BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 96 2e-018
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 96 2e-018
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 96 2e-018
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 46 0.002
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.030
gb|BU886433.1|BU886433 R045D09 Populus root cDNA library Po... 40 0.12
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.12
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.12
gb|DN488267.1|DN488267 R045D09.3pR Populus root cDNA librar... 40 0.12
gb|DN497950.1|DN497950 R045D09.5pR Populus root cDNA librar... 40 0.12
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.47
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.47
gb|AJ780411.1|AJ780411 AJ780411 Populus euphratica leaf 3-6... 38 0.47
gb|AJ769887.1|AJ769887 AJ769887 Populus euphratica leaf 3-6... 38 0.47
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.47
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 95.6 bits (48), Expect = 2e-018
Identities = 203/254 (79%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 216 aaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgtaaatatg 275
||||| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 396 aaactggtttcctgatttgacataaaccatgcaagagatgaaacacttccagtaaatata 337
Query: 276 tgttctctgactccaagcatcgatggatatctcactccat---gtttcttctcaaactct 332
|| ||||| | ||||| ||||| |||| ||||| |||| | || || ||| |||
Sbjct: 336 tgctctctaagcccaagtatcgaaggattcctcacaccatcaggctttttaagaaattct 277
Query: 333 tgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcatatctata 392
||||||| ||| ||||||||||| || || ||||| |||| ||||| |||||||||||
Sbjct: 276 tgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttcatatctatt 217
Query: 393 gtttggaggcattcgcctctggtgaatattattgcatggttctgattttctggctttcct 452
| ||| | || ||| || | ||||| || || |||||||| || |||||||| ||||||
Sbjct: 216 gcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctggttttcct 157
Query: 453 tcacctaaaatggc 466
||||| || |||||
Sbjct: 156 tcacccaagatggc 143
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
|||||||| |||||||| | ||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 582 gtaacattcccttcacgtagtgtagaattgaagccggcaaatatatcttcactcagattg 523
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
|||| || || |||||||| ||||| || || || | ||| ||||| | ||| || | |
Sbjct: 522 ataaccttagaagctttactgacaccccctctagtcaagtgaaaaagcctatcaaataca 463
Query: 150 tcaggatgaccata 163
|| |||||||||||
Sbjct: 462 tccggatgaccata 449
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 95.6 bits (48), Expect = 2e-018
Identities = 203/254 (79%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 216 aaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgtaaatatg 275
||||| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 396 aaactggtttcctgatttgacataaaccatgcaagagatgaaacacttccagtaaatata 337
Query: 276 tgttctctgactccaagcatcgatggatatctcactccat---gtttcttctcaaactct 332
|| ||||| | ||||| ||||| |||| ||||| |||| | || || ||| |||
Sbjct: 336 tgctctctaagcccaagtatcgaaggattcctcacaccatcaggctttttaagaaattct 277
Query: 333 tgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcatatctata 392
||||||| ||| ||||||||||| || || ||||| |||| ||||| |||||||||||
Sbjct: 276 tgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttcatatctatt 217
Query: 393 gtttggaggcattcgcctctggtgaatattattgcatggttctgattttctggctttcct 452
| ||| | || ||| || | ||||| || || |||||||| || |||||||| ||||||
Sbjct: 216 gcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctggttttcct 157
Query: 453 tcacctaaaatggc 466
||||| || |||||
Sbjct: 156 tcacccaagatggc 143
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
|||||||| |||||||| | ||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 582 gtaacattcccttcacgtagtgtagaattgaagccggcaaatatatcttcactcagattg 523
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
|||| || || |||||||| ||||| || || || | ||| ||||| | ||| || | |
Sbjct: 522 ataaccttagaagctttactgacaccccctctagtcaagtgaaaaagcctatcaaataca 463
Query: 150 tcaggatgaccata 163
|| |||||||||||
Sbjct: 462 tccggatgaccata 449
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 95.6 bits (48), Expect = 2e-018
Identities = 203/254 (79%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 216 aaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgtaaatatg 275
||||| ||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 399 aaactggtttcctgatttgacataaaccatgcaagagatgaaacacttccagtaaatata 340
Query: 276 tgttctctgactccaagcatcgatggatatctcactccat---gtttcttctcaaactct 332
|| ||||| | ||||| ||||| |||| ||||| |||| | || || ||| |||
Sbjct: 339 tgctctctaagcccaagtatcgaaggattcctcacaccatcaggctttttaagaaattct 280
Query: 333 tgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcatatctata 392
||||||| ||| ||||||||||| || || ||||| |||| ||||| |||||||||||
Sbjct: 279 tgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttcatatctatt 220
Query: 393 gtttggaggcattcgcctctggtgaatattattgcatggttctgattttctggctttcct 452
| ||| | || ||| || | ||||| || || |||||||| || |||||||| ||||||
Sbjct: 219 gcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctggttttcct 160
Query: 453 tcacctaaaatggc 466
||||| || |||||
Sbjct: 159 tcacccaagatggc 146
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
|||||||| |||||||| | ||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 585 gtaacattcccttcacgtagtgtagaattgaagccggcaaatatatcttcactcagattg 526
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
|||| || || |||||||| ||||| || || || | ||| ||||| | ||| || | |
Sbjct: 525 ataaccttagaagctttactgacaccccctctagtcaagtgaaaaagcctatcaaataca 466
Query: 150 tcaggatgaccata 163
|| |||||||||||
Sbjct: 465 tccggatgaccata 452
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 330 tcttgcagcagatttctcattttcaaagcctcctc 364
|||| ||||||||||||||| ||||| ||||||||
Sbjct: 24946 tcttccagcagatttctcatcttcaaggcctcctc 24912
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 210 gttacgaaactagtttcctgatttgacat 238
||||| || ||||||||||||||||||||
Sbjct: 25150 gttacaaagctagtttcctgatttgacat 25122
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.030
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtact 657
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtac 625
>gb|BU886433.1|BU886433 R045D09 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 535
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 323 ctcaaactcttgcagcagat 342
||||||||||||||||||||
Sbjct: 253 ctcaaactcttgcagcagat 234
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtac 479
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtac 289
>gb|DN488267.1|DN488267 R045D09.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R045D09 3', mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 323 ctcaaactcttgcagcagat 342
||||||||||||||||||||
Sbjct: 284 ctcaaactcttgcagcagat 303
>gb|DN497950.1|DN497950 R045D09.5pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R045D09 5', mRNA sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 323 ctcaaactcttgcagcagat 342
||||||||||||||||||||
Sbjct: 331 ctcaaactcttgcagcagat 312
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|AJ780411.1|AJ780411 AJ780411 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900007E12F1, mRNA sequence
Length = 152
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 6 cgcccgggcaggtactcgt 24
|||||||||||||||||||
Sbjct: 152 cgcccgggcaggtactcgt 134
>gb|AJ769887.1|AJ769887 AJ769887 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100004A10F1, mRNA sequence
Length = 423
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtactcg 23
|||||||||||||||||||
Sbjct: 407 ccgcccgggcaggtactcg 389
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
TIR1 (TIR1) mRNA, complete cds
Length = 2646
Score = 38.2 bits (19), Expect = 0.47
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,638
Number of Sequences: 369679
Number of extensions: 81638
Number of successful extensions: 22086
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22048
Number of HSP's gapped (non-prelim): 35
length of query: 755
length of database: 203,408,664
effective HSP length: 19
effective length of query: 736
effective length of database: 196,384,763
effective search space: 144539185568
effective search space used: 144539185568
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)