BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum ... 636 0.0
gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sor... 509 e-142
gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/ce... 492 e-137
gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Mer... 484 e-135
gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Me... 359 2e-097
gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) So... 355 4e-096
gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Me... 337 9e-091
gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stresse... 323 1e-086
gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Me... 315 3e-084
gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2... 311 5e-083
gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Me... 283 1e-074
gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1... 264 1e-068
gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorgh... 222 4e-056
gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum m... 222 4e-056
gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorgh... 222 4e-056
gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorgh... 222 4e-056
gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorgh... 214 9e-054
gb|CF757039.1|CF757039 DSAF1_12_H07.g1_A011 Drought-stresse... 186 2e-045
gb|BF656320.1|BF656320 FM1_49_A08.g1_A003 Floral-Induced Me... 178 5e-043
gb|CW280850.1|CW280850 104_756_11407852_116_35452_012 Sorgh... 172 3e-041
gb|CL153693.1|CL153693 104_338_10780894_116_31370_142 Sorgh... 157 2e-036
gb|CW041428.1|CW041428 104_274_10506544_116_30434 Sorghum m... 149 4e-034
gb|CW041429.1|CW041429 104_274_10506544_116_30484 Sorghum m... 149 4e-034
gb|CW083677.1|CW083677 104_426_10945316_116_32439_080 Sorgh... 149 4e-034
gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Me... 149 4e-034
gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sor... 149 4e-034
gb|BG465193.1|BG465193 EM1_73_A03.g1_A002 Embryo 1 (EM1) So... 149 4e-034
gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) So... 149 4e-034
gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle... 149 4e-034
gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum b... 149 4e-034
gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stres... 149 4e-034
gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum ... 149 4e-034
gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2... 141 1e-031
gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle... 141 1e-031
gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stres... 141 1e-031
gb|CW382183.1|CW382183 fsbb001f063p06k0 Sorghum methylation... 131 1e-028
gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2... 131 1e-028
gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum b... 131 1e-028
gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Me... 129 4e-028
gb|CW272375.1|CW272375 104_744_11403400_148_36227_054 Sorgh... 121 1e-025
gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/ce... 107 1e-021
gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2... 105 6e-021
gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2... 105 6e-021
gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infecte... 101 9e-020
gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Me... 98 1e-018
gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) So... 90 3e-016
gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle... 90 3e-016
gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Me... 84 2e-014
gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Me... 84 2e-014
gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sor... 76 5e-012
gb|BI099442.1|BI099442 IP1_42_B10.g1_A002 Immature pannicle... 70 3e-010
gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation... 68 1e-009
gb|CW234191.1|CW234191 104_687_11213849_148_37382_067 Sorgh... 54 2e-005
gb|CW253695.1|CW253695 104_717_11225238_116_35111_023 Sorgh... 54 2e-005
gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorgh... 54 2e-005
gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation... 54 2e-005
gb|CW452021.1|CW452021 fsbb001f192f20f0 Sorghum methylation... 54 2e-005
gb|BI140331.1|BI140331 IP1_52_A07.g1_A002 Immature pannicle... 54 2e-005
gb|BI211863.1|BI211863 IP1_62_D02.g1_A002 Immature pannicle... 54 2e-005
gb|BG049795.1|BG049795 FM1_65_F04.g1_A003 Floral-Induced Me... 52 7e-005
gb|BG051751.1|BG051751 FM1_60_H01.g1_A003 Floral-Induced Me... 52 7e-005
gb|BG933280.1|BG933280 WS1_92_E05.g1_A002 Water-stressed 1 ... 52 7e-005
gb|BZ336052.1|BZ336052 hz28d11.b1 WGS-SbicolorF (JM107 adap... 44 0.018
gb|CW066457.1|CW066457 104_313_10523697_114_30148 Sorghum m... 44 0.018
gb|CW257089.1|CW257089 104_722_11227151_148_35148_090 Sorgh... 44 0.018
gb|CW288849.1|CW288849 104_767_11412169_148_35539_007 Sorgh... 44 0.018
gb|BI351222.1|BI351222 IP1_71_E08.g1_A002 Immature pannicle... 44 0.018
gb|CF772019.1|CF772019 DSBF1_28_A01.g9_A010 Drought-stresse... 44 0.018
gb|CW066458.1|CW066458 104_313_10523697_115_30147 Sorghum m... 40 0.28
gb|CW066459.1|CW066459 104_313_10523697_115_30149 Sorghum m... 40 0.28
gb|CW066485.1|CW066485 104_313_10523709_115_30147 Sorghum m... 40 0.28
gb|CW102127.1|CW102127 104_470_11011172_116_34417_076 Sorgh... 40 0.28
gb|CW257088.1|CW257088 104_722_11227151_116_35152_090 Sorgh... 40 0.28
gb|CW409274.1|CW409274 fsbb001f103i06f0 Sorghum methylation... 40 0.28
gb|CF487966.1|CF487966 POL1_47_A08.b1_A002 Pollen Sorghum b... 40 0.28
gb|CF488045.1|CF488045 POL1_47_A08.g1_A002 Pollen Sorghum b... 40 0.28
>gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1523
Score = 636 bits (321), Expect = 0.0
Identities = 433/470 (92%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 771 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagttttt 712
Query: 61 tcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgcca 120
|||||| | ||||||||||||||||||||| |||||||| ||||| | ||||||||||||
Sbjct: 711 tcagaccggatcaccagacaatgttcttcccggaactgtcgtggacaataaagtttgcca 652
Query: 121 tcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcctaagaactttgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 592
Query: 181 cacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtt 240
||||| ||||||||||||||||| |||||||||||| ||| ||||| |||||||||||
Sbjct: 591 gacccattatcatgttctgcacgatgagataggtttctctgctgacgaaatgcaggagtt 532
Query: 241 tgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|||||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||
Sbjct: 531 tgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcagtagttgctcc 472
Query: 301 agtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagat 360
| | |||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||
Sbjct: 471 aatctgctacgcccaccttgctgcagcccaggtgggcacgttcctgaaattcgaggagat 412
Query: 361 gtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgcc 420
||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 411 gtcagacacgtcctccagccagg---gagggcatacctcggcgggcagtgctcccgtgcc 355
Query: 421 ggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 354 ggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 305
>gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 509 bits (257), Expect = e-142
Identities = 358/391 (91%), Gaps = 3/391 (0%)
Strand = Plus / Plus
Query: 80 aatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttc 139
||||||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||
Sbjct: 1 aatgttcttcccggaactgtcgtggacaataaagtttgccatcctaagaactttgacttc 60
Query: 140 tacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctg 199
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 61 tacatgtgtgcacatgctgggatgattggaacaacaaggccgacccattatcatgttctg 120
Query: 200 cacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttac 259
||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct: 121 cacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttat 180
Query: 260 gtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgcccacctc 319
||||| || |||||||| |||||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 181 gtgtatcaaaggagcacaacagccatctcagtagttgctccaatctgctatgcccacctt 240
Query: 320 gctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcctccagc 379
||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 241 gctgcagcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagc 300
Query: 380 cagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcctgcat 439
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 301 cag---ggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcat 357
Query: 440 gacaaagtcaggagctccatgttcttctgct 470
|| ||||| ||||| ||||||||||||||||
Sbjct: 358 gagaaagtgaggagttccatgttcttctgct 388
>gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 3', mRNA sequence
Length = 638
Score = 492 bits (248), Expect = e-137
Identities = 334/362 (92%), Gaps = 3/362 (0%)
Strand = Plus / Plus
Query: 109 taaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2 taaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctgggatgattgg 61
Query: 169 aacaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgacga 228
|||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| |||||
Sbjct: 62 aacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgacga 121
Query: 229 gatgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctc 288
||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 122 aatgcaggagtttgttcattcgctctcttacgtgtatcaaaggagcacaacagccatctc 181
Query: 289 agtggttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgag 348
||| ||||||||| | ||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 182 agtagttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaa 241
Query: 349 attggaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcag 408
||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 242 attcgaggagatgtcagacacgtcctccagccag---ggagggcatacctcggcgggcag 298
Query: 409 tgctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctg 468
|||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 299 tgctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctg 358
Query: 469 ct 470
||
Sbjct: 359 ct 360
>gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 484 bits (244), Expect = e-135
Identities = 333/362 (91%), Gaps = 3/362 (0%)
Strand = Plus / Plus
Query: 109 taaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12 taaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctgggatgattgg 71
Query: 169 aacaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgacga 228
|||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| |||||
Sbjct: 72 aacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgacga 131
Query: 229 gatgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctc 288
||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||
Sbjct: 132 aatgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctc 191
Query: 289 agtggttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgag 348
||| ||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 192 agtagttgctccaatctgctacgcccaccttgctgcagcccaggtgggcacgttcctgaa 251
Query: 349 attggaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcag 408
||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 252 attcgaggagatgtcagacacgtcctccagccag---ggagggcatacctcggcgggcag 308
Query: 409 tgctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctg 468
|||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 309 tgctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctg 368
Query: 469 ct 470
||
Sbjct: 369 ct 370
>gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 550
Score = 359 bits (181), Expect = 2e-097
Identities = 267/295 (90%), Gaps = 3/295 (1%)
Strand = Plus / Plus
Query: 176 aggcccacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcag 235
||||| ||||| ||||||||||||||||| |||||||||||| ||| ||||| ||||||
Sbjct: 1 aggccgacccattatcatgttctgcacgatgagataggtttctctgctgacgaaatgcag 60
Query: 236 gagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggtt 295
||||||||||||||||||||||| ||||| || || ||||| |||||||||||||| |||
Sbjct: 61 gagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcagtagtt 120
Query: 296 gctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggag 355
|||||| | |||||||||||||| ||||||||||||||| |||||||||||| ||| |||
Sbjct: 121 gctccaatctgctacgcccaccttgctgcagcccaggtgggcacgttcctgaaattcgag 180
Query: 356 gagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcct 415
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 181 gagatgtcagacacgtcctccagccag---ggagggcatacctcggcgggcagtgctccc 237
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 238 gtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 292
>gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 355 bits (179), Expect = 4e-096
Identities = 262/289 (90%), Gaps = 3/289 (1%)
Strand = Plus / Plus
Query: 182 acccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagttt 241
||||| ||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||
Sbjct: 4 acccattatcatgttctgcacgatgagataggtttctctgctgacgaaatgcaggagttt 63
Query: 242 gttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcca 301
||||||||||||||||| ||||| || |||||||| |||||||||||||| |||||||||
Sbjct: 64 gttcattcgctctcttatgtgtatcaaaggagcacaacagccatctcagtagttgctcca 123
Query: 302 gtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatg 361
| ||||| |||||||| ||||||||||||||| |||||||||||| ||| |||||||||
Sbjct: 124 atctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattcgaggagatg 183
Query: 362 tcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccg 421
|||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 184 tcagacacgtcctccagccag---ggagggcatacctcggcgggcagtgctcccgtgccg 240
Query: 422 gagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 241 gagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 289
>gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 337 bits (170), Expect = 9e-091
Identities = 250/276 (90%), Gaps = 3/276 (1%)
Strand = Plus / Plus
Query: 195 ttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcgctct 254
|||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct: 1 ttctgcacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctct 60
Query: 255 cttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctacgccc 314
|||| ||||| || || ||||| |||||||||||||| ||||||||| | ||||||||||
Sbjct: 61 cttatgtgtatcaaagaagcacaacagccatctcagtagttgctccaatctgctacgccc 120
Query: 315 acctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcct 374
|||| ||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 121 accttgctgcagcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcct 180
Query: 375 ccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcc 434
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 181 ccagccag---ggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcc 237
Query: 435 tgcatgacaaagtcaggagctccatgttcttctgct 470
||||||| ||||| ||||| ||||||||||||||||
Sbjct: 238 tgcatgagaaagtgaggagttccatgttcttctgct 273
>gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_F09_A011 3', mRNA sequence
Length = 585
Score = 323 bits (163), Expect = 1e-086
Identities = 240/265 (90%), Gaps = 3/265 (1%)
Strand = Plus / Plus
Query: 206 gagataggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtac 265
|||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 3 gagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgtat 62
Query: 266 cagaggagcacgacagccatctcagtggttgctccagtgtgctacgcccacctcgctgca 325
|| |||||||| |||||||||||||| ||||||||| | ||||| |||||||| ||||||
Sbjct: 63 caaaggagcacaacagccatctcagtagttgctccaatctgctatgcccaccttgctgca 122
Query: 326 gcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcctccagccaggga 385
||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 123 gcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagccag--- 179
Query: 386 ggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaa 445
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 180 ggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaa 239
Query: 446 gtcaggagctccatgttcttctgct 470
|| ||||| ||||||||||||||||
Sbjct: 240 gtgaggagttccatgttcttctgct 264
>gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 360
Score = 315 bits (159), Expect = 3e-084
Identities = 239/265 (90%), Gaps = 3/265 (1%)
Strand = Plus / Plus
Query: 206 gagataggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtac 265
|||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 10 gagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgtat 69
Query: 266 cagaggagcacgacagccatctcagtggttgctccagtgtgctacgcccacctcgctgca 325
|| || ||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||
Sbjct: 70 caaagaagcacaacagccatctcagtagttgctccaatctgctacgcccaccttgctgca 129
Query: 326 gcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcctccagccaggga 385
||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 130 gcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagccag--- 186
Query: 386 ggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaa 445
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 187 ggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaa 246
Query: 446 gtcaggagctccatgttcttctgct 470
|| ||||| || |||||||||||||
Sbjct: 247 gtgaggagttcgatgttcttctgct 271
>gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 324
Score = 311 bits (157), Expect = 5e-083
Identities = 225/247 (91%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 224 gacgagatgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagcc 283
||||| ||||||||||||||||||||||||||||| ||||| || || ||||| ||||||
Sbjct: 10 gacgaaatgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagcc 69
Query: 284 atctcagtggttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttc 343
|||||||| ||||||||| | |||||||||||||| ||||||||||||||| ||||||||
Sbjct: 70 atctcagtagttgctccaatctgctacgcccaccttgctgcagcccaggtgggcacgttc 129
Query: 344 ctgagattggaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggct 403
|||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 130 ctgaaattcgaggagatgtcagacacgtcctccagccag---ggagggcatacctcggcg 186
Query: 404 ggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttc 463
||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 187 ggcagtgctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttc 246
Query: 464 ttctgct 470
|||||||
Sbjct: 247 ttctgct 253
>gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 485
Score = 283 bits (143), Expect = 1e-074
Identities = 212/235 (90%), Gaps = 3/235 (1%)
Strand = Plus / Plus
Query: 236 gagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggtt 295
|||| |||||||||||||||||| ||||| || || ||||| |||||||||||||| |||
Sbjct: 1 gagtntgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcagtagtt 60
Query: 296 gctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggag 355
|||||| | |||||||||||||| |||||||| |||||| |||||||||||| ||| |||
Sbjct: 61 gctccaatctgctacgcccaccttgctgcagcncaggtgggcacgttcctgaaattcgag 120
Query: 356 gagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcct 415
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 121 gagatgtcagacacgtcctccagccag---ggagggcatacctcggcgggcagtgctccc 177
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 178 gtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 232
>gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 264 bits (133), Expect = 1e-068
Identities = 214/239 (89%), Gaps = 4/239 (1%)
Strand = Plus / Plus
Query: 224 gacgagatgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagcc 283
||||| ||||||||||||||||||||||||||||| ||| | || |||||||| ||||||
Sbjct: 8 gacgaaatgcaggagtttgttcattcgctctcttatgtg-atcaaaggagcacaacagcc 66
Query: 284 atctcagtggttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttc 343
|| ||||| ||||||||| | ||||| |||||||| ||||||||||||||| ||||||||
Sbjct: 67 atttcagtagttgctccaatttgctatgcccaccttgctgcagcccaggtgggcacgttc 126
Query: 344 ctgagattggaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggct 403
|||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 127 ctgaaattcgaggagatgtcagacacgtcctccagccag---ggagggcatacctcggcg 183
Query: 404 ggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgtt 462
||||||||||| ||||||||||||||| |||||||||| ||||| ||||| ||||||||
Sbjct: 184 ggcagtgctcccgtgccggagctgccttgcctgcatgagaaagtgaggagttccatgtt 242
>gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891763, DNA
sequence
Length = 743
Score = 222 bits (112), Expect = 4e-056
Identities = 162/178 (91%), Gaps = 3/178 (1%)
Strand = Plus / Plus
Query: 293 gttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattg 352
||||||||| | ||||| |||||||| ||||||||||||||| |||||||||||| |||
Sbjct: 303 gttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattc 362
Query: 353 gaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgct 412
||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 363 gaggagatgtcagacacgtcctccagccagggag---ggcatacctcggcgggcagtgct 419
Query: 413 cctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 420 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 477
Score = 109 bits (55), Expect = 4e-022
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 182 acccactatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagttt 241
||||| ||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||
Sbjct: 3 acccattatcatgttctgcacgatgagataggtttctctgctgacgaaatgcaggagttt 62
Query: 242 gttcattcgctctcttacgtgta 264
||||||||||||||||| |||||
Sbjct: 63 gttcattcgctctcttatgtgta 85
>gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 700
Score = 222 bits (112), Expect = 4e-056
Identities = 162/178 (91%), Gaps = 3/178 (1%)
Strand = Plus / Minus
Query: 293 gttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattg 352
||||||||| | ||||| |||||||| ||||||||||||||| |||||||||||| |||
Sbjct: 503 gttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattc 444
Query: 353 gaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgct 412
||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 443 gaggagatgtcagacacgtcctccagccagggagg---gcatacctcggcgggcagtgct 387
Query: 413 cctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 386 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 329
>gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945316, DNA
sequence
Length = 625
Score = 222 bits (112), Expect = 4e-056
Identities = 162/178 (91%), Gaps = 3/178 (1%)
Strand = Plus / Minus
Query: 293 gttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattg 352
||||||||| | ||||| |||||||| ||||||||||||||| |||||||||||| |||
Sbjct: 377 gttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattc 318
Query: 353 gaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgct 412
||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 317 gaggagatgtcagacacgtcctccagccagggagg---gcatacctcggcgggcagtgct 261
Query: 413 cctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 260 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 203
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 234 aggagtttgttcattcgctctcttacgtgta 264
||||||||||||||||||||||||| |||||
Sbjct: 625 aggagtttgttcattcgctctcttatgtgta 595
>gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154280, DNA
sequence
Length = 692
Score = 222 bits (112), Expect = 4e-056
Identities = 162/178 (91%), Gaps = 3/178 (1%)
Strand = Plus / Plus
Query: 293 gttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattg 352
||||||||| | ||||| |||||||| ||||||||||||||| |||||||||||| |||
Sbjct: 395 gttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattc 454
Query: 353 gaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgct 412
||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 455 gaggagatgtcagacacgtcctccagccagggag---ggcatacctcggcgggcagtgct 511
Query: 413 cctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 512 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 569
Score = 131 bits (66), Expect = 1e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgac 226
|||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| |||
Sbjct: 80 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 139
Query: 227 gagatgcaggagtttgttcattcgctctcttacgtgta 264
|| ||||||||||||||||||||||||||||| |||||
Sbjct: 140 gaaatgcaggagtttgttcattcgctctcttatgtgta 177
>gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780894, DNA
sequence
Length = 674
Score = 214 bits (108), Expect = 9e-054
Identities = 152/166 (91%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 305 tgctacgcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtca 364
||||| |||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 11 tgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattcgaggagatgtca 70
Query: 365 gacgcgtcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggag 424
||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 71 gacacgtcctccagccagggag---ggcatacctcggcgggcagtgctcccgtgccggag 127
Query: 425 ctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 128 ctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 173
>gb|CF757039.1|CF757039 DSAF1_12_H07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_12_H07_A011 3', mRNA sequence
Length = 465
Score = 186 bits (94), Expect = 2e-045
Identities = 135/148 (91%), Gaps = 3/148 (2%)
Strand = Plus / Plus
Query: 323 gcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcctccagccag 382
|||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 1 gcagcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagccag 60
Query: 383 ggaggagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgac 442
|||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 61 ggag---ggcatacctcggcgggcagtgctcccgtgccggagttgcctcgcctgcatgag 117
Query: 443 aaagtcaggagctccatgttcttctgct 470
||||| ||||| ||||||||||||||||
Sbjct: 118 aaagtgaggagttccatgttcttctgct 145
>gb|BF656320.1|BF656320 FM1_49_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 427
Score = 178 bits (90), Expect = 5e-043
Identities = 131/144 (90%), Gaps = 3/144 (2%)
Strand = Plus / Plus
Query: 327 cccaggtgagcacgttcctgagattggaggagatgtcagacgcgtcctccagccagggag 386
|||||||| |||||||| ||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct: 1 cccaggtgggcacgttcttgaaatttgaggagatgtcagacacgtcctccagccagggag 60
Query: 387 gagggcatacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaag 446
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 61 ---ggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaag 117
Query: 447 tcaggagctccatgttcttctgct 470
| ||||| ||||||||||||||||
Sbjct: 118 tgaggagttccatgttcttctgct 141
>gb|CW280850.1|CW280850 104_756_11407852_116_35452_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407852, DNA
sequence
Length = 525
Score = 172 bits (87), Expect = 3e-041
Identities = 122/133 (91%), Gaps = 3/133 (2%)
Strand = Plus / Plus
Query: 338 acgttcctgagattggaggagatgtcagacgcgtcctccagccagggaggagggcatacc 397
|||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 1 acgttcctgaaattcgaggagatgtcagacacgtcctccagccagggagg---gcatacc 57
Query: 398 tcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctcc 457
||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 58 tcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttcc 117
Query: 458 atgttcttctgct 470
|||||||||||||
Sbjct: 118 atgttcttctgct 130
>gb|CL153693.1|CL153693 104_338_10780894_116_31370_142 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780894, DNA
sequence
Length = 710
Score = 157 bits (79), Expect = 2e-036
Identities = 108/117 (92%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 354 aggagatgtcagacgcgtcctccagccagggaggagggcatacctcggctggcagtgctc 413
|||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 710 aggagatgtcagacacgtcctccagccagggagg---gcatacctcggcgggcagtgctc 654
Query: 414 ctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 653 ccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgct 597
>gb|CW041428.1|CW041428 104_274_10506544_116_30434 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 715
Score = 149 bits (75), Expect = 4e-034
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 19 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagttttt 78
Query: 61 tcagacggcatcaccagacaatgttcttcc 90
|||||| | |||||||||||||||||||||
Sbjct: 79 tcagaccggatcaccagacaatgttcttcc 108
Score = 131 bits (66), Expect = 1e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgac 226
|||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| |||
Sbjct: 406 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 465
Query: 227 gagatgcaggagtttgttcattcgctctcttacgtgta 264
|| ||||||||||||||||||||||||||||| |||||
Sbjct: 466 gaaatgcaggagtttgttcattcgctctcttatgtgta 503
Score = 119 bits (60), Expect = 4e-025
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 92 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 151
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 211 ggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgca 270
Query: 152 catgctgggatgattg 167
||||||||||||||||
Sbjct: 271 catgctgggatgattg 286
>gb|CW041429.1|CW041429 104_274_10506544_116_30484 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 679
Score = 149 bits (75), Expect = 4e-034
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 19 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagttttt 78
Query: 61 tcagacggcatcaccagacaatgttcttcc 90
|||||| | |||||||||||||||||||||
Sbjct: 79 tcagaccggatcaccagacaatgttcttcc 108
Score = 131 bits (66), Expect = 1e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgac 226
|||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| |||
Sbjct: 406 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 465
Query: 227 gagatgcaggagtttgttcattcgctctcttacgtgta 264
|| ||||||||||||||||||||||||||||| |||||
Sbjct: 466 gaaatgcaggagtttgttcattcgctctcttatgtgta 503
Score = 119 bits (60), Expect = 4e-025
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 92 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 151
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 211 ggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgca 270
Query: 152 catgctgggatgattg 167
||||||||||||||||
Sbjct: 271 catgctgggatgattg 286
>gb|CW083677.1|CW083677 104_426_10945316_116_32439_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945316, DNA
sequence
Length = 425
Score = 149 bits (75), Expect = 4e-034
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 41 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagttttt 100
Query: 61 tcagacggcatcaccagacaatgttcttcc 90
|||||| | |||||||||||||||||||||
Sbjct: 101 tcagaccggatcaccagacaatgttcttcc 130
Score = 119 bits (60), Expect = 4e-025
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 92 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 151
|||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 233 ggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgca 292
Query: 152 catgctgggatgattg 167
||||||||||||||||
Sbjct: 293 catgctgggatgattg 308
>gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 656
Score = 149 bits (75), Expect = 4e-034
Identities = 177/211 (83%)
Strand = Plus / Plus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 14 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 73
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
| |||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||
Sbjct: 74 cgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgaga 133
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 134 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 193
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 194 ggagcacaacagccatatcagttgttgctcc 224
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 313 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 372
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 373 agctcgatgttcttctgct 391
>gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 677
Score = 149 bits (75), Expect = 4e-034
Identities = 177/211 (83%)
Strand = Plus / Plus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 15 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 74
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 75 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 134
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 135 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 194
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 195 ggagcacaacagccatatcagttgttgctcc 225
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 314 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 373
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 374 agctcgatgttcttttgct 392
>gb|BG465193.1|BG465193 EM1_73_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 373
Score = 149 bits (75), Expect = 4e-034
Identities = 111/121 (91%), Gaps = 4/121 (3%)
Strand = Plus / Plus
Query: 351 tggaggagatgtcagacgcgtcctcc-agccagggaggagggcatacctcggctggcagt 409
||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||
Sbjct: 1 tggaggagatgtcagacacgtcctcccagccagggagg---gcatacctcggcgggcagt 57
Query: 410 gctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgc 469
||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 58 gctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgc 117
Query: 470 t 470
|
Sbjct: 118 t 118
>gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 149 bits (75), Expect = 4e-034
Identities = 177/211 (83%)
Strand = Plus / Plus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 61 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 120
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 121 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 180
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 181 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 240
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 241 ggagcacaacagccatatcagttgttgctcc 271
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 360 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 419
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 420 agctcgatgttcttttgct 438
>gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 149 bits (75), Expect = 4e-034
Identities = 177/211 (83%)
Strand = Plus / Plus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 28 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 87
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 88 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 147
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 148 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 207
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 208 ggagcacaacagccatatcagttgttgctcc 238
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 327 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 386
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 387 agctcgatgttcttttgct 405
>gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_B05_A002 3', mRNA sequence
Length = 683
Score = 149 bits (75), Expect = 4e-034
Identities = 177/211 (83%)
Strand = Plus / Plus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 106 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 165
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 166 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 225
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 226 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 285
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 286 ggagcacaacagccatatcagttgttgctcc 316
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 405 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 464
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 465 agctcgatgttcttttgct 483
>gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 5', mRNA sequence
Length = 723
Score = 149 bits (75), Expect = 4e-034
Identities = 177/211 (83%)
Strand = Plus / Plus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 451 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 510
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 511 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 570
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 571 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 630
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 631 ggagcacaacagccatatcagttgttgctcc 661
>gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 871
Score = 149 bits (75), Expect = 4e-034
Identities = 177/211 (83%)
Strand = Plus / Minus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 708 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 649
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
| |||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||
Sbjct: 648 cgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgaga 589
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 588 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 529
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 528 ggagcacaacagccatatcagttgttgctcc 498
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 409 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 350
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 349 agctcgatgttcttctgct 331
>gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 646
Score = 141 bits (71), Expect = 1e-031
Identities = 161/191 (84%)
Strand = Plus / Plus
Query: 110 aaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgga 169
|||||||| ||||| | |||||| ||||||||||||||| |||||||||| ||||| ||
Sbjct: 4 aaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatcggg 63
Query: 170 acaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgacgag 229
|| || ||||| || || |||||| | ||||| || |||||||| |||||| | || ||
Sbjct: 64 actacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgatgat 123
Query: 230 atgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctca 289
|||||||| | || ||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 124 ctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatca 183
Query: 290 gtggttgctcc 300
|| ||||||||
Sbjct: 184 gttgttgctcc 194
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 283 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 342
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 343 agctcgatgttcttttgct 361
>gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 141 bits (71), Expect = 1e-031
Identities = 161/191 (84%)
Strand = Plus / Plus
Query: 110 aaagtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattgga 169
|||||||| ||||| | |||||| ||||||||||||||| |||||||||| ||||| ||
Sbjct: 7 aaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatcggg 66
Query: 170 acaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgacgag 229
|| || ||||| || || |||||| | ||||| || |||||||| |||||| | || ||
Sbjct: 67 actacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgatgat 126
Query: 230 atgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctca 289
|||||||| | || ||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 127 ctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatca 186
Query: 290 gtggttgctcc 300
|| ||||||||
Sbjct: 187 gttgttgctcc 197
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 286 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 345
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 346 agctcgatgttcttttgct 364
>gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 3', mRNA sequence
Length = 733
Score = 141 bits (71), Expect = 1e-031
Identities = 176/211 (83%)
Strand = Plus / Plus
Query: 90 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 149
|||||||||| ||||| | |||||||| ||||| | |||||| |||||||||||||||
Sbjct: 39 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 98
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 99 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 158
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || |||||||| |||||||||||||| |
Sbjct: 159 taggcttcaatcctgatgatctgcaggagctggtgcattcgctttcttacgtgtaccaaa 218
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 219 ggagcacaacagccatatcagttgttgctcc 249
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 437 catgacaaagtcaggagctccatgttcttctgct 470
||||| |||||||||||||| |||||||| ||||
Sbjct: 383 catgagaaagtcaggagctcgatgttcttttgct 416
>gb|CW382183.1|CW382183 fsbb001f063p06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063p06, DNA
sequence
Length = 429
Score = 131 bits (66), Expect = 1e-028
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 167 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgac 226
|||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||| |||
Sbjct: 92 ggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgac 151
Query: 227 gagatgcaggagtttgttcattcgctctcttacgtgta 264
|| ||||||||||||||||||||||||||||| |||||
Sbjct: 152 gaaatgcaggagtttgttcattcgctctcttatgtgta 189
>gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 635
Score = 131 bits (66), Expect = 1e-028
Identities = 147/174 (84%)
Strand = Plus / Plus
Query: 127 gaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccaccca 186
|||||| ||||||||||||||| | |||||||| ||||| || || || ||||| || ||
Sbjct: 15 gaactttgacttctacatgtgttcgcatgctggaatgatcgggactacgaggccaactca 74
Query: 187 ctatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttca 246
|||||| ||||||| || |||||||| |||||| | || || |||||||| | || ||
Sbjct: 75 ttatcatattctgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgca 134
Query: 247 ttcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 135 ttcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 188
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 277 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 336
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 337 agctcgatgttcttctgct 355
>gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 3', mRNA sequence
Length = 638
Score = 131 bits (66), Expect = 1e-028
Identities = 147/174 (84%)
Strand = Plus / Plus
Query: 127 gaacttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccaccca 186
|||||| ||||||||||||||| |||||||||| ||||| || || || ||||| || ||
Sbjct: 8 gaactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggccaactca 67
Query: 187 ctatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttca 246
|||||| | ||||| || |||||||| |||||| | || || |||||||| | || ||
Sbjct: 68 ttatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgca 127
Query: 247 ttcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 128 ttcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 181
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 270 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 329
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 330 agctcgatgttcttttgct 348
>gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 651
Score = 129 bits (65), Expect = 4e-028
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 113 gtttgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaaca 172
||||| ||||| | |||||| ||||||||||||||| | ||||||| ||||| || ||
Sbjct: 1 gtttgtcatccaaggaactttgacttctacatgtgttcgcatgctgnaatgatcgggact 60
Query: 173 acaaggcccacccactatcatgttctgcacgacgagataggtttcaatgccgacgagatg 232
|| ||||| || || |||||| ||||||| || |||||||| |||||| | || || ||
Sbjct: 61 acgaggccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatctg 120
Query: 233 caggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtg 292
|||||| | || ||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 121 caggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagtt 180
Query: 293 gttgctcc 300
||||||||
Sbjct: 181 gttgctcc 188
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 277 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 336
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 337 agctcgatgttcttctgct 355
>gb|CW272375.1|CW272375 104_744_11403400_148_36227_054 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11403400, DNA sequence
Length = 709
Score = 121 bits (61), Expect = 1e-025
Identities = 72/76 (94%)
Strand = Plus / Minus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 76 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagttttt 17
Query: 61 tcagacggcatcacca 76
|||||| | |||||||
Sbjct: 16 tcagaccggatcacca 1
>gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 5', mRNA sequence
Length = 599
Score = 107 bits (54), Expect = 1e-021
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccnccacaccaagtt 57
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 538 gaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaagtt 594
>gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 634
Score = 105 bits (53), Expect = 6e-021
Identities = 125/149 (83%)
Strand = Plus / Plus
Query: 152 catgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgagata 211
|||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||||
Sbjct: 7 catgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgagata 66
Query: 212 ggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccagagg 271
|| |||||| | || || |||||||| | || ||||||||||||||||||||||| |||
Sbjct: 67 ggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaagg 126
Query: 272 agcacgacagccatctcagtggttgctcc 300
||||| |||||||| ||||| ||||||||
Sbjct: 127 agcacaacagccatatcagttgttgctcc 155
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 244 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 303
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 304 agctcgatgttcttctgct 322
>gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 105 bits (53), Expect = 6e-021
Identities = 125/149 (83%)
Strand = Plus / Plus
Query: 152 catgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgagata 211
|||||||| ||||| || || || ||||| || || |||||| ||||||| || ||||||
Sbjct: 9 catgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgagata 68
Query: 212 ggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccagagg 271
|| |||||| | || || |||||||| | || ||||||||||||||||||||||| |||
Sbjct: 69 ggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaagg 128
Query: 272 agcacgacagccatctcagtggttgctcc 300
||||| |||||||| ||||| ||||||||
Sbjct: 129 agcacaacagccatatcagttgttgctcc 157
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 246 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 305
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 306 agctcgatgttcttctgct 324
>gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 631
Score = 101 bits (51), Expect = 9e-020
Identities = 126/151 (83%)
Strand = Plus / Plus
Query: 150 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 209
|||||||||| ||||| || || || ||||| || || |||||| | ||||| || ||||
Sbjct: 2 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 61
Query: 210 taggtttcaatgccgacgagatgcaggagtttgttcattcgctctcttacgtgtaccaga 269
|||| |||||| | || || |||||||| | || ||||||||||||||||||||||| |
Sbjct: 62 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 121
Query: 270 ggagcacgacagccatctcagtggttgctcc 300
||||||| |||||||| ||||| ||||||||
Sbjct: 122 ggagcacaacagccatatcagttgttgctcc 152
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 241 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 300
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 301 agctcgatgttcttttgct 319
>gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 609
Score = 97.6 bits (49), Expect = 1e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 188 tatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcat 247
|||||| ||||||| || |||||||| |||||| | || || |||||||| | || |||
Sbjct: 18 tatcatattctgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgcat 77
Query: 248 tcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|||||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 78 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 130
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 219 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 278
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 279 agctcgatgttcttctgct 297
>gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 89.7 bits (45), Expect = 3e-016
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 188 tatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcat 247
|||||| | ||||| || |||||||| |||||| | || || |||||||| | || |||
Sbjct: 8 tatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgcat 67
Query: 248 tcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|||||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 68 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 120
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 209 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 268
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 269 agctcgatgttcttttgct 287
>gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 680
Score = 89.7 bits (45), Expect = 3e-016
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 188 tatcatgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcat 247
|||||| | ||||| || |||||||| |||||| | || || |||||||| | || |||
Sbjct: 89 tatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgcat 148
Query: 248 tcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcc 300
|||||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 149 tcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctcc 201
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 290 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 349
Query: 452 agctccatgttcttctgct 470
||||| |||||||| ||||
Sbjct: 350 agctcgatgttcttttgct 368
>gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 83.8 bits (42), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
|||||||| | || ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 27 tgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcag 86
Query: 291 tggttgctcc 300
| ||||||||
Sbjct: 87 ttgttgctcc 96
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 185 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 244
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 245 agctcgatgttcttctgct 263
>gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 522
Score = 83.8 bits (42), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
|||||||| | || ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 2 tgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcag 61
Query: 291 tggttgctcc 300
| ||||||||
Sbjct: 62 ttgttgctcc 71
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 392 catacctcggctggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcagg 451
||||| ||||| ||||| | ||||| | |||||| ||||| || ||||| |||||||||
Sbjct: 160 catacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagg 219
Query: 452 agctccatgttcttctgct 470
||||| |||||||||||||
Sbjct: 220 agctcgatgttcttctgct 238
>gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 193
Score = 75.8 bits (38), Expect = 5e-012
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
|||||||| | || |||||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 2 tgcaggagctggtgcattcgctatcttacgtgtaccaaaggagcacaacagccatatcag 61
Query: 291 tggttgctcc 300
| ||||||||
Sbjct: 62 ttgttgctcc 71
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 197,139
Number of Sequences: 832831
Number of extensions: 197139
Number of successful extensions: 54993
Number of sequences better than 0.5: 76
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 54827
Number of HSP's gapped (non-prelim): 146
length of query: 744
length of database: 491,359,669
effective HSP length: 20
effective length of query: 724
effective length of database: 474,703,049
effective search space: 343685007476
effective search space used: 343685007476
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)