BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB176628.1|CB176628 PopSC00050 Poplar SC cDNA library Po... 40 0.13
gb|CN549316.1|CN549316 GQ0243.B3_M24 GQ024 Populus trichoca... 36 2.0
gb|CN550295.1|CN550295 GQ0244.B3_H15 GQ024 Populus trichoca... 36 2.0
gb|CK318742.1|CK318742 X9P02h02 Populus stem seasonal libra... 36 2.0
gb|CV230367.1|CV230367 WS01916.B21_E23 PT-DX-N-A-10 Populus... 36 2.0
gb|CV230968.1|CV230968 WS0193.B21_C12 PT-DX-N-A-10 Populus ... 36 2.0
gb|CV249604.1|CV249604 WS01124.B21_L17 PT-P-FL-A-2 Populus ... 36 2.0
gb|CV251046.1|CV251046 WS0115.B21_K17 PT-P-FL-A-2 Populus t... 36 2.0
gb|CV251554.1|CV251554 WS0117.B21_H10 PT-P-FL-A-2 Populus t... 36 2.0
gb|CV254810.1|CV254810 WS02411.B21_D24 PTxD-ICC-N-A-14 Popu... 36 2.0
gb|CV265606.1|CV265606 WS02027.B21_L22 PTxN-IB-N-A-11 Popul... 36 2.0
gb|CX168389.1|CX168389 B02_69-4_04.ab1 leaf inoculated with... 36 2.0
gb|DT492917.1|DT492917 WS02552.C21_N12 PT-MB-N-A-15 Populus... 36 2.0
gb|DT496851.1|DT496851 WS01124.BR_L17 PT-P-FL-A-2 Populus t... 36 2.0
gb|BU867256.1|BU867256 S076B04 Populus imbibed seed cDNA li... 34 7.9
gb|BU882056.1|BU882056 UM72TA09 Populus flower cDNA library... 34 7.9
gb|CA931283.1|CA931283 MTU2TA.P5.B11 Aspen apex cDNA Librar... 34 7.9
gb|CA932808.1|CA932808 MTU5CS.P17.G03 Aspen stem cDNA Libra... 34 7.9
gb|CF119027.1|CF119027 MTU10CS.P12.E10 Aspen stem cDNA Libr... 34 7.9
gb|CF235707.1|CF235707 PtaJXT0026B11B1103 Poplar cDNA libra... 34 7.9
gb|CK093632.1|CK093632 G126P62.3pR Populus tension wood cDN... 34 7.9
gb|CV235350.1|CV235350 WS01218.B21_M16 PT-GT-FL-A-3 Populus... 34 7.9
gb|CV261492.1|CV261492 WS02016.B21_O24 PTxN-IB-N-A-11 Popul... 34 7.9
gb|CV262195.1|CV262195 WS02018.B21_O08 PTxN-IB-N-A-11 Popul... 34 7.9
gb|CV262743.1|CV262743 WS0202.B21_G09 PTxN-IB-N-A-11 Populu... 34 7.9
gb|CV264094.1|CV264094 WS02023.B21_J16 PTxN-IB-N-A-11 Popul... 34 7.9
gb|CV272030.1|CV272030 WS0156.B21.1_G20 PTxN-IB-A-6 Populus... 34 7.9
gb|CF936681.1|CF936681 PO3008H11 Populus tomentiglandulosa ... 34 7.9
gb|CF936757.1|CF936757 PO3009H07 Populus tomentiglandulosa ... 34 7.9
gb|CX282601.1|CX282601 17.5.4 Populus tremula X Populus alb... 34 7.9
gb|BP932158.1|BP932158 BP932158 full-length enriched poplar... 34 7.9
gb|DN488615.1|DN488615 S015G10.3pR Populus imbibed seed cDN... 34 7.9
gb|DT523084.1|DT523084 WS02038.B21_L21 PTxN-IB-N-A-11 Popul... 34 7.9
dbj|AB079510.1| Populus kitakamiensis Pklim1 mRNA for trans... 34 7.9
dbj|AB079511.1| Populus kitakamiensis Pklim1 gene for trans... 34 7.9
>gb|CB176628.1|CB176628 PopSC00050 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00050, mRNA sequence
Length = 411
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 628 aatgcgaaaccaaaagaagc 647
||||||||||||||||||||
Sbjct: 291 aatgcgaaaccaaaagaagc 272
>gb|CN549316.1|CN549316 GQ0243.B3_M24 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_M24 5', mRNA sequence
Length = 462
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 141 aatggaagagaagttgct 158
>gb|CN550295.1|CN550295 GQ0244.B3_H15 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0244_H15 5', mRNA sequence
Length = 596
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 247 aatggaagagaagttgct 264
>gb|CK318742.1|CK318742 X9P02h02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 715
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 633 aatggaagagaagttgct 650
>gb|CV230367.1|CV230367 WS01916.B21_E23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01916_E23 3', mRNA sequence
Length = 662
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 372 aatggaagagaagttgct 355
>gb|CV230968.1|CV230968 WS0193.B21_C12 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_C12 3', mRNA sequence
Length = 445
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 380 aatggaagagaagttgct 363
>gb|CV249604.1|CV249604 WS01124.B21_L17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_L17 3', mRNA sequence
Length = 680
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 354 aatggaagagaagttgct 337
>gb|CV251046.1|CV251046 WS0115.B21_K17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0115_K17 3', mRNA sequence
Length = 730
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 362 aatggaagagaagttgct 345
>gb|CV251554.1|CV251554 WS0117.B21_H10 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_H10 3', mRNA sequence
Length = 669
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 378 aatggaagagaagttgct 361
>gb|CV254810.1|CV254810 WS02411.B21_D24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_D24 3', mRNA sequence
Length = 923
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 380 aatggaagagaagttgct 363
>gb|CV265606.1|CV265606 WS02027.B21_L22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02027_L22 3', mRNA sequence
Length = 844
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 605 aatggaagagaagttgct 622
>gb|CX168389.1|CX168389 B02_69-4_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 227
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 574 tgttaatgtgaaccttgt 591
||||||||||||||||||
Sbjct: 73 tgttaatgtgaaccttgt 56
>gb|DT492917.1|DT492917 WS02552.C21_N12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_N12 3', mRNA sequence
Length = 824
Score = 36.2 bits (18), Expect = 2.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 587 cttgttgctgtcattgatggta 608
|||||||||||||| |||||||
Sbjct: 195 cttgttgctgtcatggatggta 174
>gb|DT496851.1|DT496851 WS01124.BR_L17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_L17 5', mRNA sequence
Length = 884
Score = 36.2 bits (18), Expect = 2.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgct 349
||||||||||||||||||
Sbjct: 718 aatggaagagaagttgct 735
>gb|BU867256.1|BU867256 S076B04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 571
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 207 ttgttttgagaagcatg 191
>gb|BU882056.1|BU882056 UM72TA09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 591
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 380 ttgttttgagaagcatg 364
>gb|CA931283.1|CA931283 MTU2TA.P5.B11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 470
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 11 ttgttttgagaagcatg 27
>gb|CA932808.1|CA932808 MTU5CS.P17.G03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 289
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 584 aaccttgttgctgtcat 600
|||||||||||||||||
Sbjct: 175 aaccttgttgctgtcat 191
>gb|CF119027.1|CF119027 MTU10CS.P12.E10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 502
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 492 ttgttttgagaagcatg 476
>gb|CF235707.1|CF235707 PtaJXT0026B11B1103 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 767
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgc 348
|||||||||||||||||
Sbjct: 529 aatggaagagaagttgc 545
>gb|CK093632.1|CK093632 G126P62.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G126P62 3', mRNA sequence
Length = 844
Score = 34.2 bits (17), Expect = 7.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 492 tctgcatcaactgtgctggaa 512
||||||||| |||||||||||
Sbjct: 794 tctgcatcatctgtgctggaa 774
>gb|CV235350.1|CV235350 WS01218.B21_M16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_M16 3', mRNA sequence
Length = 689
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 560 ttgttttgagaagcatg 576
>gb|CV261492.1|CV261492 WS02016.B21_O24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_O24 3', mRNA sequence
Length = 919
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 643 ttgttttgagaagcatg 659
>gb|CV262195.1|CV262195 WS02018.B21_O08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_O08 3', mRNA sequence
Length = 593
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 362 aaagaaaatagcaaatt 378
|||||||||||||||||
Sbjct: 238 aaagaaaatagcaaatt 254
>gb|CV262743.1|CV262743 WS0202.B21_G09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_G09 3', mRNA sequence
Length = 805
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 686 ttgttttgagaagcatg 702
>gb|CV264094.1|CV264094 WS02023.B21_J16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_J16 3', mRNA sequence
Length = 790
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 686 ttgttttgagaagcatg 702
>gb|CV272030.1|CV272030 WS0156.B21.1_G20 PTxN-IB-A-6 Populus trichocarpa x Populus nigra
cDNA clone WS0156_G20 3', mRNA sequence
Length = 695
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 623 ttgttttgagaagcatg 639
>gb|CF936681.1|CF936681 PO3008H11 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 937
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgc 348
|||||||||||||||||
Sbjct: 644 aatggaagagaagttgc 660
>gb|CF936757.1|CF936757 PO3009H07 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 954
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgc 348
|||||||||||||||||
Sbjct: 646 aatggaagagaagttgc 662
>gb|CX282601.1|CX282601 17.5.4 Populus tremula X Populus alba developing vegetative bud
cDNA Library Populus alba x Populus tremula cDNA clone
114, mRNA sequence
Length = 230
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 182 ttgttttgagaagcatg 166
>gb|BP932158.1|BP932158 BP932158 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-032_I16.r 3', mRNA sequence
Length = 473
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 522 aaacactagtttatgat 538
|||||||||||||||||
Sbjct: 44 aaacactagtttatgat 60
>gb|DN488615.1|DN488615 S015G10.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S015G10 3', mRNA sequence
Length = 524
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 432 ttgttttgagaagcatg 448
>gb|DT523084.1|DT523084 WS02038.B21_L21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_L21 3', mRNA sequence
Length = 910
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 451 ttgttttgagaagcatg 467
|||||||||||||||||
Sbjct: 556 ttgttttgagaagcatg 572
>dbj|AB079510.1| Populus kitakamiensis Pklim1 mRNA for transcription factor LIM,
complete cds
Length = 1036
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgc 348
|||||||||||||||||
Sbjct: 743 aatggaagagaagttgc 759
>dbj|AB079511.1| Populus kitakamiensis Pklim1 gene for transcription factor LIM,
complete cds
Length = 1948
Score = 34.2 bits (17), Expect = 7.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 332 aatggaagagaagttgc 348
|||||||||||||||||
Sbjct: 1641 aatggaagagaagttgc 1657
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,259
Number of Sequences: 369679
Number of extensions: 97259
Number of successful extensions: 29901
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29863
Number of HSP's gapped (non-prelim): 38
length of query: 808
length of database: 203,408,664
effective HSP length: 19
effective length of query: 789
effective length of database: 196,384,763
effective search space: 154947578007
effective search space used: 154947578007
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)