identities = 289/312 (92%)
Strand = Plus / Minus
Query: 270 ccaatctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttg 329
||||||||||| || ||||||||||| || ||||| ||||| || || ||||||||||||
Sbjct: 318 ccaatctaagatgaggtgaacttggtaacggccttggtgccctcggacacggcgtgcttg 259
Query: 330 gcgagctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtg 389
||||||||||| || ||||||||||| || || ||||||||||| | |||||||||||||
Sbjct: 258 gcgagctcgcctgggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtg 199
Query: 390 ggcttcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcg 449
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 198 ggcttcttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcg 139
Query: 450 ttgatgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacc 509
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 138 ttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtgcacc 79
Query: 510 tgcttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttc 569
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 78 tgcttgagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttc 19
Query: 570 ttgcccttcttg 581
||||||||||||
Sbjct: 18 ttgcccttcttg 7
>gb|BF481909.1|BF481909 FM1_22_H04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 506
Score = 436 bits (220), Expect = e-120
Identities = 277/296 (93%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 306 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 247
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 187
Query: 405 cgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattc 464
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 186 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 127
Query: 465 atgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttg 524
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 126 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 67
Query: 525 aagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttctt 580
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 66 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttctt 11
>gb|BF656458.1|BF656458 FM1_50_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 556
Score = 436 bits (220), Expect = e-120
Identities = 277/296 (93%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 303 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 244
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 184
Query: 405 cgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattc 464
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 183 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 124
Query: 465 atgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttg 524
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 123 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 64
Query: 525 aagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttctt 580
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 63 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttctt 8
>gb|BF704683.1|BF704683 FM1_50_B08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 563
Score = 436 bits (220), Expect = e-120
Identities = 277/296 (93%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 518 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 459
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 399
Query: 405 cgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattc 464
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 398 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 339
Query: 465 atgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttg 524
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 338 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 279
Query: 525 aagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttctt 580
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 278 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttctt 223
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctc 664
||||| ||||| ||||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct: 191 gcgggcaggcgcttctcggccttgggcttcttccctgcgggcgccttctccgccttctc 133
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 687 ggcttcttcgccgccggctttttctccgccttgggcgccatcg 729
||||||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 122 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 80
>gb|CW128767.1|CW128767 104_510_11114194_148_34755_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114194, DNA
sequence
Length = 652
Score = 434 bits (219), Expect = e-120
Identities = 276/295 (93%)
Strand = Plus / Plus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 192 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 251
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 252 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 311
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 312 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgat 371
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 372 gaacgagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 431
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttc 569
|||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct: 432 cagcaccttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttc 486
Score = 73.8 bits (37), Expect = 2e-011
Identities = 112/135 (82%), Gaps = 4/135 (2%)
Strand = Plus / Plus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
||||||||||||| ||||| || ||||||||||| ||||||||||| || || | |||||
Sbjct: 518 cggacttgcccgccgggagacgcttctccgccttgggcttcttccccgcggggggcttct 577
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
|||| | || ||||| ||||||| | ||||||||||||| ||| | | |||||||
Sbjct: 578 ccgc---cggggccgcggattcctcct-cacgggcttcttcgctgcccggctcttctccg 633
Query: 715 ccttgggcgccatcg 729
|||||||||||||||
Sbjct: 634 ccttgggcgccatcg 648
>gb|BG240440.1|BG240440 OV1_30_A12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 434 bits (219), Expect = e-120
Identities = 276/295 (93%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 532 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 473
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 472 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 413
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 412 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgat 353
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 352 gaacgagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 293
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttc 569
|||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct: 292 cagcaccttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttc 238
Score = 113 bits (57), Expect = 3e-023
Identities = 116/135 (85%), Gaps = 3/135 (2%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
||||||||||||| ||||| || ||||||||||| ||||||||||| || || | |||||
Sbjct: 206 cggacttgcccgccgggagacgcttctccgccttgggcttcttccccgcggggggcttct 147
Query: 655 ccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccggctttttctccg 714
||||| || ||||| ||||||||| ||||||||||||| |||||||| |||||||
Sbjct: 146 ccgccgg---ggccgcggattcctcctccacgggcttcttcgctgccggcttcttctccg 90
Query: 715 ccttgggcgccatcg 729
|||||||||||||||
Sbjct: 89 ccttgggcgccatcg 75
>gb|CW156116.1|CW156116 104_558_11146509_148_36368_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146509, DNA
sequence
Length = 670
Score = 432 bits (218), Expect = e-119
Identities = 318/351 (90%), Gaps = 9/351 (2%)
Strand = Plus / Plus
Query: 400 tgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaagg 459
||||||| || |||||||||| ||| || || ||||||||||||||||||||||||||||
Sbjct: 1 tgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgatgaagg 60
Query: 460 aattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagca 519
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 agttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgcttgagca 120
Query: 520 ccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttct 579
|||||||||||||||||||||||||||||||| |||||| || |||||||| |||||||
Sbjct: 121 ccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccccttct 180
Query: 580 tgccctcgccggc------gccgg---acttgcccgcggggaggcgtttctccgccttcg 630
||||||||||| | ||||| |||||||||||||||| || ||||| ||||| |
Sbjct: 181 tgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggccttgg 240
Query: 631 gcttcttccctgccggagccttctccgccttctcggtcgcgggctcctcctccgcgggct 690
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgcgggct 300
Query: 691 tcttcgccgccggctttttctccgccttgggcgccatcgatgctgcggatt 741
|||||||||||||||| |||||||||||||| ||||||| || ||||||||
Sbjct: 301 tcttcgccgccggcttcttctccgccttgggtgccatcggtggtgcggatt 351
>gb|CW410847.1|CW410847 fsbb001f105m09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105m09, DNA
sequence
Length = 733
Score = 432 bits (218), Expect = e-119
Identities = 294/318 (92%), Gaps = 1/318 (0%)
Strand = Plus / Plus
Query: 279 gacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcg 338
||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 360 gacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttcgcgagctcc 419
Query: 339 ccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccggggaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttg 479
Query: 399 ttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaag 458
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 480 ttgtaccgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaag 539
Query: 459 gaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagc 518
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 540 gagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagc 599
Query: 519 accttgaagatgtagatctt-gtaggtctccacgctcttcttggctttcttcttgccctt 577
|||||||||||||||||||| ||| |||||||||||||||||| | |||||| ||||
Sbjct: 600 accttgaagatgtagatcttggtacgtctccacgctcttcttgcccttcttccggccccg 659
Query: 578 cttgccctcgccggcgcc 595
|||| |||||||| ||||
Sbjct: 660 cttggcctcgccgccgcc 677
>gb|BE357369.1|BE357369 DG1_148_A05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 616
Score = 432 bits (218), Expect = e-119
Identities = 284/306 (92%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| ||||| |||||||| || ||||| ||||| || ||||||||||||||||||||
Sbjct: 502 ctaagaggaagtaaacttggtaacagccttggtgccctcggagacggcgtgcttggcgag 443
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||
Sbjct: 442 ctcgccgggaaggacgaggcgcaccgacgtctggatctcccgggaggtgatggtgggctt 383
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 cttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgat 323
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 322 gaaggagttcatgatggacatggccttggaggagataccaatgtccgggtgcacctgctt 263
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 262 gagcaccttgaagatgtagatcttgtacgtctcgacgctcttcttggccttcttcttccc 203
Query: 575 cttctt 580
||||||
Sbjct: 202 cttctt 197
Score = 63.9 bits (32), Expect = 2e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 677 ctcctccgcgggcttcttcgccgccggctttttctccgccttgggcgccatc 728
||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||
Sbjct: 139 ctcctccgccggcttcttctccgcgggcttcttctcggccttgggcgccatc 88
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 607 cggggaggcgtttctccgccttcggcttcttc 638
|||||| ||||||||||||| | |||||||||
Sbjct: 179 cggggacgcgtttctccgccctgggcttcttc 148
>gb|CD432572.1|CD432572 ETH1_30_E04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_E04_A002 5', mRNA sequence
Length = 667
Score = 432 bits (218), Expect = e-119
Identities = 284/306 (92%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| ||||| |||||||| || ||||| ||||| || ||||||||||||||||||||
Sbjct: 513 ctaagaggaagtaaacttggtaacagccttggtgccctcggagacggcgtgcttggcgag 454
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||
Sbjct: 453 ctcgccgggaaggacgaggcgcaccgacgtctggatctcccgggaggtgatggtgggctt 394
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 393 cttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgat 334
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 333 gaaggagttcatgatggacatggccttggaggagataccaatgtccgggtgcacctgctt 274
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 273 gagcaccttgaagatgtagatcttgtacgtctcgacgctcttcttggccttcttcttccc 214
Query: 575 cttctt 580
||||||
Sbjct: 213 cttctt 208
Score = 63.9 bits (32), Expect = 2e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 677 ctcctccgcgggcttcttcgccgccggctttttctccgccttgggcgccatc 728
||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||
Sbjct: 150 ctcctccgccggcttcttctccgcgggcttcttctcggccttgggcgccatc 99
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 607 cggggaggcgtttctccgccttcggcttcttc 638
|||||| ||||||||||||| | |||||||||
Sbjct: 190 cggggacgcgtttctccgccctgggcttcttc 159
>gb|CW227263.1|CW227263 104_665_11205321_148_37224_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205321, DNA
sequence
Length = 694
Score = 428 bits (216), Expect = e-118
Identities = 294/320 (91%), Gaps = 10/320 (3%)
Strand = Plus / Plus
Query: 472 acatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttgaagatgt 531
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 acatggccttggaggagatgccgatgtccgggtgcacctgcttgagcaccttgaagatgt 60
Query: 532 agatcttgtaggtctccacgctcttcttggctttcttcttgcccttcttgccctcgccg- 590
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 agatcttgtaggtctccacgctcttcttggccttcttcttgcccttcttgccctcgccgt 120
Query: 591 --------gcgccggacttgcccgcggggaggcgtttctccgccttcggcttcttccctg 642
|||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 121 ccttgccggcgctggacttgcccgcggggaggcgcttctccgccttcggcttcttccccg 180
Query: 643 ccggagccttctccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgccg 702
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 ccggggtcttctccgccttctcggccgcgggctcctcctccgcgggcttcttcgccgccg 240
Query: 703 gctttttctccgccttgggcgccatcgatgctgcggattgatccgcggttggggggcttt 762
|||| |||||||||||||||||||||||| |||||| ||||| || || ||||||||||
Sbjct: 241 gcttcttctccgccttgggcgccatcgattctgcggcttgattcgagg-tggggggcttc 299
Query: 763 gcgctttgctcggtcgggtt 782
|||||||||||||| |||||
Sbjct: 300 gcgctttgctcggttgggtt 319
>gb|AW564395.1|AW564395 LG1_292_F12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 568
Score = 428 bits (216), Expect = e-118
Identities = 276/296 (93%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 513 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 454
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 394
Query: 405 cgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattc 464
|| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct: 393 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 334
Query: 465 atgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttg 524
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 333 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 274
Query: 525 aagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttctt 580
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 273 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttctt 218
Score = 61.9 bits (31), Expect = 9e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctc 664
||||| ||||| ||||| ||||| |||||||| ||||| || |||||||||||||||||
Sbjct: 186 gcgggcaggcgcttctcggccttgggcttctttcctgcgggcgccttctccgccttctc 128
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 687 ggcttcttcgccgccggctttttctccgccttgggcgccatcg 729
||||||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 117 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 75
>gb|BE593143.1|BE593143 WS1_98_A10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 596
Score = 428 bits (216), Expect = e-118
Identities = 276/296 (93%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 459 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 400
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 340
Query: 405 cgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattc 464
|| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct: 339 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 280
Query: 465 atgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttg 524
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 279 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 220
Query: 525 aagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttctt 580
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 219 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttctt 164
Score = 61.9 bits (31), Expect = 9e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctc 664
||||| ||||| ||||| ||||| |||||||| ||||| || |||||||||||||||||
Sbjct: 132 gcgggcaggcgcttctcggccttgggcttctttcctgcgggcgccttctccgccttctc 74
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 687 ggcttcttcgccgccggctttttctccgccttgggcgccatcg 729
||||||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 63 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 21
>gb|CD431873.1|CD431873 ETH1_11_A02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_11_A02_A002 5', mRNA sequence
Length = 667
Score = 428 bits (216), Expect = e-118
Identities = 276/296 (93%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 537 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 478
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 418
Query: 405 cgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattc 464
|| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct: 417 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 358
Query: 465 atgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttg 524
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 357 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 298
Query: 525 aagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttctt 580
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 297 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttctt 242
Score = 61.9 bits (31), Expect = 9e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctc 664
||||| ||||| ||||| ||||| |||||||| ||||| || |||||||||||||||||
Sbjct: 210 gcgggcaggcgcttctcggccttgggcttctttcctgcgggcgccttctccgccttctc 152
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 687 ggcttcttcgccgccggctttttctccgccttgggcgccatcg 729
||||||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 141 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 99
>gb|CN150853.1|CN150853 WOUND1_71_G11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_71_G11_A002 5', mRNA sequence
Length = 765
Score = 428 bits (216), Expect = e-118
Identities = 276/296 (93%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| || || || ||||||||||||||||||||||| |||||
Sbjct: 519 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 460
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 400
Query: 405 cgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaattc 464
|| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct: 399 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 340
Query: 465 atgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcaccttg 524
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 339 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 280
Query: 525 aagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcccttctt 580
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 279 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttctt 224
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 606 gcggggaggcgtttctccgccttcggcttcttccctgccggagccttctccgccttctc 664
||||| ||||| ||||| ||||| |||||||| || || || |||||||||||||||||
Sbjct: 192 gcgggcaggcgcttctcggccttgggcttctttccagcgggcgccttctccgccttctc 134
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 687 ggcttcttcgccgccggctttttctccgccttgggcgccatcg 729
||||||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 123 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 81
>gb|BG488106.1|BG488106 RHIZ2_63_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 514
Score = 426 bits (215), Expect = e-117
Identities = 275/295 (93%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 410 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 351
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 350 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 291
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 290 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgat 231
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 230 gaaggagttcatgatggacatggccttggaggagataccgatgtccgggtgcacctgctt 171
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttc 569
|||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct: 170 cagcaccttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttc 116
Score = 73.8 bits (37), Expect = 2e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 595 cggacttgcccgcggggaggcgtttctccgccttcggcttcttccctgccggagccttct 654
||||||||||||| ||||| || ||||||||||| ||||||||||| || || |||||||
Sbjct: 84 cggacttgcccgccgggagacgcttctccgccttgggcttcttccccgcgggggccttct 25
Query: 655 ccgcc 659
|||||
Sbjct: 24 ccgcc 20
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 280,522
Number of Sequences: 832831
Number of extensions: 280522
Number of successful extensions: 87989
Number of sequences better than 0.5: 144
Number of HSP's better than 0.5 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87513
Number of HSP's gapped (non-prelim): 390
length of query: 818
length of database: 491,359,669
effective HSP length: 20
effective length of query: 798
effective length of database: 474,703,049
effective search space: 378813033102
effective search space used: 378813033102
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)