BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBB9c12.pg.2.1
(545 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV257070.1|CV257070 WS0245.B21_J10 PTxD-ICC-N-A-14 Popul... 42 0.022
gb|DT483393.1|DT483393 WS02522.B21_H12 PT-MB-N-A-15 Populus... 42 0.022
gb|AJ771920.1|AJ771920 AJ771920 Populus euphratica root 3-6... 40 0.085
gb|CV280244.1|CV280244 WS0135.B21_I02 PTxD-IL-FL-A-4 Populu... 40 0.085
gb|CX187196.1|CX187196 F11_45-79_11.ab1 leaf inoculated wit... 40 0.085
gb|DN491046.1|DN491046 UM56TC12.3pR Populus female catkins ... 40 0.085
gb|DT517193.1|DT517193 WS02433.B21_J11 PTxD-ICC-N-A-14 Popu... 40 0.085
>gb|CV257070.1|CV257070 WS0245.B21_J10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_J10 3', mRNA sequence
Length = 809
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 170 tgtttcttcacacattgcggatggaactc 198
||||| |||||||||||||| ||||||||
Sbjct: 443 tgttttttcacacattgcggttggaactc 415
>gb|DT483393.1|DT483393 WS02522.B21_H12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_H12 3', mRNA sequence
Length = 887
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 170 tgtttcttcacacattgcggatggaactc 198
||||| |||||||||||||| ||||||||
Sbjct: 485 tgttttttcacacattgcggttggaactc 457
>gb|AJ771920.1|AJ771920 AJ771920 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600012D08F1, mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.085
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 171 gtttcttcacacattgcggatggaactc 198
||||||| |||||| |||||||||||||
Sbjct: 493 gtttcttaacacatagcggatggaactc 466
>gb|CV280244.1|CV280244 WS0135.B21_I02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_I02 3', mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.085
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 179 acacattgcggatggaactcgaca 202
|||||||||| |||||||||||||
Sbjct: 384 acacattgcgaatggaactcgaca 407
>gb|CX187196.1|CX187196 F11_45-79_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.085
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 170 tgtttcttcacacattgcggatggaact 197
||||| |||||||||||||| |||||||
Sbjct: 646 tgttttttcacacattgcggttggaact 673
>gb|DN491046.1|DN491046 UM56TC12.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM56TC12 3', mRNA sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.085
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 179 acacattgcggatggaactcgaca 202
||||||||||| ||||||||||||
Sbjct: 558 acacattgcggttggaactcgaca 535
>gb|DT517193.1|DT517193 WS02433.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_J11 3', mRNA sequence
Length = 853
Score = 40.1 bits (20), Expect = 0.085
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 179 acacattgcggatggaactcgaca 202
||||||||||| ||||||||||||
Sbjct: 617 acacattgcggttggaactcgaca 594
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,763
Number of Sequences: 369679
Number of extensions: 63763
Number of successful extensions: 17247
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17238
Number of HSP's gapped (non-prelim): 9
length of query: 545
length of database: 203,408,664
effective HSP length: 19
effective length of query: 526
effective length of database: 196,384,763
effective search space: 103298385338
effective search space used: 103298385338
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)