BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV234217.1|CV234217 WS01214.B21_B13 PT-GT-FL-A-3 Populus... 46 0.001
gb|CV235270.1|CV235270 WS01218.B21_H07 PT-GT-FL-A-3 Populus... 46 0.001
gb|CV238245.1|CV238245 WS0125.B21_N16 PT-GT-FL-A-3 Populus ... 46 0.001
gb|CV238311.1|CV238311 WS0126.B21_C03 PT-GT-FL-A-3 Populus ... 46 0.001
gb|DT475055.1|DT475055 WS0125.BR_N16 PT-GT-FL-A-3 Populus t... 46 0.001
gb|DT507297.1|DT507297 WS02417.BR_O04 PTxD-ICC-N-A-14 Popul... 46 0.001
gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichoca... 42 0.021
gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA librar... 40 0.081
gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA librar... 40 0.081
gb|CF228296.1|CF228296 PtaXM0011D10D1008 Poplar cDNA librar... 40 0.081
gb|BP931353.1|BP931353 BP931353 full-length enriched poplar... 40 0.081
gb|BP935110.1|BP935110 BP935110 full-length enriched poplar... 40 0.081
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 40 0.081
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 40 0.081
>gb|CV234217.1|CV234217 WS01214.B21_B13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_B13 3', mRNA sequence
Length = 654
Score = 46.1 bits (23), Expect = 0.001
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagc 469
||||||||||| |||| |||||||| || |||||| |||| ||| ||||||
Sbjct: 513 cccttgaggaatgggtagaggtggatgatgacccacaaggcgaaaaacagc 563
>gb|CV235270.1|CV235270 WS01218.B21_H07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_H07 3', mRNA sequence
Length = 695
Score = 46.1 bits (23), Expect = 0.001
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagc 469
||||||||||| |||| |||||||| || |||||| |||| ||| ||||||
Sbjct: 478 cccttgaggaatgggtagaggtggatgatgacccacaaggcgaaaaacagc 528
>gb|CV238245.1|CV238245 WS0125.B21_N16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_N16 3', mRNA sequence
Length = 687
Score = 46.1 bits (23), Expect = 0.001
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagc 469
||||||||||| |||| |||||||| || |||||| |||| ||| ||||||
Sbjct: 478 cccttgaggaatgggtagaggtggatgatgacccacaaggcgaaaaacagc 528
>gb|CV238311.1|CV238311 WS0126.B21_C03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_C03 3', mRNA sequence
Length = 619
Score = 46.1 bits (23), Expect = 0.001
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagc 469
||||||||||| |||| |||||||| || |||||| |||| ||| ||||||
Sbjct: 478 cccttgaggaatgggtagaggtggatgatgacccacaaggcgaaaaacagc 528
>gb|DT475055.1|DT475055 WS0125.BR_N16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_N16 5', mRNA sequence
Length = 595
Score = 46.1 bits (23), Expect = 0.001
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagc 469
||||||||||| |||| |||||||| || |||||| |||| ||| ||||||
Sbjct: 592 cccttgaggaatgggtagaggtggatgatgacccacaaggcgaaaaacagc 542
>gb|DT507297.1|DT507297 WS02417.BR_O04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_O04 5', mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.001
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagc 469
||||||||||| |||| |||||||| || |||||| |||| ||| ||||||
Sbjct: 111 cccttgaggaatgggtagaggtggatgatgacccacaaggcgaaaaacagc 61
>gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_H23 5', mRNA sequence
Length = 833
Score = 42.1 bits (21), Expect = 0.021
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 422 ttgaggaacgggtggaggtggaggacgacccagaagg 458
|||||||| |||| ||||||||||| |||||| ||||
Sbjct: 384 ttgaggaaggggtagaggtggaggatgacccataagg 348
>gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 502
Score = 40.1 bits (20), Expect = 0.081
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 422 ttgaggaacgggtggaggtggaggacgaccca 453
|||||||| |||| ||||||||||| ||||||
Sbjct: 364 ttgaggaaggggtagaggtggaggatgaccca 333
>gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.081
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 422 ttgaggaacgggtggaggtggaggacgaccca 453
|||||||| |||| ||||||||||| ||||||
Sbjct: 364 ttgaggaaggggtagaggtggaggatgaccca 333
>gb|CF228296.1|CF228296 PtaXM0011D10D1008 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.081
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 422 ttgaggaacgggtggaggtggaggacgaccca 453
|||||||| |||| ||||||||||| ||||||
Sbjct: 99 ttgaggaaggggtagaggtggaggatgaccca 68
>gb|BP931353.1|BP931353 BP931353 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-022_F10.r 3', mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.081
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 422 ttgaggaacgggtggaggtggaggacgaccca 453
|||||||| |||| ||||||||||| ||||||
Sbjct: 370 ttgaggaaggggtagaggtggaggatgaccca 401
>gb|BP935110.1|BP935110 BP935110 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-073_N03.r 3', mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.081
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 422 ttgaggaacgggtggaggtggaggacgaccca 453
|||||||| |||| ||||||||||| ||||||
Sbjct: 371 ttgaggaaggggtagaggtggaggatgaccca 402
>gb|AY573575.1| Populus tremula x Populus tremuloides cellulose synthase (CesA4)
mRNA, complete cds
Length = 3778
Score = 40.1 bits (20), Expect = 0.081
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 422 ttgaggaacgggtggaggtggaggacgaccca 453
|||||||| |||| ||||||||||| ||||||
Sbjct: 3335 ttgaggaaggggtagaggtggaggatgaccca 3304
>gb|AY162180.1| Populus tremuloides cellulose synthase (CesA7) mRNA, complete cds
Length = 3809
Score = 40.1 bits (20), Expect = 0.081
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 422 ttgaggaacgggtggaggtggaggacgaccca 453
|||||||| |||| ||||||||||| ||||||
Sbjct: 3301 ttgaggaaggggtagaggtggaggatgaccca 3270
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,221
Number of Sequences: 369679
Number of extensions: 59221
Number of successful extensions: 16930
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16911
Number of HSP's gapped (non-prelim): 19
length of query: 520
length of database: 203,408,664
effective HSP length: 19
effective length of query: 501
effective length of database: 196,384,763
effective search space: 98388766263
effective search space used: 98388766263
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)