BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH30c02.yg.2.1
         (722 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK318616.1|CK318616  X9P01c10 Populus stem seasonal libra...    38   0.45 
gb|CV259125.1|CV259125  WS02010.B21_H03 PTxN-IB-N-A-11 Popul...    38   0.45 
gb|CV263762.1|CV263762  WS02022.B21_L12 PTxN-IB-N-A-11 Popul...    38   0.45 
gb|DT490551.1|DT490551  WS02545.B21_E10 PT-MB-N-A-15 Populus...    38   0.45 
gb|AY372451.1|  Populus balsamifera subsp. trichocarpa x Pop...    38   0.45 

>gb|CK318616.1|CK318616 X9P01c10 Populus stem seasonal library Populus deltoides cDNA, mRNA
           sequence
          Length = 635

 Score = 38.2 bits (19), Expect = 0.45
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 296 aggatcgtcaatgtaggaa 314
           |||||||||||||||||||
Sbjct: 39  aggatcgtcaatgtaggaa 21



>gb|CV259125.1|CV259125 WS02010.B21_H03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02010_H03 3', mRNA sequence
          Length = 758

 Score = 38.2 bits (19), Expect = 0.45
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 249 gcttctgttgccattctag 267
           |||||||||||||||||||
Sbjct: 98  gcttctgttgccattctag 80



>gb|CV263762.1|CV263762 WS02022.B21_L12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02022_L12 3', mRNA sequence
          Length = 939

 Score = 38.2 bits (19), Expect = 0.45
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 296 aggatcgtcaatgtaggaa 314
           |||||||||||||||||||
Sbjct: 604 aggatcgtcaatgtaggaa 622



>gb|DT490551.1|DT490551 WS02545.B21_E10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02545_E10 3', mRNA sequence
          Length = 276

 Score = 38.2 bits (19), Expect = 0.45
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 460 aaaccacagaaacagcagc 478
           |||||||||||||||||||
Sbjct: 82  aaaccacagaaacagcagc 100



>gb|AY372451.1| Populus balsamifera subsp. trichocarpa x Populus deltoides
            phenylalanine ammonia lyase (PAL) mRNA, complete cds
          Length = 2136

 Score = 38.2 bits (19), Expect = 0.45
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 296  aggatcgtcaatgtaggaa 314
            |||||||||||||||||||
Sbjct: 1731 aggatcgtcaatgtaggaa 1713



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,847
Number of Sequences: 369679
Number of extensions: 74847
Number of successful extensions: 20623
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20618
Number of HSP's gapped (non-prelim): 5
length of query: 722
length of database: 203,408,664
effective HSP length: 19
effective length of query: 703
effective length of database: 196,384,763
effective search space: 138058488389
effective search space used: 138058488389
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)