BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX177283.1|CX177283 B04_69-106_04.ab1 leaf inoculated wi... 76 2e-012
gb|BI138876.1|BI138876 F118P18Y Populus flower cDNA library... 54 7e-006
gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZA... 50 1e-004
gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA libr... 46 0.002
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 44 0.006
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.025
gb|AJ771508.1|AJ771508 AJ771508 Populus euphratica root 3-6... 42 0.025
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.098
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.39
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.39
gb|AJ770030.1|AJ770030 AJ770030 Populus euphratica leaf 3-6... 38 0.39
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.39
>gb|CX177283.1|CX177283 B04_69-106_04.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 588
Score = 75.8 bits (38), Expect = 2e-012
Identities = 143/178 (80%)
Strand = Plus / Minus
Query: 178 tcatcatctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcat 237
||||||||||||||||||| |||| | ||| |||| | || || ||||| || || |||
Sbjct: 295 tcatcatctggcattcctggttgccttggacgcttagatctaaagaatggaggaggacat 236
Query: 238 atataaaatggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctca 297
||| |||| || | || ||||||||||||||||||||| || || || |||| || |||
Sbjct: 235 ataaaaaacggagcagtaactggttcaatctcccatattgagactcgattgcgtctttca 176
Query: 298 gatgcagtcgattcatcccaaccaacctgaaggtttcgccaatgagaattcttccatc 355
||||| |||||||||||||||||||| | || ||||| || ||||| |||||||
Sbjct: 175 ccagcagttgattcatcccaaccaacctgcaaattacgccattgtgaatttttccatc 118
>gb|BI138876.1|BI138876 F118P18Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 289
Score = 54.0 bits (27), Expect = 7e-006
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 490 aaagggatgacaaattctgatgggcntgcccttggattatagaaaatagtaaatggncta 549
||||| |||||||| ||||| |||| |||||||||||| || ||||| || ||||| ||
Sbjct: 127 aaaggaatgacaaagtctgaagggcatgcccttggattgtaaaaaatggtgaatgggctt 186
Query: 550 ctatttgcagcagcatg 566
| ||| |||| ||||||
Sbjct: 187 cgattggcagtagcatg 203
>gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 520
Score = 50.1 bits (25), Expect = 1e-004
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 496 atgacaaattctgatgggcntgcccttggattatagaaaatagtaaatggnctactattt 555
|||||||| ||||| |||| |||||||||||| || ||||| || ||||| || | |||
Sbjct: 474 atgacaaagtctgaagggcatgcccttggattgtaaaaaatggtgaatgggcttcgattg 415
Query: 556 gcagcagcatg 566
||||||||||
Sbjct: 414 ccagcagcatg 404
>gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F126P27 3', mRNA sequence
Length = 860
Score = 46.1 bits (23), Expect = 0.002
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 490 aaagggatgacaaattctgatgggcntgcccttggatt 527
||||| |||||||| ||||| |||| ||||||||||||
Sbjct: 830 aaaggaatgacaaagtctgaagggcatgcccttggatt 793
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtacag 22
||||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtacag 291
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtaca 624
Score = 40.1 bits (20), Expect = 0.098
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtac 656
>gb|AJ771508.1|AJ771508 AJ771508 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600002A12F1, mRNA sequence
Length = 330
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtacagcag 25
|||||||||||||||||||||
Sbjct: 310 ccgcccgggcaggtacagcag 290
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.098
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtac 479
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.39
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.39
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|AJ770030.1|AJ770030 AJ770030 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006A02F1, mRNA sequence
Length = 245
Score = 38.2 bits (19), Expect = 0.39
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 1 gcggccgcccggg-caggtacagcagg 26
||||||||||||| |||||||||||||
Sbjct: 245 gcggccgcccgggccaggtacagcagg 219
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
TIR1 (TIR1) mRNA, complete cds
Length = 2646
Score = 38.2 bits (19), Expect = 0.39
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,332
Number of Sequences: 369679
Number of extensions: 70332
Number of successful extensions: 21104
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21084
Number of HSP's gapped (non-prelim): 19
length of query: 626
length of database: 203,408,664
effective HSP length: 19
effective length of query: 607
effective length of database: 196,384,763
effective search space: 119205551141
effective search space used: 119205551141
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)