BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.12
(694 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW188377.1|CW188377 104_608_11172997_148_36734_061 Sorgh... 682 0.0
gb|CW183462.1|CW183462 104_599_11164629_148_36672_089 Sorgh... 672 0.0
gb|CD464058.1|CD464058 ETH1_48_H05.b1_A002 Ethylene-treated... 652 0.0
gb|CW191309.1|CW191309 104_613_11178426_116_36942_075 Sorgh... 632 e-179
gb|BE599532.1|BE599532 PI1_88_F07.b1_A002 Pathogen induced ... 597 e-169
gb|AI724175.1|AI724175 RHIZ1_8_A04.y2_A001 Rhizome1 (RHIZ1)... 549 e-154
gb|CW319235.1|CW319235 104_811_11474377_148_35884_003 Sorgh... 519 e-145
gb|CW417908.1|CW417908 fsbb001f121c05f0 Sorghum methylation... 519 e-145
gb|BE355360.1|BE355360 DG1_114_A03.b1_A002 Dark Grown 1 (DG... 519 e-145
gb|BG488416.1|BG488416 RHIZ2_63_D10.b1_A003 Rhizome2 (RHIZ2... 505 e-141
gb|BG240440.1|BG240440 OV1_30_A12.b1_A002 Ovary 1 (OV1) Sor... 498 e-139
gb|BE599367.1|BE599367 PI1_88_F07.g1_A002 Pathogen induced ... 488 e-136
gb|AW680031.1|AW680031 WS1_34_A02.g1_A002 Water-stressed 1 ... 480 e-134
gb|AW745446.1|AW745446 WS1_34_A02.b1_A002 Water-stressed 1 ... 480 e-134
gb|BE355526.1|BE355526 DG1_114_A03.g1_A002 Dark Grown 1 (DG... 480 e-134
gb|BG410872.1|BG410872 EM1_27_A01.g1_A002 Embryo 1 (EM1) So... 480 e-134
gb|BG411209.1|BG411209 EM1_27_A01.b1_A002 Embryo 1 (EM1) So... 480 e-134
gb|BE917707.1|BE917707 OV1_6_B04.b1_A002 Ovary 1 (OV1) Sorg... 476 e-132
gb|BF704683.1|BF704683 FM1_50_B08.b1_A003 Floral-Induced Me... 474 e-132
gb|BG048803.1|BG048803 OV1_23_C04.b1_A002 Ovary 1 (OV1) Sor... 472 e-131
gb|BE592516.1|BE592516 WS1_94_A05.b1_A002 Water-stressed 1 ... 464 e-129
gb|CW128767.1|CW128767 104_510_11114194_148_34755_039 Sorgh... 458 e-127
gb|BG488106.1|BG488106 RHIZ2_63_D10.g1_A003 Rhizome2 (RHIZ2... 454 e-126
gb|BE917630.1|BE917630 OV1_6_B04.g1_A002 Ovary 1 (OV1) Sorg... 452 e-125
gb|AW564395.1|AW564395 LG1_292_F12.b1_A002 Light Grown 1 (L... 450 e-125
gb|BE593143.1|BE593143 WS1_98_A10.g1_A002 Water-stressed 1 ... 450 e-125
gb|CD431873.1|CD431873 ETH1_11_A02.g1_A002 Ethylene-treated... 450 e-125
gb|CN150853.1|CN150853 WOUND1_71_G11.g1_A002 Wounded leaves... 450 e-125
gb|CN126047.1|CN126047 RHOH1_14_H01.g1_A002 Acid- and alkal... 442 e-122
gb|CX608442.1|CX608442 ANR1_38_D08.g1_A002 Anaerobic roots ... 442 e-122
gb|CW112587.1|CW112587 104_486_11104970_116_34548_007 Sorgh... 440 e-122
gb|BE592378.1|BE592378 WS1_94_A05.g1_A002 Water-stressed 1 ... 436 e-120
gb|BE355445.1|BE355445 DG1_114_A03.b2_A002 Dark Grown 1 (DG... 432 e-119
gb|CW129063.1|CW129063 104_511_11114353_148_34760_015 Sorgh... 422 e-116
gb|CF071274.1|CF071274 FE1_16_D02.g1_A002 Iron-deficient se... 420 e-116
gb|BE593453.1|BE593453 WS1_98_A10.b1_A002 Water-stressed 1 ... 414 e-114
gb|BF481909.1|BF481909 FM1_22_H04.g1_A003 Floral-Induced Me... 414 e-114
gb|BG102543.1|BG102543 RHIZ2_34_D04.g1_A003 Rhizome2 (RHIZ2... 414 e-114
gb|BF656458.1|BF656458 FM1_50_B08.g1_A003 Floral-Induced Me... 410 e-113
gb|CN125957.1|CN125957 RHOH1_14_H01.b1_A002 Acid- and alkal... 406 e-111
gb|CW463246.1|CW463246 fsbb001f211m02f0 Sorghum methylation... 404 e-111
gb|CF071535.1|CF071535 FE1_17_C03.b1_A002 Iron-deficient se... 402 e-110
gb|CF072752.1|CF072752 FE1_25_E07.g1_A002 Iron-deficient se... 400 e-110
gb|BF482021.1|BF482021 FM1_22_H04.b1_A003 Floral-Induced Me... 396 e-108
gb|CW297850.1|CW297850 104_780_11462260_116_35647_012 Sorgh... 389 e-106
gb|CW361905.1|CW361905 fsbb001f030l13f0 Sorghum methylation... 387 e-105
gb|CW182557.1|CW182557 104_598_11164141_116_36663_061 Sorgh... 385 e-105
gb|BG052252.1|BG052252 RHIZ2_12_B05.g1_A003 Rhizome2 (RHIZ2... 385 e-105
gb|CW156116.1|CW156116 104_558_11146509_148_36368_081 Sorgh... 383 e-104
gb|AI723845.1|AI723845 RHIZ1_28_B06.y1_A001 Rhizome1 (RHIZ1... 381 e-104
gb|BG049237.1|BG049237 OV1_17_D01.g1_A002 Ovary 1 (OV1) Sor... 377 e-103
gb|BZ341857.1|BZ341857 ic79b05.g1 WGS-SbicolorF (JM107 adap... 369 e-100
gb|CL152064.1|CL152064 104_335_10779694_116_31364_094 Sorgh... 369 e-100
gb|CW155043.1|CW155043 104_557_11145924_116_36362_042 Sorgh... 369 e-100
gb|CW155044.1|CW155044 104_557_11145924_148_36361_042 Sorgh... 369 e-100
gb|BE357369.1|BE357369 DG1_148_A05.g1_A002 Dark Grown 1 (DG... 369 e-100
gb|BF480763.1|BF480763 FM1_14_F11.g1_A003 Floral-Induced Me... 369 e-100
gb|CD213618.1|CD213618 HS1_52_G12.b1_A012 Heat-shocked seed... 369 e-100
gb|CD213713.1|CD213713 HS1_52_G12.g1_A012 Heat-shocked seed... 369 e-100
gb|CD432572.1|CD432572 ETH1_30_E04.g1_A002 Ethylene-treated... 369 e-100
gb|CD462726.1|CD462726 ETH1_39_B03.g1_A002 Ethylene-treated... 369 e-100
gb|CX606979.1|CX606979 ANR1_6_B05.b1_A002 Anaerobic roots S... 369 e-100
gb|CX607063.1|CX607063 ANR1_6_B05.g1_A002 Anaerobic roots S... 369 e-100
gb|CX610420.1|CX610420 ANR1_18_D02.g1_A002 Anaerobic roots ... 369 e-100
gb|CW317075.1|CW317075 104_808_11473223_116_35851_084 Sorgh... 367 e-100
gb|CW410848.1|CW410848 fsbb001f105m09k0 Sorghum methylation... 361 6e-098
gb|CX607748.1|CX607748 ANR1_30_B07.g1_A002 Anaerobic roots ... 361 6e-098
gb|AI724242.1|AI724242 RHIZ1_8_B12.y2_A001 Rhizome1 (RHIZ1)... 359 2e-097
gb|CF431776.1|CF431776 NIT1_9_B03.b1_A002 Nitrogen-deficien... 357 9e-097
gb|CW410847.1|CW410847 fsbb001f105m09f0 Sorghum methylation... 355 3e-096
gb|CW306661.1|CW306661 104_792_11466961_148_35713_007 Sorgh... 349 2e-094
gb|CF484983.1|CF484983 POL1_28_F02.g1_A002 Pollen Sorghum b... 339 2e-091
gb|BF480894.1|BF480894 FM1_14_F11.b1_A003 Floral-Induced Me... 333 1e-089
gb|BG049096.1|BG049096 OV1_23_C04.g1_A002 Ovary 1 (OV1) Sor... 333 1e-089
gb|CX607662.1|CX607662 ANR1_30_B07.b1_A002 Anaerobic roots ... 329 2e-088
gb|CW490111.1|CW490111 fsbb001f275g08k0 Sorghum methylation... 327 8e-088
gb|CW070741.1|CW070741 104_322_10590964_114_30544 Sorghum m... 315 3e-084
gb|BF704815.1|BF704815 FM1_51_H04.b1_A003 Floral-Induced Me... 311 5e-083
gb|BG240054.1|BG240054 OV1_17_D01.b1_A002 Ovary 1 (OV1) Sor... 311 5e-083
gb|BG558204.1|BG558204 RHIZ2_64_D04.b1_A003 Rhizome2 (RHIZ2... 303 1e-080
gb|CF772707.1|CF772707 DSBF1_38_D05.g1_A010 Drought-stresse... 299 2e-079
gb|AW286565.1|AW286565 LG1_334_E01.g1_A002 Light Grown 1 (L... 297 7e-079
gb|BG052312.1|BG052312 RHIZ2_12_B05.b1_A003 Rhizome2 (RHIZ2... 295 3e-078
gb|BG102866.1|BG102866 RHIZ2_34_D04.b1_A003 Rhizome2 (RHIZ2... 295 3e-078
gb|CF431835.1|CF431835 NIT1_9_B03.g1_A002 Nitrogen-deficien... 291 4e-077
gb|CN150769.1|CN150769 WOUND1_71_G11.b1_A002 Wounded leaves... 278 6e-073
gb|CF074009.1|CF074009 FE1_9_D12.g1_A002 Iron-deficient see... 276 3e-072
gb|CW191310.1|CW191310 104_613_11178426_148_36941_075 Sorgh... 272 4e-071
gb|CW088567.1|CW088567 104_433_10948227_116_32575_006 Sorgh... 270 2e-070
gb|AW677105.1|AW677105 DG1_4_H07.b1_A002 Dark Grown 1 (DG1)... 268 6e-070
gb|CW182558.1|CW182558 104_598_11164141_148_36664_061 Sorgh... 262 4e-068
gb|CW227263.1|CW227263 104_665_11205321_148_37224_037 Sorgh... 252 4e-065
gb|AI724884.1|AI724884 RHIZ1_30_G03.y3_A001 Rhizome1 (RHIZ1... 246 2e-063
gb|CW105327.1|CW105327 104_474_11012845_116_34450_053 Sorgh... 240 1e-061
gb|CW105328.1|CW105328 104_474_11012845_148_34446_053 Sorgh... 240 1e-061
gb|CW394994.1|CW394994 fsbb001f082n15f0 Sorghum methylation... 240 1e-061
gb|CW432220.1|CW432220 fsbb001f146m24f0 Sorghum methylation... 240 1e-061
gb|CW306660.1|CW306660 104_792_11466961_116_35709_007 Sorgh... 234 9e-060
gb|CD431850.1|CD431850 ETH1_11_D10.g1_A002 Ethylene-treated... 232 3e-059
gb|CL159717.1|CL159717 104_349_10804465_114_31381_289 Sorgh... 222 3e-056
gb|CW238284.1|CW238284 104_695_11216646_148_37417_029 Sorgh... 218 5e-055
gb|CW104944.1|CW104944 104_474_11012677_148_34448_061 Sorgh... 216 2e-054
gb|BF656582.1|BF656582 FM1_51_H04.g1_A003 Floral-Induced Me... 186 2e-045
gb|CW088569.1|CW088569 104_433_10948227_251_32621_006 Sorgh... 184 7e-045
gb|CW344083.1|CW344083 104_846_11487770_116_36196_005 Sorgh... 170 1e-040
gb|CF430869.1|CF430869 NIT1_1_E01.b1_A002 Nitrogen-deficien... 165 7e-039
gb|BG560769.1|BG560769 RHIZ2_64_D04.g1_A003 Rhizome2 (RHIZ2... 161 1e-037
gb|CW415400.1|CW415400 fsbb001f115h21f0 Sorghum methylation... 159 4e-037
gb|AI723852.1|AI723852 RHIZ1_28_C06.y1_A001 Rhizome1 (RHIZ1... 153 3e-035
gb|CW424980.1|CW424980 fsbb001f135j06f0 Sorghum methylation... 151 1e-034
gb|CW394995.1|CW394995 fsbb001f082n15k0 Sorghum methylation... 149 4e-034
gb|CW070742.1|CW070742 104_322_10590964_116_30543 Sorghum m... 141 1e-031
gb|CW113300.1|CW113300 104_487_11105369_148_34551_071 Sorgh... 141 1e-031
gb|CW104943.1|CW104943 104_474_11012677_116_34452_061 Sorgh... 121 9e-026
gb|AI724525.1|AI724525 RHIZ1_37_E01.y1_A001 Rhizome1 (RHIZ1... 121 9e-026
gb|CL152063.1|CL152063 104_335_10779694_114_31363_094 Sorgh... 115 6e-024
gb|BE353104.1|BE353104 DG1_4_H07.g1_A002 Dark Grown 1 (DG1)... 101 8e-020
gb|CW049116.1|CW049116 104_288_10513836_114_30200 Sorghum m... 94 2e-017
gb|CW317076.1|CW317076 104_808_11473223_148_35855_084 Sorgh... 90 3e-016
gb|CW424981.1|CW424981 fsbb001f135j06k0 Sorghum methylation... 86 5e-015
gb|CW415401.1|CW415401 fsbb001f115h21k0 Sorghum methylation... 74 2e-011
gb|CF483259.1|CF483259 POL1_21_A09.b1_A002 Pollen Sorghum b... 72 7e-011
gb|CF434162.1|CF434162 NIT1_32_H03.g1_A002 Nitrogen-deficie... 70 3e-010
gb|CW105329.1|CW105329 104_474_11012845_148_34479_053 Sorgh... 68 1e-009
gb|BE358843.1|BE358843 DG1_32_D03.g1_A002 Dark Grown 1 (DG1... 64 2e-008
gb|CL179294.1|CL179294 104_388_10895213_148_31909_125 Sorgh... 52 7e-005
gb|AW282719.1|AW282719 LG1_292_F12.g1_A002 Light Grown 1 (L... 46 0.004
gb|BE357302.1|BE357302 DG1_148_A05.b1_A002 Dark Grown 1 (DG... 42 0.067
gb|BE358231.1|BE358231 DG1_26_E04.b2_A002 Dark Grown 1 (DG1... 40 0.26
gb|BM322408.1|BM322408 PIC1_4_D12.b1_A002 Pathogen-infected... 40 0.26
gb|CD228266.1|CD228266 CCC1_6_D03.g1_A007 Callus culture/ce... 40 0.26
gb|CD431824.1|CD431824 ETH1_11_A02.b1_A002 Ethylene-treated... 40 0.26
gb|CF485558.1|CF485558 POL1_32_F08.b1_A002 Pollen Sorghum b... 40 0.26
gb|CF486632.1|CF486632 POL1_38_G09.g1_A002 Pollen Sorghum b... 40 0.26
gb|CN125542.1|CN125542 RHOH1_11_E09.g1_A002 Acid- and alkal... 40 0.26
>gb|CW188377.1|CW188377 104_608_11172997_148_36734_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172997, DNA
sequence
Length = 707
Score = 682 bits (344), Expect = 0.0
Identities = 451/486 (92%), Gaps = 3/486 (0%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
|||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 559 aatctaagatgaggtgaacttggtgacggccttggtgccctcggagacggcgtgcttggc 500
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
|||||||||||| ||||| ||||| || || || || ||||||| ||||||||||||||
Sbjct: 499 gagctcgccggggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtggg 440
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct: 439 cttcttgttgtagcgcgcgagcttggcggcctcggcggcgagcttctcgaagatgtcgtt 380
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 379 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtcagggtgcacctg 320
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 319 cttgagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttctt 260
Query: 480 acccttcttgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
|||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||
Sbjct: 259 ccccttcttgtcgccgccttccttgccggccgacttgcccgccgggaggcgcttctccgc 200
Query: 540 cttgggcttcttccccgccggggccttcgcggcagcgggctcctcct---ccgctggctt 596
|||||||||||||||||||||||||||| |||| ||||||||||||| |||| |||||
Sbjct: 199 cttgggcttcttccccgccggggccttctcggccgcgggctcctcctccgccgcgggctt 140
Query: 597 cttcgcagccggcttcttctccgccttgggcgccatcgatgcggctgctggggtttcgcg 656
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 139 cttcgccgccggcttcttctccgccttgggagccatcgatgcggctcctggggtttcgcg 80
Query: 657 gtggtg 662
||||||
Sbjct: 79 gtggtg 74
>gb|CW183462.1|CW183462 104_599_11164629_148_36672_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164629, DNA
sequence
Length = 693
Score = 672 bits (339), Expect = 0.0
Identities = 472/516 (91%), Gaps = 4/516 (0%)
Strand = Plus / Minus
Query: 149 ctaccaacgccacccaatagctactacctcaaatctaagatgatgtgaacttagtgacgg 208
|||||||||||||||| |||||||| || | || ||||||||| |||||||| || ||||
Sbjct: 542 ctaccaacgccacccagtagctactgccaccaacctaagatgaggtgaacttggtaacgg 483
Query: 209 ccttggtgccctcagagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacag 268
||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || |
Sbjct: 482 ccttggtgccctcggagacggcgtgcttggcgagctcgccggggaggacgaggcggacgg 423
Query: 269 aggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcag 328
|||| || ||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 422 aggtctggatctccctggaggtgatggtgggctttttgttgtagcgcgcgagcttggcgg 363
Query: 329 cctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggcct 388
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 362 cttcgccggcgagcttctcgaagatatcgttgatgaaggaattcatgatggacatggcct 303
Query: 389 tggaagagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgt 448
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tggaggagatgccggtgtcggggtggacctgcttcagcaccttgaagatgtagatcttgt 243
Query: 449 aggtctccaccgacttcttcgccttcttcttacccttcttgtcgccgccttctttgccgg 508
||||||||||||||||||| ||||||||||| |||||||||||||| || || |||||||
Sbjct: 242 aggtctccaccgacttcttagccttcttcttgcccttcttgtcgcccccctccttgccgg 183
Query: 509 acgacttggccgccgggaggcgcttctcggccttgggcttcttccccgccggggccttcg 568
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 182 ccgacttgcccgccgggaggcgcttctccgccttgggcttcttccccgccggcgccttct 123
Query: 569 cggcagcgggctcctcctccgctggcttcttcgcagccggcttcttctccgccttgggcg 628
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 122 cggccgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggcg 63
Query: 629 cc----atcgatgcggctgctggggtttcgcggtgg 660
|| || |||||||||||||||||||||||||||
Sbjct: 62 ccatggatggatgcggctgctggggtttcgcggtgg 27
>gb|CD464058.1|CD464058 ETH1_48_H05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_H05_A002 3', mRNA sequence
Length = 746
Score = 652 bits (329), Expect = 0.0
Identities = 449/489 (91%)
Strand = Plus / Minus
Query: 149 ctaccaacgccacccaatagctactacctcaaatctaagatgatgtgaacttagtgacgg 208
|||||||||||||||| |||||||| || | || ||||||||| |||||||| || ||||
Sbjct: 502 ctaccaacgccacccagtagctactgccaccaacctaagatgaggtgaacttggtaacgg 443
Query: 209 ccttggtgccctcagagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacag 268
||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || |
Sbjct: 442 ccttggtgccctcggagacggcgtgcttggcgagctcgccggggaggacgaggcggacgg 383
Query: 269 aggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcag 328
|||| || ||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 382 aggtctggatctccctggaggtgatggtgggctttttgttgtagcgcgcgagcttggcgg 323
Query: 329 cctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggcct 388
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 322 cttcgccggcgagcttctcgaagatatcgttgatgaaggaattcatgatggacatggcct 263
Query: 389 tggaagagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgt 448
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tggaggagatgccggtgtcggggtggacctgcttcagcaccttgaagatgtagatcttgt 203
Query: 449 aggtctccaccgacttcttcgccttcttcttacccttcttgtcgccgccttctttgccgg 508
||||||||||||||||||| ||||||||||| |||||||||||||| || || |||||||
Sbjct: 202 aggtctccaccgacttcttagccttcttcttgcccttcttgtcgcccccctccttgccgg 143
Query: 509 acgacttggccgccgggaggcgcttctcggccttgggcttcttccccgccggggccttcg 568
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 142 ccgacttgcccgccgggaggcgcttctccgccttgggcttcttccccgccggcgccttct 83
Query: 569 cggcagcgggctcctcctccgctggcttcttcgcagccggcttcttctccgccttgggcg 628
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 82 cggccgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggcg 23
Query: 629 ccatcgatg 637
|||| ||||
Sbjct: 22 ccatggatg 14
>gb|CW191309.1|CW191309 104_613_11178426_116_36942_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178426, DNA
sequence
Length = 724
Score = 632 bits (319), Expect = e-179
Identities = 424/459 (92%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
|||||||||||| |||||||| || ||||||||||||||||| || || |||||||||||
Sbjct: 615 aatctaagatgaggtgaacttggtaacggccttggtgccctcggacacggcgtgcttggc 556
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
||||||||| || ||||| ||||| || || || || ||||||| ||||||||||||||
Sbjct: 555 gagctcgcctgggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtggg 496
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 495 cttcttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcgtt 436
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 435 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtgcacctg 376
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 375 cttgagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttctt 316
Query: 480 acccttcttgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||||||||||||| || ||||||| |||||| |||| |||||||||||||| ||
Sbjct: 315 gcccttcttgtcgccgccctccttgccggcagacttgcccgcggggaggcgcttctccgc 256
Query: 540 cttgggcttcttccccgccggggccttcgcggcagcgggctcctcctccgctggcttctt 599
|||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct: 255 cttgggcttcttccccgccggggccttctcggccgcgggctcctcctccgcgggcttctt 196
Query: 600 cgcagccggcttcttctccgccttgggcgccatcgatgc 638
||| |||||||||||||||||||||||||||||||||||
Sbjct: 195 cgccgccggcttcttctccgccttgggcgccatcgatgc 157
>gb|BE599532.1|BE599532 PI1_88_F07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 491
Score = 597 bits (301), Expect = e-169
Identities = 407/442 (92%), Gaps = 4/442 (0%)
Strand = Plus / Minus
Query: 223 gagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacagaggtttgaatctcc 282
||||| ||||||||||||||||||||||| ||||| ||||| || ||||| || ||||||
Sbjct: 490 gagacggcgtgcttggcgagctcgccggggaggacgaggcggacggaggtctggatctcc 431
Query: 283 cgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcagcctcgccggcgagc 342
| ||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||
Sbjct: 430 ctggaggtgatggtgggctttttgttgtagcgcgcgagcttggcggcttcgccggcgagc 371
Query: 343 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagagatgccg 402
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 370 ttctcgaagatatcgttgatgaaggaattcatgatggacatggccttggaggagatgccg 311
Query: 403 atgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctccaccgac 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctccaccgac 251
Query: 463 ttcttcgccttcttcttacccttcttgtcgccgccttctttgccggacgacttggccgcc 522
||||| ||||||||||| |||||||||||||| || || ||||||| ||||||| |||||
Sbjct: 250 ttcttagccttcttcttgcccttcttgtcgcccccctccttgccggccgacttgcccgcc 191
Query: 523 gggaggcgcttctcggccttgggcttcttccccgccggggccttcgcggcagcgggctcc 582
|||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct: 190 gggaggcgcttctccgccttgggcttcttccccgccggcgccttctcggccgcgggctcc 131
Query: 583 tcctccgctggcttcttcgcagccggcttcttctccgccttgggcgcc----atcgatgc 638
|||||||| ||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct: 130 tcctccgcgggcttcttcgccgccggcttcttctccgccttgggcgccatggatggatgc 71
Query: 639 ggctgctggggtttcgcggtgg 660
||||||||||||||||||||||
Sbjct: 70 ggctgctggggtttcgcggtgg 49
>gb|AI724175.1|AI724175 RHIZ1_8_A04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 509
Score = 549 bits (277), Expect = e-154
Identities = 364/393 (92%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
|||||||||||| |||||||| || ||||||||||||||||| || || |||||||||||
Sbjct: 394 aatctaagatgaggtgaacttggtaacggccttggtgccctcggacacggcgtgcttggc 335
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
||||||||| || ||||| ||||| || || || || ||||||| ||||||||||||||
Sbjct: 334 gagctcgcctgggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtggg 275
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 274 cttcttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcgtt 215
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 214 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtgcacctg 155
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 154 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttctt 95
Query: 480 acccttcttgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||| ||
Sbjct: 94 gcccttcttgtcgccgccctccttgccggccgacttgcccgccgggaggcgcttctccgc 35
Query: 540 cttgggcttcttccccgccggggccttcgcggc 572
|||||||||||||||||||||||||||| ||||
Sbjct: 34 cttgggcttcttccccgccggggccttctcggc 2
>gb|CW319235.1|CW319235 104_811_11474377_148_35884_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474377, DNA
sequence
Length = 704
Score = 519 bits (262), Expect = e-145
Identities = 413/464 (89%), Gaps = 12/464 (2%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 606 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 547
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 546 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 487
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||||||||| |||||||| | |||| | || |||||||||||||||||||||||
Sbjct: 486 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 427
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 426 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 367
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 366 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 307
Query: 483 cttcttg---tcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||| |||||||| || ||||||| |||||| |||| ||||| |||||||||||
Sbjct: 306 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 247
Query: 540 cttgggcttcttccccgccggggc---------cttcgcggcagcgggctcctcctccgc 590
|||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 246 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 187
Query: 591 tggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 186 gggcttcttcgccgccggcttcttctccgccttgggtgccatcg 143
>gb|CW417908.1|CW417908 fsbb001f121c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f121c05, DNA
sequence
Length = 812
Score = 519 bits (262), Expect = e-145
Identities = 413/464 (89%), Gaps = 12/464 (2%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 556 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 497
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 496 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 437
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||||||||| |||||||| | |||| | || |||||||||||||||||||||||
Sbjct: 436 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 377
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 376 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 317
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 316 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 257
Query: 483 cttcttg---tcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||| |||||||| || ||||||| |||||| |||| ||||| |||||||||||
Sbjct: 256 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 197
Query: 540 cttgggcttcttccccgccggggc---------cttcgcggcagcgggctcctcctccgc 590
|||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 196 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 137
Query: 591 tggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 136 gggcttcttcgccgccggcttcttctccgccttgggtgccatcg 93
>gb|BE355360.1|BE355360 DG1_114_A03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 519 bits (262), Expect = e-145
Identities = 413/464 (89%), Gaps = 12/464 (2%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 526 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 467
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 466 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 407
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||||||||| |||||||| | |||| | || |||||||||||||||||||||||
Sbjct: 406 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 347
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 346 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 287
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 286 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 227
Query: 483 cttcttg---tcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||| |||||||| || ||||||| |||||| |||| ||||| |||||||||||
Sbjct: 226 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 167
Query: 540 cttgggcttcttccccgccggggc---------cttcgcggcagcgggctcctcctccgc 590
|||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 166 cttgggcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgc 107
Query: 591 tggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 106 gggcttcttcgccgccggcttcttctccgccttgggtgccatcg 63
>gb|BG488416.1|BG488416 RHIZ2_63_D10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 556
Score = 505 bits (255), Expect = e-141
Identities = 407/458 (88%), Gaps = 6/458 (1%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 479
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 478 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 419
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 418 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgat 359
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 358 gaaggagttcatgatggacatggccttggaggagataccgatgtccgggtgcacctgctt 299
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||
Sbjct: 298 cagcaccttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccgacc 239
Query: 483 cttcttgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggcctt 542
| |||| |||||||| || |||| || |||||| |||||||||| |||||||| |||||
Sbjct: 238 cctcttctcgccgccctccttgctggcggacttgcccgccgggagacgcttctccgcctt 179
Query: 543 gggcttcttccccgccggggcctt------cgcggcagcgggctcctcctccgctggctt 596
||||||||||||||| |||||||| || ||| |||| |||||||||| | |||||
Sbjct: 178 gggcttcttccccgcgggggccttctccgccggggccgcggactcctcctccacgggctt 119
Query: 597 cttcgcagccggcttcttctccgccttgggcgccatcg 634
|||||| |||||||||||||||||||||||||||||||
Sbjct: 118 cttcgctgccggcttcttctccgccttgggcgccatcg 81
>gb|BG240440.1|BG240440 OV1_30_A12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 498 bits (251), Expect = e-139
Identities = 406/458 (88%), Gaps = 6/458 (1%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 532 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 473
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 472 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 413
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 412 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgat 353
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 352 gaacgagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 293
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||
Sbjct: 292 cagcaccttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccgacc 233
Query: 483 cttcttgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggcctt 542
| |||| |||||||| || |||| || |||||| |||||||||| |||||||| |||||
Sbjct: 232 cctcttctcgccgccctccttgctggcggacttgcccgccgggagacgcttctccgcctt 173
Query: 543 gggcttcttccccgccggggcctt------cgcggcagcgggctcctcctccgctggctt 596
||||||||||||||| |||| ||| || ||| |||| ||||||||| | |||||
Sbjct: 172 gggcttcttccccgcggggggcttctccgccggggccgcggattcctcctccacgggctt 113
Query: 597 cttcgcagccggcttcttctccgccttgggcgccatcg 634
|||||| |||||||||||||||||||||||||||||||
Sbjct: 112 cttcgctgccggcttcttctccgccttgggcgccatcg 75
>gb|BE599367.1|BE599367 PI1_88_F07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 488 bits (246), Expect = e-136
Identities = 345/378 (91%)
Strand = Plus / Minus
Query: 149 ctaccaacgccacccaatagctactacctcaaatctaagatgatgtgaacttagtgacgg 208
|||||||||||||||| |||||||| || | || ||||||||| |||||||| || ||||
Sbjct: 378 ctaccaacgccacccagtagctactgccaccaacctaagatgaggtgaacttggtaacgg 319
Query: 209 ccttggtgccctcagagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacag 268
||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || |
Sbjct: 318 ccttggtgccctcggagacggcgtgcttggcgagctcgccggggaggacgaggcggacgg 259
Query: 269 aggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcag 328
|||| || ||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 258 aggtctggatctccctggaggtgatggtgggctttttgttgtagcgcgcgagcttggcgg 199
Query: 329 cctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggcct 388
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 198 cttcgccggcgagcttctcgaagatatcgttgatgaaggaattcatgatggacatggcct 139
Query: 389 tggaagagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgt 448
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tggaggagatgccggtgtcggggtggacctgcttcagcaccttgaagatgtagatcttgt 79
Query: 449 aggtctccaccgacttcttcgccttcttcttacccttcttgtcgccgccttctttgccgg 508
||||||||||||||||||| ||||||||||| |||||||||||||| || || |||||||
Sbjct: 78 aggtctccaccgacttcttagccttcttcttgcccttcttgtcgcccccctccttgccgg 19
Query: 509 acgacttggccgccggga 526
||||||| |||||||||
Sbjct: 18 ccgacttgcccgccggga 1
>gb|AW680031.1|AW680031 WS1_34_A02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 558
Score = 480 bits (242), Expect = e-134
Identities = 352/388 (90%), Gaps = 3/388 (0%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 428 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 369
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 368 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 309
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||||||||| |||||||| | |||| | || |||||||||||||||||||||||
Sbjct: 308 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 249
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 248 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 189
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 188 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 129
Query: 483 cttcttg---tcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||| |||||||| || ||||||| |||||| |||| ||||| |||||||||||
Sbjct: 128 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 69
Query: 540 cttgggcttcttccccgccggggccttc 567
||||||||||||||||||||||||||||
Sbjct: 68 cttgggcttcttccccgccggggccttc 41
>gb|AW745446.1|AW745446 WS1_34_A02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 480 bits (242), Expect = e-134
Identities = 378/424 (89%), Gaps = 12/424 (2%)
Strand = Plus / Minus
Query: 223 gagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacagaggtttgaatctcc 282
||||| ||||||||||||||||||||||| ||||| ||||| || ||||| || |||||
Sbjct: 496 gagacggcgtgcttggcgagctcgccggggaggacgaggcgcaccgaggtctggatctcg 437
Query: 283 cgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcagcctcgccggcgagc 342
|| |||||||||||||||||||||||||||||||| |||||||| | |||| | || |||
Sbjct: 436 cgggaggtgatggtgggcttcttgttgtagcgcgccagcttggcggactcggccgcaagc 377
Query: 343 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagagatgccg 402
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 376 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagatgccg 317
Query: 403 atgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctccaccgac 462
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 316 atgtccgggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacggac 257
Query: 463 ttcttcgccttcttcttacccttcttg---tcgccgccttctttgccggacgacttggcc 519
||||||||||||||||| ||||||||| |||||||| || ||||||| |||||| ||
Sbjct: 256 ttcttcgccttcttcttccccttcttgccctcgccgccctccttgccggcggacttgccc 197
Query: 520 gccgggaggcgcttctcggccttgggcttcttccccgccggggc---------cttcgcg 570
|| ||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 196 gcggggagccgcttctcggccttgggcttcttccccgccggggccttctccgccttctcg 137
Query: 571 gcagcgggctcctcctccgctggcttcttcgcagccggcttcttctccgccttgggcgcc 630
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 136 gtcgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggtgcc 77
Query: 631 atcg 634
||||
Sbjct: 76 atcg 73
>gb|BE355526.1|BE355526 DG1_114_A03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 480 bits (242), Expect = e-134
Identities = 352/388 (90%), Gaps = 3/388 (0%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 422 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 363
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 362 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 303
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||||||||| |||||||| | |||| | || |||||||||||||||||||||||
Sbjct: 302 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 243
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 242 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 183
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 182 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 123
Query: 483 cttcttg---tcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||| |||||||| || ||||||| |||||| |||| ||||| |||||||||||
Sbjct: 122 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 63
Query: 540 cttgggcttcttccccgccggggccttc 567
||||||||||||||||||||||||||||
Sbjct: 62 cttgggcttcttccccgccggggccttc 35
>gb|BG410872.1|BG410872 EM1_27_A01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 537
Score = 480 bits (242), Expect = e-134
Identities = 352/388 (90%), Gaps = 3/388 (0%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 394 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 335
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 334 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 275
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||||||||| |||||||| | |||| | || |||||||||||||||||||||||
Sbjct: 274 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 215
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 214 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 155
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 154 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 95
Query: 483 cttcttg---tcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggc 539
||||||| |||||||| || ||||||| |||||| |||| ||||| |||||||||||
Sbjct: 94 cttcttgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggc 35
Query: 540 cttgggcttcttccccgccggggccttc 567
||||||||||||||||||||||||||||
Sbjct: 34 cttgggcttcttccccgccggggccttc 7
>gb|BG411209.1|BG411209 EM1_27_A01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 480 bits (242), Expect = e-134
Identities = 378/424 (89%), Gaps = 12/424 (2%)
Strand = Plus / Minus
Query: 223 gagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacagaggtttgaatctcc 282
||||| ||||||||||||||||||||||| ||||| ||||| || ||||| || |||||
Sbjct: 494 gagacggcgtgcttggcgagctcgccggggaggacgaggcgcaccgaggtctggatctcg 435
Query: 283 cgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcagcctcgccggcgagc 342
|| |||||||||||||||||||||||||||||||| |||||||| | |||| | || |||
Sbjct: 434 cgggaggtgatggtgggcttcttgttgtagcgcgccagcttggcggactcggccgcaagc 375
Query: 343 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagagatgccg 402
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 374 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagatgccg 315
Query: 403 atgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctccaccgac 462
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 314 atgtccgggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacggac 255
Query: 463 ttcttcgccttcttcttacccttcttg---tcgccgccttctttgccggacgacttggcc 519
||||||||||||||||| ||||||||| |||||||| || ||||||| |||||| ||
Sbjct: 254 ttcttcgccttcttcttccccttcttgccctcgccgccctccttgccggcggacttgccc 195
Query: 520 gccgggaggcgcttctcggccttgggcttcttccccgccggggc---------cttcgcg 570
|| ||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 194 gcggggagccgcttctcggccttgggcttcttccccgccggggccttctccgccttctcg 135
Query: 571 gcagcgggctcctcctccgctggcttcttcgcagccggcttcttctccgccttgggcgcc 630
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 134 gtcgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggtgcc 75
Query: 631 atcg 634
||||
Sbjct: 74 atcg 71
>gb|BE917707.1|BE917707 OV1_6_B04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 554
Score = 476 bits (240), Expect = e-132
Identities = 409/466 (87%), Gaps = 12/466 (2%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 549 ctaagacgaggtgaacttggtgacggccttggtgccctcggagacggcgtgcttggcgag 490
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| ||||| ||||| ||||| || || || || ||||| || || ||||||||||||||
Sbjct: 489 ctccccggggaggacgaggcggacggaagtctggatctctcgggacgtgatggtgggctt 430
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 429 cttgttgtagcgggcgagcttggcggactcggcggcgagcttctcgaagatgtcgttgat 370
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 369 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 310
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct: 309 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggccttcttcttgcc 250
Query: 483 cttcttgtcgccgccttctttgccgg---acgacttggccgccgggaggcgcttctcggc 539
||||||| | |||| || ||||||| |||||| |||| |||||||||||||| ||
Sbjct: 249 cttcttgccctcgccgtccttgccggcgctggacttgcccgcggggaggcgcttctccgc 190
Query: 540 cttgggcttcttccccgccggg---------gccttcgcggcagcgggctcctcctccgc 590
||| |||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct: 189 cttcggcttcttccccgccggggtcttctccgccttctcggccgcgggctcctcctccgc 130
Query: 591 tggcttcttcgcagccggcttcttctccgccttgggcgccatcgat 636
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 129 gggcttcttcgccgccggcttcttctccgccttgggcgccatcgat 84
>gb|BF704683.1|BF704683 FM1_50_B08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 563
Score = 474 bits (239), Expect = e-132
Identities = 341/375 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 518 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 459
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 458 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 399
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 339
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 338 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 279
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 278 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 219
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttcttc 552
||||| || |||||||| ||||||| || || |||||||||||||||||||||||||||
Sbjct: 218 ccgccctccttgccggaggacttggaggcgggcaggcgcttctcggccttgggcttcttc 159
Query: 553 cccgccggggccttc 567
|| || || ||||||
Sbjct: 158 cctgcgggcgccttc 144
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 122 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 80
>gb|BG048803.1|BG048803 OV1_23_C04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 363
Score = 472 bits (238), Expect = e-131
Identities = 286/302 (94%)
Strand = Plus / Minus
Query: 337 gcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagag 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 363 gcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaggag 304
Query: 397 atgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctcc 456
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 303 atgccgatgtcggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctcc 244
Query: 457 accgacttcttcgccttcttcttacccttcttgtcgccgccttctttgccggacgacttg 516
||||||||||| ||||||||||| ||||||||||||||||| || ||||||| ||||||
Sbjct: 243 accgacttcttggccttcttcttgcccttcttgtcgccgccctccttgccggcagacttg 184
Query: 517 gccgccgggaggcgcttctcggccttgggcttcttccccgccggggccttcgcggcagcg 576
|||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 183 cccgcggggaggcgcttctccgccttgggcttcttccccgccggggccttctcggccgcg 124
Query: 577 ggctcctcctccgctggcttcttcgcagccggcttcttctccgccttgggcgccatcgat 636
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 123 ggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggcgccatcgat 64
Query: 637 gc 638
||
Sbjct: 63 gc 62
>gb|BE592516.1|BE592516 WS1_94_A05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 364
Score = 464 bits (234), Expect = e-129
Identities = 294/314 (93%)
Strand = Plus / Minus
Query: 287 aggtgatggtgggcttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttct 346
||||||||||||||| |||||||||||| || |||||| | |||||||||||||||||||
Sbjct: 321 aggtgatggtgggctccttgttgtagcgggcgagcttgccggcctcgccggcgagcttct 262
Query: 347 cgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagagatgccgatgt 406
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 cgaagatgtcgttgatgaaggagttcatgatggacatggccttggaggagatgccgatgt 202
Query: 407 cggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctccaccgacttct 466
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccaccgacttct 142
Query: 467 tcgccttcttcttacccttcttgtcgccgccttctttgccggacgacttggccgccggga 526
| ||||||||||| ||||||||||||||||| || ||||||| |||||| |||| ||||
Sbjct: 141 tggccttcttcttgcccttcttgtcgccgccctccttgccggcagacttgcccgcgggga 82
Query: 527 ggcgcttctcggccttgggcttcttccccgccggggccttcgcggcagcgggctcctcct 586
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 81 ggcgcttctccgccttgggcttcttccccgccggggccttctcggccgcgggctcctcct 22
Query: 587 ccgctggcttcttc 600
|||| |||||||||
Sbjct: 21 ccgcgggcttcttc 8
>gb|CW128767.1|CW128767 104_510_11114194_148_34755_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114194, DNA
sequence
Length = 652
Score = 458 bits (231), Expect = e-127
Identities = 402/458 (87%), Gaps = 7/458 (1%)
Strand = Plus / Plus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 192 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 251
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 252 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 311
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgat 371
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 372 gaacgagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 431
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||
Sbjct: 432 cagcaccttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccgacc 491
Query: 483 cttcttgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggcctt 542
| |||| |||||||| || |||| || |||||| |||||||||| |||||||| |||||
Sbjct: 492 cctcttctcgccgccctccttgctggcggacttgcccgccgggagacgcttctccgcctt 551
Query: 543 gggcttcttccccgccggggcctt------cgcggcagcgggctcctcctccgctggctt 596
||||||||||||||| |||| ||| || ||| |||| ||||||| | | |||||
Sbjct: 552 gggcttcttccccgcggggggcttctccgccggggccgcggattcctcct-cacgggctt 610
Query: 597 cttcgcagccggcttcttctccgccttgggcgccatcg 634
|||||| ||| | ||||||||||||||||||||||||
Sbjct: 611 cttcgctgcccggctcttctccgccttgggcgccatcg 648
>gb|BG488106.1|BG488106 RHIZ2_63_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 514
Score = 454 bits (229), Expect = e-126
Identities = 346/385 (89%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 410 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 351
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 350 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 291
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 290 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgat 231
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 230 gaaggagttcatgatggacatggccttggaggagataccgatgtccgggtgcacctgctt 171
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||
Sbjct: 170 cagcaccttgaagatgtagatcttgtacgtctccacgctcttcttgcccttcttccgacc 111
Query: 483 cttcttgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggcctt 542
| |||| |||||||| || |||| || |||||| |||||||||| |||||||| |||||
Sbjct: 110 cctcttctcgccgccctccttgctggcggacttgcccgccgggagacgcttctccgcctt 51
Query: 543 gggcttcttccccgccggggccttc 567
||||||||||||||| |||||||||
Sbjct: 50 gggcttcttccccgcgggggccttc 26
>gb|BE917630.1|BE917630 OV1_6_B04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 493
Score = 452 bits (228), Expect = e-125
Identities = 411/470 (87%), Gaps = 14/470 (2%)
Strand = Plus / Minus
Query: 181 atctaagatgatgtgaacttagtgacggccttggt-gccctca-gagacagcgtgcttgg 238
|||||||| || |||||||| |||||||||||||| |||||| ||||| ||||||||||
Sbjct: 477 atctaagacgaggtgaacttggtgacggccttggttgccctcgtgagacggcgtgcttgg 418
Query: 239 cgagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgg 298
||||||| ||||| ||||| ||||| || || || || ||||| || || ||||||||||
Sbjct: 417 cgagctccccggggaggacgaggcggacggaagtctggatctctcgggacgtgatggtgg 358
Query: 299 gcttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgt 358
|||||||||||||||| || |||||||| | |||| ||||||||||||||||||||||||
Sbjct: 357 gcttcttgttgtagcgggcgagcttggcggactcggcggcgagcttctcgaagatgtcgt 298
Query: 359 tgatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacct 418
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 297 tgatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacct 238
Query: 419 gcttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttct 478
|||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 237 gcttgagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggccttcttct 178
Query: 479 tacccttcttgtcgccgccttctttgccgg---acgacttggccgccgggaggcgcttct 535
| ||||||||| | |||| || ||||||| |||||| |||| |||||||||||||
Sbjct: 177 tgcccttcttgccctcgccgtccttgccggcgctggacttgcccgcggggaggcgcttct 118
Query: 536 cggccttgggcttcttccccgccggg---------gccttcgcggcagcgggctcctcct 586
| ||||| |||||||||||||||||| |||||| |||| |||||||||||||
Sbjct: 117 ccgccttcggcttcttccccgccggggtcttctccgccttctcggccgcgggctcctcct 58
Query: 587 ccgctggcttcttcgcagccggcttcttctccgccttgggcgccatcgat 636
|||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 57 ccgcgggcttcttcgccgccggcttcttctccgccttgggcgccatcgat 8
>gb|AW564395.1|AW564395 LG1_292_F12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 568
Score = 450 bits (227), Expect = e-125
Identities = 326/359 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 513 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 454
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 453 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 394
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 393 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 334
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 333 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 274
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 273 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 214
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttctt 551
||||| || || ||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct: 213 ccgccctccttaccggaggacttggaggcgggcaggcgcttctcggccttgggcttctt 155
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 117 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 75
>gb|BE593143.1|BE593143 WS1_98_A10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 596
Score = 450 bits (227), Expect = e-125
Identities = 326/359 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 459 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 400
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 399 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 340
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 339 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 280
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 220
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 219 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 160
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttctt 551
||||| || || ||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct: 159 ccgccctccttaccggaggacttggaggcgggcaggcgcttctcggccttgggcttctt 101
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 63 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 21
>gb|CD431873.1|CD431873 ETH1_11_A02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_11_A02_A002 5', mRNA sequence
Length = 667
Score = 450 bits (227), Expect = e-125
Identities = 326/359 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 537 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 478
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 477 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 418
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 417 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 358
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 357 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 298
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 297 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 238
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttctt 551
||||| || || ||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct: 237 ccgccctccttaccggaggacttggaggcgggcaggcgcttctcggccttgggcttctt 179
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 141 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 99
>gb|CN150853.1|CN150853 WOUND1_71_G11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_71_G11_A002 5', mRNA sequence
Length = 765
Score = 450 bits (227), Expect = e-125
Identities = 326/359 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 519 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 460
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 459 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 400
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 399 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 340
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 339 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 280
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 279 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 220
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttctt 551
||||| || || ||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct: 219 ccgccctccttaccggaggacttggaggcgggcaggcgcttctcggccttgggcttctt 161
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 123 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 81
>gb|CN126047.1|CN126047 RHOH1_14_H01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_H01_A002 5', mRNA sequence
Length = 770
Score = 442 bits (223), Expect = e-122
Identities = 325/359 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 519 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 460
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 459 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 400
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 399 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgccattgatgaaggagttc 340
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 339 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 280
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 279 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 220
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttctt 551
||||| || || ||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct: 219 ccgccctccttaccggaggacttggaggcgggcaggcgcttctcggccttgggcttctt 161
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 123 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 81
>gb|CX608442.1|CX608442 ANR1_38_D08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_D08_A002 5', mRNA sequence
Length = 635
Score = 442 bits (223), Expect = e-122
Identities = 325/359 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 511 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 452
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 451 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 392
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 391 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagtcc 332
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 331 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 272
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 271 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 212
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttctt 551
||||| || || ||||| ||||||| || || ||||||||||||||||||||||||||
Sbjct: 211 ccgccctccttaccggaggacttggaggcgggcaggcgcttctcggccttgggcttctt 153
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 115 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 73
>gb|CW112587.1|CW112587 104_486_11104970_116_34548_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104970, DNA
sequence
Length = 602
Score = 440 bits (222), Expect = e-122
Identities = 309/338 (91%)
Strand = Plus / Plus
Query: 149 ctaccaacgccacccaatagctactacctcaaatctaagatgatgtgaacttagtgacgg 208
|||||||||||||||| |||||||| || | || ||||||||| |||||||| || ||||
Sbjct: 265 ctaccaacgccacccagtagctactgccaccaacctaagatgaggtgaacttggtaacgg 324
Query: 209 ccttggtgccctcagagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacag 268
||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || |
Sbjct: 325 ccttggtgccctcggagacggcgtgcttggcgagctcgccggggaggacgaggcggacgg 384
Query: 269 aggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcag 328
|||| || ||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 385 aggtctggatctccctggaggtgatggtgggctttttgttgtagcgcgcgagcttggcgg 444
Query: 329 cctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggcct 388
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 445 cttcgccggcgagcttctcgaagatatcgttgatgaaggaattcatgatggacatggcct 504
Query: 389 tggaagagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgt 448
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 tggaggagatgccggtgtcggggtggacctgcttcagcaccttgaacatgtagatcttgt 564
Query: 449 aggtctccaccgacttcttcgccttcttcttacccttc 486
||||||||||||||||||| ||||||||||| ||||||
Sbjct: 565 aggtctccaccgacttcttagccttcttcttgcccttc 602
>gb|BE592378.1|BE592378 WS1_94_A05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 464
Score = 436 bits (220), Expect = e-120
Identities = 292/316 (92%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
|||||||||||| |||||||| || ||||||||||||||||| || || |||||||||||
Sbjct: 316 aatctaagatgaggtgaacttggtaacggccttggtgccctcggacacggcgtgcttggc 257
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
||||||||| || ||||| ||||| || || || || ||||||| ||||||||||||||
Sbjct: 256 gagctcgcctgggaggacgaggcgcaccgacgtctggatctccctggaggtgatggtggg 197
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 196 cttcttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcgtt 137
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 136 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtgcacctg 77
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 76 cttgagcaccttgaagatgtagatcttgtaggtctccaccgacttcttggccttcttctt 17
Query: 480 acccttcttgtcgccg 495
|||||||||||||||
Sbjct: 16 gcccttcttgtcgccg 1
>gb|BE355445.1|BE355445 DG1_114_A03.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 432 bits (218), Expect = e-119
Identities = 345/388 (88%), Gaps = 12/388 (3%)
Strand = Plus / Minus
Query: 259 aggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgca 318
||||| || ||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 450 aggcgcaccgaggtctggatctcgcgggaggtgatggtgggcttcttgttgtagcgcgcc 391
Query: 319 agcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatg 378
|||||||| | |||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agcttggcggactcggccgcaagcttctcgaagatgtcgttgatgaaggagttcatgatg 331
Query: 379 gacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttgaagatg 438
|||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 330 gacatggccttggacgagatgccgatgtccgggtgcacctgcttgagcaccttgaagatg 271
Query: 439 tagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttg---tcgccg 495
|||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct: 270 tagatcttgtaggtctccacggacttcttcgccttcttcttccccttcttgccctcgccg 211
Query: 496 ccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggcttcttcccc 555
|| || ||||||| |||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct: 210 ccctccttgccggcggacttgcccgcggggagccgcttctcggccttgggcttcttcccc 151
Query: 556 gccggggc---------cttcgcggcagcgggctcctcctccgctggcttcttcgcagcc 606
|||||||| |||| ||| ||||||||||||||||| ||||||||||| |||
Sbjct: 150 gccggggccttctccgccttctcggtcgcgggctcctcctccgcgggcttcttcgccgcc 91
Query: 607 ggcttcttctccgccttgggcgccatcg 634
|||||||||||||||||||| |||||||
Sbjct: 90 ggcttcttctccgccttgggtgccatcg 63
>gb|CW129063.1|CW129063 104_511_11114353_148_34760_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114353, DNA
sequence
Length = 698
Score = 422 bits (213), Expect = e-116
Identities = 347/391 (88%), Gaps = 3/391 (0%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
||||||||| || |||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 643 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 584
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
|||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| ||||||||
Sbjct: 583 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 524
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
||||||||||||||| || |||||||| | ||| |||| ||||||||||||||||||||
Sbjct: 523 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 464
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 463 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 404
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct: 403 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttgcccttcttcct 344
Query: 480 acccttcttgtcgccgccttctttgc---cggacgacttggccgccgggaggcgcttctc 536
|||||||| |||||||| || |||| ||||||||||| |||||||||| ||||||||
Sbjct: 343 ccccttcttctcgccgccctccttgccggcggacgacttgcccgccgggagccgcttctc 284
Query: 537 ggccttgggcttcttccccgccggggccttc 567
|||||||||||||||||||| |||||||||
Sbjct: 283 cgccttgggcttcttccccgcgggggccttc 253
Score = 93.7 bits (47), Expect = 2e-017
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 576 gggctcctcctccgctggcttcttcgcagccggcttcttctccgccttgggcgccatcga 635
||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 229 gggctcctcctccgcgggcttcttcgacgccggcttcttctctgccttgggcgccatcga 170
Query: 636 tgc 638
|||
Sbjct: 169 tgc 167
>gb|CF071274.1|CF071274 FE1_16_D02.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_D02_A002 5', mRNA sequence
Length = 551
Score = 420 bits (212), Expect = e-116
Identities = 311/344 (90%)
Strand = Plus / Plus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 208 gtgaacttggtgacggccttggtgccctcggagacggcgtgcttggcgagctcaccgggg 267
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 268 aggacgaggcggacggaggtctggatctcccgggacgtgatggtgggcttcttgttgtac 327
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 328 cgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttc 387
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 388 atgatggacatggccttggacgagatgccgatgtccgggtgcacctgcttcggcaccttg 447
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 448 aagatgtagatcttgtacgtctccaccgacttcttcgccttcttctttcccttcttctcg 507
Query: 493 ccgccttctttgccggacgacttggccgccgggaggcgcttctc 536
|||||||| ||||| | |||||| ||| |||||| ||||||||
Sbjct: 508 ccgccttccttgcccgcggacttgcccgacgggagccgcttctc 551
>gb|BE593453.1|BE593453 WS1_98_A10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 487
Score = 414 bits (209), Expect = e-114
Identities = 299/329 (90%)
Strand = Plus / Minus
Query: 223 gagacagcgtgcttggcgagctcgccgggaaggacaaggcgaacagaggtttgaatctcc 282
||||| ||||||||||||||||| ||||| ||||| ||||| || |||||||| |||||
Sbjct: 483 gagacggcgtgcttggcgagctctccggggaggacgaggcgcacggaggtttggatctcg 424
Query: 283 cgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggcagcctcgccggcgagc 342
|| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 423 cgggaggtgatggtgggcttcttgttgtaccgcgcgagcttggcggcctcgccggcgagc 364
Query: 343 ttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagagatgccg 402
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 363 ttctcgaagatgtcattgatgaaggagttcatgatggacatggccttggaggagatgccg 304
Query: 403 atgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggtctccaccgac 462
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 303 atgtcggggtgcacctgcttcagcaccttgaagatgtagattttgtaggtctccacgctc 244
Query: 463 ttcttcgccttcttcttacccttcttgtcgccgccttctttgccggacgacttggccgcc 522
||||| ||||||||||| |||||||| |||||||| || || ||||| ||||||| ||
Sbjct: 243 ttcttggccttcttcttccccttcttctcgccgccctccttaccggaggacttggaggcg 184
Query: 523 gggaggcgcttctcggccttgggcttctt 551
|| ||||||||||||||||||||||||||
Sbjct: 183 ggcaggcgcttctcggccttgggcttctt 155
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 117 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 75
>gb|BF481909.1|BF481909 FM1_22_H04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 506
Score = 414 bits (209), Expect = e-114
Identities = 281/305 (92%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 306 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 247
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 246 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 187
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 127
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 126 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 67
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 66 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 7
Query: 493 ccgcc 497
|||||
Sbjct: 6 ccgcc 2
>gb|BG102543.1|BG102543 RHIZ2_34_D04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 495
Score = 414 bits (209), Expect = e-114
Identities = 337/379 (88%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
||||||||| || |||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 379 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 320
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
|||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| ||||||||
Sbjct: 319 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 260
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
||||||||||||||| || |||||||| | ||| |||| ||||||||||||||||||||
Sbjct: 259 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 200
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 199 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 140
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
|||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct: 139 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttccccttcttcct 80
Query: 480 acccttcttgtcgccgccttctttgc---cggacgacttggccgccgggaggcgcttctc 536
|||||||| |||||||| || |||| ||||||||||| |||||||||| ||||||||
Sbjct: 79 ccccttcttctcgccgccctccttgccgacggacgacttgcccgccgggagccgcttctc 20
Query: 537 ggccttgggcttcttcccc 555
||||||||||||||||||
Sbjct: 19 cgccttgggcttcttcccc 1
>gb|BF656458.1|BF656458 FM1_50_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 556
Score = 410 bits (207), Expect = e-113
Identities = 279/303 (92%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 303 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 244
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 243 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 184
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 124
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 123 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 64
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 63 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 4
Query: 493 ccg 495
|||
Sbjct: 3 ccg 1
>gb|CN125957.1|CN125957 RHOH1_14_H01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_H01_A002 3', mRNA sequence
Length = 781
Score = 406 bits (205), Expect = e-111
Identities = 295/325 (90%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 331 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 272
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 271 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 212
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 211 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgccattgatgaaggagttc 152
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 151 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 92
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||| |||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct: 91 aagatgtagattttgtaggtctccacgctcttcttggccttcttcttccccttcttctcg 32
Query: 493 ccgccttctttgccggacgacttgg 517
||||| || || ||||| |||||||
Sbjct: 31 ccgccctccttaccggaggacttgg 7
>gb|CW463246.1|CW463246 fsbb001f211m02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211m02, DNA
sequence
Length = 667
Score = 404 bits (204), Expect = e-111
Identities = 291/320 (90%)
Strand = Plus / Minus
Query: 248 cgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgt 307
|||| ||||| ||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 667 cggggaggacgaggcggacggaggtctggatctcccgggacgtgatggtgggcttcttgt 608
Query: 308 tgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaagg 367
|||| ||||| |||||||| ||||| | || ||||||||||||||||||||||||||||
Sbjct: 607 tgtaccgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaagg 548
Query: 368 agttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagca 427
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 547 agttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgcttcagca 488
Query: 428 ccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttct 487
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 487 ccttgaagatgtagatcttgtacgtctccaccgacttcttcgccttcttctttcccttct 428
Query: 488 tgtcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgggct 547
| ||||||||||| ||||| | |||||| ||| |||||| |||||||||||||| ||||
Sbjct: 427 tctcgccgccttccttgcccgcggacttgcccgacgggagccgcttctcggccttcggct 368
Query: 548 tcttccccgccggggccttc 567
||||||||||||||||||||
Sbjct: 367 tcttccccgccggggccttc 348
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 577 ggctcctcctccgctggcttcttcgcagccggcttcttctccgccttgggcgccat 632
|||||||||||||| |||||||| || || ||||||||||| ||||||||||||||
Sbjct: 329 ggctcctcctccgccggcttcttggccgcgggcttcttctcggccttgggcgccat 274
>gb|CF071535.1|CF071535 FE1_17_C03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_17_C03_A002 3', mRNA sequence
Length = 466
Score = 402 bits (203), Expect = e-110
Identities = 281/307 (91%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 340 ctaagaagaggtgaacttggtgacagccttggtgccctcggagacggcgtgcttggcgag 281
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 280 ctcgccggggaggacgaggcgcaccgaggtctggatctcgcgggaggtgatggtgggctt 221
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||||||||| |||||||| | |||| | || |||||||||||||||||||||||
Sbjct: 220 cttgttgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgat 161
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 160 gaaggagttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgctt 101
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 100 gagcaccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccc 41
Query: 483 cttcttg 489
|||||||
Sbjct: 40 cttcttg 34
>gb|CF072752.1|CF072752 FE1_25_E07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_E07_A002 5', mRNA sequence
Length = 590
Score = 400 bits (202), Expect = e-110
Identities = 286/314 (91%)
Strand = Plus / Plus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 263 gtgaacttggtgacggccttggtgccctcggagacggcgtgcttggcgagctcaccgggg 322
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 323 aggacgaggcggacggaggtctggatctcccgggacgtgatggtgggcttcttgttgtac 382
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||| | || ||||||||||| |||||||||||||||||||||
Sbjct: 383 cgcgccagcttggccgcctccgccgccagcttctcgaaaatgtcgttgatgaaggagttc 442
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 443 atgatggacatggccttggacgagatgccgatgtccgggtgcacctgcttcagcaccttg 502
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttcttgtcg 492
||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 503 aagatgtagatctcgtacgtctccaccgacttcttcgccttcttctttcccttcttctcg 562
Query: 493 ccgccttctttgcc 506
|||||||| |||||
Sbjct: 563 ccgccttccttgcc 576
>gb|BF482021.1|BF482021 FM1_22_H04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 455
Score = 396 bits (200), Expect = e-108
Identities = 275/300 (91%)
Strand = Plus / Minus
Query: 268 gaggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggca 327
|||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 447 gaggtttggatctcgcgggaggtgatggtgggcttcttgttgtaccgcgcgagcttggcg 388
Query: 328 gcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggcc 328
Query: 388 ttggaagagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttg 447
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 327 ttggaggagatgccgatgtcggggtgcacctgcttcagcaccttgaagatgtagattttg 268
Query: 448 taggtctccaccgacttcttcgccttcttcttacccttcttgtcgccgccttctttgccg 507
||||||||||| |||||| ||||||||||| |||||||| |||||||| || ||||||
Sbjct: 267 taggtctccacgctcttcttggccttcttcttccccttcttctcgccgccctccttgccg 208
Query: 508 gacgacttggccgccgggaggcgcttctcggccttgggcttcttccccgccggggccttc 567
|| ||||||| || || ||||||||||||||||||||||||||||| || || ||||||
Sbjct: 207 gaggacttggaggcgggcaggcgcttctcggccttgggcttcttccctgcgggcgccttc 148
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 592 ggcttcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||||| | || ||||||||||| ||||||||||||||||
Sbjct: 126 ggcttcttctccgctggcttcttctcggccttgggcgccatcg 84
>gb|CW297850.1|CW297850 104_780_11462260_116_35647_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462260, DNA
sequence
Length = 662
Score = 389 bits (196), Expect = e-106
Identities = 327/370 (88%), Gaps = 3/370 (0%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
||||||||| || |||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 370 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 311
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
|||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| ||||||||
Sbjct: 310 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 251
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
||||||||||||||| || |||||||| | ||| |||| ||||||||||||||||||||
Sbjct: 250 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 191
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 190 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 131
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct: 130 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttgcccttcttcct 71
Query: 480 acccttcttgtcgccgccttctttgc---cggacgacttggccgccgggaggcgcttctc 536
|||||||| |||||||| || |||| ||||||||||| |||||||||| ||||||||
Sbjct: 70 ccccttcttctcgccgccctccttgccggcggacgacttgcccgccgggagccgcttctc 11
Query: 537 ggccttgggc 546
|||||||||
Sbjct: 10 cgccttgggc 1
>gb|CW361905.1|CW361905 fsbb001f030l13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030l13, DNA
sequence
Length = 669
Score = 387 bits (195), Expect = e-105
Identities = 264/287 (91%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 291 gtgaacttggtgacggccttggtgccctcggagacggcgtgcttggcgagctcaccgggg 232
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 231 aggacgaggcggacggaggtctggatctcccgggacgtgatggtgggcttcttgttgtac 172
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 171 cgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttc 112
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 111 atgatggacatggccttggacgagatgccgatgtccgggtgcacctgcttcagcaccttg 52
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 51 aagatgtagatcttgtacgtctccaccgacttcttcgccttcttctt 5
>gb|CW182557.1|CW182557 104_598_11164141_116_36663_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164141, DNA
sequence
Length = 658
Score = 385 bits (194), Expect = e-105
Identities = 263/286 (91%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 286 gtgaacttggtgacggccttggttccctcggagacggcgtgcttggcgagctctccgggg 227
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 226 aggacgaggcgcacggaggtttggatctcgcgggaggtgatggtgggcttcttgttgtac 167
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 166 cgcgcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgatgaaggagttc 107
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 106 atgatggacatggccttggaggagatgccgatgtcggggtgcacctgcttcagcaccttg 47
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttcttct 478
||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct: 46 aagatgtagattttgtaggtctccacgctcttcttggccttcttct 1
>gb|BG052252.1|BG052252 RHIZ2_12_B05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 464
Score = 385 bits (194), Expect = e-105
Identities = 319/360 (88%), Gaps = 3/360 (0%)
Strand = Plus / Minus
Query: 180 aatctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggc 239
||||||||| || |||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 363 aatctaagaggaggtgaacttggtgacggccttggtaccctcggagacggcgtgcttggc 304
Query: 240 gagctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtggg 299
|||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| ||||||||
Sbjct: 303 gagctccccggggaggacgaggcggacggaggtctggatctcgcgggaggtaatggtggg 244
Query: 300 cttcttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgtt 359
||||||||||||||| || |||||||| | ||| |||| ||||||||||||||||||||
Sbjct: 243 cttcttgttgtagcgggcgagcttggcggactccgcggccagcttctcgaagatgtcgtt 184
Query: 360 gatgaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctg 419
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 183 gatgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctg 124
Query: 420 cttcagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
|||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct: 123 cttcaggaccttgaagatgtagatcttgtaggtctccacgctcttcttccccttcttcct 64
Query: 480 acccttcttgtcgccgccttctttgc---cggacgacttggccgccgggaggcgcttctc 536
|||||||| |||||||| || |||| ||||||||||| |||||||||| ||||||||
Sbjct: 63 ccccttcttctcgccgccctccttgccgacggacgacttgcccgccgggagccgcttctc 4
>gb|CW156116.1|CW156116 104_558_11146509_148_36368_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146509, DNA
sequence
Length = 670
Score = 383 bits (193), Expect = e-104
Identities = 302/339 (89%), Gaps = 12/339 (3%)
Strand = Plus / Plus
Query: 308 tgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaagg 367
|||||||||| |||||||| | |||| | || ||||||||||||||||||||||||||||
Sbjct: 1 tgtagcgcgccagcttggcggactcggccgcaagcttctcgaagatgtcgttgatgaagg 60
Query: 368 agttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagca 427
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||
Sbjct: 61 agttcatgatggacatggccttggacgagatgccgatgtccgggtgcacctgcttgagca 120
Query: 428 ccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacccttct 487
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 121 ccttgaagatgtagatcttgtaggtctccacggacttcttcgccttcttcttccccttct 180
Query: 488 tg---tcgccgccttctttgccggacgacttggccgccgggaggcgcttctcggccttgg 544
|| |||||||| || ||||||| |||||| |||| ||||| ||||||||||||||||
Sbjct: 181 tgccctcgccgccctccttgccggcggacttgcccgcggggagccgcttctcggccttgg 240
Query: 545 gcttcttccccgccggggc---------cttcgcggcagcgggctcctcctccgctggct 595
||||||||||||||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 241 gcttcttccccgccggggccttctccgccttctcggtcgcgggctcctcctccgcgggct 300
Query: 596 tcttcgcagccggcttcttctccgccttgggcgccatcg 634
||||||| ||||||||||||||||||||||| |||||||
Sbjct: 301 tcttcgccgccggcttcttctccgccttgggtgccatcg 339
>gb|AI723845.1|AI723845 RHIZ1_28_B06.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 557
Score = 381 bits (192), Expect = e-104
Identities = 255/276 (92%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 282 ctaagacgaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 223
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 222 ctccccggggaggacgaggcggacggaggtctggatctcccgagaagtgatggtgggctt 163
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 162 cttgttgtagcgggcgagcttggcggcctcgccggcgagcttctcgaagatgtcattgat 103
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 102 gaaggagttcatgatggacatggccttggaggagataccgatgtccgggtgcacctgctt 43
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccac 458
||||||||||||||||||||||||||| ||||||||
Sbjct: 42 cagcaccttgaagatgtagatcttgtacgtctccac 7
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,958
Number of Sequences: 832831
Number of extensions: 231958
Number of successful extensions: 68048
Number of sequences better than 0.5: 135
Number of HSP's better than 0.5 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67591
Number of HSP's gapped (non-prelim): 407
length of query: 694
length of database: 491,359,669
effective HSP length: 20
effective length of query: 674
effective length of database: 474,703,049
effective search space: 319949855026
effective search space used: 319949855026
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)