BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.006B01F020311.3.1
         (609 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ774822.1|AJ774822  AJ774822 Populus euphratica shoot 3-...    46   0.002
gb|DN501581.1|DN501581  V006H08.5pR Populus male catkins cDN...    46   0.002
gb|DT474803.1|DT474803  WS0125.BR_A19 PT-GT-FL-A-3 Populus t...    46   0.002
gb|AC149484.1|  Populus trichocarpa clone Pop1-69M19, comple...    46   0.002

>gb|AJ774822.1|AJ774822 AJ774822 Populus euphratica shoot 3-6 months Populus euphratica
           cDNA clone P0000300024F09F1, mRNA sequence
          Length = 538

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 229 ggagctggtgggatatgggcaga 251
           |||||||||||||||||||||||
Sbjct: 389 ggagctggtgggatatgggcaga 411



>gb|DN501581.1|DN501581 V006H08.5pR Populus male catkins cDNA library Populus trichocarpa
           cDNA clone V006H08 5', mRNA sequence
          Length = 508

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 229 ggagctggtgggatatgggcaga 251
           |||||||||||||||||||||||
Sbjct: 326 ggagctggtgggatatgggcaga 348



>gb|DT474803.1|DT474803 WS0125.BR_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
           WS0125_A19 5', mRNA sequence
          Length = 585

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 229 ggagctggtgggatatgggcaga 251
           |||||||||||||||||||||||
Sbjct: 327 ggagctggtgggatatgggcaga 349



>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
          Length = 96930

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 229   ggagctggtgggatatgggcaga 251
             |||||||||||||||||||||||
Sbjct: 72718 ggagctggtgggatatgggcaga 72696



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,479
Number of Sequences: 369679
Number of extensions: 59479
Number of successful extensions: 17246
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17236
Number of HSP's gapped (non-prelim): 10
length of query: 609
length of database: 203,408,664
effective HSP length: 19
effective length of query: 590
effective length of database: 196,384,763
effective search space: 115867010170
effective search space used: 115867010170
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)