BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU881837.1|BU881837 UM68TB10 Populus flower cDNA library... 48 7e-004
gb|DN484173.1|DN484173 C028P10.3pR Populus strain T89 leave... 48 7e-004
gb|BI138953.1|BI138953 F119P79Y Populus flower cDNA library... 40 0.18
gb|BU896154.1|BU896154 X036D08 Populus wood cDNA library Po... 40 0.18
gb|CX187249.1|CX187249 A04_45-69_02.ab1 leaf inoculated wit... 40 0.18
>gb|BU881837.1|BU881837 UM68TB10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 337
Score = 48.1 bits (24), Expect = 7e-004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 685 ctgaaggacatgatgaagacagaggccgggaaaaggagagctgagaaaaggcataggttc 744
|||||||| ||||||| ||| |||| ||| | ||||| ||||||| ||| || | ||||
Sbjct: 65 ctgaaggatttgatgaaaacaaaggctgggcagaggagggctgagagaagacacaagttc 124
Query: 745 atggaggaattt 756
||||||||||||
Sbjct: 125 atggaggaattt 136
>gb|DN484173.1|DN484173 C028P10.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C028P10 3', mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 7e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 685 ctgaaggacatgatgaagacagaggccgggaaaaggagagctgagaaaaggcataggttc 744
|||||||| ||||||| ||| |||||||| | ||||| ||||||| ||| || | ||||
Sbjct: 230 ctgaaggatttgatgaaaacaaaggccgggcagaggagggctgagagaagacacaagttc 171
Query: 745 atggagga 752
||||||||
Sbjct: 170 atggagga 163
>gb|BI138953.1|BI138953 F119P79Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 507
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 714 gaaaaggagagctgagaaaa 733
||||||||||||||||||||
Sbjct: 292 gaaaaggagagctgagaaaa 273
>gb|BU896154.1|BU896154 X036D08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 714 gaaaaggagagctgagaaaa 733
||||||||||||||||||||
Sbjct: 161 gaaaaggagagctgagaaaa 180
>gb|CX187249.1|CX187249 A04_45-69_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 714 gaaaaggagagctgagaaaa 733
||||||||||||||||||||
Sbjct: 240 gaaaaggagagctgagaaaa 221
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 149,374
Number of Sequences: 369679
Number of extensions: 149374
Number of successful extensions: 43632
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43626
Number of HSP's gapped (non-prelim): 6
length of query: 1105
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1086
effective length of database: 196,384,763
effective search space: 213273852618
effective search space used: 213273852618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)