BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV273266.1|CV273266 WS01710.B21_E12 PTxD-NR-A-8 Populus ... 70 5e-011
gb|CV275252.1|CV275252 WS0175.B21_N18 PTxD-NR-A-8 Populus t... 70 5e-011
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 70 5e-011
gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Libra... 66 8e-010
gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Librar... 66 8e-010
gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA librar... 46 7e-004
gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA librar... 46 7e-004
gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-... 46 7e-004
gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-... 46 7e-004
gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-... 46 7e-004
gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium ... 46 7e-004
gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus t... 46 7e-004
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 46 7e-004
gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA librar... 38 0.17
gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Po... 38 0.17
gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA libra... 38 0.17
gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDN... 38 0.17
gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichoca... 38 0.17
gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus... 38 0.17
gb|DT516042.1|DT516042 WS02430.B21_D20 PTxD-ICC-N-A-14 Popu... 38 0.17
>gb|CV273266.1|CV273266 WS01710.B21_E12 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01710_E12 3', mRNA sequence
Length = 591
Score = 69.9 bits (35), Expect = 5e-011
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 76 tagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttct 135
|||||||||| || |||| ||||||||| ||||| || || ||||||||||| |||||||
Sbjct: 578 tagctggtgttgatacgaacttcactgttacatctaaaggaggagacgacgatgagttct 519
Query: 136 cagagct 142
|||||||
Sbjct: 518 cagagct 512
>gb|CV275252.1|CV275252 WS0175.B21_N18 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_N18 3', mRNA sequence
Length = 591
Score = 69.9 bits (35), Expect = 5e-011
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 76 tagctggtgtagacacgagcttcactgtgacatccaagggcggagacgacgaggagttct 135
|||||||||| || |||| ||||||||| ||||| || || ||||||||||| |||||||
Sbjct: 578 tagctggtgttgatacgaacttcactgttacatctaaaggaggagacgacgatgagttct 519
Query: 136 cagagct 142
|||||||
Sbjct: 518 cagagct 512
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 69.9 bits (35), Expect = 5e-011
Identities = 101/124 (81%)
Strand = Plus / Plus
Query: 37 cacatctctttgctgtgttccagggactactcaagnnnatagctggtgtagacacgagct 96
||||||| ||||| ||||||||||| || | ||| |||||||||| || |||| ||
Sbjct: 2886 cacatctatttgcagtgttccaggggcttttaaaggttctagctggtgttgatacgaact 2945
Query: 97 tcactgtgacatccaagggcggagacgacgaggagttctcagagctctacacattcaaat 156
||||||| || || || || ||||||||||| |||||||||||||| ||| |||| || |
Sbjct: 2946 tcactgttacgtctaaaggaggagacgacgacgagttctcagagctgtacgcatttaagt 3005
Query: 157 ggac 160
||||
Sbjct: 3006 ggac 3009
>gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 294
Score = 65.9 bits (33), Expect = 8e-010
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 37 cacatctctttgctgtgttccagggactactcaagnnnatagctggtgtagacacgagct 96
||||||| ||||| ||||||||||| || | ||| |||||||||| || |||| ||
Sbjct: 189 cacatctatttgcagtgttccaggggcttttaaaggttctagctggtgttgatacgaact 248
Query: 97 tcactgtgacatccaagggcggagacgacgaggagttctcagagct 142
||||||| || || || || ||||||||||| ||||||||||||||
Sbjct: 249 tcactgttacgtctaaaggaggagacgacgatgagttctcagagct 294
>gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 294
Score = 65.9 bits (33), Expect = 8e-010
Identities = 87/106 (82%)
Strand = Plus / Minus
Query: 37 cacatctctttgctgtgttccagggactactcaagnnnatagctggtgtagacacgagct 96
||||||| ||||| ||||||||||| || | ||| |||||||||| || |||| ||
Sbjct: 106 cacatctatttgcagtgttccaggggcttttaaaggttctagctggtgttgatacgaact 47
Query: 97 tcactgtgacatccaagggcggagacgacgaggagttctcagagct 142
||||||| || || || || ||||||||||| ||||||||||||||
Sbjct: 46 tcactgttacgtctaaaggaggagacgacgatgagttctcagagct 1
>gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 629
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 432 tcatggggacctctattcgggaagctcttctttgc 466
>gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 486
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 49 tcatggggacctctattcgggaagctcttctttgc 83
>gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021B12F1, mRNA sequence
Length = 655
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 406 tcatggggacctctattcgggaagctcttctttgc 440
>gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300030F05F1, mRNA sequence
Length = 385
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 137 tcatggggacctctattcgggaagctcttctttgc 171
>gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300033F04F1, mRNA sequence
Length = 589
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 261 tcatggggacctctattcgggaagctcttctttgc 295
>gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500004B05F1, mRNA sequence
Length = 634
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 257 tcatggggacctctattcgggaagctcttctttgc 291
>gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G15 3', mRNA sequence
Length = 445
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 385 tcatggggacctctattcgggaagctcttctttgc 351
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 46.1 bits (23), Expect = 7e-004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || ||||||||||||||||||||
Sbjct: 2895 tcatggggacctctattcgggaagctcttctttgc 2929
>gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 490
Score = 38.2 bits (19), Expect = 0.17
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || || |||||||||||||||||
Sbjct: 125 tcatggggacctctatttgggaagctcttctttgc 159
>gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 367
Score = 38.2 bits (19), Expect = 0.17
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || || |||||||||||||||||
Sbjct: 15 tcatggggacctctatttgggaagctcttctttgc 49
>gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 441
Score = 38.2 bits (19), Expect = 0.17
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || || |||||||||||||||||
Sbjct: 54 tcatggggacctctatttgggaagctcttctttgc 88
>gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P74 5', mRNA sequence
Length = 389
Score = 38.2 bits (19), Expect = 0.17
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || || |||||||||||||||||
Sbjct: 125 tcatggggacctctatttgggaagctcttctttgc 159
>gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_I15 5', mRNA sequence
Length = 777
Score = 38.2 bits (19), Expect = 0.17
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || || |||||||||||||||||
Sbjct: 418 tcatggggacctctatttgggaagctcttctttgc 452
>gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_B11 3', mRNA sequence
Length = 720
Score = 38.2 bits (19), Expect = 0.17
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 252 tcatggggccccctgttcgggaagctcttctttgc 286
|||||||| || || || |||||||||||||||||
Sbjct: 577 tcatggggacctctatttgggaagctcttctttgc 611
>gb|DT516042.1|DT516042 WS02430.B21_D20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_D20 3', mRNA sequence
Length = 667
Score = 38.2 bits (19), Expect = 0.17
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 258 ggccccctgttcgggaagctcttcttt 284
||||||||||| |||||| ||||||||
Sbjct: 452 ggccccctgttagggaagttcttcttt 426
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,885
Number of Sequences: 369679
Number of extensions: 21885
Number of successful extensions: 5937
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5903
Number of HSP's gapped (non-prelim): 31
length of query: 286
length of database: 203,408,664
effective HSP length: 18
effective length of query: 268
effective length of database: 196,754,442
effective search space: 52730190456
effective search space used: 52730190456
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)