BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV130599.1|CV130599 B9SP06e11 Populus stem seasonal libr... 117 6e-025
gb|CF235007.1|CF235007 PtaJXT0017G2G0214 Poplar cDNA librar... 101 3e-020
gb|CN518843.1|CN518843 GQ0102.B3_N15 GQ010 Populus trichoca... 86 2e-015
gb|CX170067.1|CX170067 A03_69-2_01.ab1 leaf inoculated with... 86 2e-015
gb|CA924252.1|CA924252 MTU7CL.P3.E09 Aspen leaf cDNA Librar... 78 5e-013
gb|AI161768.1|AI161768 A006P56U Hybrid aspen plasmid librar... 74 8e-012
gb|BI130693.1|BI130693 G109P36Y Populus cambium cDNA librar... 68 5e-010
gb|BU816816.1|BU816816 N071F08 Populus bark cDNA library Po... 60 1e-007
gb|CN517658.1|CN517658 GQ0092.B3_H09 GQ009 Populus trichoca... 60 1e-007
gb|BI119647.1|BI119647 F003P03Y Populus flower cDNA library... 54 7e-006
gb|CV241047.1|CV241047 WS02511.B21_B06 PT-MB-N-A-15 Populus... 54 7e-006
gb|BU816560.1|BU816560 N066F09 Populus bark cDNA library Po... 52 3e-005
gb|BU882471.1|BU882471 UM77TD04 Populus flower cDNA library... 52 3e-005
gb|BU882839.1|BU882839 UM82TH11 Populus flower cDNA library... 52 3e-005
gb|AJ767093.1|AJ767093 AJ767093 Populus euphratica leaf adu... 52 3e-005
gb|DN501301.1|DN501301 UM82TH11.5pR Populus female catkins ... 52 3e-005
gb|CK319187.1|CK319187 X9P07h03 Populus stem seasonal libra... 50 1e-004
gb|BU815165.1|BU815165 N038A06 Populus bark cDNA library Po... 48 4e-004
gb|BU831076.1|BU831076 T016H07 Populus apical shoot cDNA li... 48 4e-004
gb|BU834887.1|BU834887 T066H09 Populus apical shoot cDNA li... 48 4e-004
gb|BU892831.1|BU892831 P070A09 Populus petioles cDNA librar... 48 4e-004
gb|AJ775854.1|AJ775854 AJ775854 Populus euphratica root 3-6... 48 4e-004
gb|DN499003.1|DN499003 T016H07.5pR Populus shoot meristem c... 48 4e-004
gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Po... 44 0.007
gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Popul... 44 0.007
gb|DT509771.1|DT509771 WS02424.BR_K20 PTxD-ICC-N-A-14 Popul... 44 0.007
gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Popu... 44 0.007
gb|BU880404.1|BU880404 UM45TE12 Populus flower cDNA library... 42 0.027
gb|DN500996.1|DN500996 UM45TE12.5pR Populus female catkins ... 42 0.027
gb|DV464576.1|DV464576 MTUNUL1.P29.C05 NUL Populus fremonti... 42 0.027
gb|CX173886.1|CX173886 B11_69-113_03.ab1 leaf inoculated wi... 40 0.11
gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA librar... 38 0.43
gb|BU821608.1|BU821608 UB25CPE04 Populus tremula cambium cD... 38 0.43
gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library ... 38 0.43
gb|CA822124.1|CA822124 R04A09 two-month-old roots from clon... 38 0.43
gb|CV263587.1|CV263587 WS02022.B21_E03 PTxN-IB-N-A-11 Popul... 38 0.43
gb|CV274393.1|CV274393 WS0173.B21_C04 PTxD-NR-A-8 Populus t... 38 0.43
gb|DT469933.1|DT469933 WS01919.C21_F19 PT-DX-N-A-10 Populus... 38 0.43
>gb|CV130599.1|CV130599 B9SP06e11 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 879
Score = 117 bits (59), Expect = 6e-025
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||||||||||||||| |||||||||||| | ||||| || || ||||| ||||||
Sbjct: 280 atggggaggcattcttgctgttacaagcagaagttaagaaaaggcctgtggtctcctgag 339
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|||||||||||||| ||||| | || || |||||||| |||||||| |||||||||||
Sbjct: 340 gaggatgagaaacttctgaattatattactaagcatggacatggctgttggagctctgt 398
Score = 63.9 bits (32), Expect = 7e-009
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| ||| | || || || |||||||||||||| |||||| ||||||||
Sbjct: 547 tctcagattgcagcacagttacctggaagaactgataatgagataaagaatttatggaac 606
Query: 614 tcnnncatcaagnnnnnnctgaggcagaaaggcattgatcccaacac 660
|| ||| ||| |||||||||| ||||||||| ||||||||
Sbjct: 607 tcctgcattaagaagaagctgaggcagagaggcattgaccccaacac 653
>gb|CF235007.1|CF235007 PtaJXT0017G2G0214 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 725
Score = 101 bits (51), Expect = 3e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
|||||||||||||||||||| |||||||||||| | ||||| || || ||||| ||||||
Sbjct: 229 atggggaggcattcttgctgttacaagcagaagttaagaaaaggcctgtggtctcctgag 288
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|| |||||||| || ||||| | || || |||||||| |||||||| |||||||||||
Sbjct: 289 gaagatgagaagcttctgaattatattactaagcatggacatggctgttggagctctgt 347
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| |||||||| ||| | || || || |||||||||||||| |||||| ||||||||
Sbjct: 496 tctcagattgcagcacagttacctggaagaactgataatgagataaagaatttatggaac 555
Query: 614 tc 615
||
Sbjct: 556 tc 557
>gb|CN518843.1|CN518843 GQ0102.B3_N15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_N15 5', mRNA sequence
Length = 570
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| ||||| ||||||||||||||||| || || || || ||||| ||||||
Sbjct: 174 atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctgtggtcgcctgag 233
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|| |||||||||||| | | || || || ||| |||||||||| || |||||||||||
Sbjct: 234 gaagatgagaaactcttaaggcatatcaccaagtatggccatggttgttggagctctgt 292
>gb|CX170067.1|CX170067 A03_69-2_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 669
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| ||||| ||||||||||||||||| || || || || ||||| ||||||
Sbjct: 200 atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctgtggtcgcctgag 259
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|| |||||||||||| | | || || || ||| |||||||||| || |||||||||||
Sbjct: 260 gaagatgagaaactcttaaggcatatcaccaagtatggccatggttgttggagctctgt 318
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 581 aggactgataatgagatcaagaatctatggaactc 615
||||| || ||||| || |||||||||||||||||
Sbjct: 494 aggacagacaatgaaataaagaatctatggaactc 528
>gb|CA924252.1|CA924252 MTU7CL.P3.E09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 747
Score = 77.8 bits (39), Expect = 5e-013
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| ||||| ||||||||||||||||| || || || || ||||| || |||
Sbjct: 571 atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctgtggtcgcccgag 512
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|| |||||||||||| | | || || || ||| |||||||||| || |||||||||||
Sbjct: 511 gaagatgagaaactcttaaggcatatcaccaagtatggccatggttgttggagctctgt 453
Score = 44.1 bits (22), Expect = 0.007
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||| ||||| || ||| |||| || ||||| || ||||| || |||||||||||||||
Sbjct: 304 tctcagattgcggcacagttgcccggaaggacagacaatgaaataaagaatctatggaac 245
Query: 614 tc 615
||
Sbjct: 244 tc 243
>gb|AI161768.1|AI161768 A006P56U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 448
Score = 73.8 bits (37), Expect = 8e-012
Identities = 97/116 (83%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 287 gggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggag 346
||||||||| ||||||| |||||||||||| | ||||| || || | ||| ||||||||
Sbjct: 155 gggaggcat-cttgctgttacaagcagaagttaagaaaaggcctgtngtctcctgaggaa 213
Query: 347 gatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|||||||| || ||||| | || || |||||||| |||||||| |||||||||||
Sbjct: 214 gatgagaagcttctgaattatattactaagcatggacatggctgttggagctctgt 269
>gb|BI130693.1|BI130693 G109P36Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 311
Score = 67.9 bits (34), Expect = 5e-010
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacctcaagagagg 486
|||||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct: 181 agttgtagactgaggtggataaactacctgaggcctgatctcaagagagg 230
>gb|BU816816.1|BU816816 N071F08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 385
Score = 60.0 bits (30), Expect = 1e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagac 475
|||||||||||||| || |||||||||||||| |||||||||
Sbjct: 223 aagagttgtaggctaagatggataaactatcttaggccagac 264
>gb|CN517658.1|CN517658 GQ0092.B3_H09 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H09 5', mRNA sequence
Length = 532
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 437 agttgtaggctgaggtggataaactatctgaggccagacctcaagagagg 486
|||||||| ||||||||||||||||| || ||||| || |||||||||||
Sbjct: 52 agttgtagactgaggtggataaactacctaaggcctgatctcaagagagg 101
>gb|BI119647.1|BI119647 F003P03Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 337
Score = 54.0 bits (27), Expect = 7e-006
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 437 agttgtaggctgaggtggataaactatctgaggccagac 475
||||||||||| || |||||||||||||| |||||||||
Sbjct: 184 agttgtaggctaagatggataaactatcttaggccagac 222
>gb|CV241047.1|CV241047 WS02511.B21_B06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_B06 3', mRNA sequence
Length = 766
Score = 54.0 bits (27), Expect = 7e-006
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 573 tgccagggaggactgataatgagatcaagaa 603
|||||||||| ||||||||||||||||||||
Sbjct: 759 tgccagggagaactgataatgagatcaagaa 729
>gb|BU816560.1|BU816560 N066F09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 3e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagac 475
|||||||||||||| || |||||||||||||| | |||||||
Sbjct: 219 aagagttgtaggctaagatggataaactatcttatgccagac 260
>gb|BU882471.1|BU882471 UM77TD04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 388
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 413 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 472
|||||||||||||| ||||| ||||| ||||| || ||||||| ||||| || |||||
Sbjct: 228 gctgggcttcaaagatgcgggaagagctgtagactcaggtggactaactacctccggcca 287
Query: 473 gacctcaagagagg 486
|| ||||||||||
Sbjct: 288 gatatcaagagagg 301
>gb|BU882839.1|BU882839 UM82TH11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 584
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 413 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 472
|||||||||||||| ||||| ||||| ||||| || ||||||| ||||| || |||||
Sbjct: 228 gctgggcttcaaagatgcgggaagagctgtagactcaggtggactaactacctccggcca 287
Query: 473 gacctcaagagagg 486
|| ||||||||||
Sbjct: 288 gatatcaagagagg 301
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaat 604
|||||||||||||||||||||
Sbjct: 396 actgataatgagatcaagaat 416
>gb|AJ767093.1|AJ767093 AJ767093 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100001D02F1, mRNA sequence
Length = 573
Score = 52.0 bits (26), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 437 agttgtaggctgaggtggataaactatctgaggccaga 474
||||||||||| || |||||||||||||| ||||||||
Sbjct: 82 agttgtaggctaagatggataaactatcttaggccaga 119
>gb|DN501301.1|DN501301 UM82TH11.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM82TH11 5', mRNA sequence
Length = 716
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 413 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 472
|||||||||||||| ||||| ||||| ||||| || ||||||| ||||| || |||||
Sbjct: 228 gctgggcttcaaagatgcgggaagagctgtagactcaggtggactaactacctccggcca 287
Query: 473 gacctcaagagagg 486
|| ||||||||||
Sbjct: 288 gatatcaagagagg 301
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaat 604
|||||||||||||||||||||
Sbjct: 396 actgataatgagatcaagaat 416
>gb|CK319187.1|CK319187 X9P07h03 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 776
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 572 ctgccagggaggactgataatgagatcaagaat 604
||||| || ||||||||||||||||||||||||
Sbjct: 319 ctgcctggaaggactgataatgagatcaagaat 351
>gb|BU815165.1|BU815165 N038A06 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 693
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 440 tgtaggctgaggtggataaactatctgaggccagac 475
|||||||| || |||||||||||||| |||||||||
Sbjct: 330 tgtaggctcagatggataaactatcttaggccagac 365
>gb|BU831076.1|BU831076 T016H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 714
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 440 tgtaggctgaggtggataaactatctgaggccagac 475
|||||||| || |||||||||||||| |||||||||
Sbjct: 251 tgtaggctcagatggataaactatcttaggccagac 286
>gb|BU834887.1|BU834887 T066H09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 494
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 440 tgtaggctgaggtggataaactatctgaggccagac 475
|||||||| || |||||||||||||| |||||||||
Sbjct: 251 tgtaggctcagatggataaactatcttaggccagac 286
>gb|BU892831.1|BU892831 P070A09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 674
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 419 cttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccaga 474
|||||||| || |||||||| || ||||| || |||| |||||||||||||||||
Sbjct: 152 cttcaaagatgtggaaagagctgcaggcttagatggactaactatctgaggccaga 207
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 580 gaggactgataatgagatcaagaat 604
|||||| ||||||||||||||||||
Sbjct: 310 gaggacagataatgagatcaagaat 334
>gb|AJ775854.1|AJ775854 AJ775854 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400006D03F1, mRNA sequence
Length = 626
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 559 aattgcagcgcagctgccagggaggactgataatga 594
||||||||| ||| ||||||| ||||||||||||||
Sbjct: 169 aattgcagctcagttgccaggcaggactgataatga 204
>gb|DN499003.1|DN499003 T016H07.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T016H07 5', mRNA sequence
Length = 779
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 440 tgtaggctgaggtggataaactatctgaggccagac 475
|||||||| || |||||||||||||| |||||||||
Sbjct: 251 tgtaggctcagatggataaactatcttaggccagac 286
>gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B05 5', mRNA sequence
Length = 673
Score = 44.1 bits (22), Expect = 0.007
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 413 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 472
|||||| | |||||||| |||||||||||| | || | |||| ||||||||||||||
Sbjct: 146 gctgggttgcaaaggtgtggaaagagttgtcgtcttcgttggactaactatctgaggcct 205
Query: 473 gacctcaagagagg 486
|| ||||||||||
Sbjct: 206 gatatcaagagagg 219
>gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 5', mRNA sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.007
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||||||||||||||| ||| | |||||||| ||||||| | |||||||||
Sbjct: 664 aagagttgtaggctgagatggcttaactatcttcggccagatattaagagaggg 611
>gb|DT509771.1|DT509771 WS02424.BR_K20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_K20 5', mRNA sequence
Length = 803
Score = 44.1 bits (22), Expect = 0.007
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
|||||||| ||||| || || ||||||||| ||| ||||||||||| || ||||||||
Sbjct: 145 aggtgcgggaagagctgcagattgaggtggacaaattatctgaggcctgatatcaagaga 204
Query: 485 gg 486
||
Sbjct: 205 gg 206
>gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 3', mRNA sequence
Length = 897
Score = 44.1 bits (22), Expect = 0.007
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 487
||||||||||||||||| ||| | |||||||| ||||||| | |||||||||
Sbjct: 486 aagagttgtaggctgagatggcttaactatcttcggccagatattaagagaggg 539
>gb|BU880404.1|BU880404 UM45TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 580 gaggactgataatgagatcaagaat 604
|||||| ||||||||||||||||||
Sbjct: 321 gaggacagataatgagatcaagaat 345
>gb|DN500996.1|DN500996 UM45TE12.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM45TE12 5', mRNA sequence
Length = 801
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 580 gaggactgataatgagatcaagaat 604
|||||| ||||||||||||||||||
Sbjct: 320 gaggacagataatgagatcaagaat 344
>gb|DV464576.1|DV464576 MTUNUL1.P29.C05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 775
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 580 gaggactgataatgagatcaagaat 604
|||||| ||||||||||||||||||
Sbjct: 312 gaggacagataatgagatcaagaat 336
>gb|CX173886.1|CX173886 B11_69-113_03.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggcc 471
||||| ||||| ||||| |||||||||||||||| |||||||
Sbjct: 400 tgcggcaagagctgtagattgaggtggataaactacttgaggcc 443
>gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 557
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 587 gataatgagatcaagaatc 605
|||||||||||||||||||
Sbjct: 328 gataatgagatcaagaatc 346
>gb|BU821608.1|BU821608 UB25CPE04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 446
Score = 38.2 bits (19), Expect = 0.43
Identities = 67/83 (80%)
Strand = Plus / Plus
Query: 383 catggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgt 442
||||| ||||||||||| ||||| ||||| || || || || || || |||||||| ||
Sbjct: 312 catggttgctggagctcagttcctaaacttgcaggtctgcagagatgtggaaagagctgc 371
Query: 443 aggctgaggtggataaactatct 465
|| || || |||||||| |||||
Sbjct: 372 agactaagatggataaattatct 394
>gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 450
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 587 gataatgagatcaagaatc 605
|||||||||||||||||||
Sbjct: 290 gataatgagatcaagaatc 308
>gb|CA822124.1|CA822124 R04A09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 690
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 587 gataatgagatcaagaatc 605
|||||||||||||||||||
Sbjct: 366 gataatgagatcaagaatc 384
>gb|CV263587.1|CV263587 WS02022.B21_E03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_E03 3', mRNA sequence
Length = 941
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 587 gataatgagatcaagaatc 605
|||||||||||||||||||
Sbjct: 908 gataatgagatcaagaatc 890
>gb|CV274393.1|CV274393 WS0173.B21_C04 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_C04 3', mRNA sequence
Length = 932
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 587 gataatgagatcaagaatc 605
|||||||||||||||||||
Sbjct: 923 gataatgagatcaagaatc 905
>gb|DT469933.1|DT469933 WS01919.C21_F19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_F19 3', mRNA sequence
Length = 868
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 587 gataatgagatcaagaatc 605
|||||||||||||||||||
Sbjct: 782 gataatgagatcaagaatc 764
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,674
Number of Sequences: 369679
Number of extensions: 78674
Number of successful extensions: 21506
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21445
Number of HSP's gapped (non-prelim): 58
length of query: 687
length of database: 203,408,664
effective HSP length: 19
effective length of query: 668
effective length of database: 196,384,763
effective search space: 131185021684
effective search space used: 131185021684
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)