BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ891040.1| Populus tremula x Populus alba mRNA for alp... 58 4e-007
gb|AJ779361.1|AJ779361 AJ779361 Populus euphratica root 3-6... 40 0.10
gb|AJ779399.1|AJ779399 AJ779399 Populus euphratica root 3-6... 40 0.10
>emb|AJ891040.1| Populus tremula x Populus alba mRNA for alpha 1,3 fucosyltransferase
(poFUT2 gene), clone INRA 717 1B4
Length = 1569
Score = 58.0 bits (29), Expect = 4e-007
Identities = 170/218 (77%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggat 380
|||||||| || ||||| || || |||||||| || | || || ||||||||||| |||
Sbjct: 1163 caaagacggcatgatgagtgtactgctgccatatctaccagtgccttgaaagaatcagat 1104
Query: 381 ggaccatcatacttccacctcaaagattgattgaaggcatcagggtttgaagcaatattt 440
|| || || || |||||||| || ||||||||| |||||||||| ||| ||| | |
Sbjct: 1103 gggccctcgtatttccaccttaatgattgattgtaggcatcaggattttctccaaggtat 1044
Query: 441 ttcattgtcttagcaactgaagcaacatcatcaagctnnttaatatgtaatattgcgcct 500
||||| ||||| |||| |||| ||||||| || |||| | |||||||| |||| |
Sbjct: 1043 ttcatagtcttcgcaattgaatcaacatcttctagcttcctgatatgtaaaattgagtta 984
Query: 501 tctcccggagnaaactcttgaatatttggagcaccaac 538
| | |||| ||| |||||||||||||||||||||||
Sbjct: 983 ggtgcaggagcaaaatcttgaatatttggagcaccaac 946
>gb|AJ779361.1|AJ779361 AJ779361 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800001H05F1, mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 432 gcaatatttttcattgtctt 451
||||||||||||||||||||
Sbjct: 548 gcaatatttttcattgtctt 529
>gb|AJ779399.1|AJ779399 AJ779399 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800002C08F1, mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 432 gcaatatttttcattgtctt 451
||||||||||||||||||||
Sbjct: 569 gcaatatttttcattgtctt 550
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,102
Number of Sequences: 369679
Number of extensions: 72102
Number of successful extensions: 19786
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19780
Number of HSP's gapped (non-prelim): 6
length of query: 637
length of database: 203,408,664
effective HSP length: 19
effective length of query: 618
effective length of database: 196,384,763
effective search space: 121365783534
effective search space used: 121365783534
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)