BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM14d12.yg.2.1
(593 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 90 1e-016
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 80 1e-013
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 74 7e-012
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 68 4e-010
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 60 1e-007
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 58 4e-007
gb|AY573574.1| Populus tremula x Populus tremuloides cellul... 56 2e-006
gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA librar... 54 6e-006
gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus ... 52 2e-005
gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cD... 48 4e-004
gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium... 48 4e-004
gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6... 48 4e-004
gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6... 48 4e-004
gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6... 48 4e-004
gb|AF072131.1|AF072131 Populus tremuloides secondary xylem ... 48 4e-004
gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1)... 48 4e-004
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 46 0.002
gb|CV228438.1|CV228438 WS01910.B21_B15 PT-DX-N-A-10 Populus... 44 0.006
gb|DT500162.1|DT500162 PX0011.BR_G15 PT-X-FL-A-1 Populus tr... 42 0.024
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 89.7 bits (45), Expect = 1e-016
Identities = 164/205 (80%)
Strand = Plus / Minus
Query: 354 atagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttctt 413
|||||||| |||||||||||||||||||| ||||| ||||| || || || ||||
Sbjct: 1810 atagtcaaccttctgagcaaaataccattctggagctcgaggttcaatgctgaacctctt 1751
Query: 414 acagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaag 473
||||| || ||||| |||| ||||||| | |||| || | | ||||||||||||||
Sbjct: 1750 gcagaaagggacccactttcttgcaaattcagatgtctcagagatagcttcaaaagtaag 1691
Query: 474 cattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnnacagc 533
||| |||||||||||||| || |||||||| |||||| || || ||||||| |||||
Sbjct: 1690 catggcagcaccatcatctgagacatagcatgcaactttttcgactggataatctacagc 1631
Query: 534 nagtatggacaaaactgtgtntgca 558
|| |||||||| ||||||| ||||
Sbjct: 1630 aaggatggacaagactgtgtttgca 1606
>gb|AY573573.2| Populus tremula x Populus tremuloides cellulose synthase (CesA3-1)
mRNA, complete cds
Length = 3250
Score = 79.8 bits (40), Expect = 1e-013
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 462 ttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacagg 521
|||||| |||||||| |||||||||||||| |||||||||||| |||||||||| || ||
Sbjct: 952 ttcaaatgtaagcatagcagcaccatcatcagacacatagcaggaaactttatccacggg 893
Query: 522 ataatnnacagcnagtatgga 542
||| | ||||| || |||||
Sbjct: 892 atagtccacagcaaggatgga 872
>gb|AY162180.1| Populus tremuloides cellulose synthase (CesA7) mRNA, complete cds
Length = 3809
Score = 73.8 bits (37), Expect = 7e-012
Identities = 190/241 (78%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcgttctcgaacaaactctgggtgaaccttt 345
|||||||| |||||||||||||| ||||| | ||| | ||||| |||| ||||| ||
Sbjct: 1597 aattcttcatattctctcttcatggcacgcctttccctgacaaatgctggatgaacttta 1538
Query: 346 tctcttagatagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttg 405
| | | | ||||||||| ||||||| ||||||||| ||||| || || |||||||| ||
Sbjct: 1537 tttttcaaatagtcaatcttctgagaaaaataccactcaggggcacggggctcgatgtta 1478
Query: 406 tgtttcttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttca 465
|||||| || || |||||||| || | |||||| | | || || | || ||||||
Sbjct: 1477 aatttcttgcaaaatggaacccacttcctagcaaattcagacgtctcggagagagcttca 1418
Query: 466 aaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataa 525
|| |||||||| || |||||||| || ||||||||||| ||||||||| |||||||||
Sbjct: 1417 aatgtaagcatggcggcaccatcgtctgacacatagcatgcaactttatccacaggataa 1358
Query: 526 t 526
|
Sbjct: 1357 t 1357
>gb|AY573575.1| Populus tremula x Populus tremuloides cellulose synthase (CesA4)
mRNA, complete cds
Length = 3778
Score = 67.9 bits (34), Expect = 4e-010
Identities = 187/238 (78%)
Strand = Plus / Minus
Query: 289 tcttcgtattctctcttcattgcacgtcgttctcgaacaaactctgggtgaaccttttct 348
||||| |||||||||||||| ||||| | ||| | ||||| |||| ||||| || | |
Sbjct: 1628 tcttcatattctctcttcatggcacgcctttccctgacaaatgctggatgaactttattt 1569
Query: 349 cttagatagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgt 408
| | ||||||||| ||||||| ||||||||| ||||| || || |||||||| || |
Sbjct: 1568 ttcaaatagtcaatcttctgagaaaaataccactcaggggcacggggctcgatgttaaat 1509
Query: 409 ttcttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaa 468
||||| || || |||||||| || | |||||| | | || || | || ||||||||
Sbjct: 1508 ttcttgcaaaatggaacccacttcctagcaaattcagacgtctcggagagagcttcaaat 1449
Query: 469 gtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
|||||||| || |||||||| || ||||||||||| ||||||||| ||||||||||
Sbjct: 1448 gtaagcatggcggcaccatcgtctgacacatagcatgcaactttatccacaggataat 1391
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 60.0 bits (30), Expect = 1e-007
Identities = 119/150 (79%)
Strand = Plus / Minus
Query: 408 tttcttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaa 467
|||||||||||| || |||||||| ||||||| | ||||||||| | ||| |||||
Sbjct: 1336 tttcttacagaatgggacccatttctttgcaaattcagatgtttctgacaatgcctcaaa 1277
Query: 468 agtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatn 527
|| ||||| |||||||||||||| || ||||| || |||| || |||||||| ||||
Sbjct: 1276 tgtcagcatagcagcaccatcatcagaaacataacatgaaaccttgtcaacagggtaatc 1217
Query: 528 nacagcnagtatggacaaaactgtgtntgc 557
|| || || ||||||| ||| |||| |||
Sbjct: 1216 aactgcaagaatggacagaaccgtgtttgc 1187
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds
Length = 3532
Score = 58.0 bits (29), Expect = 4e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 355 tagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttctta 414
|||||||| || || ||||| |||||||| |||||||||||||| || ||| |||||
Sbjct: 1539 tagtcaatcttttgtgcaaagtaccattctggagcccgaggctcaatgctgtacttcttg 1480
Query: 415 cagaagggaacccattt 431
|||||||| ||||||||
Sbjct: 1479 cagaagggcacccattt 1463
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagca 503
|||||||| || | |||||||||||||||||| || ||||||||
Sbjct: 1434 gcttcaaatgtcaacattgcagcaccatcatcagagacatagca 1391
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 283 ttaaattcttcgtattctctcttcat 308
||||||||||| ||||||||||||||
Sbjct: 1611 ttaaattcttcatattctctcttcat 1586
>gb|AY573574.1| Populus tremula x Populus tremuloides cellulose synthase (CesA3-2)
mRNA, complete cds
Length = 3358
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 462 ttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacagg 521
|||||| | |||||| || ||||||||||| ||||| |||||| |||||||||| || ||
Sbjct: 1035 ttcaaatgaaagcatagctgcaccatcatcagacacgtagcaggaaactttatcgacggg 976
Query: 522 ataatnnacagcnagtatgga 542
||| | ||||| || |||||
Sbjct: 975 atagtccacagcaaggatgga 955
>gb|CF235713.1|CF235713 PtaJXT0026B7B0703 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 639
Score = 54.0 bits (27), Expect = 6e-006
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 278 gaaccttaaattcttcgtattctctcttcat 308
||||||| |||||||||||||||||||||||
Sbjct: 47 gaaccttgaattcttcgtattctctcttcat 17
Score = 42.1 bits (21), Expect = 0.024
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 43 gcattcaaggcaccagcttttttatgatg 71
||||||| |||||| ||||||||||||||
Sbjct: 282 gcattcatggcaccggcttttttatgatg 254
>gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 5', mRNA sequence
Length = 912
Score = 52.0 bits (26), Expect = 2e-005
Identities = 83/102 (81%)
Strand = Plus / Minus
Query: 332 ctgggtgaaccttttctcttagatagtcaattttctgagcaaaataccattcaggagccc 391
|||| |||||||| ||| ||| |||||||| || ||||| || |||||||| ||||| |
Sbjct: 908 ctggatgaaccttgtcttttaagtagtcaatcttttgagcgaagtaccattctggagctc 849
Query: 392 gaggctcgattttgtgtttcttacagaagggaacccattttc 433
| ||||| || | | |||||| ||||| |||||||||||||
Sbjct: 848 gcggctcaatatcatatttcttgcagaaaggaacccattttc 807
>gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 280 accttaaattcttcgtattctctcttcattgc 311
||||| |||||||| |||||||||||||||||
Sbjct: 246 accttgaattcttcatattctctcttcattgc 215
>gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB51DPD11 5', mRNA sequence
Length = 596
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 280 accttaaattcttcgtattctctcttcattgc 311
||||| |||||||| |||||||||||||||||
Sbjct: 244 accttgaattcttcatattctctcttcattgc 213
>gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400040H10F1, mRNA sequence
Length = 612
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 280 accttaaattcttcgtattctctcttcattgc 311
||||| |||||||| |||||||||||||||||
Sbjct: 252 accttgaattcttcatattctctcttcattgc 221
>gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800003H02F1, mRNA sequence
Length = 713
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 280 accttaaattcttcgtattctctcttcattgc 311
||||| |||||||| |||||||||||||||||
Sbjct: 231 accttgaattcttcatattctctcttcattgc 200
>gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800009G06F1, mRNA sequence
Length = 735
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 280 accttaaattcttcgtattctctcttcattgc 311
||||| |||||||| |||||||||||||||||
Sbjct: 254 accttgaattcttcatattctctcttcattgc 223
>gb|AF072131.1|AF072131 Populus tremuloides secondary xylem cellulose synthase (celA) mRNA,
complete cds
Length = 3232
Score = 48.1 bits (24), Expect = 4e-004
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 462 ttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacagg 521
|||||| | |||||| || ||||||||||| ||||| |||||| | |||||||| || ||
Sbjct: 974 ttcaaatgaaagcatagctgcaccatcatcagacacgtagcaggagactttatcgacggg 915
Query: 522 ataatnnacagcnagtatgga 542
||| | ||||| || |||||
Sbjct: 914 atagtccacagcaaggatgga 894
>gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1) mRNA, complete cds
Length = 3215
Score = 48.1 bits (24), Expect = 4e-004
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 462 ttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacagg 521
|||||| | |||||| || ||||||||||| ||||| |||||| | |||||||| || ||
Sbjct: 957 ttcaaatgaaagcatagctgcaccatcatcagacacgtagcaggagactttatcgacggg 898
Query: 522 ataatnnacagcnagtatgga 542
||| | ||||| || |||||
Sbjct: 897 atagtccacagcaaggatgga 877
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 278 gaaccttaaattcttcgtattctctcttcat 308
||||||| |||||||| ||||||||||||||
Sbjct: 1338 gaaccttgaattcttcatattctctcttcat 1308
>gb|CV228438.1|CV228438 WS01910.B21_B15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01910_B15 3', mRNA sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 408 tttcttacagaagggaacccattttcgtgcaaat 441
|||||| ||||| |||||||||||||| ||||||
Sbjct: 12 tttcttgcagaatggaacccattttcgagcaaat 45
>gb|DT500162.1|DT500162 PX0011.BR_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G15 5', mRNA sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.024
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 43 gcattcaaggcaccagcttttttatgatg 71
||||||| |||||| ||||||||||||||
Sbjct: 49 gcattcatggcaccggcttttttatgatg 21
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,142
Number of Sequences: 369679
Number of extensions: 72142
Number of successful extensions: 18322
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18290
Number of HSP's gapped (non-prelim): 32
length of query: 593
length of database: 203,408,664
effective HSP length: 19
effective length of query: 574
effective length of database: 196,384,763
effective search space: 112724853962
effective search space used: 112724853962
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)