BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS7b05.xg.2.1
(526 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA libra... 133 7e-030
gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA libra... 131 3e-029
gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA librar... 125 2e-027
gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA librar... 125 2e-027
gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDN... 125 2e-027
gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus tr... 125 2e-027
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 125 2e-027
gb|CA934196.1|CA934196 MTU3TS.P4.D08 Aspen stem cDNA Librar... 117 4e-025
gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium ... 117 4e-025
gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Po... 111 3e-023
gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA librar... 111 3e-023
gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichoca... 109 1e-022
gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-... 101 3e-020
gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-... 101 3e-020
gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus t... 101 3e-020
gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDN... 98 4e-019
gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-... 96 2e-018
gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA librar... 94 6e-018
gb|CV283069.1|CV283069 WS0186.B21_F15 PTxD-IL-N-A-9 Populus... 90 1e-016
gb|DT470299.1|DT470299 WS01920.C21_H07 PT-DX-N-A-10 Populus... 90 1e-016
gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus... 90 1e-016
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 90 1e-016
gb|CK087778.1|CK087778 A020P56.3pR Hybrid aspen plasmid lib... 72 2e-011
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 72 2e-011
gb|CV234217.1|CV234217 WS01214.B21_B13 PT-GT-FL-A-3 Populus... 70 9e-011
gb|CV235270.1|CV235270 WS01218.B21_H07 PT-GT-FL-A-3 Populus... 70 9e-011
gb|CV238245.1|CV238245 WS0125.B21_N16 PT-GT-FL-A-3 Populus ... 70 9e-011
gb|CV238311.1|CV238311 WS0126.B21_C03 PT-GT-FL-A-3 Populus ... 70 9e-011
gb|DT475055.1|DT475055 WS0125.BR_N16 PT-GT-FL-A-3 Populus t... 70 9e-011
gb|DT507297.1|DT507297 WS02417.BR_O04 PTxD-ICC-N-A-14 Popul... 70 9e-011
gb|CV227790.1|CV227790 WS0168.B21_D13 PT-DX-A-7 Populus tri... 68 4e-010
gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus... 66 1e-009
gb|CV242542.1|CV242542 WS02515.B21_F16 PT-MB-N-A-15 Populus... 60 9e-008
gb|CK088138.1|CK088138 A040P09.3pR Hybrid aspen plasmid lib... 58 3e-007
gb|CV229552.1|CV229552 WS01913.B21_K14 PT-DX-N-A-10 Populus... 58 3e-007
gb|CV268371.1|CV268371 WS0205.B21_E18 PTxN-IB-N-A-11 Populu... 58 3e-007
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 58 3e-007
gb|BU897334.1|BU897334 X055D05 Populus wood cDNA library Po... 56 1e-006
gb|CF227502.1|CF227502 PtaD6G2G0214 Poplar cDNA library fro... 56 1e-006
gb|CK091716.1|CK091716 F120P33.3pR Populus flower cDNA libr... 56 1e-006
gb|CK101805.1|CK101805 F120P33.5pR Populus flower cDNA libr... 56 1e-006
gb|CN519879.1|CN519879 GQ0108.B3_I06 GQ010 Populus trichoca... 56 1e-006
gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichoca... 56 1e-006
gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus... 56 1e-006
gb|CF237143.1|CF237143 Ptajxtjxt2F11F1111 Poplar cDNA libra... 54 5e-006
gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA librar... 52 2e-005
gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA librar... 52 2e-005
gb|BI138973.1|BI138973 F120P33Y Populus flower cDNA library... 52 2e-005
gb|CF228296.1|CF228296 PtaXM0011D10D1008 Poplar cDNA librar... 52 2e-005
gb|BP931353.1|BP931353 BP931353 full-length enriched poplar... 52 2e-005
gb|BP935110.1|BP935110 BP935110 full-length enriched poplar... 52 2e-005
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 52 2e-005
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 52 2e-005
gb|CK092703.1|CK092703 G092P25.3pR Populus tension wood cDN... 50 9e-005
gb|CK102806.1|CK102806 G092P25.5pR Populus tension wood cDN... 50 9e-005
gb|CV273968.1|CV273968 WS01712.B21_M13 PTxD-NR-A-8 Populus ... 50 9e-005
gb|BU817734.1|BU817734 UA20CPD09 Populus tremula cambium cD... 48 3e-004
gb|AI164546.1|AI164546 A064p24u Hybrid aspen plasmid librar... 44 0.005
gb|BI128229.1|BI128229 G072P90Y Populus cambium cDNA librar... 44 0.005
gb|BU894361.1|BU894361 X008A10 Populus wood cDNA library Po... 44 0.005
gb|BU894855.1|BU894855 X016A07 Populus wood cDNA library Po... 44 0.005
gb|BU894931.1|BU894931 X017A07 Populus wood cDNA library Po... 44 0.005
gb|CF232524.1|CF232524 PtaJXO0011E3E0309 Poplar cDNA librar... 44 0.005
gb|CF233341.1|CF233341 PtaJXO0022B5B0503 Poplar cDNA librar... 44 0.005
gb|CF235304.1|CF235304 PtaJXT0021C1C0105 Poplar cDNA librar... 44 0.005
gb|CK088642.1|CK088642 A064P24.3pR Hybrid aspen plasmid lib... 44 0.005
gb|CK093129.1|CK093129 G109P08.3pR Populus tension wood cDN... 44 0.005
gb|CK097446.1|CK097446 UB51DPD11.3pR Populus active cambium... 44 0.005
gb|CN524029.1|CN524029 GQ015M07.T3_H06 GQ015 Populus tricho... 44 0.005
gb|CN524680.1|CN524680 GQ015M13.T3_D10 GQ015 Populus tricho... 44 0.005
gb|CK318639.1|CK318639 X9P01f01 Populus stem seasonal libra... 44 0.005
gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal libr... 44 0.005
gb|CV225435.1|CV225435 WS0161.B21_G07 PT-DX-A-7 Populus tri... 44 0.005
gb|CV225888.1|CV225888 WS0162.B21_K19 PT-DX-A-7 Populus tri... 44 0.005
gb|CV226017.1|CV226017 WS0163.B21_A20 PT-DX-A-7 Populus tri... 44 0.005
gb|CV226195.1|CV226195 WS0163.B21_J02 PT-DX-A-7 Populus tri... 44 0.005
gb|CV227633.1|CV227633 WS0167.B21_M03 PT-DX-A-7 Populus tri... 44 0.005
gb|CV231786.1|CV231786 WS0195.B21_J01 PT-DX-N-A-10 Populus ... 44 0.005
gb|CV232087.1|CV232087 WS0196.B21_I06 PT-DX-N-A-10 Populus ... 44 0.005
gb|CV262834.1|CV262834 WS0202.B21_K05 PTxN-IB-N-A-11 Populu... 44 0.005
gb|CV268970.1|CV268970 WS0206.B21_P09 PTxN-IB-N-A-11 Populu... 44 0.005
gb|CV272431.1|CV272431 WS0157.B21_K08 PTxN-IB-A-6 Populus t... 44 0.005
gb|CV282433.1|CV282433 WS0184.B21_J19 PTxD-IL-N-A-9 Populus... 44 0.005
gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus... 44 0.005
gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus tr... 44 0.005
gb|AF081534.1|AF081534 Populus x canescens cellulose syntha... 44 0.005
gb|AF527387.1| Populus tremuloides xylem-specific cellulose... 44 0.005
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 44 0.005
gb|AY573571.1| Populus tremula x Populus tremuloides cellul... 44 0.005
gb|CV231125.1|CV231125 WS0193.B21_J22 PT-DX-N-A-10 Populus ... 42 0.021
gb|BU815407.1|BU815407 N041C05 Populus bark cDNA library Po... 40 0.082
gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal libr... 40 0.082
gb|CV225999.1|CV225999 WS0162.B21_P23 PT-DX-A-7 Populus tri... 40 0.082
gb|CX175098.1|CX175098 F03_69-34_11.ab1 leaf inoculated wit... 40 0.082
gb|DN485869.1|DN485869 N041C05.3pR Populus bark cDNA librar... 40 0.082
gb|DN495393.1|DN495393 N041C05.5pR Populus bark cDNA librar... 40 0.082
gb|DT469228.1|DT469228 WS01917.C21_C12 PT-DX-N-A-10 Populus... 40 0.082
gb|CK102126.1|CK102126 G065P23.5pR Populus tension wood cDN... 38 0.32
gb|CV252662.1|CV252662 PX0015.B21_I21 PT-X-FL-A-1 Populus t... 38 0.32
gb|CX177492.1|CX177492 F08_45-119_12.ab1 leaf inoculated wi... 38 0.32
>gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 441
Score = 133 bits (67), Expect = 7e-030
Identities = 160/191 (83%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| ||||||
Sbjct: 223 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgacg 164
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||||| |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 163 acaatagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 104
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| || || || || ||||| ||||| ||||||
Sbjct: 103 acaatcacccagaaggcaaagaagagcttcccaaatagaggtccccatgactgatacccg 44
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 43 ttgtttatggc 33
>gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 131 bits (66), Expect = 3e-029
Identities = 126/146 (86%)
Strand = Plus / Minus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||||||||| |||||||||||||| ||||| | || |||||||| |||||||| |||
Sbjct: 480 acaatggtgggtgtccggttctggcgacccatcaaacctttgaggaaagggtagagatgg 421
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| || ||
Sbjct: 420 acgatcacccagaaggcaaagaaaagcttgccaaagagtgggccccacgactgataacca 361
Query: 473 ttgttgatggcgtcggagatgccggc 498
|||||||||||| ||| || |||||
Sbjct: 360 ctgttgatggcgtgggatatcccggc 335
>gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 490
Score = 125 bits (63), Expect = 2e-027
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| |||||
Sbjct: 294 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgaca 235
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||||| |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 234 acaatagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 175
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| || || || || ||||| ||||| ||||||
Sbjct: 174 acaatcacccagaaggcaaagaagagcttcccaaatagaggtccccatgactgatacccg 115
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 114 ttgtttatggc 104
>gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 486
Score = 125 bits (63), Expect = 2e-027
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
||||| |||| |||||| |||| |||||||||||| ||||| ||||| ||||| || ||
Sbjct: 218 ggatcaatccggacccaaagcaaggagaagatggaagccaggagcactgaccatataacc 159
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| || || |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 158 acaatagtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 99
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||
Sbjct: 98 acaatcacccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtaccca 39
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 38 ttgtttatggc 28
>gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P74 5', mRNA sequence
Length = 389
Score = 125 bits (63), Expect = 2e-027
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| |||||
Sbjct: 294 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgaca 235
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||||| |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 234 acaatagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 175
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| || || || || ||||| ||||| ||||||
Sbjct: 174 acaatcacccagaaggcaaagaagagcttcccaaatagaggtccccatgactgatacccg 115
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 114 ttgtttatggc 104
>gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_M17
5', mRNA sequence
Length = 514
Score = 125 bits (63), Expect = 2e-027
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||||||||| |||||||||||||| ||||| | || |||||||| |||||||| |||
Sbjct: 132 acaatggtgggtgtccggttctggcgacccatcaaacctttgaggaaagggtagagatgg 73
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
||||| ||||||||||| ||||| |||||||| ||||| || |||||||||||||| ||
Sbjct: 72 acgatcacccagaaggcaaagaaaagcttgccaaagagtggaccccacgactggtaacca 13
Query: 473 ttgttgatggc 483
||||||||||
Sbjct: 12 ctgttgatggc 2
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 125 bits (63), Expect = 2e-027
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
||||| |||| |||||| |||| |||||||||||| ||||| ||||| ||||| || ||
Sbjct: 3064 ggatcaatccggacccaaagcaaggagaagatggaagccaggagcactgaccatataacc 3005
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| || || |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 3004 acaatagtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 2945
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||
Sbjct: 2944 acaatcacccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtaccca 2885
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 2884 ttgtttatggc 2874
>gb|CA934196.1|CA934196 MTU3TS.P4.D08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 482
Score = 117 bits (59), Expect = 4e-025
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||||||||| |||||||||||||| ||||| | || |||||||| |||||||| |||
Sbjct: 192 acaatggtgggtgtccggttctggcgacccatcaaacctttgaggaaagggtagagatgg 251
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
||||| ||||||||||| ||||| |||||||| || || |||||||||||||| || ||
Sbjct: 252 acgatcacccagaaggcaaagaaaagcttgccaaaaagtgggccccacgactgataacca 311
Query: 473 ttgttgatggc 483
||||||||||
Sbjct: 312 ctgttgatggc 322
>gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500004B05F1, mRNA sequence
Length = 634
Score = 117 bits (59), Expect = 4e-025
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| || ||
Sbjct: 426 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatataaca 367
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||||| |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 366 acaatagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 307
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| ||||| || || ||||| ||||| |||||
Sbjct: 306 acaatcacccagaaggcaaagaagagcttcccgaatagaggtccccatgactgataccca 247
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 246 ttgtttatggc 236
>gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 367
Score = 111 bits (56), Expect = 3e-023
Identities = 152/184 (82%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| |||||
Sbjct: 184 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgaca 125
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||||| |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 124 acaatagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 65
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| || || || || ||||| ||||| |||||
Sbjct: 64 acaatcacccagaaggcaaagaagagcttcccaaatagaggtccccatgactgataccca 5
Query: 473 ttgt 476
||||
Sbjct: 4 ttgt 1
>gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 629
Score = 111 bits (56), Expect = 3e-023
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 305 acccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgggc 364
||||| |||| |||||||||||| ||||| ||| | ||||| || || ||||| || ||
Sbjct: 589 acccaaagcaaggagaagatggaagccaggagcnctgaccatataaccacaatagtcggt 530
Query: 365 gtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccag 424
|||| ||| || | |||||| || || |||||||| |||||||| ||||| || ||||||
Sbjct: 529 gtcctgttttgcctccccattagacctttgaggaatgggtagagatggacaatcacccag 470
Query: 425 aaggcgaagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggc 483
||||| ||||||||||| ||||| || || ||||| ||||||||||| ||||| |||||
Sbjct: 469 aaggcaaagaagagcttcccgaatagaggtccccatgactggtacccattgtttatggc 411
>gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_I15 5', mRNA sequence
Length = 777
Score = 109 bits (55), Expect = 1e-022
Identities = 157/191 (82%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| || ||
Sbjct: 587 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatataaca 528
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||||| |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 527 acaatagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 468
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| || || || || ||||| ||||| |||||
Sbjct: 467 acaatcacccagaaggcaaagaagagcttcccaaatagaggtccccatgactgataccca 408
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 407 ttgtttatggc 397
>gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021B12F1, mRNA sequence
Length = 655
Score = 101 bits (51), Expect = 3e-020
Identities = 156/191 (81%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
||||| |||| |||||| |||| |||||| ||||| |||| ||||| ||||| || ||
Sbjct: 575 ggatcaatccggacccaaagcaaggagaaaatggaagccaagagcactgaccatataacc 516
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
|| || || || |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 515 actatagtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 456
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||
Sbjct: 455 acaatcacccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtaccca 396
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 395 ttgtttatggc 385
>gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300030F05F1, mRNA sequence
Length = 385
Score = 101 bits (51), Expect = 3e-020
Identities = 156/191 (81%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
||||| |||| |||||| |||| |||||| ||||| |||| ||||| ||||| || ||
Sbjct: 306 ggatcaatccggacccaaagcaaggagaaaatggaagccaagagcactgaccatataacc 247
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
|| || || || |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 246 actatagtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 187
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||
Sbjct: 186 acaatcacccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtaccca 127
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 126 ttgtttatggc 116
>gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G15 3', mRNA sequence
Length = 445
Score = 101 bits (51), Expect = 3e-020
Identities = 156/191 (81%)
Strand = Plus / Plus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
||||| |||| |||||| |||| |||||| ||||| |||| ||||| ||||| || ||
Sbjct: 216 ggatcaatccggacccaaagcaaggagaaaatggaagccaagagcactgaccatataacc 275
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| || || |||| ||| || | |||||| | || |||||||||||||| || |||
Sbjct: 276 acaatagtcggtgtcctgttttgcctccccatcaaacctttgaggaacgggtaaagatgg 335
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||
Sbjct: 336 acaatcacccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtaccca 395
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 396 ttgtttatggc 406
>gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P58 5', mRNA sequence
Length = 364
Score = 97.6 bits (49), Expect = 4e-019
Identities = 151/185 (81%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| |||||
Sbjct: 217 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgaca 158
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||| | |||| ||| || | |||||| || || |||||||| |||||| | |||
Sbjct: 157 acaatagtgcgtgtcctgttttgcctccccattagacctttgaggaatgggtagtgatgg 98
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| || | || || ||||| ||||| ||||||
Sbjct: 97 acaatcacccagaaggcaaagaagagcttaccatatagaggtccccatgactgatacccg 38
Query: 473 ttgtt 477
|||||
Sbjct: 37 ttgtt 33
>gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300033F04F1, mRNA sequence
Length = 589
Score = 95.6 bits (48), Expect = 2e-018
Identities = 155/191 (81%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
||||| |||| |||||| |||| |||||| ||||| |||| ||||| | ||| || ||
Sbjct: 430 ggatcaatccggacccaaagcaaggagaaaatggaagccaagagcactgnccatataacc 371
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
|| || || || |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 370 actatagtcggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 311
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggtacccg 472
|| || ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||
Sbjct: 310 acaatcacccagaaggcaaagaagagcttcccgaatagaggtccccatgactggtaccca 251
Query: 473 ttgttgatggc 483
||||| |||||
Sbjct: 250 ttgtttatggc 240
>gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 340
Score = 93.7 bits (47), Expect = 6e-018
Identities = 119/143 (83%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| |||||
Sbjct: 143 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgaca 84
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| ||||| |||| ||| || | |||||| || || |||||||| |||||||| |||
Sbjct: 83 acaatagtgggtgtcctgttttgcctccccattagacctttgaggaatgggtagagatgg 24
Query: 413 acgatgacccagaaggcgaagaa 435
|| || ||||||||||| |||||
Sbjct: 23 acaatcacccagaaggcaaagaa 1
>gb|CV283069.1|CV283069 WS0186.B21_F15 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0186_F15 3', mRNA sequence
Length = 450
Score = 89.7 bits (45), Expect = 1e-016
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||||||||| |||||||||||||| ||||| | || |||||||| || ||||| |||
Sbjct: 176 acaatggtgggtgtccggttctggcgacccatcaaacctttgaggaaaggatagagatgg 235
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
| ||| |||||||| |||||||| |||||||| ||||| || ||||| |||||
Sbjct: 236 atgatcacccagaaagcgaagaaaagcttgccaaagagtggaccccatgactg 288
>gb|DT470299.1|DT470299 WS01920.C21_H07 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_H07 3', mRNA sequence
Length = 439
Score = 89.7 bits (45), Expect = 1e-016
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||||||||| |||||||||||||| ||||| | || |||||||| || ||||| |||
Sbjct: 176 acaatggtgggtgtccggttctggcgacccatcaaacctttgaggaaaggatagagatgg 235
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
| ||| |||||||| |||||||| |||||||| ||||| || ||||| |||||
Sbjct: 236 atgatcacccagaaagcgaagaaaagcttgccaaagagtggaccccatgactg 288
>gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_B11 3', mRNA sequence
Length = 720
Score = 89.7 bits (45), Expect = 1e-016
Identities = 135/165 (81%)
Strand = Plus / Minus
Query: 319 gaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctggcg 378
||||||||| |||| ||||| ||||| || || ||||| ||||| |||| ||| || |
Sbjct: 720 gaagatggaagccaagagcactgaccatataacaacaatagtgggtgtcctgttttgcct 661
Query: 379 ccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagag 438
|||||| || || |||||||| |||||||| ||||| || ||||||||||| ||||||||
Sbjct: 660 ccccattagacctttgaggaatgggtagagatggacaatcacccagaaggcaaagaagag 601
Query: 439 cttgccgaagagcgggccccacgactggtacccgttgttgatggc 483
||| || || || || ||||| ||||| ||||| ||||| |||||
Sbjct: 600 cttcccaaatagaggtccccatgactgatacccattgtttatggc 556
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds
Length = 3532
Score = 89.7 bits (45), Expect = 1e-016
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||||||||| |||||||||||||| ||||| | || || ||||| || ||||| |||
Sbjct: 3357 acaatggtgggtgtccggttctggcgacccatcaaaccttttaggaaaggatagagatgg 3298
Query: 413 acgatgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactg 465
||||| |||||||| |||||||| |||||||| ||||| || ||||| |||||
Sbjct: 3297 acgatcacccagaaagcgaagaaaagcttgccaaagagtggaccccatgactg 3245
>gb|CK087778.1|CK087778 A020P56.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A020P56 3', mRNA sequence
Length = 826
Score = 71.9 bits (36), Expect = 2e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 388 ccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaa 447
|||||||||||||||||| |||||||| || ||||| || || ||||| ||||| |||||
Sbjct: 418 ccccttgaggaacgggtaaaggtggacaattacccacaacgcaaagaatagcttaccgaa 477
Query: 448 gagcgggcccca 459
|||||| |||||
Sbjct: 478 gagcggacccca 489
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 71.9 bits (36), Expect = 2e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 388 ccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaa 447
|||||||||||||||||| |||||||| || ||||| || || ||||| ||||| |||||
Sbjct: 3589 ccccttgaggaacgggtaaaggtggacaattacccacaacgcaaagaatagcttaccgaa 3530
Query: 448 gagcgggcccca 459
|||||| |||||
Sbjct: 3529 gagcggacccca 3518
>gb|CV234217.1|CV234217 WS01214.B21_B13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_B13 3', mRNA sequence
Length = 654
Score = 69.9 bits (35), Expect = 9e-011
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 386 agccccttgaggaacgggtagaggtggacgatgacccagaaggcgaa 432
|||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 510 agccccttgaggaatgggtagaggtggatgatgacccacaaggcgaa 556
>gb|CV235270.1|CV235270 WS01218.B21_H07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_H07 3', mRNA sequence
Length = 695
Score = 69.9 bits (35), Expect = 9e-011
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 386 agccccttgaggaacgggtagaggtggacgatgacccagaaggcgaa 432
|||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 475 agccccttgaggaatgggtagaggtggatgatgacccacaaggcgaa 521
>gb|CV238245.1|CV238245 WS0125.B21_N16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_N16 3', mRNA sequence
Length = 687
Score = 69.9 bits (35), Expect = 9e-011
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 386 agccccttgaggaacgggtagaggtggacgatgacccagaaggcgaa 432
|||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 475 agccccttgaggaatgggtagaggtggatgatgacccacaaggcgaa 521
>gb|CV238311.1|CV238311 WS0126.B21_C03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_C03 3', mRNA sequence
Length = 619
Score = 69.9 bits (35), Expect = 9e-011
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 386 agccccttgaggaacgggtagaggtggacgatgacccagaaggcgaa 432
|||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 475 agccccttgaggaatgggtagaggtggatgatgacccacaaggcgaa 521
>gb|DT475055.1|DT475055 WS0125.BR_N16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_N16 5', mRNA sequence
Length = 595
Score = 69.9 bits (35), Expect = 9e-011
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 386 agccccttgaggaacgggtagaggtggacgatgacccagaaggcgaa 432
|||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 595 agccccttgaggaatgggtagaggtggatgatgacccacaaggcgaa 549
>gb|DT507297.1|DT507297 WS02417.BR_O04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_O04 5', mRNA sequence
Length = 571
Score = 69.9 bits (35), Expect = 9e-011
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 386 agccccttgaggaacgggtagaggtggacgatgacccagaaggcgaa 432
|||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 114 agccccttgaggaatgggtagaggtggatgatgacccacaaggcgaa 68
>gb|CV227790.1|CV227790 WS0168.B21_D13 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_D13
3', mRNA sequence
Length = 817
Score = 67.9 bits (34), Expect = 4e-010
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 431 aagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| ||||||||||||||||| ||||| |||||||||||| |||| ||||||
Sbjct: 632 aagaacagcttgccgaagagcggaccccatgactggtacccgctgtttatggcg 685
>gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_E06 3', mRNA sequence
Length = 361
Score = 65.9 bits (33), Expect = 1e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
||||| |||| |||||| |||| |||||||||||| |||| ||||| ||||| || ||
Sbjct: 139 ggatcaatccggacccaaagcaaggagaagatggaagccaagagcactgaccatataacc 80
Query: 353 acaatggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtgg 412
||||| || || |||| ||| || | |||||| || || |||||||||| | |||| |||
Sbjct: 79 acaatagtcggtgtcctgttttgcctccccatcagacctttgaggaacgaggagagatgg 20
Query: 413 acgatgacccagaaggc 429
|| || |||||||||||
Sbjct: 19 acaatcacccagaaggc 3
>gb|CV242542.1|CV242542 WS02515.B21_F16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_F16 3', mRNA sequence
Length = 861
Score = 60.0 bits (30), Expect = 9e-008
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 431 aagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggcg 484
||||| |||||||| |||||||| ||||| |||||||||||| |||| ||||||
Sbjct: 633 aagaacagcttgccaaagagcggaccccatgactggtacccgctgtttatggcg 686
>gb|CK088138.1|CK088138 A040P09.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A040P09 3', mRNA sequence
Length = 730
Score = 58.0 bits (29), Expect = 3e-007
Identities = 125/157 (79%)
Strand = Plus / Plus
Query: 303 tgacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgg 362
||||||||| || ||||||| ||||||| |||||| ||||| | || |||||||| |
Sbjct: 347 tgacccagacaagagagaagacagaggccaacagcactgaccacagcacaacaatggttg 406
Query: 363 gcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccc 422
| || ||||| ||||| ||||| || || || ||||| || ||||| || | || ||||
Sbjct: 407 gtgttcggttttggcgacccatcagacctttaaggaatggatagagatgaagaatcaccc 466
Query: 423 agaaggcgaagaagagcttgccgaagagcgggcccca 459
||||||| ||||||| |||||| ||||| || |||||
Sbjct: 467 agaaggcaaagaagaccttgccaaagagaggtcccca 503
>gb|CV229552.1|CV229552 WS01913.B21_K14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_K14 3', mRNA sequence
Length = 799
Score = 58.0 bits (29), Expect = 3e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 431 aagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggc 483
||||| |||||||| |||||||| ||||| |||||||||||| |||| |||||
Sbjct: 633 aagaacagcttgccaaagagcggaccccatgactggtacccgctgtttatggc 685
>gb|CV268371.1|CV268371 WS0205.B21_E18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_E18 3', mRNA sequence
Length = 702
Score = 58.0 bits (29), Expect = 3e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 431 aagaagagcttgccgaagagcgggccccacgactggtacccgttgttgatggc 483
||||| |||||||| |||||||| ||||| |||||||||||| |||| |||||
Sbjct: 628 aagaacagcttgccaaagagcggaccccatgactggtacccgctgtttatggc 680
>gb|AY573573.2| Populus tremula x Populus tremuloides cellulose synthase (CesA3-1)
mRNA, complete cds
Length = 3250
Score = 58.0 bits (29), Expect = 3e-007
Identities = 125/157 (79%)
Strand = Plus / Minus
Query: 303 tgacccagagcagggagaagatggaggccagcagcacggaccagatgacgacaatggtgg 362
||||||||| || ||||||| ||||||| |||||| ||||| | || |||||||| |
Sbjct: 2912 tgacccagacaagagagaagacagaggccaacagcactgaccacagcacaacaatggttg 2853
Query: 363 gcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgaccc 422
| || ||||| ||||| ||||| || || || ||||| || ||||| || | || ||||
Sbjct: 2852 gtgttcggttttggcgacccatcagacctttaaggaatggatagagatgaagaatcaccc 2793
Query: 423 agaaggcgaagaagagcttgccgaagagcgggcccca 459
||||||| ||||||| |||||| ||||| || |||||
Sbjct: 2792 agaaggcaaagaagaccttgccaaagagaggtcccca 2756
>gb|BU897334.1|BU897334 X055D05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 56.0 bits (28), Expect = 1e-006
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| |||||
Sbjct: 112 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgaca 53
Query: 353 acaatggtgggcgtcc 368
||||| ||||| ||||
Sbjct: 52 acaatagtgggtgtcc 37
>gb|CF227502.1|CF227502 PtaD6G2G0214 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 747
Score = 56.0 bits (28), Expect = 1e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 368 cggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaag 427
||||||||||| ||||| || ||||||||||| ||||| || || | || ||||||||
Sbjct: 230 cggttctggcgtcccatcagacccttgaggaaagggtaaagatgaataatcacccagaaa 171
Query: 428 gcgaagaagagcttgccgaagagcgggcccca 459
|| ||||| |||||||| ||||| || |||||
Sbjct: 170 gcaaagaaaagcttgccaaagaggggacccca 139
>gb|CK091716.1|CK091716 F120P33.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F120P33 3', mRNA sequence
Length = 570
Score = 56.0 bits (28), Expect = 1e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 388 ccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaa 447
|||||||||||||||||| |||||||| || ||||| || || ||||| ||||| || ||
Sbjct: 492 ccccttgaggaacgggtaaaggtggacaattacccacaatgcaaagaatagcttaccaaa 551
Query: 448 gagcgggcccca 459
||| || |||||
Sbjct: 552 gagtggacccca 563
>gb|CK101805.1|CK101805 F120P33.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F120P33 5', mRNA sequence
Length = 375
Score = 56.0 bits (28), Expect = 1e-006
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 388 ccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagcttgccgaa 447
|||||||||||||||||| |||||||| || ||||| || || ||||| ||||| || ||
Sbjct: 79 ccccttgaggaacgggtaaaggtggacaattacccacaatgcaaagaatagcttaccaaa 20
Query: 448 gagcgggcccca 459
||| || |||||
Sbjct: 19 gagtggacccca 8
>gb|CN519879.1|CN519879 GQ0108.B3_I06 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_I06 5', mRNA sequence
Length = 780
Score = 56.0 bits (28), Expect = 1e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 368 cggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaag 427
||||||||||| ||||| || ||||||||||| ||||| || || | || ||||||||
Sbjct: 366 cggttctggcgtcccatcagacccttgaggaaagggtaaagatgaataatcacccagaaa 307
Query: 428 gcgaagaagagcttgccgaagagcgggcccca 459
|| ||||| |||||||| ||||| || |||||
Sbjct: 306 gcaaagaaaagcttgccaaagaggggacccca 275
>gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_H23 5', mRNA sequence
Length = 833
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 386 agccccttgaggaacgggtagaggtggacgatgacccagaaggc 429
||||| |||||||| ||||||||||||| ||||||||| |||||
Sbjct: 390 agccctttgaggaaggggtagaggtggaggatgacccataaggc 347
>gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 3', mRNA sequence
Length = 853
Score = 56.0 bits (28), Expect = 1e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 368 cggttctggcgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaag 427
||||||||||| ||||| || ||||||||||| ||||| || || | || ||||||||
Sbjct: 453 cggttctggcgtcccatcagacccttgaggaaagggtaaagatgaataatcacccagaaa 512
Query: 428 gcgaagaagagcttgccgaagagcgggcccca 459
|| ||||| |||||||| ||||| || |||||
Sbjct: 513 gcaaagaaaagcttgccaaagaggggacccca 544
>gb|CF237143.1|CF237143 Ptajxtjxt2F11F1111 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 311
Score = 54.0 bits (27), Expect = 5e-006
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 293 ggatcgatcctgacccagagcagggagaagatggaggccagcagcacggaccagatgacg 352
|||||||| | |||||| |||| |||||||||||| |||| ||||| ||||| |||||
Sbjct: 78 ggatcgattcggacccatagcaaggagaagatggaagccaagagcactgaccatatgaca 19
Query: 353 acaatggtggg 363
||||| |||||
Sbjct: 18 acaatagtggg 8
>gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 502
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 386 agccccttgaggaacgggtagaggtggacgatgaccca 423
||||| |||||||| ||||||||||||| |||||||||
Sbjct: 370 agccctttgaggaaggggtagaggtggaggatgaccca 333
>gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 450
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 386 agccccttgaggaacgggtagaggtggacgatgaccca 423
||||| |||||||| ||||||||||||| |||||||||
Sbjct: 370 agccctttgaggaaggggtagaggtggaggatgaccca 333
>gb|BI138973.1|BI138973 F120P33Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 425
Score = 52.0 bits (26), Expect = 2e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 388 ccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaagagctt 441
|||||||||||||||||| |||||||| || ||||| || || ||||| |||||
Sbjct: 81 ccccttgaggaacgggtaaaggtggacaattacccacaatgcaaagaatagctt 28
>gb|CF228296.1|CF228296 PtaXM0011D10D1008 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 460
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 386 agccccttgaggaacgggtagaggtggacgatgaccca 423
||||| |||||||| ||||||||||||| |||||||||
Sbjct: 105 agccctttgaggaaggggtagaggtggaggatgaccca 68
>gb|BP931353.1|BP931353 BP931353 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-022_F10.r 3', mRNA sequence
Length = 677
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 386 agccccttgaggaacgggtagaggtggacgatgaccca 423
||||| |||||||| ||||||||||||| |||||||||
Sbjct: 364 agccctttgaggaaggggtagaggtggaggatgaccca 401
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,010
Number of Sequences: 369679
Number of extensions: 55010
Number of successful extensions: 14773
Number of sequences better than 0.5: 100
Number of HSP's better than 0.5 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14637
Number of HSP's gapped (non-prelim): 136
length of query: 526
length of database: 203,408,664
effective HSP length: 19
effective length of query: 507
effective length of database: 196,384,763
effective search space: 99567074841
effective search space used: 99567074841
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)