BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBH4g04.xg.3.1
(1549 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ775497.1|AJ775497 AJ775497 Populus euphratica shoot 3-... 50 3e-004
gb|AJ777679.1|AJ777679 AJ777679 Populus euphratica root 3-6... 50 3e-004
gb|CF235237.1|CF235237 PtaJXT0020D6D0608 Poplar cDNA librar... 42 0.063
gb|CF235630.1|CF235630 PtaJXT0025B2B0204 Poplar cDNA librar... 42 0.063
gb|CF236392.1|CF236392 PtaJXT2C2C0206 Poplar cDNA library f... 42 0.063
gb|CF236466.1|CF236466 PtaJXT3B5B0503 Poplar cDNA library f... 42 0.063
gb|CF236720.1|CF236720 PtaJXT6D6D0608 Poplar cDNA library f... 42 0.063
gb|CN518443.1|CN518443 GQ0093.B3_L06 GQ009 Populus trichoca... 42 0.063
gb|CN518765.1|CN518765 GQ0102.B3_C12 GQ010 Populus trichoca... 42 0.063
gb|CN523475.1|CN523475 GQ015M02.T3_F01 GQ015 Populus tricho... 42 0.063
gb|CN523958.1|CN523958 GQ015M02.T3_A05 GQ015 Populus tricho... 42 0.063
gb|CN524279.1|CN524279 GQ015M14.T3_F08 GQ015 Populus tricho... 42 0.063
gb|CN524676.1|CN524676 GQ015M14.T3_E10 GQ015 Populus tricho... 42 0.063
gb|CN550287.1|CN550287 GQ0243.B3_G06 GQ024 Populus trichoca... 42 0.063
gb|AJ776143.1|AJ776143 AJ776143 Populus euphratica root 3-6... 42 0.063
gb|CX176970.1|CX176970 D06_69-75_08.ab1 leaf inoculated wit... 42 0.063
gb|DT470642.1|DT470642 WS0121.BR_P21 PT-GT-FL-A-3 Populus t... 42 0.063
gb|DT471730.1|DT471730 WS01214.BR_O03 PT-GT-FL-A-3 Populus ... 42 0.063
gb|DT472383.1|DT472383 WS01226.BR.1_E10 PT-GT-FL-A-3 Populu... 42 0.063
gb|DT472826.1|DT472826 WS01227.BR_F02 PT-GT-FL-A-3 Populus ... 42 0.063
gb|DT473608.1|DT473608 WS0123.BR_C24 PT-GT-FL-A-3 Populus t... 42 0.063
gb|DT473647.1|DT473647 WS0123.BR_E21 PT-GT-FL-A-3 Populus t... 42 0.063
gb|DT474014.1|DT474014 WS01230.BR_H16 PT-GT-FL-A-3 Populus ... 42 0.063
gb|DT474200.1|DT474200 WS01231.BR_C17 PT-GT-FL-A-3 Populus ... 42 0.063
gb|DT475005.1|DT475005 WS0125.BR_L03 PT-GT-FL-A-3 Populus t... 42 0.063
gb|DT475267.1|DT475267 WS0126.BR_J04 PT-GT-FL-A-3 Populus t... 42 0.063
gb|DT475917.1|DT475917 WS0128.BR_K09 PT-GT-FL-A-3 Populus t... 42 0.063
gb|DT478338.1|DT478338 WS02522.BR_I06 PT-MB-N-A-15 Populus ... 42 0.063
gb|DT482127.1|DT482127 WS02533.BR_P19 PT-MB-N-A-15 Populus ... 42 0.063
gb|DT500720.1|DT500720 PX0019.BR.1_N18 PT-X-FL-A-1 Populus ... 42 0.063
gb|DV465533.1|DV465533 MTUNUL1.P4.H01 NUL Populus fremontii... 42 0.063
>gb|AJ775497.1|AJ775497 AJ775497 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300033C02F1, mRNA sequence
Length = 592
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||||||||||||||| |||||||||||
Sbjct: 110 ttcggcgagatgctgatagacttcgtccc 138
>gb|AJ777679.1|AJ777679 AJ777679 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400033F03F1, mRNA sequence
Length = 662
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||||||||||||||| |||||||||||
Sbjct: 105 ttcggcgagatgctgatagacttcgtccc 133
>gb|CF235237.1|CF235237 PtaJXT0020D6D0608 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 770
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 140 ttcggggagatgctgatagacttcgtccc 168
>gb|CF235630.1|CF235630 PtaJXT0025B2B0204 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 135 ttcggggagatgctgatagacttcgtccc 163
>gb|CF236392.1|CF236392 PtaJXT2C2C0206 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 126 ttcggggagatgctgatagacttcgtccc 154
>gb|CF236466.1|CF236466 PtaJXT3B5B0503 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 125 ttcggggagatgctgatagacttcgtccc 153
>gb|CF236720.1|CF236720 PtaJXT6D6D0608 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 116 ttcggggagatgctgatagacttcgtccc 144
>gb|CN518443.1|CN518443 GQ0093.B3_L06 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_L06 5', mRNA sequence
Length = 502
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 117 ttcggggagatgctgatagacttcgtccc 145
>gb|CN518765.1|CN518765 GQ0102.B3_C12 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_C12 5', mRNA sequence
Length = 725
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 127 ttcggggagatgctgatagacttcgtccc 155
>gb|CN523475.1|CN523475 GQ015M02.T3_F01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M02_F01 5', mRNA sequence
Length = 781
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 115 ttcggggagatgctgatagacttcgtccc 143
>gb|CN523958.1|CN523958 GQ015M02.T3_A05 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M02_A05 5', mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 107 ttcggggagatgctgatagacttcgtccc 135
>gb|CN524279.1|CN524279 GQ015M14.T3_F08 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M14_F08 5', mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 116 ttcggggagatgctgatagacttcgtccc 144
>gb|CN524676.1|CN524676 GQ015M14.T3_E10 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M14_E10 5', mRNA sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 113 ttcggggagatgctgatagacttcgtccc 141
>gb|CN550287.1|CN550287 GQ0243.B3_G06 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_G06 5', mRNA sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 77 ttcggggagatgctgatagacttcgtccc 105
>gb|AJ776143.1|AJ776143 AJ776143 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400009G04F1, mRNA sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 106 ttcggggagatgctgatagacttcgtccc 134
>gb|CX176970.1|CX176970 D06_69-75_08.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 116 ttcggggagatgctgatagacttcgtccc 144
>gb|DT470642.1|DT470642 WS0121.BR_P21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0121_P21 5', mRNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 141 ttcggggagatgctgatagacttcgtccc 169
>gb|DT471730.1|DT471730 WS01214.BR_O03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_O03 5', mRNA sequence
Length = 433
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 141 ttcggggagatgctgatagacttcgtccc 169
>gb|DT472383.1|DT472383 WS01226.BR.1_E10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_E10 5', mRNA sequence
Length = 903
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 138 ttcggggagatgctgatagacttcgtccc 166
>gb|DT472826.1|DT472826 WS01227.BR_F02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_F02 5', mRNA sequence
Length = 799
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 144 ttcggggagatgctgatagacttcgtccc 172
>gb|DT473608.1|DT473608 WS0123.BR_C24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0123_C24 5', mRNA sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 141 ttcggggagatgctgatagacttcgtccc 169
>gb|DT473647.1|DT473647 WS0123.BR_E21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0123_E21 5', mRNA sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 141 ttcggggagatgctgatagacttcgtccc 169
>gb|DT474014.1|DT474014 WS01230.BR_H16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_H16 5', mRNA sequence
Length = 950
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 136 ttcggggagatgctgatagacttcgtccc 164
>gb|DT474200.1|DT474200 WS01231.BR_C17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_C17 5', mRNA sequence
Length = 880
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 136 ttcggggagatgctgatagacttcgtccc 164
>gb|DT475005.1|DT475005 WS0125.BR_L03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_L03 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 141 ttcggggagatgctgatagacttcgtccc 169
>gb|DT475267.1|DT475267 WS0126.BR_J04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_J04 5', mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 136 ttcggggagatgctgatagacttcgtccc 164
>gb|DT475917.1|DT475917 WS0128.BR_K09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_K09 5', mRNA sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 141 ttcggggagatgctgatagacttcgtccc 169
>gb|DT478338.1|DT478338 WS02522.BR_I06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_I06 5', mRNA sequence
Length = 868
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 115 ttcggggagatgctgatagacttcgtccc 143
>gb|DT482127.1|DT482127 WS02533.BR_P19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_P19 5', mRNA sequence
Length = 881
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 118 ttcggggagatgctgatagacttcgtccc 146
>gb|DT500720.1|DT500720 PX0019.BR.1_N18 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_N18 5', mRNA sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 138 ttcggggagatgctgatagacttcgtccc 166
>gb|DV465533.1|DV465533 MTUNUL1.P4.H01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
||||| ||||||||||| |||||||||||
Sbjct: 157 ttcggggagatgctgatagacttcgtccc 185
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 103,232
Number of Sequences: 369679
Number of extensions: 103232
Number of successful extensions: 28692
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28660
Number of HSP's gapped (non-prelim): 32
length of query: 1549
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1530
effective length of database: 196,384,763
effective search space: 300468687390
effective search space used: 300468687390
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)