BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI076241.1|BI076241 IP1_27_F09.b1_A002 Immature pannicle... 418 e-115
gb|BG947964.1|BG947964 IP1_7_F09.b1_A002 Immature pannicle ... 392 e-107
gb|CL155712.1|CL155712 104_342_10782352_116_31474_064 Sorgh... 361 5e-098
gb|CW138948.1|CW138948 104_528_11134971_116_34890_002 Sorgh... 361 5e-098
gb|CW138949.1|CW138949 104_528_11134971_148_34894_002 Sorgh... 258 5e-067
gb|CW073953.1|CW073953 104_342_10782352_114_31473_064 Sorgh... 204 7e-051
gb|BG462949.1|BG462949 EM1_46_F07.b1_A002 Embryo 1 (EM1) So... 202 3e-050
gb|BG557835.1|BG557835 EM1_55_A02.b1_A002 Embryo 1 (EM1) So... 202 3e-050
gb|CW270701.1|CW270701 104_742_11402580_116_35333_040 Sorgh... 196 2e-048
gb|BE125108.1|BE125108 DG1_16_F11.b1_A002 Dark Grown 1 (DG1... 96 4e-018
gb|BZ625803.1|BZ625803 ih40h10.g1 WGS-SbicolorF (DH5a methy... 64 2e-008
gb|CW249019.1|CW249019 104_710_11222618_148_35036_005 Sorgh... 64 2e-008
gb|BG050225.1|BG050225 FM1_68_B12.b1_A003 Floral-Induced Me... 62 6e-008
gb|CW156783.1|CW156783 104_559_11146874_116_36378_001 Sorgh... 58 1e-006
gb|CW424123.1|CW424123 fsbb001f134e21f0 Sorghum methylation... 58 1e-006
gb|BF421002.1|BF421002 FM1_5_A09.b1_A003 Floral-Induced Mer... 54 1e-005
gb|BF421012.1|BF421012 FM1_5_B09.b1_A003 Floral-Induced Mer... 54 1e-005
gb|BG241764.1|BG241764 RHIZ2_50_H08.b1_A003 Rhizome2 (RHIZ2... 54 1e-005
gb|BG465638.1|BG465638 RHIZ2_46_H10.b1_A003 Rhizome2 (RHIZ2... 54 1e-005
gb|BI211411.1|BI211411 IP1_60_D09.b1_A002 Immature pannicle... 54 1e-005
gb|CD228647.1|CD228647 CCC1_8_F12.g1_A007 Callus culture/ce... 54 1e-005
gb|BZ343113.1|BZ343113 ho34h02.b1 WGS-SbicolorF (JM107 adap... 38 0.88
gb|BZ343120.1|BZ343120 ho35a01.b2 WGS-SbicolorF (JM107 adap... 38 0.88
gb|CW318712.1|CW318712 104_811_11474096_148_35885_032 Sorgh... 38 0.88
gb|CW472526.1|CW472526 fsbb001f227i02k0 Sorghum methylation... 38 0.88
gb|BZ337552.1|BZ337552 ia89a09.g1 WGS-SbicolorF (JM107 adap... 36 3.5
gb|CW175753.1|CW175753 104_588_11158117_148_36579_057 Sorgh... 36 3.5
gb|CW264823.1|CW264823 104_733_11231517_116_35255_083 Sorgh... 36 3.5
gb|CW412531.1|CW412531 fsbb001f108d07k0 Sorghum methylation... 36 3.5
gb|CW484981.1|CW484981 fsbb001f247h11k0 Sorghum methylation... 36 3.5
gb|AF466199.1| Sorghum bicolor putative receptor protein ki... 36 3.5
>gb|BI076241.1|BI076241 IP1_27_F09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 575
Score = 418 bits (211), Expect = e-115
Identities = 248/259 (95%), Gaps = 1/259 (0%)
Strand = Plus / Plus
Query: 12 ttgccacataggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg- 70
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgccacataggcctgctcaagatagtgcttttgctgttgctcgtttttatcaacgtggt 376
Query: 71 ggaagcttacaaaattattacatgtattttggtggaaccaattttgagcggacagctggt 130
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 ggaagctttcaaaactattacatgtattttggtggaacaaattttgagcggacagctggt 436
Query: 131 ggtccacttcagataactagctatgattatgatgcaccaattgacgaatatggtatctta 190
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 437 ggtccacttcagataactagctatgattatgatgcaccaatcgatgaatacggtatctta 496
Query: 191 agacaacctaagtgggggcatttgaaagacctacatgcagctattaaactttgtgaatca 250
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 497 aggcaacctaagtgggggcatttgaaagacctacatgcagctattaaactgtgtgaacca 556
Query: 251 gctcttactgcagtagatg 269
|||||||||||||||||||
Sbjct: 557 gctcttactgcagtagatg 575
>gb|BG947964.1|BG947964 IP1_7_F09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 562
Score = 392 bits (198), Expect = e-107
Identities = 235/246 (95%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 12 ttgccacataggcctgctcaagacagtgcttttgctgttgctcgtttttatcaacgtgg- 70
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgccacataggcctgctcaagatagtgcttttgctgttgctcgtttttatcaacgtggt 376
Query: 71 ggaagcttacaaaattattacatgtattttggtggaaccaattttgagcggacagctggt 130
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 ggaagctttcaaaactattacatgtattttggtggaacaaattttgagcggacagctggt 436
Query: 131 ggtccacttcagataactagctatgattatgatgcaccaattgacgaatatggtatctta 190
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 437 ggtccacttcagataactagctatgattatgatgcaccaatcgatgaatacggtatctta 496
Query: 191 agacaacctaagtgggggcatttgaaagacctacatgcagctattaaactttgtgaatca 250
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 497 aggcaacctaagtgggggcatttgaaagacctacatgcagctattaaactgtgtgaacca 556
Query: 251 gctctt 256
||||||
Sbjct: 557 gctctt 562
>gb|CL155712.1|CL155712 104_342_10782352_116_31474_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782352, DNA
sequence
Length = 724
Score = 361 bits (182), Expect = 5e-098
Identities = 197/202 (97%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 677 aggcacatgtatattcaagtgaaaatgtccacacaaatggaagcatttcaggaaatgcac 618
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 617 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtttggattt 558
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 498
Query: 486 tggcttttaatacagccagggt 507
|||||||||||||||| |||||
Sbjct: 497 tggcttttaatacagcgagggt 476
>gb|CW138948.1|CW138948 104_528_11134971_116_34890_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134971, DNA
sequence
Length = 610
Score = 361 bits (182), Expect = 5e-098
Identities = 197/202 (97%)
Strand = Plus / Minus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 274 aggcacatgtatattcaagtgaaaatgtccacacaaatggaagcatttcaggaaatgcac 215
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 214 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtttggattt 155
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttggaaaatcttatagtctaccaccatggtctgtgagcatactaccagactgtgaaactg 95
Query: 486 tggcttttaatacagccagggt 507
|||||||||||||||| |||||
Sbjct: 94 tggcttttaatacagcgagggt 73
>gb|CW138949.1|CW138949 104_528_11134971_148_34894_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134971, DNA
sequence
Length = 706
Score = 258 bits (130), Expect = 5e-067
Identities = 157/166 (94%)
Strand = Plus / Plus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 541 aggcacatgtatattcaagtgaaaatgtccacacaaatggaagcatttcaggaaatgcac 600
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggattt 425
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 601 agttttgctcagcttttctttgcaacattgatgaacataaatatgcttcagtttggattt 660
Query: 426 ttggaaaatcttatagtctaccaccatggtctgtgagcatactacc 471
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 661 ttggaaaaatctatagtctaccaccatggtctgtgagcatactacc 706
>gb|CW073953.1|CW073953 104_342_10782352_114_31473_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782352, DNA
sequence
Length = 740
Score = 204 bits (103), Expect = 7e-051
Identities = 115/119 (96%)
Strand = Plus / Plus
Query: 306 aggcacatgtgtattccagtgaaaatgtccacacaaatggaagcatttcaggaaattcac 365
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 622 aggcacatgtatattcaagtgaaaatgtccacacaaatggaagcatttcaggaaatgcac 681
Query: 366 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtctggatt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 682 agttttgctcagcttttcttgccaacattgatgaacataaatatgcttcagtttggatt 740
>gb|BG462949.1|BG462949 EM1_46_F07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 202 bits (102), Expect = 3e-050
Identities = 122/129 (94%)
Strand = Plus / Plus
Query: 460 gagcatactaccagactgtgaaactgtggcttttaatacagccagggttggtacacaaac 519
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9 gagcatactaccagactgtgaaactgtggcttttaatacagcgagggttggtacacaaac 68
Query: 520 atcgnttttcaatgtcgaatctgggtcccccagctattcaagtaggcataaacctagaat 579
||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 69 gtcgttttttaatgtcgaatctgggtcccccagttattcaagtagacataagcctagaat 128
Query: 580 tctatccct 588
|||||||||
Sbjct: 129 tctatccct 137
>gb|BG557835.1|BG557835 EM1_55_A02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 251
Score = 202 bits (102), Expect = 3e-050
Identities = 122/129 (94%)
Strand = Plus / Plus
Query: 460 gagcatactaccagactgtgaaactgtggcttttaatacagccagggttggtacacaaac 519
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9 gagcatactaccagactgtgaaactgtggcttttaatacagcgagggttggtacacaaac 68
Query: 520 atcgnttttcaatgtcgaatctgggtcccccagctattcaagtaggcataaacctagaat 579
||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 69 gtcgttttttaatgtcgaatctgggtcccccagttattcaagtagacataagcctagaat 128
Query: 580 tctatccct 588
|||||||||
Sbjct: 129 tctatccct 137
>gb|CW270701.1|CW270701 104_742_11402580_116_35333_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402580, DNA
sequence
Length = 650
Score = 196 bits (99), Expect = 2e-048
Identities = 120/127 (94%)
Strand = Plus / Plus
Query: 182 ggtatcttaagacaacctaagtgggggcatttgaaagacctacatgcagctattaaactt 241
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggtatcttaaggcaacctaagtgggggcatttgaaagacctacatgcagctattaaactg 297
Query: 242 tgtgaatcagctcttactgcagtagatggttcacctcattatgtaaaattagggcccatg 301
|||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||
Sbjct: 298 tgtgaaccagctcttactgcagtagatggctcacctcgttatataaaattagggcccatg 357
Query: 302 caggagg 308
|| ||||
Sbjct: 358 caagagg 364
Score = 153 bits (77), Expect = 2e-035
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 94 gtattttggtggaaccaattttgagcggacagctggtggtccacttcagataactagcta 153
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gtattttggtggaacaaattttgagcggacagctggtggtccacttcagataactagcta 138
Query: 154 tgattatgatgcaccaattgacgaatatggtat 186
|||||||||||||||||| || ||||| |||||
Sbjct: 139 tgattatgatgcaccaatcgatgaatacggtat 171
>gb|BE125108.1|BE125108 DG1_16_F11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 95.6 bits (48), Expect = 4e-018
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 525 ttttcaatgtcgaatctgggtcccccagctattcaagtaggcataaacctagaattctat 584
|||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 28 tttttaatgtcgaatctgggtcccccagttattcaagtagacataagcctagaattctat 87
Query: 585 ccct 588
||||
Sbjct: 88 ccct 91
>gb|BZ625803.1|BZ625803 ih40h10.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih40h10 5', DNA sequence
Length = 613
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggt 184
|||||||||||| ||||||||||||||||| |||||||||
Sbjct: 381 aactagctatgactatgatgcaccaattgatgaatatggt 420
>gb|CW249019.1|CW249019 104_710_11222618_148_35036_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222618, DNA
sequence
Length = 735
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggt 184
|||||||||||| ||||||||||||||||| |||||||||
Sbjct: 252 aactagctatgactatgatgcaccaattgatgaatatggt 291
>gb|BG050225.1|BG050225 FM1_68_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 466
Score = 61.9 bits (31), Expect = 6e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatgg 183
|||||||||||| ||||||||||||||||| ||||||||
Sbjct: 126 aactagctatgactatgatgcaccaattgatgaatatgg 164
>gb|CW156783.1|CW156783 104_559_11146874_116_36378_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146874, DNA
sequence
Length = 687
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| |||||||| ||||||||||
Sbjct: 102 agctatgattatgatgctccaattgatgaatatggta 138
>gb|CW424123.1|CW424123 fsbb001f134e21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f134e21, DNA
sequence
Length = 737
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| |||||||| ||||||||||
Sbjct: 594 agctatgattatgatgctccaattgatgaatatggta 558
>gb|BF421002.1|BF421002 FM1_5_A09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 537
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| |||||||| ||||||||
Sbjct: 14 agctatgattatgatgctccaattgatgaatatgg 48
>gb|BF421012.1|BF421012 FM1_5_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 424
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| |||||||| ||||||||
Sbjct: 14 agctatgattatgatgctccaattgatgaatatgg 48
>gb|BG241764.1|BG241764 RHIZ2_50_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 477
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| |||||||| ||||||||
Sbjct: 94 agctatgattatgatgctccaattgatgaatatgg 128
>gb|BG465638.1|BG465638 RHIZ2_46_H10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 543
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| |||||||| ||||||||
Sbjct: 94 agctatgattatgatgctccaattgatgaatatgg 128
>gb|BI211411.1|BI211411 IP1_60_D09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| |||||||| ||||||||
Sbjct: 407 agctatgattatgatgctccaattgatgaatatgg 441
>gb|CD228647.1|CD228647 CCC1_8_F12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_F12_A007 5', mRNA sequence
Length = 616
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| |||||||| ||||||||
Sbjct: 96 agctatgattatgatgctccaattgatgaatatgg 130
>gb|BZ343113.1|BZ343113 ho34h02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho34h02 5', DNA sequence
Length = 173
Score = 38.2 bits (19), Expect = 0.88
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 447 caccatggtctgtgagcatacta 469
|||||||||| ||||||||||||
Sbjct: 108 caccatggtccgtgagcatacta 130
>gb|BZ343120.1|BZ343120 ho35a01.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho35a01 5', DNA sequence
Length = 430
Score = 38.2 bits (19), Expect = 0.88
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 447 caccatggtctgtgagcatacta 469
|||||||||| ||||||||||||
Sbjct: 154 caccatggtccgtgagcatacta 176
>gb|CW318712.1|CW318712 104_811_11474096_148_35885_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474096, DNA
sequence
Length = 695
Score = 38.2 bits (19), Expect = 0.88
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 422 atttttggaaaatcttata 440
|||||||||||||||||||
Sbjct: 586 atttttggaaaatcttata 568
>gb|CW472526.1|CW472526 fsbb001f227i02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227i02, DNA
sequence
Length = 781
Score = 38.2 bits (19), Expect = 0.88
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 200 aagtgggggcatttgaaag 218
|||||||||||||||||||
Sbjct: 120 aagtgggggcatttgaaag 138
>gb|BZ337552.1|BZ337552 ia89a09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia89a09 5', DNA sequence
Length = 635
Score = 36.2 bits (18), Expect = 3.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 470 ccagactgtgaaactgtg 487
||||||||||||||||||
Sbjct: 152 ccagactgtgaaactgtg 135
>gb|CW175753.1|CW175753 104_588_11158117_148_36579_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158117, DNA
sequence
Length = 552
Score = 36.2 bits (18), Expect = 3.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 436 ttatagtctaccaccatg 453
||||||||||||||||||
Sbjct: 329 ttatagtctaccaccatg 312
>gb|CW264823.1|CW264823 104_733_11231517_116_35255_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231517, DNA
sequence
Length = 573
Score = 36.2 bits (18), Expect = 3.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 394 tgatgaacataaatatgc 411
||||||||||||||||||
Sbjct: 429 tgatgaacataaatatgc 412
>gb|CW412531.1|CW412531 fsbb001f108d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f108d07, DNA
sequence
Length = 578
Score = 36.2 bits (18), Expect = 3.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 68 tggggaagcttacaaaat 85
||||||||||||||||||
Sbjct: 122 tggggaagcttacaaaat 105
>gb|CW484981.1|CW484981 fsbb001f247h11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f247h11, DNA
sequence
Length = 517
Score = 36.2 bits (18), Expect = 3.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 394 tgatgaacataaatatgc 411
||||||||||||||||||
Sbjct: 208 tgatgaacataaatatgc 225
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,
aminoalcoholphosphotransferase, putative growth-regulating
factor 1, putative GAG-POL precursor, putative GAG-POL
precursor, putative RIRE2 orf3, putative anthocyanin
regulatory C1, putative protein T30F21.6, putative copia
polyprotein, putative copia polyprotein, putative protein
NP_196765.1, and gb protein genes, complete cds; and
putative zinc finger protein gene, partial cds
Length = 144159
Score = 36.2 bits (18), Expect = 3.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 249 cagctcttactgcagtag 266
||||||||||||||||||
Sbjct: 110732 cagctcttactgcagtag 110715
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,668
Number of Sequences: 832831
Number of extensions: 137668
Number of successful extensions: 36645
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36597
Number of HSP's gapped (non-prelim): 46
length of query: 588
length of database: 491,359,669
effective HSP length: 19
effective length of query: 569
effective length of database: 475,535,880
effective search space: 270579915720
effective search space used: 270579915720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)