BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN21e06.xg.2.1
(704 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK088529.1|CK088529 A057P60.3pR Hybrid aspen plasmid lib... 48 5e-004
gb|CK099233.1|CK099233 A057P60.5pR Hybrid aspen plasmid lib... 48 5e-004
gb|CN549510.1|CN549510 GQ0242.B3_N23 GQ024 Populus trichoca... 48 5e-004
gb|CN550319.1|CN550319 GQ0241.B3_E02 GQ024 Populus trichoca... 48 5e-004
gb|CV230711.1|CV230711 WS0192.B21_G13 PT-DX-N-A-10 Populus ... 48 5e-004
gb|AY919619.1| Populus trichocarpa class III HD-Zip protein... 48 5e-004
gb|AY919617.1| Populus trichocarpa class III HD-Zip protein... 46 0.002
gb|CV248269.1|CV248269 WS01120.B21_A23 PT-P-FL-A-2 Populus ... 38 0.44
gb|DT478225.1|DT478225 WS02522.BR_D04 PT-MB-N-A-15 Populus ... 38 0.44
gb|AY919618.1| Populus trichocarpa class III HD-Zip protein... 38 0.44
>gb|CK088529.1|CK088529 A057P60.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A057P60 3', mRNA sequence
Length = 539
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttctc 425
|||||||||||||| || ||||| ||||||||||||
Sbjct: 324 gtctcctacgagcaggcggttgcatggaaagttctc 289
>gb|CK099233.1|CK099233 A057P60.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A057P60 5', mRNA sequence
Length = 594
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttctc 425
|||||||||||||| || ||||| ||||||||||||
Sbjct: 403 gtctcctacgagcaggcggttgcatggaaagttctc 438
>gb|CN549510.1|CN549510 GQ0242.B3_N23 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_N23 5', mRNA sequence
Length = 360
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttctc 425
|||||||||||||| || ||||| ||||||||||||
Sbjct: 109 gtctcctacgagcaggcggttgcatggaaagttctc 144
>gb|CN550319.1|CN550319 GQ0241.B3_E02 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_E02 5', mRNA sequence
Length = 816
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttctc 425
|||||||||||||| || ||||| ||||||||||||
Sbjct: 578 gtctcctacgagcaggcggttgcatggaaagttctc 613
>gb|CV230711.1|CV230711 WS0192.B21_G13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0192_G13 3', mRNA sequence
Length = 351
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttctc 425
|||||||||||||| || ||||| ||||||||||||
Sbjct: 77 gtctcctacgagcaggcggttgcatggaaagttctc 112
>gb|AY919619.1| Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete
cds
Length = 2535
Score = 48.1 bits (24), Expect = 5e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttctc 425
|||||||||||||| || ||||| ||||||||||||
Sbjct: 2440 gtctcctacgagcaggcggttgcatggaaagttctc 2475
>gb|AY919617.1| Populus trichocarpa class III HD-Zip protein 2 (HB2) mRNA, complete
cds
Length = 2535
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 399 gagcaagctgttgcttggaaagt 421
|||||||||||||||||||||||
Sbjct: 2446 gagcaagctgttgcttggaaagt 2468
>gb|CV248269.1|CV248269 WS01120.B21_A23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A23 3', mRNA sequence
Length = 669
Score = 38.2 bits (19), Expect = 0.44
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttct 424
|||||||||||||| || |||| |||||||||||
Sbjct: 431 gtctcctacgagcaggccattgcatggaaagttct 397
>gb|DT478225.1|DT478225 WS02522.BR_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_D04 5', mRNA sequence
Length = 791
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 404 agctgttgcttggaaagtt 422
|||||||||||||||||||
Sbjct: 758 agctgttgcttggaaagtt 776
>gb|AY919618.1| Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete
cds
Length = 2532
Score = 38.2 bits (19), Expect = 0.44
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 390 gtctcctacgagcaagctgttgcttggaaagttct 424
|||||||||||||| || |||| |||||||||||
Sbjct: 2437 gtctcctacgagcaggccattgcatggaaagttct 2471
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,064
Number of Sequences: 369679
Number of extensions: 69064
Number of successful extensions: 18669
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18654
Number of HSP's gapped (non-prelim): 15
length of query: 704
length of database: 203,408,664
effective HSP length: 19
effective length of query: 685
effective length of database: 196,384,763
effective search space: 134523562655
effective search space used: 134523562655
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)