BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK13d03.yg.3.1
(2611 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA927368.1|CA927368 MTU6CR.P8.B08 Aspen root cDNA Librar... 163 4e-038
gb|CA927820.1|CA927820 MTU6TR.P13.C11 Aspen root cDNA Libra... 163 4e-038
gb|CA928249.1|CA928249 MTU6TR.P18.D08 Aspen root cDNA Libra... 163 4e-038
gb|CA928310.1|CA928310 MTU6TR.P1.B02 Aspen root cDNA Librar... 163 4e-038
gb|DT472323.1|DT472323 WS01225.BR_L03 PT-GT-FL-A-3 Populus ... 163 4e-038
gb|DT474130.1|DT474130 WS01230.BR_O13 PT-GT-FL-A-3 Populus ... 153 4e-035
gb|CA930378.1|CA930378 MTU4CA.P21.H03 Aspen apex cDNA Libra... 72 1e-010
gb|CA928786.1|CA928786 MTU6TR.P6.G11 Aspen root cDNA Librar... 64 3e-008
gb|BI131896.1|BI131896 G127P23Y Populus cambium cDNA librar... 54 3e-005
gb|CK103689.1|CK103689 G127P23.5pR Populus tension wood cDN... 54 3e-005
gb|CN518918.1|CN518918 GQ0101.B3_D09 GQ010 Populus trichoca... 54 3e-005
gb|CX654334.1|CX654334 PO02018G07 Poplar SC cDNA library Po... 52 1e-004
gb|CX659757.1|CX659757 PO01013F12 Poplar SC cDNA library Po... 50 4e-004
gb|CA928193.1|CA928193 MTU6TR.P17.G08 Aspen root cDNA Libra... 46 0.007
gb|BI069214.1|BI069214 C033P76U Populus strain T89 leaves P... 44 0.027
gb|BU880261.1|BU880261 UM43TE12 Populus flower cDNA library... 42 0.11
gb|CV245172.1|CV245172 WS0256.B21_K20 PT-MB-N-A-15 Populus ... 42 0.11
gb|CX177195.1|CX177195 C03_69-75_05.ab1 leaf inoculated wit... 42 0.11
gb|CX178924.1|CX178924 C08_45-31_06.ab1 leaf inoculated wit... 42 0.11
gb|CX180142.1|CX180142 C08_45-22_06.ab1 leaf inoculated wit... 42 0.11
gb|CX180158.1|CX180158 G12_45-22_14.ab1 leaf inoculated wit... 42 0.11
gb|CX180471.1|CX180471 F03_45-118_11.ab1 leaf inoculated wi... 42 0.11
gb|CX185370.1|CX185370 B03_45-59_03.ab1 leaf inoculated wit... 42 0.11
gb|CX185613.1|CX185613 C12_45-9_06.ab1 leaf inoculated with... 42 0.11
gb|DT474633.1|DT474633 WS0124.BR_I04 PT-GT-FL-A-3 Populus t... 42 0.11
gb|DT487670.1|DT487670 WS02534.B21_F09 PT-MB-N-A-15 Populus... 42 0.11
gb|DT487779.1|DT487779 WS02534.B21_K05 PT-MB-N-A-15 Populus... 42 0.11
gb|DT490344.1|DT490344 WS02544.B21_L07 PT-MB-N-A-15 Populus... 42 0.11
gb|DT501297.1|DT501297 WS01312.BR_D24 PTxD-IL-FL-A-4 Populu... 42 0.11
gb|AY515150.1| Populus deltoides CONSTANS-like protein CO1 ... 42 0.11
>gb|CA927368.1|CA927368 MTU6CR.P8.B08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 666
Score = 163 bits (82), Expect = 4e-038
Identities = 157/182 (86%)
Strand = Plus / Plus
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|||||||| || |||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 168 cctcacaatgttgggcttggagctaccagggaccctaacctagttaagaggattggagct 227
Query: 839 gcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagcg 898
|||||||| ||||||||||||||||| || ||||| || | ||||| || ||||| |||
Sbjct: 228 gcaactgcacttgaagttagagctacaggcattccatatgtttttgcaccttgtattgcg 287
Query: 899 gtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaaggtt 958
|| ||| |||||||||||||||| || |||||||| ||||||||||| ||||| ||| ||
Sbjct: 288 gtttgtcgagatccaagatggggtcggtgctatgaaagctacagtgaagatcctaagctt 347
Query: 959 gt 960
||
Sbjct: 348 gt 349
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1064 aagcactatgtcggtgatggtggaac 1089
||||||||||| ||||||||||||||
Sbjct: 456 aagcactatgtgggtgatggtggaac 481
>gb|CA927820.1|CA927820 MTU6TR.P13.C11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 667
Score = 163 bits (82), Expect = 4e-038
Identities = 157/182 (86%)
Strand = Plus / Plus
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|||||||| || |||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 168 cctcacaatgttgggcttggagctaccagggaccctaacctagttaagaggattggagct 227
Query: 839 gcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagcg 898
|||||||| ||||||||||||||||| || ||||| || | ||||| || ||||| |||
Sbjct: 228 gcaactgcacttgaagttagagctacaggcattccatatgtttttgcaccttgtattgcg 287
Query: 899 gtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaaggtt 958
|| ||| |||||||||||||||| || |||||||| ||||||||||| ||||| ||| ||
Sbjct: 288 gtttgtcgagatccaagatggggtcggtgctatgaaagctacagtgaagatcctaagctt 347
Query: 959 gt 960
||
Sbjct: 348 gt 349
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1064 aagcactatgtcggtgatggtggaac 1089
||||||||||| ||||||||||||||
Sbjct: 456 aagcactatgtgggtgatggtggaac 481
>gb|CA928249.1|CA928249 MTU6TR.P18.D08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 626
Score = 163 bits (82), Expect = 4e-038
Identities = 157/182 (86%)
Strand = Plus / Plus
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|||||||| || |||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 168 cctcacaatgttgggcttggagctaccagggaccctaacctagttaagaggattggagct 227
Query: 839 gcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagcg 898
|||||||| ||||||||||||||||| || ||||| || | ||||| || ||||| |||
Sbjct: 228 gcaactgcacttgaagttagagctacaggcattccatatgtttttgcaccttgtattgcg 287
Query: 899 gtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaaggtt 958
|| ||| |||||||||||||||| || |||||||| ||||||||||| ||||| ||| ||
Sbjct: 288 gtttgtcgagatccaagatggggtcggtgctatgaaagctacagtgaagatcctaagctt 347
Query: 959 gt 960
||
Sbjct: 348 gt 349
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1064 aagcactatgtcggtgatggtggaac 1089
||||||||||| ||||||||||||||
Sbjct: 456 aagcactatgtgggtgatggtggaac 481
>gb|CA928310.1|CA928310 MTU6TR.P1.B02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 476
Score = 163 bits (82), Expect = 4e-038
Identities = 157/182 (86%)
Strand = Plus / Plus
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|||||||| || |||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 170 cctcacaatgttgggcttggagctaccagggaccctaacctagttaagaggattggagct 229
Query: 839 gcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagcg 898
|||||||| ||||||||||||||||| || ||||| || | ||||| || ||||| |||
Sbjct: 230 gcaactgcacttgaagttagagctacaggcattccatatgtttttgcaccttgtattgcg 289
Query: 899 gtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaaggtt 958
|| ||| |||||||||||||||| || |||||||| ||||||||||| ||||| ||| ||
Sbjct: 290 gtttgtcgagatccaagatggggtcggtgctatgaaagctacagtgaagatcctaagctt 349
Query: 959 gt 960
||
Sbjct: 350 gt 351
>gb|DT472323.1|DT472323 WS01225.BR_L03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_L03 5', mRNA sequence
Length = 882
Score = 163 bits (82), Expect = 4e-038
Identities = 157/182 (86%)
Strand = Plus / Plus
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|||||||| || |||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 475 cctcacaatgttgggcttggagctaccagggaccctaacctagttaagaggattggagct 534
Query: 839 gcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagcg 898
|||||||| ||||||||||||||||| || ||||| || | ||||| || ||||| |||
Sbjct: 535 gcaactgcacttgaagttagagctacaggcattccatatgtttttgcaccttgtattgcg 594
Query: 899 gtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaaggtt 958
|| ||| |||||||||||||||| || |||||||| ||||||||||| ||||| ||| ||
Sbjct: 595 gtttgtcgagatccaagatggggtcggtgctatgaaagctacagtgaagatcctaagctt 654
Query: 959 gt 960
||
Sbjct: 655 gt 656
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1064 aagcactatgtcggtgatggtggaac 1089
||||||||||| ||||||||||||||
Sbjct: 763 aagcactatgtgggtgatggtggaac 788
>gb|DT474130.1|DT474130 WS01230.BR_O13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_O13 5', mRNA sequence
Length = 863
Score = 153 bits (77), Expect = 4e-035
Identities = 164/193 (84%)
Strand = Plus / Plus
Query: 758 gtctacaaagctactattttccctcacaacgtcgggcttggagctaccagggaccctgac 817
|||||||| || || ||||| |||||||| || |||||||||| |||||||| ||| |
Sbjct: 538 gtctacaatgccaccatttttcctcacaatgttgggcttggagtgaccagggatcctcag 597
Query: 818 ctcgttaagagaattggagaagcaactgctcttgaagttagagctactggaattccttac 877
|| || || | ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 598 ctagtcaaaaagattggtgaagcaactgctcttgaagttagagctacaggaatcccttat 657
Query: 878 gcctttgctccctgtatagcggtctgtagagatccaagatggggacgctgctatgagagc 937
||||||||||| || || ||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 658 gcctttgctccgtgcatcgcggtttgcagggatccaagatggggtcgctgctatgaaagc 717
Query: 938 tacagtgaggatc 950
|| ||||||||||
Sbjct: 718 tatagtgaggatc 730
>gb|CA930378.1|CA930378 MTU4CA.P21.H03 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 683
Score = 71.9 bits (36), Expect = 1e-010
Identities = 99/120 (82%)
Strand = Plus / Minus
Query: 1283 aggggttttgtgatttccgactgggagggcattgatcggatcactactcctcctcacgcc 1342
||||||||||| || || || ||||||||||||||| |||||||| |||| || || ||
Sbjct: 493 aggggttttgtcatctcagattgggagggcattgataggatcacttctccaccccatgct 434
Query: 1343 aactactcttactcaattgaggctggtgttggtgctggaattgacatgatcatggttcca 1402
|||||||| || || ||| | || || | | |||||||||||||||||||||||||||
Sbjct: 433 aactactcatattccattcaagcaggaatcagcgctggaattgacatgatcatggttcca 374
>gb|CA928786.1|CA928786 MTU6TR.P6.G11 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 685
Score = 63.9 bits (32), Expect = 3e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 1283 aggggttttgtgatttccgactgggagggcattgatcggatcactactcctcctcacgcc 1342
||||||||||| || || || ||||||||||||||| |||||||| |||| || || ||
Sbjct: 495 aggggttttgtcatctcagattgggagggcattgataggatcacttctccaccccatgct 436
Query: 1343 aactactcttactcaattgaggctggtgttggtgctggaattgacatgatcatggttcca 1402
|||||||| || || ||| | || || | | ||||| |||||||||||||||||||||
Sbjct: 435 aactactcatattccattcaagcagggatcagcgctgggattgacatgatcatggttcca 376
>gb|BI131896.1|BI131896 G127P23Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 415
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1370 gttggtgctggaattgacatgatcatggttccatt 1404
|||| |||||||||||||||||| |||||||||||
Sbjct: 220 gttgatgctggaattgacatgattatggttccatt 254
>gb|CK103689.1|CK103689 G127P23.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G127P23 5', mRNA sequence
Length = 394
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1370 gttggtgctggaattgacatgatcatggttccatt 1404
|||| |||||||||||||||||| |||||||||||
Sbjct: 230 gttgatgctggaattgacatgattatggttccatt 264
>gb|CN518918.1|CN518918 GQ0101.B3_D09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_D09 5', mRNA sequence
Length = 584
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1370 gttggtgctggaattgacatgatcatggttccatt 1404
|||| |||||||||||||||||| |||||||||||
Sbjct: 421 gttgatgctggaattgacatgattatggttccatt 455
Score = 40.1 bits (20), Expect = 0.42
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 1262 ctcaagaacaagctcaagtttaggggttttgtgatttccgactgggagggcattga 1317
|||||||||||| | ||||| ||||| || ||||| || |||||| |||| |||||
Sbjct: 313 ctcaagaacaagatgaagttcaggggattcgtgatatcagactggcagggtattga 368
>gb|CX654334.1|CX654334 PO02018G07 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO02018G07 5', mRNA sequence
Length = 304
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1377 ctggaattgacatgatcatggttcca 1402
||||||||||||||||||||||||||
Sbjct: 1 ctggaattgacatgatcatggttcca 26
>gb|CX659757.1|CX659757 PO01013F12 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01013F12 5', mRNA sequence
Length = 314
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1376 gctggaattgacatgatcatggttccatt 1404
||||||||||||||||| |||||||||||
Sbjct: 3 gctggaattgacatgattatggttccatt 31
>gb|CA928193.1|CA928193 MTU6TR.P17.G08 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 423
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1454 gtcatccccatgagcagaatcga 1476
|||||||||||||||||||||||
Sbjct: 325 gtcatccccatgagcagaatcga 303
>gb|BI069214.1|BI069214 C033P76U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 352
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1064 aagcactatgtcggtgatggtggaac 1089
||||||||||| ||||||||||||||
Sbjct: 115 aagcactatgtgggtgatggtggaac 140
>gb|BU880261.1|BU880261 UM43TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 387 ggacgcgctggtggcggcgtg 367
>gb|CV245172.1|CV245172 WS0256.B21_K20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_K20 3', mRNA sequence
Length = 910
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 917 tggggacgctgctatgagagctacagtga 945
|||||| | ||||||||||||||||||||
Sbjct: 488 tggggaagatgctatgagagctacagtga 460
>gb|CX177195.1|CX177195 C03_69-75_05.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1280 tttaggggttttgtgatttccgactggga 1308
|||| ||||||||||||||| ||||||||
Sbjct: 332 tttaagggttttgtgatttctgactggga 360
>gb|CX178924.1|CX178924 C08_45-31_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 365 ggacgcgctggtggcggcgtg 345
>gb|CX180142.1|CX180142 C08_45-22_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 321 ggacgcgctggtggcggcgtg 301
>gb|CX180158.1|CX180158 G12_45-22_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 697
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 348 ggacgcgctggtggcggcgtg 328
>gb|CX180471.1|CX180471 F03_45-118_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 405 ggacgcgctggtggcggcgtg 385
>gb|CX185370.1|CX185370 B03_45-59_03.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 405 ggacgcgctggtggcggcgtg 385
>gb|CX185613.1|CX185613 C12_45-9_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 269 ggacgcgctggtggcggcgtg 249
>gb|DT474633.1|DT474633 WS0124.BR_I04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0124_I04
5', mRNA sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 297 ggacgcgctggtggcggcgtg 277
>gb|DT487670.1|DT487670 WS02534.B21_F09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02534_F09 3', mRNA sequence
Length = 879
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 917 tggggacgctgctatgagagctacagtga 945
|||||| | ||||||||||||||||||||
Sbjct: 488 tggggaagatgctatgagagctacagtga 460
>gb|DT487779.1|DT487779 WS02534.B21_K05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02534_K05 3', mRNA sequence
Length = 884
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 917 tggggacgctgctatgagagctacagtga 945
|||||| | ||||||||||||||||||||
Sbjct: 483 tggggaagatgctatgagagctacagtga 455
>gb|DT490344.1|DT490344 WS02544.B21_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_L07 3', mRNA sequence
Length = 939
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 917 tggggacgctgctatgagagctacagtga 945
|||||| | ||||||||||||||||||||
Sbjct: 488 tggggaagatgctatgagagctacagtga 460
>gb|DT501297.1|DT501297 WS01312.BR_D24 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides
cDNA clone WS01312_D24 5', mRNA sequence
Length = 519
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
|||||||||||||||||||||
Sbjct: 330 ggacgcgctggtggcggcgtg 310
>gb|AY515150.1| Populus deltoides CONSTANS-like protein CO1 mRNA, complete cds
Length = 1467
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2053 ggacgcgctggtggcggcgtg 2073
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Sbjct: 501 ggacgcgctggtggcggcgtg 481
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 207,137
Number of Sequences: 369679
Number of extensions: 207137
Number of successful extensions: 54329
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54276
Number of HSP's gapped (non-prelim): 53
length of query: 2611
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2591
effective length of database: 196,015,084
effective search space: 507875082644
effective search space used: 507875082644
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)